Output: predicted peaks

Input: labeled genomic windows

20 labeled genomic windows (chunks) were defined in labels/*.txt
chunk image
1 chr10:18434678-18450517
2 chr10:102130958-102138856
3 chr11:77774370-77794963
4 chr1:209844061-209869873
5 chr12:6421811-6435582
6 chr12:89712825-89739498
7 chr14:22917931-22938629
8 chr1:1077406-1099320
9 chr16:72084355-72088649
10 chr2:188247544-188271641
11 chr22:20833848-20860460
12 chr22:25949908-25979920
13 chr3:12494419-12529405
14 chr3:9920588-9930405
15 chr4:88452179-88481182
16 chr6:44899636-44967279
17 chr6:45812949-45889903
18 chr8:71835804-71848205
19 chr8:87403517-87458855
20 chrX:43448817-43510099

Input: genomic segmentation problems

373 problems were defined in problems.bed
problem peak.regions peak.samples labeled.chunks labeled.regions labels
1 chr1:10000-177417 23 187 0 0 0
2 chr1:227417-267719 0 0 0
3 chr1:317719-471368 31 188 0 0 0
4 chr1:521368-2634220 296 5787 1 7 133
5 chr1:2684220-3845268 10 331 0 0 0
6 chr1:3995268-13052998 519 14175 0 0 0
7 chr1:13102998-13219912 17 44 0 0 0
8 chr1:13319912-13557162 141 762 0 0 0
9 chr1:13607162-16800000 101 3121 0 0 0
10 chr1:17175658-29878082 1194 28118 0 0 0
11 chr1:30028082-91800000 4960 92771 0 0 0
12 chr1:91860000-103863906 926 17211 0 0 0
13 chr1:103913906-120697156 1316 22567 0 0 0
14 chr1:120747156-120936695 0 0 0
15 chr1:121153000-121349000 0 0 0
16 chr1:142781022-142967761 0 0 0
17 chr1:143117761-143292816 0 0 0
18 chr1:143342816-143544525 0 0 0
19 chr1:143644525-143771002 1 10 0 0 0
20 chr1:143871002-144095783 0 0 0
21 chr1:144145783-144224481 28 197 0 0 0
22 chr1:144274481-144401744 62 306 0 0 0
23 chr1:144451744-144622413 0 0 0
24 chr1:144672413-144710724 14 261 0 0 0
25 chr1:144810724-145833118 5 175 0 0 0
26 chr1:145883118-146164650 15 72 0 0 0
27 chr1:146214650-146253299 5 38 0 0 0
28 chr1:146303299-148026038 39 1104 0 0 0
29 chr1:148176038-148361358 0 0 0
30 chr1:148511358-148684147 0 0 0
31 chr1:148734147-148954460 0 0 0
32 chr1:149004460-149459645 1 35 0 0 0
33 chr1:149509645-205922707 3268 76082 0 0 0
34 chr1:206072707-206332221 47 579 0 0 0
35 chr1:206482221-223747846 1447 28297 1 6 210
36 chr1:223797846-235192211 765 18357 0 0 0
37 chr1:235242211-248908210 1016 15959 0 0 0
38 chr1:249058210-249240621 33 577 0 0 0
39 chr2:10000-3529312 87 2233 0 0 0
40 chr2:3579312-5018788 12 188 0 0 0
41 chr2:5118788-16279724 808 16212 0 0 0
42 chr2:16329724-21153113 240 6077 0 0 0
43 chr2:21178113-33000000 814 17807 0 0 0
44 chr2:33200000-87000000 3788 75278 0 0 0
45 chr2:87718206-89630436 45 1133 0 0 0
46 chr2:95326171-109668000 1173 21065 0 0 0
47 chr2:110251337-149690582 7797 44720 0 0 0
48 chr2:149790582-162100000 1024 17361 0 0 0
49 chr2:162200000-234003741 4027 91376 1 6 114
50 chr2:234053741-239801978 272 8241 0 0 0
51 chr2:239831978-240784132 9 294 0 0 0
52 chr2:240809132-243102476 52 1627 0 0 0
53 chr2:243152476-243189373 0 0 0
54 chr3:60000-66170270 4466 89891 2 12 420
55 chr3:66270270-90504854 1887 20825 0 0 0
56 chr3:93504854-194041961 3505 97596 0 0 0
57 chr3:194047251-196620000 68 2257 0 0 0
58 chr3:196630000-197962430 14 490 0 0 0
59 chr4:10000-1423146 18 626 0 0 0
60 chr4:1478646-8799203 456 11336 0 0 0
61 chr4:8818203-9274642 1 35 0 0 0
62 chr4:9324642-31820917 1634 21189 0 0 0
63 chr4:31837417-32834638 93 198 0 0 0
64 chr4:32840638-40296396 419 6366 0 0 0
65 chr4:40297096-49000000 486 7477 0 0 0
66 chr4:52660117-59739333 413 8751 0 0 0
67 chr4:59789333-68260000 212 1767 0 0 0
68 chr4:68270000-75427379 397 7305 0 0 0
69 chr4:75452279-190000000 2591 74613 1 6 210
70 chr5:100000-17500000 1239 19221 0 0 0
71 chr5:17580657-46405641 2196 28906 0 0 0
72 chr5:49600000-91636128 3738 57586 0 0 0
73 chr5:91686128-138787073 6155 64621 0 0 0
74 chr5:138837073-155138727 1314 27771 0 0 0
75 chr5:155188727-180905260 2030 37032 0 0 0
76 chr6:60000-58087659 3878 86710 2 12 228
77 chr6:58137659-58770000 3 77 0 0 0
78 chr6:61880166-62128589 11 26 0 0 0
79 chr6:62178589-95680543 2031 27481 0 0 0
80 chr6:95830543-157559467 3844 81394 0 0 0
81 chr6:157609467-157641300 11 160 0 0 0
82 chr6:157691300-160515000 89 2986 0 0 0
83 chr6:160530000-167942073 418 7131 0 0 0
84 chr6:168042073-170279972 55 1690 0 0 0
85 chr6:170329972-170700000 1 35 0 0 0
86 chr6:170720000-171055067 1 35 0 0 0
87 chr6_apd_hap1:0-207807 0 0 0
88 chr6_apd_hap1:252060-327074 0 0 0
89 chr6_apd_hap1:356458-448574 0 0 0
90 chr6_apd_hap1:536172-588761 0 0 0
91 chr6_apd_hap1:692953-944435 47 148 0 0 0
92 chr6_apd_hap1:963558-970040 0 0 0
93 chr6_apd_hap1:1029417-1173934 6 8 0 0 0
94 chr6_apd_hap1:1198528-1307951 0 0 0
95 chr6_apd_hap1:1317697-1341208 0 0 0
96 chr6_apd_hap1:1344139-1451581 0 0 0
97 chr6_apd_hap1:1556172-1582549 0 0 0
98 chr6_apd_hap1:1598989-1736596 0 0 0
99 chr6_apd_hap1:1786349-1833811 0 0 0
100 chr6_apd_hap1:1937682-2009922 0 0 0
101 chr6_apd_hap1:2164480-2169002 0 0 0
102 chr6_apd_hap1:2254169-2359974 3 20 0 0 0
103 chr6_apd_hap1:2761234-2821679 0 0 0
104 chr6_apd_hap1:2858431-2894657 0 0 0
105 chr6_apd_hap1:3037482-3122973 7 27 0 0 0
106 chr6_apd_hap1:3136480-3180323 0 0 0
107 chr6_apd_hap1:3355295-3370179 0 0 0
108 chr6_apd_hap1:3415446-3491066 0 0 0
109 chr6_apd_hap1:3594101-3638667 0 0 0
110 chr6_apd_hap1:3642320-3696623 1 2 0 0 0
111 chr6_apd_hap1:3736194-3762870 0 0 0
112 chr6_apd_hap1:3766192-3790366 2 8 0 0 0
113 chr6_apd_hap1:3970602-4220467 52 224 0 0 0
114 chr6_apd_hap1:4274176-4390029 12 70 0 0 0
115 chr6_apd_hap1:4597885-4622290 0 0 0
116 chr6_dbb_hap3:0-138055 2 6 0 0 0
117 chr6_dbb_hap3:245960-622457 4 12 0 0 0
118 chr6_dbb_hap3:640380-1337861 75 459 0 0 0
119 chr6_dbb_hap3:1344119-1836690 17 58 0 0 0
120 chr6_dbb_hap3:1837200-2117295 32 204 0 0 0
121 chr6_dbb_hap3:2119813-2606257 164 869 0 0 0
122 chr6_dbb_hap3:2723615-3407000 118 579 0 0 0
123 chr6_dbb_hap3:3481304-3736386 139 588 0 0 0
124 chr6_dbb_hap3:3772614-4206542 110 691 0 0 0
125 chr6_dbb_hap3:4226964-4354126 21 72 0 0 0
126 chr6_dbb_hap3:4376794-4610396 5 16 0 0 0
127 chr6_mann_hap4:0-145852 0 0 0
128 chr6_mann_hap4:184243-1388812 104 466 0 0 0
129 chr6_mann_hap4:1438812-2047420 28 195 0 0 0
130 chr6_mann_hap4:2056121-2252213 0 0 0
131 chr6_mann_hap4:2277026-2312291 0 0 0
132 chr6_mann_hap4:2324610-2517052 4 6 0 0 0
133 chr6_mann_hap4:2540962-2772006 51 329 0 0 0
134 chr6_mann_hap4:2810953-2921096 10 38 0 0 0
135 chr6_mann_hap4:2929556-3062107 8 22 0 0 0
136 chr6_mann_hap4:3151453-3174271 1 6 0 0 0
137 chr6_mann_hap4:3227203-3261361 1 4 0 0 0
138 chr6_mann_hap4:3374492-3412258 1 4 0 0 0
139 chr6_mann_hap4:3450867-3553455 14 53 0 0 0
140 chr6_mann_hap4:3557741-3895092 107 400 0 0 0
141 chr6_mann_hap4:3926341-4236950 59 203 0 0 0
142 chr6_mann_hap4:4245095-4441658 20 172 0 0 0
143 chr6_mann_hap4:4480941-4683263 1 8 0 0 0
144 chr6_mcf_hap5:0-135141 0 0 0
145 chr6_mcf_hap5:138043-179429 0 0 0
146 chr6_mcf_hap5:186757-229133 4 23 0 0 0
147 chr6_mcf_hap5:282732-383988 92 390 0 0 0
148 chr6_mcf_hap5:404415-491590 35 85 0 0 0
149 chr6_mcf_hap5:560421-676599 31 83 0 0 0
150 chr6_mcf_hap5:685588-994250 64 297 0 0 0
151 chr6_mcf_hap5:1009296-1177759 13 114 0 0 0
152 chr6_mcf_hap5:1292220-1562952 26 189 0 0 0
153 chr6_mcf_hap5:1726699-1815769 20 33 0 0 0
154 chr6_mcf_hap5:1838106-2091199 5 9 0 0 0
155 chr6_mcf_hap5:2189158-2241824 9 61 0 0 0
156 chr6_mcf_hap5:2251998-2300850 0 0 0
157 chr6_mcf_hap5:2305647-2712451 92 482 0 0 0
158 chr6_mcf_hap5:2811903-2947576 21 59 0 0 0
159 chr6_mcf_hap5:2958999-3154498 9 52 0 0 0
160 chr6_mcf_hap5:3188719-3329672 9 31 0 0 0
161 chr6_mcf_hap5:3355524-3602941 10 61 0 0 0
162 chr6_mcf_hap5:3659279-3899294 0 0 0
163 chr6_mcf_hap5:3929849-4149579 33 127 0 0 0
164 chr6_mcf_hap5:4149626-4284353 8 30 0 0 0
165 chr6_mcf_hap5:4302274-4422172 0 0 0
166 chr6_mcf_hap5:4594253-4833398 26 244 0 0 0
167 chr6_qbl_hap6:0-521900 1 1 0 0 0
168 chr6_qbl_hap6:681210-2680914 433 1890 0 0 0
169 chr6_qbl_hap6:2732064-3023176 34 119 0 0 0
170 chr6_qbl_hap6:3049607-3316246 42 290 0 0 0
171 chr6_qbl_hap6:3369039-3993031 128 460 0 0 0
172 chr6_qbl_hap6:4020006-4611984 80 325 0 0 0
173 chr6_ssto_hap7:0-861800 180 795 0 0 0
174 chr6_ssto_hap7:941242-1727717 140 684 0 0 0
175 chr6_ssto_hap7:1744408-1836632 14 96 0 0 0
176 chr6_ssto_hap7:1838892-1983561 5 10 0 0 0
177 chr6_ssto_hap7:1997824-2052735 4 28 0 0 0
178 chr6_ssto_hap7:2087415-2101474 0 0 0
179 chr6_ssto_hap7:2113875-2138491 0 0 0
180 chr6_ssto_hap7:2303018-2411247 12 66 0 0 0
181 chr6_ssto_hap7:2461193-3040184 104 497 0 0 0
182 chr6_ssto_hap7:3054966-3093568 0 0 0
183 chr6_ssto_hap7:3154699-3191196 0 0 0
184 chr6_ssto_hap7:3214366-3368931 6 32 0 0 0
185 chr6_ssto_hap7:3445987-4370564 239 1084 0 0 0
186 chr6_ssto_hap7:4420564-4580410 27 220 0 0 0
187 chr6_ssto_hap7:4610218-4639806 0 0 0
188 chr6_ssto_hap7:4661556-4723509 10 34 0 0 0
189 chr6_ssto_hap7:4774367-4783798 0 0 0
190 chr6_ssto_hap7:4836049-4928567 17 69 0 0 0
191 chr7:50000-232484 0 0 0
192 chr7:282484-50370631 3636 71398 0 0 0
193 chr7:50410631-53200000 77 1634 0 0 0
194 chr7:53250000-57000000 115 2824 0 0 0
195 chr7:62500000-74715724 823 16426 0 0 0
196 chr7:74765724-100556043 2463 37226 0 0 0
197 chr7:100606043-130154523 2502 36049 0 0 0
198 chr7:130254523-139379377 531 12951 0 0 0
199 chr7:139404377-142048195 83 2354 0 0 0
200 chr7:142098195-142276197 0 0 0
201 chr7:142326197-143347897 14 404 0 0 0
202 chr7:143397897-154270634 631 10393 0 0 0
203 chr7:154370634-159128663 172 3679 0 0 0
204 chr8:10000-7474649 312 4936 0 0 0
205 chr8:7524649-12091854 344 6625 0 0 0
206 chr8:12141854-43500000 3005 48810 0 0 0
207 chr8:48135599-86500000 3136 39589 1 6 114
208 chr8:87000000-142766515 4374 80510 1 6 114
209 chr8:142816515-145332588 58 1922 0 0 0
210 chr8:145432588-146304022 3 105 0 0 0
211 chr9:10000-39663686 3146 46306 0 0 0
212 chr9:39713686-39974796 156 874 0 0 0
213 chr9:40024796-40233029 100 697 0 0 0
214 chr9:40283029-40425834 101 546 0 0 0
215 chr9:40475834-40940341 4 108 0 0 0
216 chr9:40990341-41143214 66 493 0 0 0
217 chr9:41193214-41365793 96 587 0 0 0
218 chr9:41415793-42613955 201 1282 0 0 0
219 chr9:42663955-43213698 69 364 0 0 0
220 chr9:43313698-43946569 165 903 0 0 0
221 chr9:43996569-44676646 6 189 0 0 0
222 chr9:44726646-44908293 0 0 0
223 chr9:44958293-45250203 1 35 0 0 0
224 chr9:45350203-45815521 3 103 0 0 0
225 chr9:45865521-46216430 129 944 0 0 0
226 chr9:46266430-46461039 101 670 0 0 0
227 chr9:46561039-47060133 160 966 0 0 0
228 chr9:47160133-47317679 1 22 0 0 0
229 chr9:65467679-65918360 224 1556 0 0 0
230 chr9:65968360-66192215 50 341 0 0 0
231 chr9:66242215-66404656 28 89 0 0 0
232 chr9:66454656-66614195 0 0 0
233 chr9:67516296-67987998 54 430 0 0 0
234 chr9:68137998-68514181 0 0 0
235 chr9:68664181-68838946 0 0 0
236 chr9:68988946-69278385 2 70 0 0 0
237 chr9:69328385-69703000 2 54 0 0 0
238 chr9:69712000-70010542 1 35 0 0 0
239 chr9:70060542-70218729 33 225 0 0 0
240 chr9:70318729-70506535 2 33 0 0 0
241 chr9:70556535-70735468 1 34 0 0 0
242 chr9:70835468-92343416 2166 34009 0 0 0
243 chr9:92443416-92528796 0 0 0
244 chr9:92678796-133073060 3334 74304 0 0 0
245 chr9:133223060-137041193 125 3958 0 0 0
246 chr9:137091193-139166997 39 1268 0 0 0
247 chr9:139216997-140200000 6 207 0 0 0
248 chr9:140250000-141000000 5 157 0 0 0
249 chr10:60000-17974675 1344 25095 0 0 0
250 chr10:18024675-38818835 1779 32619 1 6 210
251 chr10:42746000-46426964 159 4340 0 0 0
252 chr10:47529169-47792476 0 0 0
253 chr10:47892476-48055707 1 35 0 0 0
254 chr10:48105707-49095536 14 341 0 0 0
255 chr10:49195536-51137410 54 1411 0 0 0
256 chr10:51187410-51398845 152 965 0 0 0
257 chr10:51448845-125869472 3935 95897 1 6 114
258 chr10:125919472-128616069 80 2487 0 0 0
259 chr10:128766069-133381404 126 2587 0 0 0
260 chr10:133431404-133677527 0 0 0
261 chr10:133727527-135477000 35 1113 0 0 0
262 chr11:60000-580000 0 0 0
263 chr11:590000-900000 0 0 0
264 chr11:1212759-3650000 60 1914 0 0 0
265 chr11:3700000-48500000 4134 64178 0 0 0
266 chr11:55100000-69089801 763 21340 0 0 0
267 chr11:69139801-69724695 0 0 0
268 chr11:69774695-87688378 1579 29212 1 6 210
269 chr11:87738378-96287584 692 11472 0 0 0
270 chr11:96437584-134946516 3399 54291 0 0 0
271 chr12:60000-95739 0 0 0
272 chr12:145739-7189876 400 10986 1 6 210
273 chr12:7239876-34856694 2373 37290 0 0 0
274 chr12:38150000-66400000 2486 46697 0 0 0
275 chr12:66500000-109373470 3324 57256 1 6 114
276 chr12:109423470-122530623 998 20777 0 0 0
277 chr12:122580623-132706992 530 12082 0 0 0
278 chr12:132806992-133841895 11 381 0 0 0
279 chr13:19020000-86760324 3513 69532 0 0 0
280 chr13:86910324-112353994 1993 25849 0 0 0
281 chr13:112503994-114325993 38 1187 0 0 0
282 chr13:114425993-114639948 2 70 0 0 0
283 chr13:114739948-115109878 0 0 0
284 chr14:19050000-107289540 3867 96532 1 6 210
285 chr15:20000000-20894633 8 38 0 0 0
286 chr15:20935075-21398819 19 145 0 0 0
287 chr15:21885000-22212114 1 32 0 0 0
288 chr15:22262114-22596193 0 0 0
289 chr15:22646193-23514853 9 260 0 0 0
290 chr15:23564853-29159443 244 3085 0 0 0
291 chr15:29209443-77800000 3892 88389 0 0 0
292 chr15:77912000-82829645 249 6776 0 0 0
293 chr15:82879645-84984473 68 2004 0 0 0
294 chr15:85034473-102521392 1486 27536 0 0 0
295 chr16:60000-8636921 417 11612 0 0 0
296 chr16:8686921-32000000 1809 34805 0 0 0
297 chr16:46510000-88389383 3236 65313 1 6 210
298 chr16:88439383-90294753 41 1417 0 0 0
299 chr17:0-296626 0 0 0
300 chr17:396626-21566608 2537 45039 0 0 0
301 chr17:21666608-22200000 4 114 0 0 0
302 chr17:25263006-34675848 577 14066 0 0 0
303 chr17:34725848-41350000 325 10144 0 0 0
304 chr17:41450000-62410760 1939 39034 0 0 0
305 chr17:62460760-77546461 1195 29906 0 0 0
306 chr17:77596461-79709049 46 1576 0 0 0
307 chr17:79759049-81195210 16 559 0 0 0
308 chr17_ctg5_hap1:0-1256794 209 1631 0 0 0
309 chr17_ctg5_hap1:1306794-1588968 101 633 0 0 0
310 chr17_ctg5_hap1:1638968-1680828 1 3 0 0 0
311 chr18:200000-15000000 1260 21486 0 0 0
312 chr18:18521000-52059136 2890 38524 0 0 0
313 chr18:52209136-72283353 1571 22439 0 0 0
314 chr18:72333353-75721820 136 2645 0 0 0
315 chr18:75771820-78017248 43 1238 0 0 0
316 chr19:60000-7346004 378 11864 0 0 0
317 chr19:7396004-8687198 13 455 0 0 0
318 chr19:8737198-20523415 548 16719 0 0 0
319 chr19:20573415-24631782 76 1781 0 0 0
320 chr19:28000000-59118983 1882 49170 0 0 0
321 chr20:60000-25500000 2276 38787 0 0 0
322 chr20:29850000-34897085 246 7757 0 0 0
323 chr20:34947085-61091437 2169 44260 0 0 0
324 chr20:61141437-61213369 0 0 0
325 chr20:61263369-62965520 36 1162 0 0 0
326 chr21:9411193-9595548 0 0 0
327 chr21:9645548-9775437 0 0 0
328 chr21:10084920-10215976 0 0 0
329 chr21:10365976-10647896 0 0 0
330 chr21:14338129-42955559 2419 40064 0 0 0
331 chr21:43005559-44632664 26 858 0 0 0
332 chr21:44682664-48119895 112 3628 0 0 0
333 chr22:16050000-16697850 0 0 0
334 chr22:16847850-18600000 34 1051 0 0 0
335 chr22:18900000-20509431 24 791 0 0 0
336 chr22:20700000-50364777 2517 57312 2 12 228
337 chr22:50414777-51244566 3 104 0 0 0
338 chrX:60000-94821 0 0 0
339 chrX:144821-231384 0 0 0
340 chrX:281384-1047557 0 0 0
341 chrX:1097557-1134113 0 0 0
342 chrX:1184113-1264234 0 0 0
343 chrX:1314234-2068238 0 0 0
344 chrX:2118238-7623882 183 2258 0 0 0
345 chrX:7673882-10738674 111 2817 0 0 0
346 chrX:10788674-37098256 1798 20344 0 0 0
347 chrX:37148256-49242997 856 15276 1 6 210
348 chrX:49292997-49974173 3 98 0 0 0
349 chrX:50024173-52395914 27 581 0 0 0
350 chrX:52445914-58500000 167 3105 0 0 0
351 chrX:62000000-76653692 686 8122 0 0 0
352 chrX:76703692-113517668 1521 14228 0 0 0
353 chrX:113567668-115682290 46 1010 0 0 0
354 chrX:115732290-120013235 160 3299 0 0 0
355 chrX:120063235-143507324 1029 12470 0 0 0
356 chrX:143557324-148906424 138 1571 0 0 0
357 chrX:148956424-149032062 0 0 0
358 chrX:149082062-152277099 92 2085 0 0 0
359 chrX:152327099-155260560 60 1799 0 0 0
360 chrY:10000-44821 0 0 0
361 chrY:94821-181384 0 0 0
362 chrY:231384-997557 0 0 0
363 chrY:1047557-1084113 0 0 0
364 chrY:1134113-1214234 0 0 0
365 chrY:1264234-2018238 0 0 0
366 chrY:2068238-8914955 1940 6818 0 0 0
367 chrY:8964955-9241322 2 6 0 0 0
368 chrY:13104553-13143954 13 42 0 0 0
369 chrY:14000000-20143885 194 570 0 0 0
370 chrY:20193885-22369679 34 97 0 0 0
371 chrY:22419679-23901428 28 94 0 0 0
372 chrY:23951428-28819361 117 341 0 0 0
373 chrY:58819361-58917656 0 0 0

Output: predicted group-specific peaks

These are great candidates for re-labeling.

AC1

0 genomic regions were predicted to have a peak in each AC1 sample, and no peaks in other samples.

0 genomic regions were predicted to have no peaks in any AC1 samples, and at least one other group with peaks in all samples.

AC2

0 genomic regions were predicted to have a peak in each AC2 sample, and no peaks in other samples.

0 genomic regions were predicted to have no peaks in any AC2 samples, and at least one other group with peaks in all samples.

ACi

1 genomic region was predicted to have a peak in each ACi sample, and no peaks in other samples.

peak peakBases loss.diff samples
1 chr13:37722654-37722987 333 15576.16 ACi:4

0 genomic regions were predicted to have no peaks in any ACi samples, and at least one other group with peaks in all samples.

AD1

11 genomic regions were predicted to have a peak in each AD1 sample, and no peaks in other samples.

peak peakBases loss.diff samples
1 chr14:74936271-74936532 261 45642.26 AD1:4
2 chr7:29835446-29836084 638 24495.63 AD1:4
3 chr8:90973506-90974171 665 22326.35 AD1:4
4 chrX:115407478-115407890 412 19784.48 AD1:4
5 chr17:6502661-6503111 450 17063.15 AD1:4
6 chr5:16863608-16863898 290 16556.16 AD1:4
7 chr12:78166456-78166786 330 16098.50 AD1:4
8 chr2:161329299-161329581 282 11087.84 AD1:4
9 chr7:40263472-40263690 218 10833.14 AD1:4
10 chr2:146892895-146893179 284 10094.99 AD1:4
11 chr13:110932598-110932956 358 8723.99 AD1:4

0 genomic regions were predicted to have no peaks in any AD1 samples, and at least one other group with peaks in all samples.

AD2

0 genomic regions were predicted to have a peak in each AD2 sample, and no peaks in other samples.

0 genomic regions were predicted to have no peaks in any AD2 samples, and at least one other group with peaks in all samples.

Ai

59 genomic regions were predicted to have a peak in each Ai sample, and no peaks in other samples.

peak peakBases loss.diff samples
1 chr22:36621230-36622957 1727 135671.01 Ai:4
2 chr15:90406336-90407526 1190 54391.21 Ai:4
3 chr2:217551524-217552730 1206 46698.43 Ai:4
4 chr2:85092288-85093572 1284 44902.94 Ai:4
5 chr2:216983202-216983453 251 41125.69 Ai:4
6 chr2:105403167-105403554 387 40476.48 Ai:4
7 chr7:75575044-75575399 355 38793.35 Ai:4
8 chr6:79688965-79689482 517 30554.43 Ai:4
9 chr12:126641214-126641577 363 27472.81 Ai:4
10 chr11:109244950-109245479 529 26554.45 Ai:4
11 chr10:73790575-73791101 526 26006.96 Ai:4
12 chr15:40481028-40481456 428 23173.20 Ai:4
13 chr7:23687142-23687323 181 23036.87 Ai:4
14 chr16:72088254-72088520 266 22937.94 Ai:4
15 chr2:72886683-72887244 561 22892.94 Ai:4
16 chr1:247072643-247073319 676 21924.40 Ai:4
17 chr11:8728297-8728534 237 21758.95 Ai:4
18 chr20:13436461-13436675 214 21679.77 Ai:4
19 chr17:60110758-60111012 254 21518.79 Ai:4
20 chrX:38676351-38676709 358 20842.44 Ai:4
21 chr12:58948323-58948808 485 20118.13 Ai:4
22 chr12:30663116-30663338 222 19499.56 Ai:4
23 chr7:24953522-24953937 415 19000.16 Ai:4
24 chr18:56034122-56034558 436 18851.18 Ai:4
25 chr1:168538800-168539033 233 18802.88 Ai:4
26 chr5:65638263-65638593 330 18263.86 Ai:4
27 chrX:128663838-128664292 454 17745.32 Ai:4
28 chr12:75902079-75902281 202 17546.23 Ai:4
29 chr5:73692827-73693169 342 17283.92 Ai:4
30 chr6:106082605-106082822 217 16983.70 Ai:4
31 chr17:67148726-67148921 195 16906.04 Ai:4
32 chr8:124697291-124697554 263 16634.12 Ai:4
33 chr15:41901309-41901587 278 16622.92 Ai:4
34 chrX:16938298-16938589 291 16379.16 Ai:4
35 chr15:65983264-65983414 150 16349.81 Ai:4
36 chr1:169478142-169478437 295 16193.47 Ai:4
37 chr1:110893085-110893628 543 16182.20 Ai:4
38 chr6:122221927-122222155 228 15480.54 Ai:4
39 chr11:77131778-77132252 474 15448.81 Ai:4
40 chr7:23173384-23173715 331 14693.42 Ai:4
41 chr21:23179789-23180158 369 14571.78 Ai:4
42 chr1:55340776-55340935 159 13940.03 Ai:4
43 chr9:116965101-116965481 380 13869.08 Ai:4
44 chr1:67848066-67848306 240 13842.18 Ai:4
45 chr5:17897866-17898258 392 13832.09 Ai:4
46 chr2:129110308-129110647 339 13686.73 Ai:4
47 chr8:28421372-28421568 196 12598.55 Ai:4
48 chr5:79710044-79710205 161 12405.82 Ai:4
49 chr9:111824981-111825179 198 11767.62 Ai:4
50 chr2:9263034-9263257 223 11002.99 Ai:4
51 chr7:100145687-100145856 169 10708.09 Ai:4
52 chr6:33820535-33820732 197 10642.29 Ai:4
53 chr5:163076655-163076844 189 10014.25 Ai:4
54 chr21:37767789-37768058 269 9940.60 Ai:4
55 chr5:54924836-54924994 158 9542.35 Ai:4
56 chr16:69729065-69729262 197 9408.99 Ai:4
57 chr5:38876730-38876943 213 9157.06 Ai:4
58 chr11:18019396-18019547 151 8951.46 Ai:4
59 chrX:39173780-39174011 231 8495.06 Ai:4

7 genomic regions were predicted to have no peaks in any Ai samples, and at least one other group with peaks in all samples.

peak peakBases loss.diff samples
1 chr2:217546937-217547420 483 874376.12 AC1,AC2,ACi,AD1,AD2,ND2
2 chr7:23132794-23133468 674 583263.19 AC1,AC2,ACi,AD1,AD2,ND2
3 chr5:64468374-64468652 278 580242.54 AC1,AC2,ACi,AD1,AD2,ND2
4 chr6:156330844-156331079 235 512592.04 AC1,AC2,ACi,AD1,AD2,ND2
5 chr1:64354672-64354971 299 287185.44 AC1,AC2,ACi,AD1,AD2,ND2
6 chr7:92745130-92745352 222 264938.64 AC1,AC2,ACi,AD1,AD2,ND2
7 chr19:48969915-48970130 215 203603.78 AC1,AC2,ACi,AD1,AD2,ND2

ND2

23 genomic regions were predicted to have a peak in each ND2 sample, and no peaks in other samples.

peak peakBases loss.diff samples
1 chr6:134487581-134488135 554 82417.26 ND2:4
2 chr1:159111315-159112204 889 57283.43 ND2:4
3 chr17:20187430-20188294 864 49258.78 ND2:4
4 chr3:16913772-16914476 704 27130.03 ND2:4
5 chrX:53741447-53742103 656 24713.54 ND2:4
6 chr18:45790479-45791123 644 22623.18 ND2:4
7 chr12:111057205-111057681 476 20571.05 ND2:4
8 chr6:131853733-131854160 427 19613.91 ND2:4
9 chr10:98262697-98262994 297 19466.42 ND2:4
10 chr5:172209278-172209466 188 17950.09 ND2:4
11 chr6:42172107-42172457 350 17383.54 ND2:4
12 chr18:6021863-6022410 547 16818.63 ND2:4
13 chr3:84124035-84124301 266 16533.85 ND2:4
14 chr9:77803692-77803861 169 16094.16 ND2:4
15 chr9:112018812-112019092 280 14866.12 ND2:4
16 chr10:22305093-22305359 266 14551.68 ND2:4
17 chr7:93691652-93692032 380 14242.23 ND2:4
18 chr12:44206831-44206996 165 13046.26 ND2:4
19 chr17:3506863-3507098 235 12640.10 ND2:4
20 chr5:34970812-34971090 278 11104.46 ND2:4
21 chr19:49122189-49122347 158 9736.15 ND2:4
22 chr9:78407447-78407756 309 9115.81 ND2:4
23 chr20:6482984-6483217 233 7043.05 ND2:4

21 genomic regions were predicted to have no peaks in any ND2 samples, and at least one other group with peaks in all samples.

peak peakBases loss.diff samples
1 chr1:249120088-249120500 412 2587152.24 AC1,AC2,ACi,AD1,AD2,Ai
2 chr15:39327001-39327419 418 1051276.23 AC1,AC2,ACi,AD1,AD2,Ai
3 chr1:249166989-249167588 599 881082.12 AC1,AC2,ACi,AD1,AD2,Ai
4 chr5:135416191-135416424 233 783758.22 AC1,AC2,ACi,AD1,AD2,Ai
5 chr1:249117638-249118037 399 750053.94 AC1,AC2,ACi,AD1,AD2,Ai
6 chr16:78850610-78851035 425 655388.96 AC1,AC2,ACi,AD1,AD2,Ai
7 chr1:249220690-249221342 652 524933.82 AC1,AC2,ACi,AD1,AD2,Ai
8 chr2:208744114-208744676 562 473114.23 AC1,AC2,ACi,AD1,AD2,Ai
9 chr14:34970451-34970822 371 443154.40 AC1,AC2,ACi,AD1,AD2,Ai
10 chr4:102980577-102980838 261 417118.91 AC1,AC2,ACi,AD1,AD2,Ai
11 chr6:88288139-88288464 325 384376.79 AC1,AC2,ACi,AD1,AD2,Ai
12 chr13:74946618-74946982 364 384143.37 AC1,AC2,ACi,AD1,AD2,Ai
13 chr6:130647736-130648017 281 322870.92 AC1,AC2,ACi,AD1,AD2,Ai
14 chr1:249135137-249135495 358 322356.73 AC1,AC2,ACi,AD1,AD2,Ai
15 chr12:20618947-20619198 251 283293.42 AC1,AC2,ACi,AD1,AD2,Ai
16 chr22:35992902-35993173 271 219076.71 AC1,AC2,ACi,AD1,AD2,Ai
17 chr7:29534073-29534311 238 204293.06 AC1,AC2,ACi,AD1,AD2,Ai
18 chr10:123004343-123004637 294 198262.05 AC1,AC2,ACi,AD1,AD2,Ai
19 chr17:29641125-29641551 426 195793.56 AC1,AC2,ACi,AD1,AD2,Ai
20 chr11:77543814-77543997 183 151304.90 AC1,AC2,ACi,AD1,AD2,Ai
21 chr1:249153169-249153377 208 130794.01 AC1,AC2,ACi,AD1,AD2,Ai