PeakSegFPOP + PeakSegJoint predictions

Output: predicted peaks

6424 genomic regions were found to have at least one sample with a peak (track hub, peaks_summary.tsv).
92135 peaks were detected overall, across 24 samples.
Peak presence/absence matrices: (regions x samples), (regions x groups),
Peak raw height matrix (regions x samples), mean coverage in peak, which is not comparable between samples, but is useful for plotting the segment mean on top of the raw coverage/count data,
Peak normalized height matrix (regions x samples), log10(mean coverage in peak/mean coverage in background on the same sample), which is comparable between samples,
Peak log-likelihood increase matrix (regions x samples) -- useful for ranking peaks (e.g. taking top 100 in each sample) -- wider and taller peaks are more likely, and have larger values in this matrix -- technically the values are computed as: nll_1 - nll_3, where nll_k is the negative log likelihood of the model with k segments (nll_1 is the model with one segment, no peak; nll_3 is the model with a peak, three segments, one change up and one change down).

Input: labeled genomic windows

8 labeled genomic windows (chunks) were defined in 1 label file(s): labels/2018-01-11.txt

	chunk	img
1	chr5:9779298-10259543
2	chr6:10642493-10706095
3	chr6:66860673-67897775
4	chr7:66775734-67059840
5	chr8:65927408-67266271
6	chr8:73348002-74081099
7	chr8:95917325-97000000
8	chr8:97000001-97495132

Input: genomic segmentation problems

373 problems were defined in problems.bed

	problem	peak.regions	peak.samples	labeled.chunks	labeled.regions	labels
1	chr1:10000-177417	1	21	0	0	0
2	chr1:227417-267719			0	0	0
3	chr1:317719-471368			0	0	0
4	chr1:521368-2634220	12	202	0	0	0
5	chr1:2684220-3845268	5	46	0	0	0
6	chr1:3995268-13052998	24	415	0	0	0
7	chr1:13102998-13219912			0	0	0
8	chr1:13319912-13557162			0	0	0
9	chr1:13607162-16800000	10	171	0	0	0
10	chr1:17175658-29878082	58	905	0	0	0
11	chr1:30028082-91800000	181	2552	0	0	0
12	chr1:91860000-103863906	24	348	0	0	0
13	chr1:103913906-120697156	49	687	0	0	0
14	chr1:120747156-120936695			0	0	0
15	chr1:121153000-121349000			0	0	0
16	chr1:142781022-142967761	1	1	0	0	0
17	chr1:143117761-143292816			0	0	0
18	chr1:143342816-143544525	1	18	0	0	0
19	chr1:143644525-143771002			0	0	0
20	chr1:143871002-144095783	1	24	0	0	0
21	chr1:144145783-144224481			0	0	0
22	chr1:144274481-144401744			0	0	0
23	chr1:144451744-144622413	2	44	0	0	0
24	chr1:144672413-144710724			0	0	0
25	chr1:144810724-145833118	5	115	0	0	0
26	chr1:145883118-146164650			0	0	0
27	chr1:146214650-146253299			0	0	0
28	chr1:146303299-148026038	7	116	0	0	0
29	chr1:148176038-148361358			0	0	0
30	chr1:148511358-148684147	1	21	0	0	0
31	chr1:148734147-148954460	1	24	0	0	0
32	chr1:149004460-149459645	1	21	0	0	0
33	chr1:149509645-205922707	176	2325	0	0	0
34	chr1:206072707-206332221	1	0	0	0	0
35	chr1:206482221-223747846	35	486	0	0	0
36	chr1:223797846-235192211	38	609	0	0	0
37	chr1:235242211-248908210	27	356	0	0	0
38	chr1:249058210-249240621	1	22	0	0	0
39	chr2:10000-3529312	6	92	0	0	0
40	chr2:3579312-5018788	2	34	0	0	0
41	chr2:5118788-16279724	19	255	0	0	0
42	chr2:16329724-21153113	10	128	0	0	0
43	chr2:21178113-33000000	26	429	0	0	0
44	chr2:33200000-87000000	115	1620	0	0	0
45	chr2:87718206-89630436	5	77	0	0	0
46	chr2:95326171-109668000	44	589	0	0	0
47	chr2:110251337-149690582	60	931	0	0	0
48	chr2:149790582-162100000	21	309	0	0	0
49	chr2:162200000-234003741	175	2315	0	0	0
50	chr2:234053741-239801978	13	183	0	0	0
51	chr2:239831978-240784132	2	24	0	0	0
52	chr2:240809132-243102476	9	138	0	0	0
53	chr2:243152476-243189373			0	0	0
54	chr3:60000-66170270	181	2547	0	0	0
55	chr3:66270270-90504854	16	228	0	0	0
56	chr3:93504854-194041961	251	3322	0	0	0
57	chr3:194047251-196620000	13	206	0	0	0
58	chr3:196630000-197962430	5	84	0	0	0
59	chr4:10000-1423146	7	140	0	0	0
60	chr4:1478646-8799203	21	340	0	0	0
61	chr4:8818203-9274642			0	0	0
62	chr4:9324642-31820917	27	362	0	0	0
63	chr4:31837417-32834638			0	0	0
64	chr4:32840638-40296396	13	215	0	0	0
65	chr4:40297096-49000000	12	172	0	0	0
66	chr4:52660117-59739333	15	198	0	0	0
67	chr4:59789333-68260000			0	0	0
68	chr4:68270000-75427379	10	147	0	0	0
69	chr4:75452279-190000000	228	2797	0	0	0
70	chr5:100000-17500000	28	445	1	2	26
71	chr5:17580657-46405641	37	569	0	0	0
72	chr5:49600000-91636128	71	1003	0	0	0
73	chr5:91686128-138787073	88	1225	0	0	0
74	chr5:138837073-155138727	37	588	0	0	0
75	chr5:155188727-180905260	59	876	0	0	0
76	chr6:60000-58087659	171	2458	1	2	26
77	chr6:58137659-58770000	1	7	0	0	0
78	chr6:61880166-62128589	1	8	0	0	0
79	chr6:62178589-95680543	36	547	1	2	26
80	chr6:95830543-157559467	118	1571	0	0	0
81	chr6:157609467-157641300			0	0	0
82	chr6:157691300-160515000	8	143	0	0	0
83	chr6:160530000-167942073	9	116	0	0	0
84	chr6:168042073-170279972	3	48	0	0	0
85	chr6:170329972-170700000	1	16	0	0	0
86	chr6:170720000-171055067	1	20	0	0	0
87	chr6_apd_hap1:0-207807			0	0	0
88	chr6_apd_hap1:252060-327074			0	0	0
89	chr6_apd_hap1:356458-448574			0	0	0
90	chr6_apd_hap1:536172-588761			0	0	0
91	chr6_apd_hap1:692953-944435			0	0	0
92	chr6_apd_hap1:963558-970040			0	0	0
93	chr6_apd_hap1:1029417-1173934			0	0	0
94	chr6_apd_hap1:1198528-1307951			0	0	0
95	chr6_apd_hap1:1317697-1341208			0	0	0
96	chr6_apd_hap1:1344139-1451581			0	0	0
97	chr6_apd_hap1:1556172-1582549			0	0	0
98	chr6_apd_hap1:1598989-1736596			0	0	0
99	chr6_apd_hap1:1786349-1833811			0	0	0
100	chr6_apd_hap1:1937682-2009922			0	0	0
101	chr6_apd_hap1:2164480-2169002			0	0	0
102	chr6_apd_hap1:2254169-2359974			0	0	0
103	chr6_apd_hap1:2761234-2821679			0	0	0
104	chr6_apd_hap1:2858431-2894657			0	0	0
105	chr6_apd_hap1:3037482-3122973			0	0	0
106	chr6_apd_hap1:3136480-3180323			0	0	0
107	chr6_apd_hap1:3355295-3370179			0	0	0
108	chr6_apd_hap1:3415446-3491066			0	0	0
109	chr6_apd_hap1:3594101-3638667			0	0	0
110	chr6_apd_hap1:3642320-3696623			0	0	0
111	chr6_apd_hap1:3736194-3762870			0	0	0
112	chr6_apd_hap1:3766192-3790366			0	0	0
113	chr6_apd_hap1:3970602-4220467			0	0	0
114	chr6_apd_hap1:4274176-4390029			0	0	0
115	chr6_apd_hap1:4597885-4622290			0	0	0
116	chr6_dbb_hap3:0-138055			0	0	0
117	chr6_dbb_hap3:245960-622457			0	0	0
118	chr6_dbb_hap3:640380-1337861			0	0	0
119	chr6_dbb_hap3:1344119-1836690			0	0	0
120	chr6_dbb_hap3:1837200-2117295			0	0	0
121	chr6_dbb_hap3:2119813-2606257			0	0	0
122	chr6_dbb_hap3:2723615-3407000			0	0	0
123	chr6_dbb_hap3:3481304-3736386			0	0	0
124	chr6_dbb_hap3:3772614-4206542			0	0	0
125	chr6_dbb_hap3:4226964-4354126			0	0	0
126	chr6_dbb_hap3:4376794-4610396			0	0	0
127	chr6_mann_hap4:0-145852			0	0	0
128	chr6_mann_hap4:184243-1388812			0	0	0
129	chr6_mann_hap4:1438812-2047420			0	0	0
130	chr6_mann_hap4:2056121-2252213			0	0	0
131	chr6_mann_hap4:2277026-2312291			0	0	0
132	chr6_mann_hap4:2324610-2517052			0	0	0
133	chr6_mann_hap4:2540962-2772006			0	0	0
134	chr6_mann_hap4:2810953-2921096			0	0	0
135	chr6_mann_hap4:2929556-3062107			0	0	0
136	chr6_mann_hap4:3151453-3174271			0	0	0
137	chr6_mann_hap4:3227203-3261361			0	0	0
138	chr6_mann_hap4:3374492-3412258			0	0	0
139	chr6_mann_hap4:3450867-3553455			0	0	0
140	chr6_mann_hap4:3557741-3895092			0	0	0
141	chr6_mann_hap4:3926341-4236950			0	0	0
142	chr6_mann_hap4:4245095-4441658			0	0	0
143	chr6_mann_hap4:4480941-4683263			0	0	0
144	chr6_mcf_hap5:0-135141			0	0	0
145	chr6_mcf_hap5:138043-179429			0	0	0
146	chr6_mcf_hap5:186757-229133			0	0	0
147	chr6_mcf_hap5:282732-383988			0	0	0
148	chr6_mcf_hap5:404415-491590			0	0	0
149	chr6_mcf_hap5:560421-676599			0	0	0
150	chr6_mcf_hap5:685588-994250			0	0	0
151	chr6_mcf_hap5:1009296-1177759			0	0	0
152	chr6_mcf_hap5:1292220-1562952			0	0	0
153	chr6_mcf_hap5:1726699-1815769			0	0	0
154	chr6_mcf_hap5:1838106-2091199			0	0	0
155	chr6_mcf_hap5:2189158-2241824			0	0	0
156	chr6_mcf_hap5:2251998-2300850			0	0	0
157	chr6_mcf_hap5:2305647-2712451			0	0	0
158	chr6_mcf_hap5:2811903-2947576			0	0	0
159	chr6_mcf_hap5:2958999-3154498			0	0	0
160	chr6_mcf_hap5:3188719-3329672			0	0	0
161	chr6_mcf_hap5:3355524-3602941			0	0	0
162	chr6_mcf_hap5:3659279-3899294			0	0	0
163	chr6_mcf_hap5:3929849-4149579			0	0	0
164	chr6_mcf_hap5:4149626-4284353			0	0	0
165	chr6_mcf_hap5:4302274-4422172			0	0	0
166	chr6_mcf_hap5:4594253-4833398			0	0	0
167	chr6_qbl_hap6:0-521900			0	0	0
168	chr6_qbl_hap6:681210-2680914			0	0	0
169	chr6_qbl_hap6:2732064-3023176			0	0	0
170	chr6_qbl_hap6:3049607-3316246			0	0	0
171	chr6_qbl_hap6:3369039-3993031			0	0	0
172	chr6_qbl_hap6:4020006-4611984			0	0	0
173	chr6_ssto_hap7:0-861800			0	0	0
174	chr6_ssto_hap7:941242-1727717			0	0	0
175	chr6_ssto_hap7:1744408-1836632			0	0	0
176	chr6_ssto_hap7:1838892-1983561			0	0	0
177	chr6_ssto_hap7:1997824-2052735			0	0	0
178	chr6_ssto_hap7:2087415-2101474			0	0	0
179	chr6_ssto_hap7:2113875-2138491			0	0	0
180	chr6_ssto_hap7:2303018-2411247			0	0	0
181	chr6_ssto_hap7:2461193-3040184			0	0	0
182	chr6_ssto_hap7:3054966-3093568			0	0	0
183	chr6_ssto_hap7:3154699-3191196			0	0	0
184	chr6_ssto_hap7:3214366-3368931			0	0	0
185	chr6_ssto_hap7:3445987-4370564			0	0	0
186	chr6_ssto_hap7:4420564-4580410			0	0	0
187	chr6_ssto_hap7:4610218-4639806			0	0	0
188	chr6_ssto_hap7:4661556-4723509			0	0	0
189	chr6_ssto_hap7:4774367-4783798			0	0	0
190	chr6_ssto_hap7:4836049-4928567			0	0	0
191	chr7:50000-232484	1	23	0	0	0
192	chr7:282484-50370631	110	1530	0	0	0
193	chr7:50410631-53200000	3	37	0	0	0
194	chr7:53250000-57000000	5	93	0	0	0
195	chr7:62500000-74715724	36	541	1	2	26
196	chr7:74765724-100556043	53	804	0	0	0
197	chr7:100606043-130154523	63	882	0	0	0
198	chr7:130254523-139379377	22	332	0	0	0
199	chr7:139404377-142048195	6	99	0	0	0
200	chr7:142098195-142276197			0	0	0
201	chr7:142326197-143347897	2	37	0	0	0
202	chr7:143397897-154270634	21	338	0	0	0
203	chr7:154370634-159128663	10	168	0	0	0
204	chr8:10000-7474649	10	156	0	0	0
205	chr8:7524649-12091854	10	150	0	0	0
206	chr8:12141854-43500000	69	959	0	0	0
207	chr8:48135599-86500000	58	793	2	9	117
208	chr8:87000000-142766515	99	1322	2	9	117
209	chr8:142816515-145332588	11	181	0	0	0
210	chr8:145432588-146304022	7	131	0	0	0
211	chr9:10000-39663686	62	963	0	0	0
212	chr9:39713686-39974796			0	0	0
213	chr9:40024796-40233029			0	0	0
214	chr9:40283029-40425834			0	0	0
215	chr9:40475834-40940341			0	0	0
216	chr9:40990341-41143214			0	0	0
217	chr9:41193214-41365793			0	0	0
218	chr9:41415793-42613955	1	15	0	0	0
219	chr9:42663955-43213698			0	0	0
220	chr9:43313698-43946569			0	0	0
221	chr9:43996569-44676646	1	24	0	0	0
222	chr9:44726646-44908293	1	23	0	0	0
223	chr9:44958293-45250203			0	0	0
224	chr9:45350203-45815521			0	0	0
225	chr9:45865521-46216430			0	0	0
226	chr9:46266430-46461039			0	0	0
227	chr9:46561039-47060133			0	0	0
228	chr9:47160133-47317679			0	0	0
229	chr9:65467679-65918360			0	0	0
230	chr9:65968360-66192215			0	0	0
231	chr9:66242215-66404656			0	0	0
232	chr9:66454656-66614195	2	22	0	0	0
233	chr9:67516296-67987998			0	0	0
234	chr9:68137998-68514181	1	24	0	0	0
235	chr9:68664181-68838946	1	15	0	0	0
236	chr9:68988946-69278385	1	23	0	0	0
237	chr9:69328385-69703000			0	0	0
238	chr9:69712000-70010542	2	36	0	0	0
239	chr9:70060542-70218729			0	0	0
240	chr9:70318729-70506535			0	0	0
241	chr9:70556535-70735468			0	0	0
242	chr9:70835468-92343416	44	573	0	0	0
243	chr9:92443416-92528796			0	0	0
244	chr9:92678796-133073060	126	1818	0	0	0
245	chr9:133223060-137041193	18	323	0	0	0
246	chr9:137091193-139166997	7	110	0	0	0
247	chr9:139216997-140200000	5	72	0	0	0
248	chr9:140250000-141000000	2	30	0	0	0
249	chr10:60000-17974675	36	543	0	0	0
250	chr10:18024675-38818835	35	541	0	0	0
251	chr10:42746000-46426964	9	155	0	0	0
252	chr10:47529169-47792476	1	16	0	0	0
253	chr10:47892476-48055707			0	0	0
254	chr10:48105707-49095536			0	0	0
255	chr10:49195536-51137410	5	74	0	0	0
256	chr10:51187410-51398845			0	0	0
257	chr10:51448845-125869472	190	2626	0	0	0
258	chr10:125919472-128616069	6	102	0	0	0
259	chr10:128766069-133381404	6	68	0	0	0
260	chr10:133431404-133677527			0	0	0
261	chr10:133727527-135477000	6	86	0	0	0
262	chr11:60000-580000	2	46	0	0	0
263	chr11:590000-900000			0	0	0
264	chr11:1212759-3650000	11	128	0	0	0
265	chr11:3700000-48500000	103	1440	0	0	0
266	chr11:55100000-69089801	58	877	0	0	0
267	chr11:69139801-69724695	1	17	0	0	0
268	chr11:69774695-87688378	37	565	0	0	0
269	chr11:87738378-96287584	16	262	0	0	0
270	chr11:96437584-134946516	85	1056	0	0	0
271	chr12:60000-95739			0	0	0
272	chr12:145739-7189876	21	327	0	0	0
273	chr12:7239876-34856694	49	722	0	0	0
274	chr12:38150000-66400000	87	1307	0	0	0
275	chr12:66500000-109373470	81	1145	0	0	0
276	chr12:109423470-122530623	42	715	0	0	0
277	chr12:122580623-132706992	21	351	0	0	0
278	chr12:132806992-133841895	4	81	0	0	0
279	chr13:19020000-86760324	119	1631	0	0	0
280	chr13:86910324-112353994	25	393	0	0	0
281	chr13:112503994-114325993	7	122	0	0	0
282	chr13:114425993-114639948	1	19	0	0	0
283	chr13:114739948-115109878	2	30	0	0	0
284	chr14:19050000-107289540	233	3234	0	0	0
285	chr15:20000000-20894633	4	87	0	0	0
286	chr15:20935075-21398819			0	0	0
287	chr15:21885000-22212114	1	23	0	0	0
288	chr15:22262114-22596193			0	0	0
289	chr15:22646193-23514853	4	31	0	0	0
290	chr15:23564853-29159443	6	85	0	0	0
291	chr15:29209443-77800000	164	2238	0	0	0
292	chr15:77912000-82829645	15	219	0	0	0
293	chr15:82879645-84984473	6	71	0	0	0
294	chr15:85034473-102521392	36	533	0	0	0
295	chr16:60000-8636921	29	486	0	0	0
296	chr16:8686921-32000000	75	1219	0	0	0
297	chr16:46510000-88389383	117	1648	0	0	0
298	chr16:88439383-90294753	11	164	0	0	0
299	chr17:0-296626			0	0	0
300	chr17:396626-21566608	77	1193	0	0	0
301	chr17:21666608-22200000	1	5	0	0	0
302	chr17:25263006-34675848	32	509	0	0	0
303	chr17:34725848-41350000	36	575	0	0	0
304	chr17:41450000-62410760	75	1193	0	0	0
305	chr17:62460760-77546461	46	710	0	0	0
306	chr17:77596461-79709049	10	162	0	0	0
307	chr17:79759049-81195210	7	116	0	0	0
308	chr17_ctg5_hap1:0-1256794			0	0	0
309	chr17_ctg5_hap1:1306794-1588968			0	0	0
310	chr17_ctg5_hap1:1638968-1680828			0	0	0
311	chr18:200000-15000000	29	428	0	0	0
312	chr18:18521000-52059136	48	682	0	0	0
313	chr18:52209136-72283353	29	348	0	0	0
314	chr18:72333353-75721820	4	56	0	0	0
315	chr18:75771820-78017248	4	66	0	0	0
316	chr19:60000-7346004	37	624	0	0	0
317	chr19:7396004-8687198	8	138	0	0	0
318	chr19:8737198-20523415	65	1151	0	0	0
319	chr19:20573415-24631782	19	282	0	0	0
320	chr19:28000000-59118983	154	2670	0	0	0
321	chr20:60000-25500000	46	730	0	0	0
322	chr20:29850000-34897085	25	408	0	0	0
323	chr20:34947085-61091437	71	1124	0	0	0
324	chr20:61141437-61213369			0	0	0
325	chr20:61263369-62965520	9	152	0	0	0
326	chr21:9411193-9595548			0	0	0
327	chr21:9645548-9775437			0	0	0
328	chr21:10084920-10215976			0	0	0
329	chr21:10365976-10647896			0	0	0
330	chr21:14338129-42955559	48	733	0	0	0
331	chr21:43005559-44632664	7	95	0	0	0
332	chr21:44682664-48119895	15	242	0	0	0
333	chr22:16050000-16697850	1	1	0	0	0
334	chr22:16847850-18600000	7	101	0	0	0
335	chr22:18900000-20509431	7	103	0	0	0
336	chr22:20700000-50364777	99	1522	0	0	0
337	chr22:50414777-51244566	5	78	0	0	0
338	chrX:60000-94821			0	0	0
339	chrX:144821-231384	1	23	0	0	0
340	chrX:281384-1047557	2	25	0	0	0
341	chrX:1097557-1134113			0	0	0
342	chrX:1184113-1264234	1	15	0	0	0
343	chrX:1314234-2068238	2	44	0	0	0
344	chrX:2118238-7623882	4	53	0	0	0
345	chrX:7673882-10738674	3	2	0	0	0
346	chrX:10788674-37098256	15	56	0	0	0
347	chrX:37148256-49242997	17	112	0	0	0
348	chrX:49292997-49974173	1	0	0	0	0
349	chrX:50024173-52395914	2	2	0	0	0
350	chrX:52445914-58500000	10	81	0	0	0
351	chrX:62000000-76653692	12	61	0	0	0
352	chrX:76703692-113517668	16	48	0	0	0
353	chrX:113567668-115682290	2	23	0	0	0
354	chrX:115732290-120013235	5	8	0	0	0
355	chrX:120063235-143507324	13	61	0	0	0
356	chrX:143557324-148906424	2	5	0	0	0
357	chrX:148956424-149032062			0	0	0
358	chrX:149082062-152277099	3	8	0	0	0
359	chrX:152327099-155260560	11	64	0	0	0
360	chrY:10000-44821			0	0	0
361	chrY:94821-181384			0	0	0
362	chrY:231384-997557			0	0	0
363	chrY:1047557-1084113			0	0	0
364	chrY:1134113-1214234			0	0	0
365	chrY:1264234-2018238			0	0	0
366	chrY:2068238-8914955	1	0	0	0	0
367	chrY:8964955-9241322	1	14	0	0	0
368	chrY:13104553-13143954	1	17	0	0	0
369	chrY:14000000-20143885			0	0	0
370	chrY:20193885-22369679	2	13	0	0	0
371	chrY:22419679-23901428			0	0	0
372	chrY:23951428-28819361	2	22	0	0	0
373	chrY:58819361-58917656			0	0	0

Output: predicted group-specific peaks

These are great candidates for re-labeling.

aorta

168 genomic regions were predicted to have a common peak in the aorta group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr14:94235704-94590834	35513	110390.91
2	chr11:133540996-134041136	50014	100698.42
3	chr11:10052650-11256740	120409	89906.16
4	chr17:36364610-36917700	55309	85428.05
5	chr10:88148660-88770490	62183	75985.68
6	chr20:47915289-48374169	45888	75299.90
7	chr1:3167930-3504640	33671	72867.27
8	chrX:64909997-65969587	105959	70507.88
9	chr1:3231902-3614192	38229	69306.05
10	chr17:12326683-12951453	62477	67536.04
11	chr1:29277124-29966344	68922	66439.85
12	chr10:125262814-125801424	53861	64199.58
13	chr1:159975567-160225817	25025	61885.00
14	chr9:14159487-15433687	127420	59635.77
15	chrX:24278411-24805571	52716	58876.42
16	chr19:23012536-23323616	31108	58360.68
17	chr19:22196884-23116214	91933	56912.01
18	chr16:50136358-51133058	99670	56151.73
19	chrX:9475154-9868404	39325	55729.23
20	chr6:55343696-56624856	128116	53527.94
21	chr8:95200763-95334563	13380	52701.24
22	chr1:171084493-171256833	17234	51678.08
23	chr15:75894580-76058970	16439	50560.13
24	chr2:127248571-127631311	38274	50257.73
25	chrX:107173263-108571193	139793	49850.60
26	chr3:73323105-73560865	23776	49661.55
27	chr17:43419451-43625211	20576	49621.48
28	chr4:54933808-55358118	42431	49421.49
29	chr1:236667321-237144061	47674	49141.31
30	chr20:25345726-25538506	19278	48949.73
31	chr3:35650579-37368339	171776	47934.62
32	chrX:47323955-48156265	83231	47856.39
33	chr7:131365045-132360045	99500	47101.99
34	chrX:9655037-10491167	83613	46289.13
35	chr15:92287910-93066150	77824	46137.07
36	chr13:101352781-102124661	77188	44769.14
37	chr10:121016829-121384069	36724	44219.70
38	chr1:161191325-161590025	39870	43601.26
39	chrX:100042790-101384500	134171	42553.80
40	chr7:198708-387598	18889	42306.16
41	chrX:18621289-19261089	63980	39272.97
42	chr14:23353212-23888782	53557	38875.91
43	chr20:36695662-37021892	32623	38799.00
44	chr11:57261356-57495796	23444	38436.11
45	chr4:156087316-157255686	116837	37944.22
46	chr1:183648415-184102995	45458	37719.04
47	chr19:8521393-8801163	27977	37340.04
48	chr1:62338229-62870439	53221	36866.97
49	chr2:174079727-174176117	9639	36408.50
50	chr14:91982934-92761074	77814	35826.98
51	chr11:94140022-94532422	39240	35732.47
52	chr7:149357736-149491386	13365	35162.85
53	chr4:100170168-100299178	12901	35132.59
54	chr10:96726683-97807213	108053	34919.21
55	chr2:107217611-107659431	44182	34911.48
56	chr2:65135233-65346323	21109	34275.18
57	chr7:63351153-63708583	35743	33329.60
58	chr5:167326664-169007494	168083	32993.58
59	chr7:23159817-23446067	28625	32550.36
60	chr1:226843043-227328173	48513	32425.87
61	chr12:54564827-55311907	74708	32290.72
62	chr1:153594316-153726066	13175	32276.34
63	chr20:52263918-54104128	184021	32047.14
64	chr2:197202486-198637846	143536	31701.60
65	chr4:30680172-30765842	8567	31649.94
66	chr15:79015770-79151870	13610	30668.51
67	chr11:125294816-125413876	11906	30417.03
68	chr9:123570810-123780330	20952	30266.71
69	chr2:74073972-74207212	13324	30146.83
70	chr3:185074358-186830738	175638	30075.00
71	chr1:115433439-115764059	33062	29805.64
72	chr7:73525422-73544902	1948	29683.32
73	chr1:32002523-32096473	9395	29490.42
74	chr2:233428771-233647731	21896	29403.74
75	chr15:65267395-65433115	16572	29230.80
76	chr3:124981760-126171560	118980	28844.26
77	chr13:31408442-31576152	16771	28811.23
78	chr9:112450754-113952204	150145	28614.79
79	chr3:123635482-124697692	106221	28200.57
80	chr12:66321628-66912658	59103	27791.31
81	chr3:13405474-13664534	25906	27781.99
82	chrX:47189305-47442205	25290	27650.85
83	chr9:71893011-72254441	36143	27429.98
84	chr19:47425098-47571868	14677	27376.98
85	chr3:171185489-171471959	28647	27093.07
86	chr9:101449094-102146624	69753	26328.68
87	chr18:32641888-32786268	14438	26266.79
88	chr2:6880675-7100625	21995	25776.80
89	chr2:219639924-219722244	8232	25609.39
90	chr1:201638875-202142075	50320	25405.53
91	chr2:31315722-31635202	31948	25105.60
92	chr1:184560024-185000114	44009	25100.68
93	chr13:41965941-42112371	14643	24936.86
94	chr9:91541242-91691172	14993	24305.92
95	chr7:47115106-48033136	91803	24302.62
96	chr1:220329101-221255251	92615	24273.45
97	chr7:131775897-132656627	88073	24128.65
98	chr16:67384461-67572711	18825	23901.02
99	chr16:57507801-57591031	8323	23818.22
100	chr22:39419503-39651883	23238	23737.63
101	chr10:53881127-54213907	33278	23606.40
102	chr3:1879589-2459459	57987	23585.91
103	chr11:64641735-64956125	31439	23410.38
104	chr7:65475865-65625255	14939	23168.08
105	chr16:84995444-85228454	23301	23075.85
106	chr15:43945215-44348715	40350	22929.75
107	chr12:5232964-5918214	68525	22759.34
108	chr17:77024320-77133670	10935	22549.15
109	chr10:5662358-5702418	4006	22157.17
110	chr1:45923093-46131303	20821	22017.73
111	chr4:120271958-120780958	50900	21998.87
112	chr15:74671144-74816644	14550	21880.61
113	chr1:78066632-78471592	40496	21446.35
114	chr7:158169893-159569213	139932	21430.81
115	chr10:90825036-91155036	33000	21423.52
116	chr6:160738063-160917663	17960	20656.22
117	chr20:43187905-43308315	12041	20469.84
118	chr12:75139644-76315794	117615	20466.10
119	chr6:31708482-31791112	8263	20343.52
120	chr9:129811266-130395556	58429	20136.76
121	chr7:73484792-74457462	97267	20126.20
122	chr10:129758321-129978121	21980	19946.45
123	chr20:23556854-23668994	11214	19873.48
124	chr11:27308284-27487384	17910	19811.17
125	chr7:23611906-23856846	24494	19666.32
126	chr3:112007712-112128672	12096	19612.13
127	chr2:33339518-33491748	15223	19573.63
128	chr3:123857574-124271224	41365	19437.59
129	chr8:120894923-121452753	55783	19402.57
130	chr10:74475850-74792780	31693	19112.25
131	chr11:63966365-64089905	12354	19003.68
132	chr5:121338521-122195491	85697	18897.00
133	chr2:74194365-74445865	25150	18669.61
134	chr10:8007799-8104159	9636	18668.41
135	chr11:128345297-128973477	62818	18544.16
136	chr3:48619965-48713185	9322	18022.35
137	chr5:32376908-33137198	76029	18022.14
138	chr9:116119721-116185521	6580	17885.81
139	chr14:103164332-103546872	38254	17849.65
140	chr18:59084379-59951809	86743	17581.70
141	chr6:21009319-21427639	41832	17376.43
142	chr5:158088175-158185195	9702	16955.07
143	chr14:105572401-106111301	53890	16885.96
144	chr4:47965103-48344143	37904	16658.81
145	chr7:30432134-30549424	11729	16603.71
146	chr2:75139818-75244188	10437	16405.58
147	chr6:145893367-146005657	11229	16053.53
148	chr16:68539024-69326924	78790	16036.47
149	chr10:60326239-60811809	48557	15774.24
150	chr14:67148561-67668241	51968	15735.58
151	chr14:91123525-91357975	23445	15492.50
152	chr13:52267418-52792038	52462	15428.85
153	chr11:46341420-46448130	10671	15019.40
154	chr4:73734144-74495934	76179	15012.14
155	chr12:72020190-72172530	15234	14489.31
156	chr5:96037199-96433119	39592	14383.44
157	chr16:56851469-57293229	44176	14076.91
158	chr10:65210223-65530693	32047	13569.81
159	chr2:239830508-240730668	90016	13276.58
160	chr18:56766561-56877501	11094	12730.12
161	chr4:148940550-149056840	11629	12355.47
162	chr11:128778368-128911468	13310	12109.97
163	chr10:74188060-74436910	24885	12050.29
164	chr1:45892566-46475786	58322	12000.50
165	chr4:95763655-96507445	74379	11953.50
166	chr14:105820184-106033834	21365	10220.79
167	chr2:87440606-88524276	108367	6662.79
168	chr13:33474469-34174549	70008	5264.46

0 genomic regions were predicted to have no peaks in the aorta group, with a peak in all other groups.

aorta_Input

1 genomic region was predicted to have a common peak in the aorta_Input group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr2:109910502-110949522	103902	21895.10

14 genomic regions were predicted to have no peaks in the aorta_Input group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr15:24449212-26133752	168454	1318319.33
2	chr8:86506457-88449607	194315	929953.81
3	chr3:30209036-31188326	97929	460553.12
4	chr16:11575908-12362688	78678	431248.18
5	chrX:1194493-1875643	68115	399720.22
6	chr19:52523289-52903699	38041	349045.93
7	chr22:39677155-39744945	6779	322133.28
8	chr1:8827146-9026496	19935	296154.25
9	chr1:13582154-14618004	103585	263817.49
10	chr2:64530736-66579186	204845	257283.97
11	chr4:129547099-130004289	45719	252050.20
12	chr20:57397669-57560859	16319	210417.95
13	chr3:186473820-186536520	6270	208665.86
14	chr5:80169745-82986285	281654	114418.59

colon

5 genomic regions were predicted to have a common peak in the colon group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr10:45865450-46422520	55707	145645.04
2	chr9:73200286-73412096	21181	40244.86
3	chr21:43520269-44752659	123239	33586.20
4	chr12:63716674-64092514	37584	27203.50
5	chr18:4942325-5935045	99272	11392.92

0 genomic regions were predicted to have no peaks in the colon group, with a peak in all other groups.

colon_Input

21 genomic regions were predicted to have a common peak in the colon_Input group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr11:114374787-114596187	22140	82789.80
2	chr5:98336730-98763020	42629	61054.61
3	chr16:28140677-28501347	36067	52329.84
4	chr19:20821405-21326485	50508	50160.96
5	chr12:79729756-79996566	26681	44521.84
6	chr11:66967842-67886532	91869	44088.62
7	chr16:29026812-29229742	20293	42394.86
8	chr16:29580292-29593002	1271	37919.36
9	chr10:75286900-75532280	24538	36631.22
10	chr9:89745664-91145344	139968	30488.93
11	chr14:106078808-106088518	971	28907.45
12	chr14:101048231-102966531	191830	24637.99
13	chr11:18349938-19164958	81502	24444.01
14	chr16:88154409-88505119	35071	20328.08
15	chr1:117635467-118764007	112854	18381.53
16	chr8:43073256-43116596	4334	17637.80
17	chr16:73273580-73289910	1633	17115.32
18	chr11:10096668-10568748	47208	16720.62
19	chr9:90551719-92183549	163183	16095.71
20	chr3:129134047-130192757	105871	15565.56
21	chr6:61839336-61975916	13658	657.47

41 genomic regions were predicted to have no peaks in the colon_Input group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr17:34171051-35602271	143122	1812916.07
2	chr17:44472349-45165869	69352	924323.36
3	chr7:102606322-103342612	73629	902496.82
4	chr9:134719066-135646586	92752	876345.45
5	chr7:154767184-156243704	147652	811867.87
6	chr2:229924225-231487305	156308	808838.22
7	chr19:41271256-42282606	101135	802289.11
8	chr12:132852633-134548483	169585	775881.63
9	chr9:135006416-136031676	102526	706513.57
10	chr16:31598522-32235522	63700	691291.18
11	chr7:72230941-73613251	138231	646346.35
12	chr5:86270330-87064770	79444	645107.33
13	chr4:-97271-1050689	114796	633136.37
14	chr11:2460601-3580241	111964	612518.31
15	chr15:72458539-73579969	112143	597129.06
16	chr7:156339939-157657659	131772	584384.17
17	chr2:99268424-100746344	147792	561116.39
18	chr10:14321478-15549018	122754	552875.16
19	chr1:1065780-2438690	137291	544925.82
20	chr17:1403382-1737282	33390	507895.00
21	chr17:74785044-75568664	78362	498883.80
22	chr22:38758525-39018045	25952	461328.11
23	chr2:128386824-129416954	103013	439032.38
24	chr2:131327121-132385501	105838	415822.44
25	chr12:108834618-109591488	75687	412530.55
26	chr19:44872952-45107752	23480	366358.73
27	chr8:56237396-57150686	91329	364412.48
28	chr20:62747471-63054471	30700	358811.37
29	chr15:78024262-78611822	58756	354453.95
30	chr7:4996257-5201617	20536	330844.10
31	chr20:48754954-49582004	82705	321728.68
32	chr19:8343808-8727798	38399	293509.08
33	chr13:27525411-28834591	130918	286879.54
34	chr7:4933824-6543744	160992	281792.89
35	chr2:232270009-232375929	10592	267522.38
36	chr11:64466886-64607806	14092	266409.75
37	chr19:12597533-12679453	8192	259530.74
38	chr16:31122324-31278704	15638	256785.96
39	chr6:27360985-27485965	12498	215551.70
40	chr21:15754641-16994121	123948	204207.62
41	chr6:108245158-109662438	141728	165751.54

skeletalMuscle

332 genomic regions were predicted to have a common peak in the skeletalMuscle group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr12:24337717-25726177	138846	206084.83
2	chr8:66820225-67309035	48881	190621.58
3	chr10:131050359-132343889	129353	172871.55
4	chr6:44806806-46107216	130041	171494.06
5	chr9:18355208-18620158	26495	146519.94
6	chr7:36126868-36800748	67388	145364.47
7	chrX:45122480-46189040	106656	139887.89
8	chr1:221676680-222109120	43244	139561.79
9	chr6:10889499-12433069	154357	138758.48
10	chr14:85587576-86510946	92337	133775.81
11	chr5:36240284-37057334	81705	132044.56
12	chr2:149090121-150883221	179310	127159.98
13	chr9:36076554-37181714	110516	120501.93
14	chrX:65912093-67808193	189610	116919.01
15	chr11:125297088-128161788	286470	106330.49
16	chr18:55704899-56686909	98201	104814.86
17	chr1:198334785-199372875	103809	99449.28
18	chr12:65578172-67007482	142931	99127.29
19	chr6:5349743-7114323	176458	96308.39
20	chr8:122492771-122781691	28892	91431.37
21	chr12:51840944-52502374	66143	90906.78
22	chr1:214516685-215114855	59817	90854.86
23	chr10:69343702-70507462	116376	90589.65
24	chr15:92596499-93356849	76035	88442.37
25	chr21:36182887-36613247	43036	86747.60
26	chrX:48866403-50692323	182592	84519.63
27	chr20:29953883-30778523	82464	82124.35
28	chrY:6680307-7737597	105729	79683.54
29	chr8:36730332-37906522	117619	79007.25
30	chr8:128821114-129343724	52261	78616.34
31	chr4:176883726-177439756	55603	78381.39
32	chr5:119983310-120068210	8490	76724.35
33	chr1:210825887-211700107	87422	76430.62
34	chr11:12342869-12728989	38612	75389.56
35	chr3:26432308-28008968	157666	74981.65
36	chr9:112883057-114101857	121880	74758.90
37	chr7:115728909-117028199	129929	74730.39
38	chr4:168907478-170349328	144185	72703.84
39	chr16:87687235-88076665	38943	72648.87
40	chr18:25200147-25916047	71590	71954.94
41	chr11:46098303-46547133	44883	71925.38
42	chr10:14474808-16178548	170374	70900.27
43	chr2:175524094-175713054	18896	70027.03
44	chr1:119183089-119709179	52609	69949.40
45	chr5:125818948-127606798	178785	69344.10
46	chr12:77192668-77676858	48419	68093.76
47	chr5:97993003-98245403	25240	67722.88
48	chr2:181961146-182771306	81016	66853.09
49	chr4:57683205-58216455	53325	66381.84
50	chr4:142517276-143992076	147480	66178.52
51	chr3:8629284-8957444	32816	64093.18
52	chr3:120534901-121864321	132942	63515.57
53	chr15:74537711-74878181	34047	63415.22
54	chrX:108548444-109324664	77622	63099.61
55	chr1:204096316-205659316	156300	62811.47
56	chr6:51936494-52082124	14563	62475.62
57	chr8:76771686-78610886	183920	60971.52
58	chr22:44262979-44820009	55703	60456.68
59	chr2:149468721-151066431	159771	60398.04
60	chrX:56317955-57291895	97394	60083.06
61	chr1:162865503-163705363	83986	60079.59
62	chr4:47547979-47716049	16807	57349.27
63	chr18:59041275-59463715	42244	57164.61
64	chr5:35718616-36026926	30831	56999.44
65	chr1:200203042-200905722	70268	53342.21
66	chr10:124438380-124775290	33691	52941.27
67	chr17:12901495-13996755	109526	52708.24
68	chr18:65126097-65229667	10357	52146.75
69	chr6:141914048-143477898	156385	51715.70
70	chr2:201187676-201828146	64047	51705.29
71	chrX:36653306-37896596	124329	51623.18
72	chr9:127173596-127724676	55108	51416.78
73	chr6:80523153-80949293	42614	51263.70
74	chr15:83795042-84079542	28450	51085.60
75	chr4:85744328-87197118	145279	50172.39
76	chr15:80964369-81208329	24396	50129.95
77	chr7:54797767-55443667	64590	49780.14
78	chr12:70255919-71711269	145535	48913.69
79	chr5:172690603-172804713	11411	48876.25
80	chr4:110509727-111619377	110965	48279.62
81	chr11:121653797-122192147	53835	47574.55
82	chr1:242205034-243567544	136251	47143.92
83	chr2:75390153-76111903	72175	46735.63
84	chr10:94121414-94660164	53875	46156.04
85	chrX:83855366-84755736	90037	45948.55
86	chr15:40119777-40861947	74217	45879.75
87	chr2:206496656-208302236	180558	45774.70
88	chr3:98441538-98765758	32422	45269.50
89	chr1:41285752-42815052	152930	45094.35
90	chr11:12375143-12431823	5668	45019.49
91	chrX:154336714-154581654	24494	44685.50
92	chr3:154631425-155005605	37418	44092.36
93	chr3:55423791-55589841	16605	43975.94
94	chr8:10448765-11580515	113175	43803.57
95	chr1:21517700-22225040	70734	43781.32
96	chr2:162581064-163166634	58557	43573.80
97	chr18:23607391-24553711	94632	43412.25
98	chr9:20819200-22220220	140102	42982.72
99	chr17:38410445-38707015	29657	42641.73
100	chrX:79721428-81310388	158896	42104.13
101	chr6:147533802-148194142	66034	41701.27
102	chr10:72038500-72917340	87884	41647.12
103	chr10:112210224-112326294	11607	41621.79
104	chrX:103242047-103621277	37923	41364.25
105	chr2:189718676-190307176	58850	41025.53
106	chr3:61158522-62025912	86739	40926.11
107	chr11:1839759-1975149	13539	40665.28
108	chr3:182744384-183242534	49815	40027.57
109	chr6:6826223-7456453	63023	39704.04
110	chr1:241522048-242032048	51000	39624.15
111	chr9:117865365-118945065	107970	39460.86
112	chr8:19837558-20425038	58748	39151.97
113	chr1:35915937-36489787	57385	38936.29
114	chr2:234641070-234861770	22070	38554.97
115	chr10:63562147-64408677	84653	38553.75
116	chr16:19742729-20018629	27590	38394.96
117	chr1:202897294-202967074	6978	38381.24
118	chr17:78737183-79383733	64655	38144.04
119	chrX:129057042-129671922	61488	37930.36
120	chr5:110922548-111230348	30780	37300.81
121	chr5:73868116-73987136	11902	37283.02
122	chrX:66381579-68295159	191358	37190.10
123	chr8:10591315-12092865	150155	37079.93
124	chr20:59751655-59925005	17335	37054.81
125	chr19:22917863-23674593	75673	36854.95
126	chr6:17231603-17345983	11438	36835.62
127	chr5:58738001-59557001	81900	36797.72
128	chr12:25771038-26491558	72052	36605.54
129	chr2:113368429-113645959	27753	36460.25
130	chr3:169830733-171111513	128078	36371.13
131	chr1:227485304-227504404	1910	36087.28
132	chr13:102189865-102529345	33948	36029.13
133	chr2:175590777-175748037	15726	35738.28
134	chr1:201244673-201427803	18313	35651.97
135	chr9:5389869-5537659	14779	35599.00
136	chr18:51753511-52047001	29349	35561.15
137	chr2:96841856-97209926	36807	35367.60
138	chr8:31393766-32908386	151462	35238.08
139	chr6:33575493-33827033	25154	34989.93
140	chr1:56826013-57224143	39813	34238.26
141	chr2:5350944-6250164	89922	34072.55
142	chr5:159812562-159894882	8232	33846.13
143	chr9:103309825-103388355	7853	33755.08
144	chr3:143597597-143825447	22785	33671.22
145	chr16:54807581-55112931	30535	33628.19
146	chr12:100705580-101289720	58414	33620.45
147	chrX:10156588-10725978	56939	33394.62
148	chr11:87794890-88293650	49876	33177.12
149	chr9:4925219-5869829	94461	33137.01
150	chr1:201025963-201533253	50729	33072.78
151	chr5:64389643-65092073	70243	32998.28
152	chr10:62432657-62670427	23777	32901.28
153	chr1:173045522-173277762	23224	32833.46
154	chr4:142731270-143198130	46686	32831.42
155	chr4:114708311-115066831	35852	32612.48
156	chr18:25506625-25958095	45147	32573.11
157	chr17:62411759-62852539	44078	32546.25
158	chr10:117487864-118210254	72239	32538.41
159	chr2:45128858-45654278	52542	32493.26
160	chr6:110291910-110554040	26213	32360.45
161	chr2:101642263-102455913	81365	32253.47
162	chr1:202900843-203338243	43740	32147.95
163	chrX:138440111-139488041	104793	32035.31
164	chr4:114755058-115717908	96285	31945.45
165	chr9:21252467-21403137	15067	31820.37
166	chr4:109339672-110207312	86764	31793.42
167	chr16:88199282-88757542	55826	31688.21
168	chr10:102044174-102185624	14145	31551.59
169	chr3:113955317-114658027	70271	31497.88
170	chr14:51592432-52546372	95394	31491.47
171	chr17:9033199-9295989	26279	31441.31
172	chr1:95620933-95800863	17993	31353.75
173	chr3:149310294-149427944	11765	31215.06
174	chr16:84343711-84901891	55818	31153.71
175	chr5:150056704-150284134	22743	31058.86
176	chr5:138561868-138670978	10911	30977.51
177	chr1:68831905-69068665	23676	30711.68
178	chr13:109547484-110281754	73427	30678.64
179	chr2:157970084-158338484	36840	30106.87
180	chr13:21529721-21720141	19042	29957.98
181	chr11:19534004-19726574	19257	29870.95
182	chr9:78860840-79336820	47598	29587.50
183	chr12:47021272-47324602	30333	29371.81
184	chr3:106904050-107034970	13092	29362.68
185	chr2:203867851-205355441	148759	28849.46
186	chr8:37695167-38124057	42889	28720.43
187	chr8:71509694-72904974	139528	28546.81
188	chr8:98487795-99182055	69426	28497.49
189	chr4:86732837-87089257	35642	28462.42
190	chr8:57590253-59205263	161501	28282.73
191	chr11:76510611-77107471	59686	28189.77
192	chr5:92454977-93278107	82313	28153.11
193	chr2:40550883-40780973	23009	28045.22
194	chr18:52986819-53473069	48625	27987.83
195	chr8:69430893-70482683	105179	27980.32
196	chr11:17692280-17803380	11110	27961.23
197	chr7:41665550-41798740	13319	27850.53
198	chr12:105390052-106137672	74762	27452.50
199	chr4:80774713-80877673	10296	27443.79
200	chr18:67614512-67766982	15247	27390.27
201	chr16:14268293-14558213	28992	27324.00
202	chr4:109852362-110526332	67397	27265.57
203	chr11:6453344-7525034	107169	27222.55
204	chr5:82215145-82499075	28393	27005.63
205	chr22:44961521-45267211	30569	26880.05
206	chr4:157678574-158405784	72721	26822.55
207	chr5:59597079-60312429	71535	26739.55
208	chr4:151951406-153283036	133163	26583.69
209	chr3:105091414-105096304	489	26390.39
210	chr10:129015332-130448772	143344	26315.33
211	chr14:29896244-30805764	90952	26284.15
212	chr8:78936307-80004487	106818	26211.76
213	chr14:23403697-23485157	8146	26183.96
214	chr2:210908178-212070848	116267	26082.36
215	chr6:161211746-162087286	87554	25986.82
216	chr2:39789555-40970685	118113	25790.92
217	chr5:131201527-131638767	43724	25775.28
218	chr4:120866863-121096773	22991	25700.80
219	chr4:170703821-171155381	45156	25689.59
220	chr14:72934968-73350838	41587	25571.26
221	chr9:71491036-71850586	35955	25434.71
222	chr4:111448259-111645429	19717	25323.87
223	chr6:143964121-144621831	65771	25017.22
224	chr1:99966291-100323581	35729	24491.09
225	chr1:89469950-90621740	115179	24332.22
226	chr9:120642964-122053984	141102	24287.50
227	chr2:206965913-207362743	39683	24271.01
228	chr1:200315583-200429873	11429	24243.21
229	chr4:81003965-81232815	22885	23814.74
230	chr12:47963227-48569597	60637	23805.81
231	chr21:39155313-40101873	94656	23804.61
232	chr3:150325086-150606686	28160	23692.67
233	chr7:151401853-151411323	947	23536.01
234	chr8:49808742-49853902	4516	23193.10
235	chr8:122691030-123572060	88103	23097.67
236	chr5:171834458-172354548	52009	23017.19
237	chr20:5832570-6324380	49181	22992.10
238	chr2:196790111-197429271	63916	22833.78
239	chr12:16408048-17051668	64362	22756.93
240	chr8:77302038-77361168	5913	22596.11
241	chr4:83184324-83992874	80855	22593.85
242	chr2:102258183-102384203	12602	22450.61
243	chr1:230180950-230248270	6732	22369.74
244	chr15:40550642-40698412	14777	22333.19
245	chr20:52765392-52900102	13471	22239.40
246	chr2:192502388-192595868	9348	22197.47
247	chr6:144498990-144743080	24409	22186.35
248	chr8:91458636-91819746	36111	22140.91
249	chr1:47422631-48070091	64746	22121.94
250	chr7:20153099-20703709	55061	22103.10
251	chr18:18685827-18692817	699	22037.17
252	chr7:96393298-97171888	77859	22020.51
253	chr21:30254181-30811871	55769	21948.93
254	chr14:78705606-80317846	161224	21931.48
255	chr3:33189369-33498789	30942	21880.84
256	chr3:188245056-189042916	79786	21830.01
257	chr15:75184564-75475374	29081	21751.21
258	chr4:177496368-177889568	39320	21736.85
259	chr2:47860892-48354492	49360	21691.51
260	chr7:6258868-6355008	9614	21570.68
261	chr12:484745-606245	12150	21499.87
262	chr3:62244273-62907593	66332	21448.25
263	chr1:51703737-52546637	84290	21388.43
264	chr9:128391761-128655501	26374	21258.17
265	chr11:125710123-125820123	11000	20821.01
266	chr2:217974685-218355055	38037	20802.36
267	chr1:202821964-203235964	41400	20694.66
268	chr9:121132918-122386548	125363	20675.47
269	chr6:10897719-11338059	44034	20487.87
270	chr13:25201842-27481832	227999	20355.63
271	chr13:80869268-80948768	7950	20200.95
272	chr2:204502148-206511608	200946	20051.39
273	chr7:136952230-137215610	26338	19980.85
274	chr16:80156307-80487797	33149	19865.19
275	chr3:160168335-160385965	21763	19739.82
276	chr15:90992790-91658630	66584	19721.20
277	chr7:134184180-134517760	33358	19716.87
278	chr8:75231185-75322775	9159	19669.03
279	chr5:68415494-68523124	10763	19608.68
280	chr4:170151762-170223052	7129	19392.90
281	chr6:95745069-96316209	57114	19145.80
282	chr4:121198594-122043164	84457	19092.89
283	chr1:109950735-110123825	17309	19064.31
284	chr10:91036127-91702497	66637	19038.61
285	chr11:124564794-124717774	15298	18965.45
286	chr7:117783510-117876830	9332	18956.68
287	chr4:99208919-99899279	69036	18502.02
288	chr5:86200680-86628350	42767	18499.93
289	chr5:173528147-174897737	136959	18133.43
290	chr1:182829544-183616594	78705	18031.05
291	chr14:54958627-55130297	17167	18018.05
292	chr8:95170696-95632696	46200	17764.08
293	chr10:101318937-101427487	10855	17548.03
294	chr12:56714697-56921017	20632	17478.64
295	chr21:17471412-18450232	97882	17439.32
296	chr9:68449822-69069142	61932	17386.94
297	chr11:47479058-48643878	116482	17266.10
298	chr14:68295460-69874100	157864	17148.94
299	chr5:89745804-89888104	14230	17121.56
300	chr3:119310330-120256740	94641	17080.70
301	chr2:128805473-129296453	49098	17001.11
302	chr13:98300761-99401891	110113	16668.58
303	chr11:16409303-17288393	87909	16566.19
304	chr17:74511539-74606879	9534	16456.65
305	chr3:49112069-49303379	19131	16238.55
306	chr5:72351604-73621894	127029	16214.17
307	chr3:129042433-129180403	13797	16181.91
308	chr5:110744130-110924180	18005	16027.63
309	chr2:226909011-228655951	174694	15716.26
310	chr13:23659545-24734795	107525	15609.73
311	chr2:173810631-174102971	29234	15559.86
312	chr3:153679668-154037088	35742	15499.18
313	chr3:118923229-119126749	20352	15441.47
314	chr2:46640367-47283567	64320	15374.60
315	chr6:121481802-121778512	29671	14978.00
316	chr6:87885738-88225508	33977	14795.11
317	chr16:71491764-71530384	3862	14781.03
318	chr5:139652499-139782489	12999	14653.17
319	chr3:149187718-149290458	10274	14468.01
320	chr2:107391942-108586812	119487	14426.39
321	chr6:52396798-52692328	29553	14385.02
322	chr16:79598493-79659763	6127	13876.83
323	chr5:52337940-52458450	12051	13836.79
324	chr18:20779553-22160003	138045	13794.87
325	chr5:36729190-37025770	29658	13135.79
326	chr2:36245641-36999681	75404	13120.84
327	chr8:131268605-131449495	18089	12990.75
328	chr4:85829891-85871381	4149	11820.49
329	chr8:125642900-126670580	102768	11019.04
330	chr5:60477721-60815591	33787	10158.82
331	chr11:121930687-121990337	5965	9271.94
332	chr1:148006374-148012514	614	7306.31

16 genomic regions were predicted to have no peaks in the skeletalMuscle group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr1:147140937-148397537	125660	1770229.59
2	chr16:22239319-23096549	85723	1304329.24
3	chr9:37906532-39483992	157746	1174009.26
4	chr4:-112419-216870	32929	1158063.11
5	chr9:68962728-69036328	7360	1148946.37
6	chr8:12164372-12678912	51454	869281.85
7	chr1:145074109-146299719	122561	846680.81
8	chr16:21382243-21672103	28986	704853.22
9	chr10:127521098-127639718	11862	602600.94
10	chr7:152035644-152176974	14133	576521.15
11	chr16:2513134-2783444	27031	554826.28
12	chr5:21296551-21799961	50341	535631.64
13	chr17:14925297-15830387	90509	348412.37
14	chr15:20167819-21004399	83658	283531.61
15	chr9:44839447-44914007	7456	125647.06
16	chr1:761041-879661	11862	50620.99

skeletalMuscle_Input

0 genomic regions were predicted to have a common peak in the skeletalMuscle_Input group, and no peaks in other groups.

100 genomic regions were predicted to have no peaks in the skeletalMuscle_Input group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr2:110253651-111584871	133122	2341146.45
2	chr17:17953885-19725985	177210	1989590.78
3	chr6:170449768-171302248	85248	1801040.61
4	chr16:18455037-19207727	75269	1303052.76
5	chr22:21232383-22737323	150494	941646.60
6	chr22:18647614-20132434	148482	822875.09
7	chr17:57927887-58339157	41127	810607.26
8	chr8:61497963-63527633	202967	778127.33
9	chr9:1206317-3017807	181149	767762.50
10	chrY:20074905-22201745	212684	760754.30
11	chr2:95731469-96678809	94734	735526.39
12	chr13:52480586-53520076	103949	716943.25
13	chr9:94519083-95549593	103051	659371.01
14	chr19:8788570-9067480	27891	657377.49
15	chr4:52199200-53269600	107040	635209.17
16	chr11:67846600-68825060	97846	609545.66
17	chr16:74109477-74897627	78815	602845.51
18	chr10:28361419-29364159	100274	593989.25
19	chr3:194739530-195835370	109584	564262.36
20	chr19:36019356-37768436	174908	552555.27
21	chr17:36343386-37499146	115576	550448.06
22	chr2:97756681-97978781	22210	544819.47
23	chrX:47565907-49221677	165577	540294.27
24	chr22:41223052-41866522	64347	537791.36
25	chr19:32192319-33624279	143196	536931.33
26	chr11:17886107-18802897	91679	519315.28
27	chr15:72007829-73673339	166551	515712.75
28	chr2:151926273-152686113	75984	493803.92
29	chr5:175187040-176380390	119335	493796.07
30	chr15:101779449-102659899	88045	493247.85
31	chr10:50872026-51202226	33020	483803.69
32	chr19:7004413-7151363	14695	476841.42
33	chr2:73701281-74264601	56332	468125.95
34	chr16:-370947-639173	101012	462335.14
35	chr7:151330612-152368912	103830	458082.97
36	chr14:90451275-91057795	60652	447279.54
37	chr22:23886230-24591500	70527	434730.64
38	chr20:45172335-46648805	147647	425213.69
39	chr1:222359102-223103572	74447	418544.56
40	chr14:92944804-94507054	156225	413600.29
41	chr2:71207372-71991432	78406	401333.31
42	chr19:14664931-14974451	30952	394908.91
43	chr7:74925295-75189305	26401	390554.40
44	chr9:96887682-97217582	32990	383296.87
45	chr7:102371324-103140154	76883	382830.51
46	chrX:152903691-154504551	160086	374199.26
47	chr1:39750486-40279736	52925	367000.91
48	chr19:58343637-58662827	31919	362773.34
49	chr9:86528652-86645882	11723	360166.38
50	chr15:99197549-99760729	56318	358136.35
51	chr1:25386653-26198023	81137	356410.31
52	chr20:2244052-2676062	43201	354358.70
53	chr22:42727578-43284708	55713	351005.53
54	chr7:4227800-5328100	110030	350538.29
55	chr7:72191364-72575224	38386	347168.39
56	chr15:89122374-90256684	113431	346346.39
57	chr1:25556188-25797548	24136	339356.23
58	chr7:96754380-98936250	218187	336754.97
59	chr9:115697878-115929698	23182	334880.81
60	chr7:65000210-65415330	41512	331996.00
61	chr9:128283073-130075373	179230	330130.87
62	chr9:5943051-6990311	104726	324939.60
63	chr19:8260262-8496342	23608	324913.95
64	chr2:130720560-131136640	41608	323142.32
65	chr9:94544243-95090243	54600	319742.90
66	chr8:70721549-71386249	66470	318209.23
67	chr2:157898537-159388267	148973	317789.15
68	chr20:24574521-25374241	79972	316445.99
69	chr19:37378224-38303234	92501	316171.84
70	chr10:26244732-27890322	164559	313724.74
71	chrX:114403939-115738529	133459	308983.86
72	chr3:41164968-41388338	22337	307592.64
73	chr7:89105160-90630320	152516	307062.64
74	chr19:5525238-6345528	82029	302863.42
75	chr6:-92466-770934	86340	296251.63
76	chr7:74438330-74532330	9400	295658.57
77	chr13:113370099-114371989	100189	290994.13
78	chr11:4253598-4549198	29560	287361.46
79	chr6:79243025-80230035	98701	272173.57
80	chr9:97082861-97345421	26256	268670.92
81	chr18:13680647-14490117	80947	266602.79
82	chr19:9148859-9385319	23646	260567.98
83	chr7:66679082-66873032	19395	252787.30
84	chr11:105356559-106478399	112184	252219.52
85	chr8:41863149-42458189	59504	249799.61
86	chr11:74104325-74984755	88043	246305.27
87	chr3:185546263-185733873	18761	241666.19
88	chr19:52231189-52550369	31918	232156.05
89	chr17:36056097-36977107	92101	226592.82
90	chr3:120019989-120224719	20473	222062.50
91	chr7:32516836-33374746	85791	218525.75
92	chr7:71614648-72894538	127989	183120.67
93	chr7:29961610-31799860	183825	172233.51
94	chr19:1115916-1415996	30008	167189.89
95	chr1:162586656-162888596	30194	165051.05
96	chr7:64302886-64601286	29840	162802.74
97	chr17:21193069-21438219	24515	151420.01
98	chr7:99837371-100073791	23642	146024.75
99	chr11:93662280-96171950	250967	131293.46
100	chr2:132907337-133055997	14866	65503.88

thyroid

129 genomic regions were predicted to have a common peak in the thyroid group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr2:831396-2134056	130266	450201.93
2	chrY:23594225-25284515	169029	304857.38
3	chr2:113699180-114312180	61300	172822.35
4	chr8:134008707-134261887	25318	148826.73
5	chr12:97384157-98435367	105121	122162.08
6	chr2:169489767-170608707	111894	114390.37
7	chr2:121819113-122161863	34275	107086.85
8	chr3:192797791-193512841	71505	99704.14
9	chr10:20491056-21774876	128382	95164.64
10	chr7:62749126-62919736	17061	92679.77
11	chr3:12970064-13825684	85562	80844.35
12	chr16:57616698-57768248	15155	80318.50
13	chr18:46950207-47262517	31231	80046.73
14	chr5:167408458-168305798	89734	67042.03
15	chrX:3196952-3915592	71864	64700.44
16	chrX:117903221-118366201	46298	63605.71
17	chr12:8056260-9245470	118921	60297.66
18	chr2:236371968-238258468	188650	59613.28
19	chr15:53216407-54599657	138325	53901.38
20	chr16:68717230-68995230	27800	51790.27
21	chr1:205224858-205327468	10261	50414.17
22	chrX:148670372-149659302	98893	49703.56
23	chr4:153695397-154068477	37308	49337.91
24	chr10:6220098-6833438	61334	48430.55
25	chr19:2884812-3131722	24691	47883.92
26	chrX:44615666-45269626	65396	46899.82
27	chr4:23599227-24025787	42656	45712.27
28	chr10:6781508-7709098	92759	45104.05
29	chr7:36700934-37126634	42570	44612.11
30	chr12:101345924-101796474	45055	43905.03
31	chrX:114595496-115132046	53655	43887.10
32	chr12:52547811-52727271	17946	43480.74
33	chr15:52067710-52991220	92351	43193.93
34	chr1:247914344-248155634	24129	42042.28
35	chrX:19284770-19462740	17797	40884.47
36	chr11:3197197-3326217	12902	40772.39
37	chr1:60135383-60514613	37923	40275.67
38	chrX:30661499-31069989	40849	39884.10
39	chr7:101836004-102092504	25650	38738.55
40	chrX:153138079-153305029	16695	38472.15
41	chr17:67803608-68402228	59862	37760.36
42	chr4:79308036-79716876	40884	37371.08
43	chr14:81288859-81819179	53032	36561.95
44	chr6:131918796-132181066	26227	36386.12
45	chrX:43245673-43903003	65733	36350.97
46	chr9:127102957-127496607	39365	36203.24
47	chr16:21652960-21993210	34025	35872.03
48	chr20:13113376-13419796	30642	35692.37
49	chr3:46360366-46783776	42341	34980.13
50	chr12:16401519-16630929	22941	34857.25
51	chr17:28872417-29002177	12976	34796.67
52	chr15:55761693-56074603	31291	34449.71
53	chr15:53786008-54222448	43644	34204.91
54	chr6:154078790-154967740	88895	34100.56
55	chr6:46662201-47015801	35360	33995.35
56	chr7:106986327-107668487	68216	33433.12
57	chr15:100284813-100435673	15086	32313.22
58	chr11:117921812-118307472	38566	31967.70
59	chr4:48825734-48973434	14770	31908.71
60	chr10:75050275-75510015	45974	31631.59
61	chr9:85275795-85981485	70569	31170.53
62	chr15:45223018-45476318	25330	30866.67
63	chr9:139849262-139970462	12120	30433.43
64	chr3:157714447-158874317	115987	30256.49
65	chr10:97762709-98178199	41549	29867.80
66	chr2:232922459-233138979	21652	29183.56
67	chr3:44962052-45321882	35983	29153.07
68	chrX:70461454-70569114	10766	28918.15
69	chr4:84114862-84880812	76595	28706.55
70	chr8:120348749-121664099	131535	28447.74
71	chr11:109847846-111160626	131278	28039.25
72	chr18:52837676-54718016	188034	27941.93
73	chrX:11084017-11187637	10362	27729.45
74	chr6:41021706-41195556	17385	27531.01
75	chr5:42760729-42847509	8678	27426.13
76	chr14:100976084-101871694	89561	27396.29
77	chr13:39237809-39645149	40734	26961.88
78	chr2:166478859-166738629	25977	26623.79
79	chr2:242951813-243129853	17804	26601.37
80	chr10:88647334-88855544	20821	26521.68
81	chr20:39902144-40061324	15918	26001.56
82	chr19:51806298-51897708	9141	25588.45
83	chr3:119189428-119717698	52827	24987.09
84	chr7:6795734-6915404	11967	24676.62
85	chr4:24888060-25398940	51088	24479.77
86	chr1:107859880-108422500	56262	24360.71
87	chr16:66339277-66521237	18196	24308.08
88	chr11:48118931-48610321	49139	24104.81
89	chr6:136546997-136803097	25610	23968.30
90	chr4:57385099-57668339	28324	23904.20
91	chr7:85673542-87483692	181015	23679.58
92	chr2:162911590-163377710	46612	22688.89
93	chr8:133236264-134001964	76570	22629.26
94	chr12:57945972-58038842	9287	22380.56
95	chr6:148695709-148904739	20903	21679.42
96	chr22:22639177-22706487	6731	21039.35
97	chr1:154991490-155068150	7666	20861.18
98	chr11:86914410-87147340	23293	20480.61
99	chr4:71735440-73013470	127803	20165.77
100	chr3:50140791-50296581	15579	20046.94
101	chr17:72367163-72513743	14658	19913.32
102	chr14:75126086-75248366	12228	19713.50
103	chr5:122322376-122400056	7768	19607.02
104	chr21:46439939-47827819	138788	19242.04
105	chr6:89778682-89955652	17697	19105.57
106	chr4:84080477-84298287	21781	19096.26
107	chr14:90712948-92084258	137131	18964.23
108	chr1:209922274-210009754	8748	18767.76
109	chr15:34316511-34447411	13090	18750.16
110	chr10:61217543-61646213	42867	17979.95
111	chr3:176141952-177545802	140385	17207.58
112	chr16:78088144-78208234	12009	17177.55
113	chr1:154072919-154801269	72835	16770.51
114	chr14:73875310-74411230	53592	16656.56
115	chr7:77325774-77485044	15927	16366.93
116	chr3:63755594-63879534	12394	15958.72
117	chr4:89251523-90574463	132294	15557.02
118	chr3:185263427-185532027	26860	14590.02
119	chr4:129401689-130390729	98904	13468.00
120	chr8:124245676-125867446	162177	13409.74
121	chr4:146425860-147167250	74139	13340.60
122	chr7:129815013-130301483	48647	12002.65
123	chr13:40534662-41835872	130121	11948.24
124	chr15:42573869-43659849	108598	11773.27
125	chr14:64319300-64915490	59619	11217.14
126	chr4:123389497-124578897	118940	11057.24
127	chr2:216676392-217158442	48205	10435.30
128	chr7:127796319-128633719	83740	9797.24
129	chr1:39494786-39678266	18348	9764.78

5 genomic regions were predicted to have no peaks in the thyroid group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr19:39163378-40653988	149061	603324.40
2	chr7:149521655-150592595	107094	534568.99
3	chr6:31331547-32847637	151609	496094.16
4	chr10:42665444-42943444	27800	368661.08
5	chr14:95206570-96687660	148109	281704.15

thyroid_Input

7 genomic regions were predicted to have a common peak in the thyroid_Input group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chrX:72135325-72278055	14273	189662.26
2	chrX:89786573-90899493	111292	147474.24
3	chrX:151826285-152559755	73347	119070.09
4	chr5:177442761-177533121	9036	47059.47
5	chr1:206086261-206316021	22976	45668.78
6	chr2:179813694-180409674	59598	36673.54
7	chr4:187728265-188005085	27682	28981.21

23 genomic regions were predicted to have no peaks in the thyroid_Input group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr1:243344533-243422713	7818	953891.04
2	chr1:18817717-20109817	129210	949176.91
3	chr13:52785628-53681848	89622	737480.27
4	chr9:133864998-134848008	98301	728372.32
5	chr19:40523905-41964735	144083	675859.32
6	chr9:34451465-35649085	119762	582511.38
7	chr22:36376954-37043914	66696	571060.11
8	chr20:47515993-48231083	71509	547313.78
9	chr12:53083966-53789256	70529	502588.80
10	chr22:20557197-21706557	114936	480351.53
11	chr5:139718399-140389739	67134	445829.23
12	chr7:156851885-157515075	66319	422961.99
13	chr17:74155789-75298329	114254	414900.31
14	chr22:24687288-25234648	54736	355374.19
15	chr21:47922129-48220159	29803	319636.07
16	chr19:9485533-9568603	8307	268499.94
17	chr19:53524975-53623305	9833	222651.51
18	chr9:139814362-140166542	35218	219194.83
19	chr1:207891154-208077494	18634	175955.34
20	chr10:3765431-3877861	11243	149882.07
21	chr9:72017990-73429210	141122	137170.55
22	chr7:101557-308127	20657	95679.82
23	chr16:14191204-14935194	74399	92558.16