PeakSegFPOP + PeakSegJoint predictions

Output: predicted peaks

4141 genomic regions were found to have at least one sample with a peak (track hub, peaks_summary.tsv).
80809 peaks were detected overall, across 29 samples.
Peak presence/absence matrices: (regions x samples), (regions x groups),
Peak raw height matrix (regions x samples), mean coverage in peak, which is not comparable between samples, but is useful for plotting the segment mean on top of the raw coverage/count data,
Peak normalized height matrix (regions x samples), log10(mean coverage in peak/mean coverage in background on the same sample), which is comparable between samples,
Peak log-likelihood increase matrix (regions x samples) -- useful for ranking peaks (e.g. taking top 100 in each sample) -- wider and taller peaks are more likely, and have larger values in this matrix -- technically the values are computed as: nll_1 - nll_3, where nll_k is the negative log likelihood of the model with k segments (nll_1 is the model with one segment, no peak; nll_3 is the model with a peak, three segments, one change up and one change down).

Input: labeled genomic windows

4 labeled genomic windows (chunks) were defined in 1 label file(s): labels/original.txt

	chunk	img
1	chr10:18761902-22380580
2	chr10:116162626-119243952
3	chr11:127992023-128700047
4	chr12:15684593-16586367

Input: genomic segmentation problems

373 problems were defined in problems.bed

	problem	peak.regions	peak.samples	labeled.chunks	labeled.regions	labels
1	chr1:10000-177417			0	0	0
2	chr1:227417-267719			0	0	0
3	chr1:317719-471368			0	0	0
4	chr1:521368-2634220	2	58	0	0	0
5	chr1:2684220-3845268	1	29	0	0	0
6	chr1:3995268-13052998	3	67	0	0	0
7	chr1:13102998-13219912	1	0	0	0	0
8	chr1:13319912-13557162	1	0	0	0	0
9	chr1:13607162-16800000	5	119	0	0	0
10	chr1:17175658-29878082	16	427	0	0	0
11	chr1:30028082-91800000	117	2352	0	0	0
12	chr1:91860000-103863906	5	143	0	0	0
13	chr1:103913906-120697156	25	615	0	0	0
14	chr1:120747156-120936695			0	0	0
15	chr1:121153000-121349000			0	0	0
16	chr1:142781022-142967761			0	0	0
17	chr1:143117761-143292816			0	0	0
18	chr1:143342816-143544525			0	0	0
19	chr1:143644525-143771002			0	0	0
20	chr1:143871002-144095783			0	0	0
21	chr1:144145783-144224481			0	0	0
22	chr1:144274481-144401744			0	0	0
23	chr1:144451744-144622413			0	0	0
24	chr1:144672413-144710724			0	0	0
25	chr1:144810724-145833118	2	31	0	0	0
26	chr1:145883118-146164650	1	29	0	0	0
27	chr1:146214650-146253299			0	0	0
28	chr1:146303299-148026038	8	136	0	0	0
29	chr1:148176038-148361358			0	0	0
30	chr1:148511358-148684147			0	0	0
31	chr1:148734147-148954460			0	0	0
32	chr1:149004460-149459645	1	21	0	0	0
33	chr1:149509645-205922707	99	2088	0	0	0
34	chr1:206072707-206332221			0	0	0
35	chr1:206482221-223747846	20	433	0	0	0
36	chr1:223797846-235192211	21	559	0	0	0
37	chr1:235242211-248908210	15	373	0	0	0
38	chr1:249058210-249240621			0	0	0
39	chr2:10000-3529312	4	54	0	0	0
40	chr2:3579312-5018788	2	28	0	0	0
41	chr2:5118788-16279724	14	295	0	0	0
42	chr2:16329724-21153113	5	128	0	0	0
43	chr2:21178113-33000000	7	178	0	0	0
44	chr2:33200000-87000000	68	1500	0	0	0
45	chr2:87718206-89630436	2	57	0	0	0
46	chr2:95326171-109668000	18	475	0	0	0
47	chr2:110251337-149690582	56	1052	0	0	0
48	chr2:149790582-162100000	15	333	0	0	0
49	chr2:162200000-234003741	119	2447	0	0	0
50	chr2:234053741-239801978	10	185	0	0	0
51	chr2:239831978-240784132	1	29	0	0	0
52	chr2:240809132-243102476	2	32	0	0	0
53	chr2:243152476-243189373			0	0	0
54	chr3:60000-66170270	120	2417	0	0	0
55	chr3:66270270-90504854	16	271	0	0	0
56	chr3:93504854-194041961	178	3198	0	0	0
57	chr3:194047251-196620000	7	203	0	0	0
58	chr3:196630000-197962430			0	0	0
59	chr4:10000-1423146	1	29	0	0	0
60	chr4:1478646-8799203	18	406	0	0	0
61	chr4:8818203-9274642	2	20	0	0	0
62	chr4:9324642-31820917	21	454	0	0	0
63	chr4:31837417-32834638	1	1	0	0	0
64	chr4:32840638-40296396	5	125	0	0	0
65	chr4:40297096-49000000	6	155	0	0	0
66	chr4:52660117-59739333	7	201	0	0	0
67	chr4:59789333-68260000	3	7	0	0	0
68	chr4:68270000-75427379	8	179	0	0	0
69	chr4:75452279-190000000	187	2492	0	0	0
70	chr5:100000-17500000	47	422	0	0	0
71	chr5:17580657-46405641	43	610	0	0	0
72	chr5:49600000-91636128	89	1420	0	0	0
73	chr5:91686128-138787073	61	1342	0	0	0
74	chr5:138837073-155138727	21	539	0	0	0
75	chr5:155188727-180905260	36	884	0	0	0
76	chr6:60000-58087659	100	1832	0	0	0
77	chr6:58137659-58770000	1	24	0	0	0
78	chr6:61880166-62128589			0	0	0
79	chr6:62178589-95680543	24	571	0	0	0
80	chr6:95830543-157559467	92	1757	0	0	0
81	chr6:157609467-157641300			0	0	0
82	chr6:157691300-160515000	8	154	0	0	0
83	chr6:160530000-167942073	6	118	0	0	0
84	chr6:168042073-170279972	2	45	0	0	0
85	chr6:170329972-170700000	1	26	0	0	0
86	chr6:170720000-171055067			0	0	0
87	chr6_apd_hap1:0-207807			0	0	0
88	chr6_apd_hap1:252060-327074			0	0	0
89	chr6_apd_hap1:356458-448574			0	0	0
90	chr6_apd_hap1:536172-588761			0	0	0
91	chr6_apd_hap1:692953-944435	1	0	0	0	0
92	chr6_apd_hap1:963558-970040			0	0	0
93	chr6_apd_hap1:1029417-1173934	1	0	0	0	0
94	chr6_apd_hap1:1198528-1307951	1	0	0	0	0
95	chr6_apd_hap1:1317697-1341208			0	0	0
96	chr6_apd_hap1:1344139-1451581	1	1	0	0	0
97	chr6_apd_hap1:1556172-1582549			0	0	0
98	chr6_apd_hap1:1598989-1736596			0	0	0
99	chr6_apd_hap1:1786349-1833811			0	0	0
100	chr6_apd_hap1:1937682-2009922			0	0	0
101	chr6_apd_hap1:2164480-2169002			0	0	0
102	chr6_apd_hap1:2254169-2359974			0	0	0
103	chr6_apd_hap1:2761234-2821679			0	0	0
104	chr6_apd_hap1:2858431-2894657			0	0	0
105	chr6_apd_hap1:3037482-3122973			0	0	0
106	chr6_apd_hap1:3136480-3180323			0	0	0
107	chr6_apd_hap1:3355295-3370179			0	0	0
108	chr6_apd_hap1:3415446-3491066			0	0	0
109	chr6_apd_hap1:3594101-3638667			0	0	0
110	chr6_apd_hap1:3642320-3696623			0	0	0
111	chr6_apd_hap1:3736194-3762870			0	0	0
112	chr6_apd_hap1:3766192-3790366			0	0	0
113	chr6_apd_hap1:3970602-4220467	1	0	0	0	0
114	chr6_apd_hap1:4274176-4390029	1	0	0	0	0
115	chr6_apd_hap1:4597885-4622290			0	0	0
116	chr6_dbb_hap3:0-138055			0	0	0
117	chr6_dbb_hap3:245960-622457			0	0	0
118	chr6_dbb_hap3:640380-1337861	3	2	0	0	0
119	chr6_dbb_hap3:1344119-1836690	3	0	0	0	0
120	chr6_dbb_hap3:1837200-2117295	2	0	0	0	0
121	chr6_dbb_hap3:2119813-2606257	2	1	0	0	0
122	chr6_dbb_hap3:2723615-3407000	4	3	0	0	0
123	chr6_dbb_hap3:3481304-3736386	1	0	0	0	0
124	chr6_dbb_hap3:3772614-4206542	1	4	0	0	0
125	chr6_dbb_hap3:4226964-4354126			0	0	0
126	chr6_dbb_hap3:4376794-4610396	1	5	0	0	0
127	chr6_mann_hap4:0-145852			0	0	0
128	chr6_mann_hap4:184243-1388812	4	3	0	0	0
129	chr6_mann_hap4:1438812-2047420	2	13	0	0	0
130	chr6_mann_hap4:2056121-2252213	2	0	0	0	0
131	chr6_mann_hap4:2277026-2312291			0	0	0
132	chr6_mann_hap4:2324610-2517052	1	0	0	0	0
133	chr6_mann_hap4:2540962-2772006	1	0	0	0	0
134	chr6_mann_hap4:2810953-2921096	1	1	0	0	0
135	chr6_mann_hap4:2929556-3062107	1	1	0	0	0
136	chr6_mann_hap4:3151453-3174271			0	0	0
137	chr6_mann_hap4:3227203-3261361			0	0	0
138	chr6_mann_hap4:3374492-3412258			0	0	0
139	chr6_mann_hap4:3450867-3553455	1	0	0	0	0
140	chr6_mann_hap4:3557741-3895092	2	1	0	0	0
141	chr6_mann_hap4:3926341-4236950	1	0	0	0	0
142	chr6_mann_hap4:4245095-4441658	1	0	0	0	0
143	chr6_mann_hap4:4480941-4683263	1	0	0	0	0
144	chr6_mcf_hap5:0-135141			0	0	0
145	chr6_mcf_hap5:138043-179429			0	0	0
146	chr6_mcf_hap5:186757-229133			0	0	0
147	chr6_mcf_hap5:282732-383988			0	0	0
148	chr6_mcf_hap5:404415-491590			0	0	0
149	chr6_mcf_hap5:560421-676599			0	0	0
150	chr6_mcf_hap5:685588-994250	1	0	0	0	0
151	chr6_mcf_hap5:1009296-1177759			0	0	0
152	chr6_mcf_hap5:1292220-1562952	2	0	0	0	0
153	chr6_mcf_hap5:1726699-1815769			0	0	0
154	chr6_mcf_hap5:1838106-2091199	1	1	0	0	0
155	chr6_mcf_hap5:2189158-2241824			0	0	0
156	chr6_mcf_hap5:2251998-2300850			0	0	0
157	chr6_mcf_hap5:2305647-2712451	2	1	0	0	0
158	chr6_mcf_hap5:2811903-2947576	1	1	0	0	0
159	chr6_mcf_hap5:2958999-3154498	1	1	0	0	0
160	chr6_mcf_hap5:3188719-3329672			0	0	0
161	chr6_mcf_hap5:3355524-3602941	1	0	0	0	0
162	chr6_mcf_hap5:3659279-3899294	1	1	0	0	0
163	chr6_mcf_hap5:3929849-4149579	1	1	0	0	0
164	chr6_mcf_hap5:4149626-4284353			0	0	0
165	chr6_mcf_hap5:4302274-4422172	1	0	0	0	0
166	chr6_mcf_hap5:4594253-4833398	1	5	0	0	0
167	chr6_qbl_hap6:0-521900			0	0	0
168	chr6_qbl_hap6:681210-2680914	11	8	0	0	0
169	chr6_qbl_hap6:2732064-3023176	2	3	0	0	0
170	chr6_qbl_hap6:3049607-3316246	1	1	0	0	0
171	chr6_qbl_hap6:3369039-3993031	2	6	0	0	0
172	chr6_qbl_hap6:4020006-4611984	3	7	0	0	0
173	chr6_ssto_hap7:0-861800			0	0	0
174	chr6_ssto_hap7:941242-1727717	3	0	0	0	0
175	chr6_ssto_hap7:1744408-1836632			0	0	0
176	chr6_ssto_hap7:1838892-1983561			0	0	0
177	chr6_ssto_hap7:1997824-2052735			0	0	0
178	chr6_ssto_hap7:2087415-2101474			0	0	0
179	chr6_ssto_hap7:2113875-2138491			0	0	0
180	chr6_ssto_hap7:2303018-2411247			0	0	0
181	chr6_ssto_hap7:2461193-3040184	4	2	0	0	0
182	chr6_ssto_hap7:3054966-3093568			0	0	0
183	chr6_ssto_hap7:3154699-3191196			0	0	0
184	chr6_ssto_hap7:3214366-3368931	1	1	0	0	0
185	chr6_ssto_hap7:3445987-4370564	5	4	0	0	0
186	chr6_ssto_hap7:4420564-4580410			0	0	0
187	chr6_ssto_hap7:4610218-4639806			0	0	0
188	chr6_ssto_hap7:4661556-4723509			0	0	0
189	chr6_ssto_hap7:4774367-4783798			0	0	0
190	chr6_ssto_hap7:4836049-4928567			0	0	0
191	chr7:50000-232484			0	0	0
192	chr7:282484-50370631	79	1379	0	0	0
193	chr7:50410631-53200000	1	13	0	0	0
194	chr7:53250000-57000000	4	78	0	0	0
195	chr7:62500000-74715724	18	417	0	0	0
196	chr7:74765724-100556043	38	811	0	0	0
197	chr7:100606043-130154523	40	918	0	0	0
198	chr7:130254523-139379377	12	326	0	0	0
199	chr7:139404377-142048195	3	86	0	0	0
200	chr7:142098195-142276197			0	0	0
201	chr7:142326197-143347897	1	29	0	0	0
202	chr7:143397897-154270634	5	115	0	0	0
203	chr7:154370634-159128663	4	116	0	0	0
204	chr8:10000-7474649	8	113	0	0	0
205	chr8:7524649-12091854	7	188	0	0	0
206	chr8:12141854-43500000	38	827	0	0	0
207	chr8:48135599-86500000	45	813	0	0	0
208	chr8:87000000-142766515	66	1383	0	0	0
209	chr8:142816515-145332588	7	107	0	0	0
210	chr8:145432588-146304022			0	0	0
211	chr9:10000-39663686	39	887	0	0	0
212	chr9:39713686-39974796	1	0	0	0	0
213	chr9:40024796-40233029			0	0	0
214	chr9:40283029-40425834	1	0	0	0	0
215	chr9:40475834-40940341			0	0	0
216	chr9:40990341-41143214			0	0	0
217	chr9:41193214-41365793	2	0	0	0	0
218	chr9:41415793-42613955	1	11	0	0	0
219	chr9:42663955-43213698			0	0	0
220	chr9:43313698-43946569	2	0	0	0	0
221	chr9:43996569-44676646	3	12	0	0	0
222	chr9:44726646-44908293	2	0	0	0	0
223	chr9:44958293-45250203	1	0	0	0	0
224	chr9:45350203-45815521	1	10	0	0	0
225	chr9:45865521-46216430			0	0	0
226	chr9:46266430-46461039			0	0	0
227	chr9:46561039-47060133			0	0	0
228	chr9:47160133-47317679	1	0	0	0	0
229	chr9:65467679-65918360	1	0	0	0	0
230	chr9:65968360-66192215	1	0	0	0	0
231	chr9:66242215-66404656			0	0	0
232	chr9:66454656-66614195			0	0	0
233	chr9:67516296-67987998	1	4	0	0	0
234	chr9:68137998-68514181			0	0	0
235	chr9:68664181-68838946			0	0	0
236	chr9:68988946-69278385			0	0	0
237	chr9:69328385-69703000			0	0	0
238	chr9:69712000-70010542			0	0	0
239	chr9:70060542-70218729			0	0	0
240	chr9:70318729-70506535			0	0	0
241	chr9:70556535-70735468			0	0	0
242	chr9:70835468-92343416	24	506	0	0	0
243	chr9:92443416-92528796			0	0	0
244	chr9:92678796-133073060	83	1611	0	0	0
245	chr9:133223060-137041193	5	145	0	0	0
246	chr9:137091193-139166997	7	77	0	0	0
247	chr9:139216997-140200000	1	29	0	0	0
248	chr9:140250000-141000000	1	29	0	0	0
249	chr10:60000-17974675	19	518	0	0	0
250	chr10:18024675-38818835	30	669	1	7	147
251	chr10:42746000-46426964	5	135	0	0	0
252	chr10:47529169-47792476			0	0	0
253	chr10:47892476-48055707			0	0	0
254	chr10:48105707-49095536	3	35	0	0	0
255	chr10:49195536-51137410	3	82	0	0	0
256	chr10:51187410-51398845			0	0	0
257	chr10:51448845-125869472	130	2751	1	11	231
258	chr10:125919472-128616069	2	57	0	0	0
259	chr10:128766069-133381404	10	58	0	0	0
260	chr10:133431404-133677527			0	0	0
261	chr10:133727527-135477000	2	40	0	0	0
262	chr11:60000-580000			0	0	0
263	chr11:590000-900000			0	0	0
264	chr11:1212759-3650000	2	35	0	0	0
265	chr11:3700000-48500000	61	1378	0	0	0
266	chr11:55100000-69089801	13	352	0	0	0
267	chr11:69139801-69724695			0	0	0
268	chr11:69774695-87688378	15	389	0	0	0
269	chr11:87738378-96287584	10	219	0	0	0
270	chr11:96437584-134946516	43	1018	1	5	105
271	chr12:60000-95739			0	0	0
272	chr12:145739-7189876	16	409	0	0	0
273	chr12:7239876-34856694	42	799	1	7	147
274	chr12:38150000-66400000	37	873	0	0	0
275	chr12:66500000-109373470	59	1374	0	0	0
276	chr12:109423470-122530623	8	231	0	0	0
277	chr12:122580623-132706992	10	269	0	0	0
278	chr12:132806992-133841895			0	0	0
279	chr13:19020000-86760324	99	1871	0	0	0
280	chr13:86910324-112353994	20	472	0	0	0
281	chr13:112503994-114325993	2	58	0	0	0
282	chr13:114425993-114639948			0	0	0
283	chr13:114739948-115109878			0	0	0
284	chr14:19050000-107289540	163	3275	0	0	0
285	chr15:20000000-20894633	1	28	0	0	0
286	chr15:20935075-21398819	1	0	0	0	0
287	chr15:21885000-22212114			0	0	0
288	chr15:22262114-22596193			0	0	0
289	chr15:22646193-23514853			0	0	0
290	chr15:23564853-29159443	5	134	0	0	0
291	chr15:29209443-77800000	66	1479	0	0	0
292	chr15:77912000-82829645	6	171	0	0	0
293	chr15:82879645-84984473	1	27	0	0	0
294	chr15:85034473-102521392	22	506	0	0	0
295	chr16:60000-8636921	10	234	0	0	0
296	chr16:8686921-32000000	40	1011	0	0	0
297	chr16:46510000-88389383	60	1444	0	0	0
298	chr16:88439383-90294753	9	158	0	0	0
299	chr17:0-296626			0	0	0
300	chr17:396626-21566608	78	1105	0	0	0
301	chr17:21666608-22200000	2	0	0	0	0
302	chr17:25263006-34675848	10	267	0	0	0
303	chr17:34725848-41350000	6	171	0	0	0
304	chr17:41450000-62410760	29	742	0	0	0
305	chr17:62460760-77546461	15	389	0	0	0
306	chr17:77596461-79709049	1	29	0	0	0
307	chr17:79759049-81195210			0	0	0
308	chr17_ctg5_hap1:0-1256794	3	47	0	0	0
309	chr17_ctg5_hap1:1306794-1588968	1	16	0	0	0
310	chr17_ctg5_hap1:1638968-1680828			0	0	0
311	chr18:200000-15000000	19	439	0	0	0
312	chr18:18521000-52059136	38	783	0	0	0
313	chr18:52209136-72283353	15	327	0	0	0
314	chr18:72333353-75721820	4	81	0	0	0
315	chr18:75771820-78017248	1	29	0	0	0
316	chr19:60000-7346004	17	337	0	0	0
317	chr19:7396004-8687198	2	53	0	0	0
318	chr19:8737198-20523415	12	317	0	0	0
319	chr19:20573415-24631782	14	331	0	0	0
320	chr19:28000000-59118983	45	970	0	0	0
321	chr20:60000-25500000	30	753	0	0	0
322	chr20:29850000-34897085	2	57	0	0	0
323	chr20:34947085-61091437	34	939	0	0	0
324	chr20:61141437-61213369			0	0	0
325	chr20:61263369-62965520	1	29	0	0	0
326	chr21:9411193-9595548			0	0	0
327	chr21:9645548-9775437			0	0	0
328	chr21:10084920-10215976			0	0	0
329	chr21:10365976-10647896			0	0	0
330	chr21:14338129-42955559	36	652	0	0	0
331	chr21:43005559-44632664			0	0	0
332	chr21:44682664-48119895	3	73	0	0	0
333	chr22:16050000-16697850	2	0	0	0	0
334	chr22:16847850-18600000	2	51	0	0	0
335	chr22:18900000-20509431	1	29	0	0	0
336	chr22:20700000-50364777	93	1325	0	0	0
337	chr22:50414777-51244566	1	29	0	0	0
338	chrX:60000-94821			0	0	0
339	chrX:144821-231384			0	0	0
340	chrX:281384-1047557	1	5	0	0	0
341	chrX:1097557-1134113			0	0	0
342	chrX:1184113-1264234			0	0	0
343	chrX:1314234-2068238	3	23	0	0	0
344	chrX:2118238-7623882	8	112	0	0	0
345	chrX:7673882-10738674	3	52	0	0	0
346	chrX:10788674-37098256	26	462	0	0	0
347	chrX:37148256-49242997	10	234	0	0	0
348	chrX:49292997-49974173	1	14	0	0	0
349	chrX:50024173-52395914	3	25	0	0	0
350	chrX:52445914-58500000	6	167	0	0	0
351	chrX:62000000-76653692	17	344	0	0	0
352	chrX:76703692-113517668	37	372	0	0	0
353	chrX:113567668-115682290	3	9	0	0	0
354	chrX:115732290-120013235	2	45	0	0	0
355	chrX:120063235-143507324	28	412	0	0	0
356	chrX:143557324-148906424	6	60	0	0	0
357	chrX:148956424-149032062			0	0	0
358	chrX:149082062-152277099	3	50	0	0	0
359	chrX:152327099-155260560	7	127	0	0	0
360	chrY:10000-44821			0	0	0
361	chrY:94821-181384			0	0	0
362	chrY:231384-997557	1	5	0	0	0
363	chrY:1047557-1084113			0	0	0
364	chrY:1134113-1214234			0	0	0
365	chrY:1264234-2018238	3	23	0	0	0
366	chrY:2068238-8914955	8	21	0	0	0
367	chrY:8964955-9241322			0	0	0
368	chrY:13104553-13143954			0	0	0
369	chrY:14000000-20143885	1	7	0	0	0
370	chrY:20193885-22369679	1	9	0	0	0
371	chrY:22419679-23901428			0	0	0
372	chrY:23951428-28819361	4	9	0	0	0
373	chrY:58819361-58917656			0	0	0

Output: predicted group-specific peaks

These are great candidates for re-labeling.

bcell

10 genomic regions were predicted to have a common peak in the bcell group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr18:29831177-30763567	93239	239339.07
2	chr1:156914738-158505128	159039	239150.19
3	chr14:106175496-106457626	28213	207931.55
4	chr1:157315864-157687294	37143	143846.91
5	chr2:165475138-166516748	104161	121498.75
6	chrY:28802961-28830391	2743	118601.96
7	chr2:70437852-71439072	100122	114757.86
8	chrY:21609218-22147428	53821	113013.88
9	chr6:32491787-32746907	25512	103986.41
10	chr18:69853219-71087609	123439	92344.19

54 genomic regions were predicted to have no peaks in the bcell group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr10:29004846-30557266	155242	11627155.85
2	chr15:51177006-52420616	124361	10594902.08
3	chr22:17377575-18921135	154356	10257314.41
4	chr2:157909429-159381009	147158	8197717.90
5	chr12:106653199-107801369	114817	7914050.30
6	chr1:23065513-23713013	64750	7673096.49
7	chr7:75876529-77464229	158770	7197272.57
8	chr1:169188021-170740351	155233	7192749.98
9	chr9:33901578-34308248	40667	6868547.87
10	chr2:158316909-160539309	222240	6680073.15
11	chr2:202253823-202944853	69103	6653909.99
12	chr18:54511-1417171	136266	6499955.65
13	chr19:43117323-45034923	191760	6252632.17
14	chr17:62365034-63203434	83840	6047948.17
15	chr7:101620763-102423983	80322	5282361.79
16	chr1:156667745-157192455	52471	5261942.37
17	chr4:7387830-8219570	83174	4968448.68
18	chr10:14952708-15372348	41964	4914349.22
19	chr6:10254170-11236990	98282	4800957.48
20	chr6:27874611-28334511	45990	4425232.62
21	chr7:116259350-117372110	111276	4338969.33
22	chr2:216174087-217569637	139555	4315401.65
23	chr5:69023486-70037656	101417	4313630.78
24	chr10:81981745-82529315	54757	4163196.80
25	chr4:21616067-23191757	157569	3700115.36
26	chr16:55200954-55965874	76492	3527706.97
27	chr6:33670675-33825045	15437	3306000.15
28	chr8:94174647-95372437	119779	2938540.61
29	chr4:183535118-184825388	129027	2880018.04
30	chr18:11838109-12195699	35759	2798873.72
31	chr12:52145831-52598391	45256	2708745.46
32	chr10:23233330-23573370	34004	2672757.40
33	chr17:17901339-19037929	113659	2645048.96
34	chr11:58678050-59123560	44551	2588012.76
35	chr3:126084259-126608549	52429	2336479.29
36	chr2:114110536-114626346	51581	2311079.65
37	chr6:73724492-75241712	151722	2183718.00
38	chrX:7719295-8036345	31705	1976711.62
39	chr7:55774233-56178433	40420	1741355.15
40	chr10:48665932-49184992	51906	1688349.16
41	chr22:25567819-25950749	38293	1590418.50
42	chr12:34114333-34252453	13812	1497437.80
43	chr9:138534753-139340143	80539	1372706.33
44	chr21:35366782-36490162	112338	1319269.80
45	chr4:2766582-3980252	121367	1208511.24
46	chr9:137163873-137469553	30568	1054921.32
47	chr5:57724325-57779065	5474	992497.63
48	chr9:38366304-38427384	6108	817809.23
49	chr4:123607047-123715317	10827	776827.29
50	chr6_ssto_hap7:4046504-4443054	39655	510776.59
51	chr6_dbb_hap3:1279686-1881046	60136	471930.11
52	chr6_ssto_hap7:2649283-2777883	12860	430831.93
53	chr9:43364069-44361409	99734	239825.00
54	chr22:25605288-25645698	4041	149919.62

kidney

2 genomic regions were predicted to have a common peak in the kidney group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr2:121678354-122332674	65432	84348.13
2	chr21:15168683-15340113	17143	23866.84

161 genomic regions were predicted to have no peaks in the kidney group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr8:102511513-104078763	156725	18405282.27
2	chr6:79019582-80409512	138993	17672612.02
3	chr1:179374028-180666388	129236	16833801.54
4	chr6:144199193-145974923	177573	16222191.43
5	chr5:38678799-39251239	57244	15983507.72
6	chr5:97863122-98588792	72567	15882961.05
7	chr11:14190816-14826366	63555	15518147.90
8	chr3:151261940-152940310	167837	15373026.42
9	chr5:167512791-168405601	89281	15214753.20
10	chr1:224378546-224816696	43815	14694448.13
11	chr18:59427026-60430006	100298	13240544.07
12	chr12:98642086-99530926	88884	12700046.63
13	chr2:108797727-109396427	59870	12468663.20
14	chr9:5924917-7014577	108966	12351647.79
15	chr13:72950086-73682536	73245	12051758.99
16	chr3:194463289-195645519	118223	11920313.24
17	chr12:116095207-116759457	66425	11863058.07
18	chr2:128399800-129401380	100158	11771658.16
19	chr6:136223338-137672348	144901	11764149.38
20	chr5:136890103-137739793	84969	11641457.68
21	chr11:8768212-10191152	142294	11488110.58
22	chr5:101863902-103098972	123507	10928902.83
23	chr13:32637468-33944698	130723	10728963.38
24	chr9:111384758-112265908	88115	10711918.42
25	chr12:101916851-102999741	108289	10636815.34
26	chr2:48337436-49094486	75705	10546031.21
27	chr6:17214661-18077271	86261	10529143.39
28	chr1:184442708-184923728	48102	10485176.56
29	chr2:197818383-198933073	111469	10018092.23
30	chr5:148615345-149185825	57048	9933735.41
31	chr6:109507275-110682105	117483	9836849.98
32	chr11:16468637-17848657	138002	9715705.32
33	chr8:41554534-42073994	51946	9595806.09
34	chr5:169446855-169947905	50105	9579219.97
35	chr9:73983042-74679232	69619	9456890.58
36	chr1:58919292-59363182	44389	9324926.06
37	chr2:206518654-207264574	74592	8902890.59
38	chr12:95380801-95968851	58805	8735887.73
39	chr9:99444960-99614560	16960	8640781.00
40	chr8:107340437-108119977	77954	8508965.47
41	chr5:108306921-109099311	79239	8460389.67
42	chr21:35740659-36673929	93327	8296184.98
43	chr21:32832915-33279685	44677	7911320.50
44	chr11:10149121-10889461	74034	7895159.53
45	chr15:99441037-100925177	148414	7789890.37
46	chr3:57083150-57497410	41426	7727346.48
47	chr3:25478571-26099971	62140	7602931.38
48	chr5:121861630-122419830	55820	7589116.16
49	chr5:126690020-127056900	36688	7558143.17
50	chr2:134097769-136128429	203066	7549614.01
51	chr4:78360233-79305163	94493	7533770.86
52	chr5:153052461-153752711	70025	7525874.15
53	chr2:206765601-207252231	48663	7521723.54
54	chr15:84399225-86132315	173309	7345529.87
55	chr7:107353319-107753589	40027	7309064.19
56	chr1:150712143-151129633	41749	7294250.10
57	chr17:65574379-65889119	31474	7289680.89
58	chr1:85699576-86559846	86027	7253785.07
59	chr1:197658869-198811979	115311	7243103.71
60	chr15:55694503-57220353	152585	7210049.92
61	chr2:216002925-216391855	38893	7171138.61
62	chr2:138978335-139676035	69770	7146713.04
63	chr11:45729718-47257948	152823	7024834.13
64	chr20:19874363-20160723	28636	6967491.76
65	chr4:44513863-44888943	37508	6917540.50
66	chr3:36501257-37309007	80775	6813475.75
67	chr10:73026536-74793726	176719	6777046.18
68	chr5:156877906-157616556	73865	6767115.83
69	chr12:57389492-57962372	57288	6730509.83
70	chr13:31017639-31411499	39386	6720010.77
71	chr10:91115262-91892092	77683	6606858.93
72	chr2:73726683-74233773	50709	6595893.91
73	chr5:67135715-67977135	84142	6473129.99
74	chr2:196206149-196938429	73228	6467808.00
75	chr1:211691195-212629255	93806	6459133.68
76	chr1:63515117-64227177	71206	6451129.13
77	chr16:74516343-76298923	178258	6436192.83
78	chr8:109175358-109804208	62885	6279575.18
79	chr2:174498908-175095788	59688	6231237.49
80	chr3:107472343-108080223	60788	6202726.05
81	chr2:182587495-182968495	38100	6188009.83
82	chr7:89794387-90202567	40818	5992249.72
83	chr2:64448108-65127288	67918	5795066.45
84	chr3:185988599-187460379	147178	5793039.02
85	chr6:64223199-64593199	37000	5750881.15
86	chr16:56919815-57028645	10883	5747213.62
87	chr1:171483502-171892372	40887	5680230.50
88	chr19:19674745-20349405	67466	5663168.53
89	chr18:43922706-44955756	103305	5593046.52
90	chr3:8530929-9389339	85841	5591743.24
91	chr12:21680306-21913516	23321	5528502.29
92	chr12:69791006-70556576	76557	5501848.58
93	chr3:44522013-44851223	32921	5462158.51
94	chr3:31908241-33184871	127663	5438694.15
95	chr1:55063912-55328152	26424	5258022.40
96	chr3:172162281-172851351	68907	5224424.65
97	chr4:20540998-20904068	36307	5223734.04
98	chr9:104042854-104278134	23528	5167608.96
99	chr12:98785535-99077705	29217	5146976.61
100	chr4:151963348-152092908	12956	5142576.47
101	chr1:162853469-163715609	86214	5080589.11
102	chr19:32952885-33875725	92284	5062780.36
103	chr20:3897030-5815470	191844	4796139.24
104	chr17:18601589-18802589	20100	4739534.83
105	chr4:82187740-82539390	35165	4674724.06
106	chr8:59153546-59535826	38228	4658134.76
107	chr5:32490635-32707455	21682	4611105.69
108	chr11:82350338-82751898	40156	4609404.19
109	chr7:128266922-128534212	26729	4575569.27
110	chr10:119540232-120014572	47434	4549603.00
111	chr10:98762343-99243453	48111	4524767.95
112	chr14:63480586-64772756	129217	4439970.21
113	chr2:74879267-75327217	44795	4414777.65
114	chr10:89983762-91447152	146339	4340851.38
115	chr17:16389928-16689168	29924	4278269.26
116	chr11:63245459-63575629	33017	4151143.25
117	chr8:82517019-82944879	42786	4112874.76
118	chr15:74080799-74545649	46485	4077496.07
119	chr16:89953604-90463104	50950	4071052.78
120	chr2:176817473-177524113	70664	4068351.06
121	chr18:47193622-47440492	24687	4027700.18
122	chr3:38364438-38754958	39052	4027039.34
123	chr13:38867953-38995293	12734	3992226.15
124	chr9:74913254-75031714	11846	3913586.58
125	chr12:31516174-32178394	66222	3907743.04
126	chr3:155043826-156002166	95834	3849312.81
127	chr6:117850300-118183280	33298	3816658.71
128	chr6:34507037-36121117	161408	3771465.21
129	chr3:135997853-137236153	123830	3738743.12
130	chr1:174987270-175297280	31001	3722516.59
131	chr8:7865249-8548189	68294	3702312.44
132	chr1:160880013-161166953	28694	3462531.11
133	chr1:31155842-31265732	10989	3447951.69
134	chrX:108673145-109134645	46150	3436895.32
135	chr3:119886153-120213473	32732	3383678.19
136	chr4:2141556-2324666	18311	3348761.35
137	chr11:8908723-9039983	13126	3243948.50
138	chr16:11461513-11854883	39337	3183832.15
139	chr3:190884802-191307182	42238	3054893.01
140	chr6:95753072-96309002	55593	2970505.81
141	chr7:2203277-3438357	123508	2835202.39
142	chr14:23199285-23283425	8414	2791851.98
143	chr12:103881038-104491298	61026	2767408.44
144	chr17:16174967-16498907	32394	2431900.90
145	chrX:129069665-129660075	59041	2337978.24
146	chr14:24857630-24954600	9697	2264465.72
147	chr11:93734429-94071659	33723	2075162.84
148	chr22:21113952-21468482	35453	2031000.16
149	chr4:156747385-156960925	21354	1953790.96
150	chr3:127047322-127583162	53584	1797357.99
151	chr4:119153701-119258121	10442	1210693.44
152	chr17:18484570-18666270	18170	1059501.62
153	chrX:130174394-131615444	144105	851281.72
154	chr6_qbl_hap6:2979015-3494595	51558	623857.69
155	chrX:84364569-84670189	30562	520858.13
156	chr6_ssto_hap7:3161659-3360459	19880	516619.27
157	chr6_dbb_hap3:762347-1004197	24185	515824.33
158	chr6_dbb_hap3:3114976-3313176	19820	495916.58
159	chr6_dbb_hap3:2733231-2843661	11043	454309.00
160	chr6_mann_hap4:2793621-2897251	10363	426604.30
161	chr6_qbl_hap6:1321386-1595876	27449	414205.52

kidneyCancer

16 genomic regions were predicted to have a common peak in the kidneyCancer group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr3:189495107-189890867	39576	221436.35
2	chr6:142372868-143106318	73345	207563.62
3	chr12:6134897-6526327	39143	184851.72
4	chr22:32337719-32652139	31442	100579.93
5	chr3:88740659-90185769	144511	96989.01
6	chr7:20000335-20382695	38236	89972.63
7	chr5:1281616-1530496	24888	89751.48
8	chr8:72745542-72794902	4936	83946.36
9	chr17:19819536-20764626	94509	68194.10
10	chr22:23444027-23543187	9916	65285.41
11	chr4:65117194-66356724	123953	58838.96
12	chr4:79657089-81389879	173279	57083.45
13	chr3:143515808-144769958	125415	48644.46
14	chr5:90997617-91273217	27560	36640.91
15	chr5:16366313-16366783	47	32767.45
16	chr6_mcf_hap5:903816-1843716	93990	23238.15

2 genomic regions were predicted to have no peaks in the kidneyCancer group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr2:132262917-133825857	156294	2232925.12
2	chr6_mann_hap4:4014171-4071451	5728	567543.55

monocyte

95 genomic regions were predicted to have a common peak in the monocyte group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr7:28452997-29740277	128728	2852297.13
2	chr3:54531897-55583717	105182	2819960.71
3	chr1:169166270-169867390	70112	2325635.56
4	chr9:114204728-115505438	130071	2254616.48
5	chr3:131847176-132289956	44278	2229328.36
6	chr5:135212513-135557173	34466	2108794.12
7	chr4:185446566-185952616	50605	2083602.32
8	chr7:36164797-36765507	60071	1995675.25
9	chrX:68871499-70272809	140131	1905468.83
10	chr14:51206597-51563587	35699	1476771.25
11	chr5:75919440-76449650	53021	1406661.83
12	chr7:22739255-23270925	53167	1375473.95
13	chr12:9897724-10401594	50387	1293816.90
14	chr12:7488976-7782546	29357	1265727.25
15	chr10:109177478-109788808	61133	1225651.42
16	chr4:140316378-140929628	61325	1217569.00
17	chr12:15480985-15970905	48992	1211832.40
18	chr16:84575975-85211195	63522	1205276.36
19	chr5:101376667-101798057	42139	1140076.75
20	chr19:6673902-7162762	48886	1080035.27
21	chr4:125367704-125847464	47976	1055371.73
22	chr18:43510098-44727138	121704	1023333.07
23	chr3:48066418-48359808	29339	992713.56
24	chr4:108512662-109105282	59262	950257.46
25	chr3:122457258-123239048	78179	871715.67
26	chr12:66318201-66917851	59965	866908.64
27	chr2:169537700-169914530	37683	860837.89
28	chr4:178039409-178490529	45112	857923.66
29	chr2:8523289-9567059	104377	768765.60
30	chr4:147021654-147189724	16807	754183.17
31	chr1:192112428-192191668	7924	720999.94
32	chr1:36043311-36384391	34108	716328.89
33	chr19:54961331-55241131	27980	682932.17
34	chr3:121733497-121930367	19687	675778.40
35	chr1:223134716-223462576	32786	627546.07
36	chr7:47240501-47913431	67293	624303.08
37	chr9:75259686-75797716	53803	555902.83
38	chrX:1225986-1600856	37487	527067.63
39	chr3:129111893-129473353	36146	518841.55
40	chr6:36535670-36837570	30190	499616.55
41	chr3:38125469-38712649	58718	496333.08
42	chr5:137619426-137620826	140	471439.18
43	chr4:142195138-142287618	9248	437060.14
44	chr13:110970327-111407307	43698	428204.26
45	chr9:85386944-86428204	104126	426301.20
46	chr12:9321359-9585769	26441	401291.31
47	chr4:90135754-91265584	112983	392862.25
48	chr3:51850615-52461385	61077	388906.76
49	chr5:54929124-55447684	51856	388362.53
50	chr21:28101766-28524556	42279	382811.41
51	chr6:126504140-126856980	35284	378857.58
52	chr12:9444052-9721692	27764	362270.75
53	chr9:110533541-111039631	50609	329573.74
54	chr6:46549833-46817693	26786	301002.28
55	chr22:37906896-38022226	11533	292326.78
56	chr17:4189429-4531279	34185	275734.80
57	chr4:105070531-106810461	173993	275665.24
58	chr3:185302997-185482697	17970	257114.49
59	chr3:71875220-72371930	49671	249557.52
60	chr17:9127643-9213353	8571	247792.24
61	chr18:20757136-21079096	32196	245227.16
62	chr3:11090421-11395941	30552	243459.44
63	chr6:41103171-41375181	27201	216798.30
64	chr8:63814799-64059999	24520	202534.83
65	chr3:157134373-157184633	5026	186003.69
66	chr3:146758386-147455976	69759	179087.01
67	chr3:46206351-46563851	35750	169913.44
68	chrX:147849717-148262337	41262	168370.02
69	chr15:30234861-30609741	37488	163217.15
70	chr4:129937691-131072771	113508	138547.38
71	chr6:50586841-51725941	113910	127794.60
72	chr4:158686619-159191929	50531	116395.46
73	chr6_dbb_hap3:3671503-3707393	3589	108837.08
74	chr6_mcf_hap5:2689272-2715492	2622	105343.40
75	chr6_qbl_hap6:4156815-4397005	24019	103166.16
76	chr3:46406046-47279056	87301	100864.91
77	chr14:99222311-99877291	65498	96052.47
78	chr6_mann_hap4:3778837-3919337	14050	95384.11
79	chr10:131647773-132504333	85656	85959.41
80	chr7:50128505-50422775	29427	80340.85
81	chr6:101691499-102676709	98521	79979.39
82	chr6_ssto_hap7:3731411-3783701	5229	77085.14
83	chr2:129402241-129521731	11949	69795.86
84	chr6_mann_hap4:3732831-3773501	4067	65435.10
85	chrX:96960655-97361955	40130	63477.76
86	chr4:175517428-175548018	3059	53828.18
87	chr8:65259798-66111058	85126	48364.11
88	chrX:112775816-113684186	90837	44632.70
89	chr5:4169906-4199346	2944	43896.12
90	chr5:11240809-11382319	14151	38285.41
91	chr5:17286159-17624679	33852	36950.82
92	chr2:3865082-4527152	66207	36592.74
93	chr4:62708057-62784997	7694	36361.51
94	chr22:27562594-27945474	38288	34798.15
95	chr5:11004147-11059027	5488	17492.74

19 genomic regions were predicted to have no peaks in the monocyte group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr13:98828318-100196818	136850	11424529.24
2	chr11:119892583-120748523	85594	8986267.01
3	chr11:77486584-78937514	145093	6908708.63
4	chr15:90106333-90701953	59562	5589366.84
5	chr10:12957288-13374848	41756	5563509.15
6	chr6:82815105-84556905	174180	5358001.56
7	chr19:32656477-33059617	40314	5162778.72
8	chr2:221597553-223118953	152140	4480542.65
9	chr5:69391053-70270583	87953	4356898.93
10	chr8:27439284-27773184	33390	4259144.85
11	chr1:227770987-229179837	140885	4244503.00
12	chr6:132698431-133506991	80856	4071544.15
13	chr6:26236545-27485055	124851	3046329.77
14	chr12:125236083-125943943	70786	2755243.33
15	chr15:40623893-41505273	88138	2427820.11
16	chr4:156112210-156447180	33497	2022494.92
17	chr17:1900903-1976673	7577	1678879.82
18	chr11:44802490-45620040	81755	1519481.49
19	chrX:154635842-155008522	37268	883063.86

skeletalMuscleCtrl

20 genomic regions were predicted to have a common peak in the skeletalMuscleCtrl group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr4:153617893-154789573	117168	646075.37
2	chr3:46305180-46851320	54614	628893.39
3	chr3:127322455-128018405	69595	549300.68
4	chr6:133370979-134252409	88143	545815.67
5	chr3:138734124-139936504	120238	543486.35
6	chr6:131973555-132412575	43902	402845.86
7	chr4:141287486-142382586	109510	386795.14
8	chr3:154349498-155354238	100474	282413.88
9	chr14:107122112-107394442	27233	281645.77
10	chr1:37281007-37903057	62205	227247.46
11	chr5:35775119-36163779	38866	172099.80
12	chr13:80671226-81109086	43786	159215.54
13	chr5:60571028-61318328	74730	121025.72
14	chr6:151932822-152130332	19751	113670.09
15	chr3:97232889-97546799	31391	83350.18
16	chr4:145096318-146151808	105549	80043.33
17	chr5:44147913-44915753	76784	75243.66
18	chr2:184570966-185205516	63455	60941.86
19	chr4:180703602-181446102	74250	31755.37
20	chrX:146833773-147372643	53887	23423.61

6 genomic regions were predicted to have no peaks in the skeletalMuscleCtrl group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr11:120597184-122248404	165122	26580121.97
2	chr9:116876837-117364017	48718	7919939.93
3	chr2:219508414-219716884	20847	6087299.51
4	chr11:18872954-19468534	59558	5054239.55
5	chr10:115207802-115728072	52027	4403672.14
6	chr7:4626786-4999276	37249	3550752.94

skeletalMuscleMD

5 genomic regions were predicted to have a common peak in the skeletalMuscleMD group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr5:87583070-87855400	27233	574741.30
2	chr6:140939688-142688528	174884	162707.49
3	chr5:7380675-7424435	4376	118734.07
4	chr22:45596469-46274699	67823	40203.26
5	chr8:6224752-6243732	1898	37858.21

7 genomic regions were predicted to have no peaks in the skeletalMuscleMD group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr2:19840836-21987136	214630	6897141.86
2	chr1:116002744-117165924	116318	5548926.89
3	chr9:101242243-102639643	139740	5397482.97
4	chr14:103614343-105299223	168488	4461738.86
5	chr18:74173132-75390212	121708	3684877.08
6	chrX:62894797-64194347	129955	2784630.87
7	chr14:105231539-105767569	53603	1790611.60

tcell

198 genomic regions were predicted to have a common peak in the tcell group, and no peaks in other groups.

	peak	peakBases	group.loss.diff
1	chr6:151643780-153414390	177061	12606805.43
2	chr6:89574386-91281396	170701	9905283.51
3	chr12:14186766-15046416	85965	8132481.20
4	chr8:67437633-68922093	148446	7482208.93
5	chr3:170089529-171616419	152689	5699339.90
6	chr12:330465-1646795	131633	5664213.55
7	chr2:86366399-87041639	67524	5612938.95
8	chr14:91752720-92804050	105133	5463147.87
9	chr11:47038252-47609752	57150	5150108.52
10	chr2:135252153-136495073	124292	5068417.22
11	chr9:94443655-95612355	116870	4969921.06
12	chr2:200727241-202839841	211260	4869917.24
13	chr14:21451022-22268082	81706	4809726.67
14	chr5:109945894-111575934	163004	4778868.01
15	chr14:90672032-92118782	144675	4523090.07
16	chr3:15135276-16411146	127587	4397667.48
17	chr17:48757030-49378610	62158	4334608.34
18	chr2:96767728-97136358	36863	4314443.57
19	chr3:111084634-111526834	44220	4269542.01
20	chr8:124965755-126073265	110751	4196668.00
21	chr3:15783787-16926307	114252	4084132.17
22	chr3:63776192-64197442	42125	4082713.74
23	chr10:89223103-89862853	63975	4072523.72
24	chr16:15480598-16861348	138075	4062989.49
25	chr18:33978314-34825344	84703	4035343.21
26	chr13:95967834-96840324	87249	3922708.12
27	chr18:18805634-19444214	63858	3906480.04
28	chr3:45551476-45980956	42948	3837321.61
29	chr5:93575210-94440180	86497	3834836.91
30	chr2:190523732-191713862	119013	3634717.61
31	chr5:142087104-143348214	126111	3632211.12
32	chr10:98888890-99553950	66506	3565526.89
33	chr22:24019803-25462293	144249	3555849.95
34	chr4:38987392-39652582	66519	3498009.17
35	chr15:57239696-57869826	63013	3460277.07
36	chr10:113924682-114434882	51020	3446670.13
37	chr4:119760599-120596249	83565	3430109.12
38	chr2:189996993-191354323	135733	3325348.32
39	chr4:47845310-48338960	49365	3282660.30
40	chr2:170289222-170669402	38018	3277428.90
41	chr3:48628933-49588233	95930	3242604.91
42	chr12:39652087-40299977	64789	3225167.98
43	chr10:61251901-61908301	65640	3196181.16
44	chr6:107912588-108527988	61540	3138646.01
45	chr14:31065803-31720293	65449	3138188.11
46	chr12:69043340-69398550	35521	3130422.30
47	chr5:91810541-94783191	297265	3059803.23
48	chr6:142966950-143201930	23498	3019640.86
49	chr1:58656201-59293501	63730	3005417.03
50	chr13:23761584-24098824	33724	2988261.06
51	chr2:173182459-173718379	53592	2934239.92
52	chr2:191341129-192563019	122189	2885898.15
53	chr3:167155799-167677959	52216	2882203.31
54	chr5:31758817-32510627	75181	2836785.34
55	chr3:155381944-155891364	50942	2792499.84
56	chr18:13582102-13914092	33199	2740254.02
57	chr4:99689683-100268003	57832	2662489.91
58	chr5:77147401-78308771	116137	2660968.77
59	chr14:77664936-78159306	49437	2641478.85
60	chr3:108379226-108756286	37706	2622654.86
61	chr6:109558458-109817378	25892	2602468.23
62	chr3:137766455-138756875	99042	2524131.29
63	chr9:4478178-4933768	45559	2501037.60
64	chr5:133545654-133909354	36370	2465332.89
65	chr5:32001224-32501884	50066	2454346.86
66	chr10:88666359-88975599	30924	2444382.88
67	chr3:158394068-158678698	28463	2385178.37
68	chr4:185819844-186369384	54954	2374463.11
69	chr6:13124520-13492670	36815	2373167.19
70	chr16:21493763-23110783	161702	2363248.76
71	chr10:87731982-89478642	174666	2352994.77
72	chr4:71291410-72039580	74817	2351461.78
73	chr8:100796985-100992305	19532	2350597.54
74	chr21:26856144-27079054	22291	2316667.73
75	chr15:99181490-100543450	136196	2314425.89
76	chr12:55184628-55534198	34957	2299716.24
77	chr9:19821575-20977215	115564	2238625.32
78	chr1:66738228-66922028	18380	2233880.81
79	chr5:107383583-107985773	60219	2194488.33
80	chr6:107493332-108670552	117722	2189463.34
81	chr17:10388001-10807431	41943	2171373.65
82	chr8:126638403-127227583	58918	2162114.18
83	chr13:77445011-77719731	27472	2158263.57
84	chr10:24757884-25010694	25281	2145948.25
85	chr1:86649926-87018756	36883	2131666.80
86	chr2:174151265-175897825	174656	2086542.68
87	chr18:12442412-13201082	75867	2057714.20
88	chr3:52923046-53359476	43643	2023567.03
89	chr2:101533320-101725060	19174	1990524.08
90	chr12:69588866-69958466	36960	1988615.42
91	chr12:8937339-9232589	29525	1969319.20
92	chr3:51889711-52653281	76357	1968864.34
93	chr4:37674760-38021930	34717	1957240.15
94	chr12:11613410-13612860	199945	1888907.51
95	chr10:88977198-89200948	22375	1878872.32
96	chr2:67827342-69000432	117309	1873856.72
97	chr3:176154807-177532187	137738	1863787.49
98	chr3:129374293-129800313	42602	1820873.62
99	chr1:214168021-214812631	64461	1807374.85
100	chr10:50881778-51191708	30993	1771976.11
101	chr11:110144317-110504507	36019	1715701.55
102	chr5:49444506-49953096	50859	1699983.48
103	chr8:128454787-129657027	120224	1685083.15
104	chr6:99828033-100164643	33661	1672392.66
105	chr9:98735761-99810341	107458	1629900.72
106	chr7:24121039-25249279	112824	1597128.22
107	chr2:162619793-163137893	51810	1584456.84
108	chr7:96101439-96531679	43024	1572195.46
109	chr18:11769037-12019167	25013	1568986.30
110	chr11:32706673-33244443	53777	1553961.25
111	chr14:36110876-36531686	42081	1542775.72
112	chr14:61737936-61804076	6614	1542637.60
113	chr1:183926791-184139821	21303	1541551.43
114	chr9:108004805-109014715	100991	1491106.38
115	chr8:126425002-128953702	252870	1487302.05
116	chr2:204261901-204951751	68985	1485301.09
117	chr15:50415253-50754793	33954	1436160.03
118	chr1:226071026-226838196	76717	1416743.29
119	chr7:102090671-102491251	40058	1413465.39
120	chr8:6459309-6748199	28889	1391866.82
121	chr2:118782610-118941180	15857	1386947.42
122	chr10:90819082-91161702	34262	1380995.15
123	chr6:24295061-24743661	44860	1376051.25
124	chr19:20692636-20966446	27381	1374166.03
125	chr14:98212852-98628242	41539	1362921.65
126	chr3:119344290-119435470	9118	1347415.57
127	chr5:139353584-139950014	59643	1340398.62
128	chr1:200245123-201317093	107197	1297156.48
129	chr2:213954712-214390852	43614	1291656.83
130	chr1:160319841-160618511	29867	1288844.80
131	chr8:124359844-124701684	34184	1288044.93
132	chr8:131261309-131454439	19313	1279628.02
133	chr9:99385093-100092353	70726	1242971.62
134	chr13:74115855-75700575	158472	1189056.47
135	chr1:35420823-36121933	70111	1176631.37
136	chr9:114165607-114440697	27509	1143413.89
137	chr17:16672225-17288005	61578	1070007.73
138	chrX:64873465-65037195	16373	1039416.69
139	chr5:99621341-100181161	55982	1025333.36
140	chr1:51509501-51941351	43185	1014201.02
141	chr12:11851040-12770450	91941	1012800.86
142	chr1:147044575-147215425	17085	982549.57
143	chr8:135631438-136015608	38417	933876.78
144	chr6:145457655-146538505	108085	917836.11
145	chr22:27134336-27408316	27398	906522.87
146	chr3:18093813-18971863	87805	894588.92
147	chr3:56479784-57332694	85291	841184.71
148	chr9:114229756-114618006	38825	816681.23
149	chrX:135754006-136131046	37704	795915.83
150	chr15:29198386-29570436	37205	793577.01
151	chr5:74209038-74457548	24851	776866.97
152	chr4:89964587-90401427	43684	776331.28
153	chr6:45723746-46473646	74990	737199.24
154	chr7:104510889-104766019	25513	708951.78
155	chr2:149861042-149875742	1470	708029.66
156	chr3:143612337-143806647	19431	703182.12
157	chr8:81232578-81608548	37597	700100.73
158	chr8:75181869-75364989	18312	679581.30
159	chr2:237429264-237471334	4207	676636.81
160	chr4:151732478-152100218	36774	654362.88
161	chr6:160758398-161062138	30374	640722.09
162	chrX:123298607-123712787	41418	634568.50
163	chr5:176672272-177445492	77322	624705.71
164	chr17:18806475-19066535	26006	576524.56
165	chr8:95198486-95599196	40071	548327.10
166	chr15:92058327-92821287	76296	486815.20
167	chr13:48976558-49552558	57600	482265.87
168	chr4:141252880-141349670	9679	448146.88
169	chr5:32320864-32795024	47416	420069.01
170	chr6:10899681-11335951	43627	410744.71
171	chr18:42987421-43619381	63196	398607.85
172	chr14:94160407-95232147	107174	390565.53
173	chr15:21175493-21229663	5417	366981.05
174	chr4:108814278-109436358	62208	312604.59
175	chrX:50835968-51383928	54796	312053.61
176	chr5:55194475-55637665	44319	304281.79
177	chr21:14657639-15202729	54509	301517.69
178	chr22:15872408-16375458	50305	240082.51
179	chr14:101799481-102474491	67501	232457.70
180	chr17:21522601-21574501	5190	195714.81
181	chr4:90485533-91199563	71403	163711.59
182	chr22:49923838-49982518	5868	161360.86
183	chr1:48211583-49020353	80877	132576.56
184	chr22:16014873-16338033	32316	101127.82
185	chr9:39204474-40368444	116397	82880.83
186	chr13:22485701-22996971	51127	74590.72
187	chr22:22933120-23211120	27800	74328.84
188	chr6_mann_hap4:2102506-2178216	7571	73502.87
189	chrY:26321680-26562930	24125	65256.81
190	chr5:10386939-10551709	16477	63964.39
191	chr9:65892147-66143267	25112	60274.77
192	chr5:2176198-2288548	11235	59498.58
193	chrY:27383599-27653199	26960	58847.89
194	chr5:20672449-20849239	17679	47933.44
195	chr17:2995551-3499491	50394	42457.59
196	chr22:46859823-46924803	6498	34855.99
197	chr5:1813759-1873019	5926	32254.97
198	chr9:41271796-41399476	12768	28082.17

21 genomic regions were predicted to have no peaks in the tcell group, with a peak in all other groups.

	peak	peakBases	group.loss.diff
1	chr12:39992209-41397929	140572	20210650.09
2	chr5:87255155-88929425	167427	9728004.22
3	chr7:46568137-48225397	165726	6810541.72
4	chr2:16215316-17358576	114326	6295946.03
5	chr9:93133308-94100298	96699	5935999.56
6	chr11:7031462-8229472	119801	5111443.34
7	chr16:81400521-82483991	108347	4375917.63
8	chr18:73461349-74803279	134193	4165529.52
9	chr3:167548408-167941148	39274	3644784.31
10	chr9:83678638-84812148	113351	2822266.85
11	chr9:115829125-117631345	180222	2751457.57
12	chr22:44267495-44811815	54432	2703333.42
13	chr10:125358963-126253413	89445	2587102.49
14	chr3:50245995-51050385	80439	2329251.84
15	chr8:93399009-94449199	105019	1946059.00
16	chr14:104693833-105723923	103009	1785433.40
17	chrY:1183915-1780245	59633	1217375.39
18	chrX:1233843-1830383	59654	1209699.53
19	chrX:2722473-2944953	22248	1207428.72
20	chrX:16359532-17839672	148014	1164643.00
21	chr4:9196670-9236850	4018	443974.53