Interactive animations

Documentation for package ‘animint’ version 2016.11.02

Help Pages

animint-package	Interactive animations
animint	Compile and render an animint in a local directory
animint2dir	Compile and render an animint in a local directory
animint2gist	Convert a list of ggplots to an interactive animation and post files as a gist
animintOutput	Shiny ui output function
breakpoints	The breakpointError of simulated signals
change	Graphical model structure change
ChromHMMiterations	ChromHMM iterations
climate	Climate data in central America from 1995 to 2000
compare	Testing rank and compare SVM on simulated patterns
FunctionalPruning	Functional Pruning Algorithm
generation.loci	Evolution simulation
geom_tallrect	ggplot2 geom with xmin and xmax aesthetics that covers the entire y range, useful for clickSelects background elements.
geom_widerect	ggplot2 geom with ymin and ymax aesthetics that covers the entire x range, useful for clickSelects background elements.
getCommonChunk	Save the common columns for each tsv to one chunk
getLegend	Function to get legend information for each scale
getLegendList	Function to get legend information from ggplot
gg2animint	animint2dir
intreg	Interval regression
is.rgb	Check if character is an RGB hexadecimal color value
knit_print.animint	Insert an interactive animation into an R markdown document using a customized print method.
makeDocs	Make documentation web site.
make_bar	Convenience function for an interactive bar that might otherwise be created using stat_summary(geom="bar").
make_tallrect	Make a clickSelects geom_tallrect that completely tiles the x range. This makes it easy to construct tallrects for the common case of selecting a particular x value.
make_tallrect_or_widerect	Make a clickSelects geom_widerect or geom_tallrect that completely tiles the x or y range. This function is used internally by make_tallrect or make_widerect, which are more user-friendly.
make_text	Convenvience function for a showSelected plot label.
make_widerect	Make a clickSelects geom_widerect that completely tiles the y range. This makes it easy to construct widerects for the common case of selecting a particular y value.
malaria	Malaria parasite genome variants
merge_recurse	Merge a list of data frames.
mixtureKNN	K-Nearest-Neighbors model of the mixture example data
parsePlot	Convert a ggplot to a list.
PeakConsistency	Consistency of segmentation models in simulated Poisson peaks
pirates	Worldwide pirate attacks from 1978 to 2013
prior	Class prior change
prostateLasso	Lasso model of the prostate cancer data set
renderAnimint	Create an animint output element
run_servr	Spawn a child R session that runs a 'blocking' command
saveChunks	Split data set into chunks and save them to separate files.
saveLayer	Save a layer to disk, save and return meta-data.
scale_size_animint	Scale point sizes using circle area, but specifying the radius in pixels.
selector.aes	Parse selectors from aes names.
split.x	Split data.frame into recursive list of data.frame.
TestROC	Test ROC curves
tests_exit	Kill child process(es) that may have been initiated in animint testing
tests_init	Initiate external processes necessary for running tests.
tests_run	Run animint tests
theme_animint	theme for passing animint specific params
toRGB	Convert R colors to RGB hexadecimal color values
transform_shape	Function to transform R shapes into d3 shapes...
UStornadoes	Tornadoes in the United States from 1950 to 2012
VariantModels	Error rates of supervised learning methods for variant calling
varied.chunk	Extract subset for each data.frame in a list of data.frame
vervet	Vervet monkey intestinal microbiome
WorldBank	Demographics by country from 1960 to 2012
worldPop	World population by subcontinent