Interface to www.geonames.org web service
Geophysics, Continuum Mechanics, Mogi Model
geoRglm - a package for generalised linear spatial models
Robust Geostatistical Analysis of Spatial Data
Helper package to facilitate the generation of distance matrices
used in the package spacom
Spatial geostatistics; some geostatistical and radial basis
functions, prediction and cross validation; design of optimal
spatial sampling networks based on geostatistical modelling
Geostatistics using SpatialPoints and rasters
Interactive exploratory spatial data analysis
Parse command-line arguments and variable interpolation
GetR: Calculate Guttman error trees in R
Getting to the Bottom, A Package for Learning Optimization
Methods
GEV conditional density estimation network
ARMA-GARCH/APARCH models with GEV and stable distributions
A visual, intuitive, easy to use software giving access to a new
type of information buried into your microarray data
Tools for working with Hansen et al. 2013 Global Forest Change
dataset
Tools for extracting dendrogram and tree diagram plot data for
use with ggplot2
GGEBiplotGUI: Interactive GGE Biplots in R
Group Lasso Penalized Learning Using A Unified BMD Algorithm
A package for spatial visualization with Google Maps and
OpenStreetMap
Graphical tools for analyzing Markov Chain Monte Carlo
simulations from Bayesian inference
Variations of Parallel Coordinate Plots for Categorical Data
An implementation of the Grammar of Graphics
Creating and Plotting Data Objects for Understanding Random
Forests
Explore complex data by embedding subplots within plots
An extension to ggplot2, for the creation of ternary diagrams
Extra themes, scales and geoms for ggplot
A package on the generalized hyperbolic distribution and its
special cases
Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
Naive Gibbs Sampling with Metropolis Steps
Gillespie's Stochastic Simulation Algorithm (SSA)
Generalized Iterative Proportional Fitting for Relational Models
The giRaph package for graph representation in R
an R package for quantification of pinned microbial culture
Constructing panels of population pyramid plots based on lattice
Generalized Linear Autoregressive Moving Average Models
Graphical lasso- estimation of Gaussian graphical models
High dimensional Mixture Graph Models selection
Calculate textures from grey-level co-occurrence matrices
(GLCMs) in R
Estimation and use of the generalised (Tukey) lambda
distribution
Fitting Single and Mixture of Generalised Lambda Distributions
(RS and FMKL) using Various Methods
An Asymmetry-Steepness Parameterization of the Generalized
Lambda Distribution
Learning interactions via hierarchical group-lasso
regularization
Fitting Generalized Linear Models Subject to Constraints
Fit GLM with LEP-based penalized maximum likelihood
Generalised Linear Mixed Models and Spatial Models with WinBUGS,
BRugs, or OpenBUGS
Gauss-Seidel Generalized Linear Mixed Model solver
Variable selection for generalized linear mixed models by
L1-penalized estimation
Generalized linear models with clustering
Lasso and elastic-net regularized generalized linear models
Fit a penalized constrained continuation ratio model for
predicting an ordinal response
L1 Regularization Path for Generalized Linear Models and Cox
Proportional Hazards Model
Fit a penalized continuation ratio model for predicting an
ordinal response
Model selection and multimodel inference made easy
Testing the additional predictive value of high-dimensional data
Global Gene-Set Analysis for Association Studies
Objective functions for benchmarking the performance of global
optimization algorithms
Fitting and Testing Generalized Logistic Distributions
Generalized Least Squares with Measurement Error
Fast estimation of Gaussian Mixture Copula Models
Graph Based Multiple Comparison Procedures
Generalized Minimum Distance of distributions
Collection of functions for plotting relations, generating
tables, and more
Generalized Method of Moments and Generalized Empirical
Likelihood
Interface between GMT Map-Making Software and R
Computation of generalized Nash equilibria
Generalized Non-negative Matrix Factorization Based on Renyi
Divergence
Read data from files readable by gnumeric
Weighted and lexicographical goal programming and optimization
Model-diagnostics based on cumulative residuals
GoFKernel: Testing Goodness-of-fit with the Kernel Density
Estimator
Tests of fit for some probability distributions
Classical Goodness-of-Fit Tests for Univariate Distributions
Generalized Orthogonal GARCH (GO-GARCH) models
An R library to build Google's Public Data Explorer DSPL
Metadata files
functions to get public survey data in Japan
Batch Effect Detection via Guided Principal Components Analysis
GPCSIV, Generalized Principal Component of Symbolic Interval
variables
Bootstrap goodness-of-fit test for the generalized Pareto
distribution
Apply Gaussian Process in Functional data analysis
Generalized partial linear models (GPLM)
Generalized Partially Linear Tree-based Regression Model
Analysing and plotting genotype-phenotype maps
A Minimalistic package to apply Gaussian Process in R
gpseq: Using the generalized Poisson distribution to model
sequence read counts from high throughput sequencing
experiments
Maximum Likelihood Estimation of Multiple Membership Mixed
Models Used in Value-Added Modeling
Species distribution modelling using latent Gaussian random
fields
Graphical Representation and Modeling of Metagenomic Reads
Graphical Analysis of Variance Using ggplot2
Efficient selection of undirected graphical models for
high-dimensional datasets
A multi-platform GUI for drawing customizable graphs in R
GraphPCA, Graphical tools of histogram PCA
Inference in Graphical Gaussian Models with Edge and Vertex
Symmetries
Uses Grieg-Smith method on 2 dimentional spatial data
Generalized Regression on Orthogonal Components
The package was developed to fit fit many growth curves obtained
under different conditions
Regression Analysis of Grouped and Coarse Data
A GUI-based program to compute probabilities regarding group
sequential designs
Bayesian semi and nonparametric growth curve models that
additionally include multiple membership random effects
Bayesian non-parametric dependent models for time-indexed
functional data
Bayesian reconstruction of growth velocity
Fitting user specified models with Group Lasso penalty
Concave 1-norm and 2-norm group penalty in linear and logistic
regression
Regularization paths for regression models with grouped
covariates
Tools for the analysis of Gutenberg-Richter distributions of
earthquake magnitudes
Gene Set Analysis using the Gamma Method
Two functions for Generalized SARIMA time series simulation
Robust Estimation of Multivariate Location and Scatter in the
Presence of Missing Data
Group Sequential Design in Equivalence Studies
Copula Density and 2-D Hazard Estimation using Smoothing Splines
spatial and spatio-temporal geostatistical modelling, prediction
and simulation
Analyses and functions related to the spatial analysis of
genetic marker data
Utilities for strings and function arguments
Calculate efficiencies of group testing algorithms with
correlated responses
Maps, data and methods related to Guerry (1833) "Moral
Statistics of France"
Implementation of sampling formulas for the unified neutral
model of biodiversity and biogeography, with or without guild
structure
GUTS: Fast Calculation of the Likelihood of a Stochastic
Survival Model
Regularized Categorical Effects/Categorical Effect
Modifiers/Continuous/Smooth effects in GLMs
Global Validation of Linear Models Assumptions
Genome-wide association/interaction analysis and rare variant
analysis with family data
Exact Hardy-Weinburg testing for Genome Wide Association Studies
Controlling the genome-wide type I error rate in association
mapping experiments
Calculation of probabilities for inadequate and excessive
gestational weight gain
gWidgets API for building toolkit-independent, interactive GUIs
Rewrite of gWidgets API for simplified GUI construction
Implementation of gWidgets2 for RGtk2 package
Toolkit implementation of gWidgets2 for tcltk package
Toolkit implementation of gWidgets for RGtk2
Toolkit implementation of gWidgets for tcltk package
Fits geographically weighted regression models with diagnostic
tools
Genome-wide significance for whole genome sequencing studies
Maximum Likelihood Estimation for Gene-by-Measured Environment
Interaction Models
Software to perform Haar Fisz transforms
Estimation, simulation and visualization of Hierarchical
Archimedean Copulae (HAC)
Utilities for using R scripts in Hadoop streaming
Hierarchical Optimal Matching and Machine Learning Toolbox
Univariate non-parametric two-sample test based on empirical
Hankel transforms
Inference of trait associations with SNP haplotypes and other
attributes using the EM Algorithm
Analyzing case-parent triad and/or case-control data with SNP
haplotypes
Estimate Haplotype Relative Risks in Case-Control Data
Statistical Analysis of Haplotypes with Traits and Covariates
when Linkage Phase is Ambiguous
Graphical tests for Hardy-Weinberg equilibrium
Full feature implementation of hash/associated
arrays/dictionaries
A collection of non-cryptographic hash functions
Hawkes process simulation and calibration toolkit
Damage functions from FEMA's HAZUS software for use in modeling
financial losses from natural disasters
Hill/Bliss Independence Model for Combination Vaccines
Hierarchical Bayesian Analysis of Recognition Memory
Hierarchical Bayesian Small Area Estimation
Hierarchical Bayesian Space-Time models for Gaussian space-time
data
Interval estimation for the parameters of linear models with
heteroskedasticity (Wild Bootstrap)
High Dimensional Supervised Classification and Clustering
Use known groups in high-dimensional data to derive scores for
plots
Hierarchical DECOmposition of Entropy for Categorical Map
Comparisons
Statistical Analysis Tools for High Dimension Molecular Data
(HDMD)
Highest density regions and conditional density estimation
The Lasso for the Tweedie's Compound Poisson Model Using an
IRLS-BMD Algorithm
Health Effects of Air Pollution and Temperature (HEAT)
Heat exchange calculations during physical activity
Fit statistic for binary dependent variable models
Package for robust estimation using heavy-tailed distributions
Visualizing Hypothesis Tests in Multivariate Linear Models
Hierarchical Exponential-Family Random Graph Models with Local
Dependence
Handy functions for working with HGNC gene symbols and
Affymetrix probeset identifiers
Statistical Analysis and Data Display: Heiberger and Holland
The Hilbert-Huang Transform: Tools and Methods
Simulation from distributions supported by nested hyperplanes
HIBAG -- HLA Genotype Imputation with Attribute Bagging
Hierarchical Climate Regionalization: An Improved Hierarchical
Clustering in R for Climate Regionalization
Conduct the F test for hidden additivity in two-factor
experiments
Inference on High Dimensional Max-Stable Distributions
Functions for performing hierarchical analysis of distance
sampling data
Estimation and tests of hierarchical F-statistics
A graphical user interface for calculating power and sample size
for hierarchical data
Determining and evaluating high-risk zones
Estimation of heritability in high dimensional Linear Mixed
Models
Tools for hypothesis testing based on Hypergeometric
Intersection distributions
Hierarchical Semiparametric Regression of Test Statistics
Data sets from the history of statistics and data visualization
Construction of regular and irregular histograms with different
options for automatic choice of bins
"Hit and Run" method for sampling uniformly from convex shapes
HIV calibrated model life tables for countries with generalized
HIV epidemics
Conversion Tools for HK80 Geographical Coordinate System
Diagnostic tools for hierarchical (multilevel) linear models
Hierarchical latent space network model (HLSM)
The H-measure and other scalar classification performance
metrics
Hidden Markov Model for Continuous Observations Processes
Hidden Markov models with discrete non-parametric observation
distributions
Analysing accelerometer data using hidden Markov models
Hypothesis Testing and Power Calculations for Comparing
Metagenomic Samples from HMP
Statistical Object Oriented Data Analysis of RDP-based Taxonomic
trees from Human Microbiome Data: Modeling, Visualization, and
Two-Group Comparison
Flux estimation with static chamber data
Holiday and halfday data, for use with the TimeWarp package
Homogeneity tests for Regional Frequency Analysis
Hot Deck Imputation Methods for Missing Data
A lower bound for the number of correct rejections
Heligman Pollard mortality model parameter estimation using
Bayesian Melding with Incremental Mixture Importance Sampling
High Performance Cluster Models Based on Kiefer-Wolfowitz
Recursion
A set of annotation maps describing the Human Phenotype Ontology
Functions to plot graphviz style graphs of sets of HPO terms
Analysis semantic similarity between HPO terms and HPO-based
phenotypic similarity between genes and between diseases
Miscellaneous convenience functions and dataset
A Handbook of Statistical Analyses Using R
A Handbook of Statistical Analyses Using R (2nd Edition)
A Handbook of Statistical Analyses Using R (3rd Edition)
hierarchical Bayesian species distribution models
Canonical Correlation Analysis based on Kernel Independence
Measures
Phasing, sire imputation, recombination events identification
and pedigree reconstruction of half-sib families using SNP data
Joint meta-analysis of diagnostic test sensitivity and
specificity with or without a gold standard reference test
Facilitates automated HTML report creation
Clustering high throughput sequencing (HTS) data
Differential analysis of RNA-seq data with Poisson mixture
models
compute HUM value and visualize ROC curves
Models and tests for departure from Hardy-Weinberg equilibrium
and independence between loci
Bayesian investigation of Hardy-Weinberg Equilibrium via
estimation and testing
Objective Bayesian Testing for the Hardy-Weinberg Equilibrium
Problem
Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
HTML Writer - Outputs R objects in HTML format
hwriterPlus: Extending the hwriter Package
Exact Tests for Hardy-Weinberg Proportions
Build, deploy and evaluate a Hybrid Ensemble
Implementation of the Hybrid Monte Carlo and Multipoint Hybrid
Monte Carlo sampling techniques
Tools and models for hydrological applications
Groundwater data presentation and interpretation
Goodness-of-fit functions for comparison of simulated and
observed hydrological time series
R codes for estimating water retention and infiltration model
parameters using experimental data
Particle Swarm Optimisation, with focus on Environmental Models
Hydrologic indices for daily time series data
Time series management, analysis and interpolation for
hydrological modelling
A generalization of the Dirichlet distribution
Interface for hyperspectral data, i.e. spectra + meta info
(spatial, time, concentration, ...)
High-dimensional kernel density estimation and geometry
operations
Macroevolutionary phylogentic analysis of species trees and gene
trees
Confidence Intervals and Tests of Statistical Hypotheses
Simulation of genomic data in applied genetics
Tools for Modeling Rate-Dependent Hysteretic Processes and
Ellipses
Model selection for index of asymmetry distribution
Functions to use with data from the Implicit Association Test
Integrative Bayesian Analysis of Transcriptomic and CGH data
Functions for the Analysis of IBD Haplo output
Regression Methods for IBD Linkage With Covariates
Simulation of chromosomal regions shared by family members
Irregular-lattice based ensemble empirical mode decomposition
An R Package for Implementing Belief Functions
Iboot: iterated bootstrap tests and confidence sets
R API to Interactive Brokers Trader Workstation
An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
A copy number and expression-based classifier for breast
tumours
Inequality and Concentration Indices and Curves
Standardized high-throughput evaluation of cell-based compound
screens
Independent Components Analysis (ICA) based artifact correction
Functions facilitating the estimation of the Intraclass
Correlation Coefficient
Tools for Working with ICD-9 Codes, and Finding Comorbidities
Individual Conditional Expectation Plot Toolbox
Incremental Cost-Effectiveness (ICE) Statistical Inference from
Two Unbiased Samples
Study Design and Data Analysis in the presence of error-prone
diagnostic tests and self-reported outcomes
Estimation of number of clusters and identification of atypical
units
Inequality constrained inference in linear normal situations
Integrative clustering of multiple genomic data types
Tools for Exploring Multivariate Data via ICS/ICA
A package for semiparametric regression analysis of
interval-censored data
Jacquard Condensed Coefficients of Identity
Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch)
Imprecise Dirichlet Process for Survival Analysis
R Analysis package for iDynoMiCS Simulation Results
Functions to set and get the IEEE rounding mode
An integrative factor analysis model for drug-pathway
association inference
Read binary files saved by Igor Pro (including Neuromatic data)
A collection of network data sets for the igraph package
Convert iGraph graps to SoNIA .son files
Consistency, Homogeneity and Summary Statistics of
Climatological Data
Identifying Causal Effect for Multi-Component Intervention Using
Instrumental Variable Method
Minimum distance estimation in an imprecise probability model
A collection of methods for left-censored missing data
imputation
The Multifactor Dimensionality Reduction (MDR) Analysis for
Incomplete Data
Imputing the last largest censored observation/observations
under weighted least squares
Mixture models for longitudinal count data
Nonparametric tests of independence between random vectors
Studying the statistical relationship between species and groups
of sites
Measuring Inequality, Concentration, and Poverty
Infine-dimensional model (IDM) to analyse phenotypic variation
in growth trajectories
Functions to extract inferential values of a fitted model object
Inference about the standardized mortality ratio when evaluating
the effect of a screening program on survival
Tools for detecting influential data in mixed effects models
Case Influence in Structural Equation Models
Information Decomposition of Two-phase Experiments
R Tools for Creating Sequence Statistics
Inline C, C++, Fortran function calls from R
Convert inline comments to documentation
insideRODE includes buildin functions with deSolve solver and
C/FORTRAN interfaces to nlme, together with compiled codes
Using R to install stuff (such as: R, Rtools, RStudio, git, and
more!)
A Collection of Insurance Datasets Useful in Risk Classification
in Non-life Insurance
procedures for automated interpolation - methods only to be used
interactively, not included in intamap package
Iterated Convex Minorant Algorithm for interval censored event
data
Tests for marginal interactions in a 2 class response model
interactive network analysis and visualization
Coercion routines for network data objects in R
Hourly interpolation of multiple temperature daily series
Weighted Logrank Tests and NPMLE for interval censored data
Tools for working with points and intervals
Interventional Inference for Dynamic Bayesian Networks
Numerical Integration for Integrated Likelihood
linear programming solver by the interior point method and
graphically (two dimensions)
methods for analyzing introgression between divergent lineages
Threshold regression that fits the (randomized drift) inverse
Gaussian distribution to survival data
A unified framework for input-output operations in R
Functions for smoothing with infinite order flat-top kernels
Tools for subgroup analyses with multiple trial data using
aggregate statistics
ipdw: Interpolation by Inverse Path Distance Weighting
Fast implementation of the iterative proportional fitting
procedure in C
Builds and analyses Integral Projection Models (IPMs)
Introduction to Probability and Statistics Using R
Regression methods for interval-valued variables
Fast partial SVD by implicitly-restarted Lanczos
bidiagonalization
Various Coefficients of Interrater Reliability and Agreement
Simple interface to the estimation and plotting of IRT models
Utilities and Probability Distributions Related to
Multidimensional Person Item Response Models
Estimation of Tree-Based Item Response Models
Iterative Selection of Blocks of Features - ISBF
image-based High-Throughput RNAi Screening Analysis Tool
Provides datasets for Introduction to Statistical Data Analysis
for the Life Sciences
Fitting Ising models using the eLasso method
Sampling methods and distribution functions for the Ising model
Data for An Introduction to Statistical Learning with
Applications in R
An Introduction to Statistical Modeling of Extreme Values
Functions to perform isotonic regression
Confidence intervals for current status data based on
transformations and bootstrap
Testing for monotonic relationship between gene expression and
doses in a microarray experiment
Calculation of isotopic pattern for a given molecular formula
Active set and generalized PAVA for isotone optimization
Penalized Isotonic Regression in one and two dimensions
Week of the year and weekday according to ISO 8601
Approximate probability densities by iterated Laplace
Approximations
Efficient iterator for permutations and combinations
itertools2: Functions creating iterators for efficient looping
Tools for classification and regression trees, with an emphasis
on interpretability
Time series analysis package for students
Incorporating Uncertainties in Propensity Scores
Bayesian Instrumental Variable Estimation and Model
Determination via Conditional Bayes Factors
Instrumental fixed effect panel data model
A data analysis tool for in vitro-in vivo correlation (IVIVC)
Uses heteroscedasticity to estimate mismeasured and endogenous
regressor models
Improved methods for causal inference and missing data problems
A Fast Parameter Estimation Method for Evolutionary Biology
Jackknife estimates of Kaplan-Meier estimators or integrals
Non-parametric Jackstraw for Principal Component Analysis
JADE and other BSS methods as well as some BSS performance
criteria
Joint Analysis of Genotype and Group-specific Variability Using
a Novel Score Test Approach to Map eQTL
R modules for JASPAR databases: a collection of transcription
factor DNA-binding preferences, modeled as matrices
Performs the Joint Graphical Lasso for sparse inverse covariance
estimation on multiple classes
Joint Modeling of Longitudinal and Survival Data
Joint Modeling of Longitudinal and Time-to-Event Data under a
Bayesian Approach
Joint modelling of repeated measurements and time-to-event data
Joint Approximate Diagonalization of a set of square matrices
Risk estimation using the joint probability method
Joint Modelling of Mixed Correlated Binary and Continuous
Responses : A Latent Variable Approach
Functions for some unit-level small area estimators and their
variances
Methods for population-based cancer survival analysis
A Robust, High Performance JSON Parser and Generator for R
JudgeIt: A Program for Evaluating Electoral Systems and
Redistricting Plans
Package to identify and sort genes overexpressed
Non-additive measure and integral manipulation functions
Sample Size Estimation Functions for Studies of Interobserver
Agreement
Calculates "vectorial Kappa", an index of congruence between
patchy mosaics
K-Adaptive Partitioning for Survival data
Kinetic analysis and visualization of DCE-MRI data
Nonparametric method for identifying discordant phylogenetic
trees
Kernel Estimator and Bandwidth Selection for Density and its
Derivatives
Calculate solutions to the Kelvin differential equation using
Bessel functions
Kendall rank correlation and Mann-Kendall trend test
Nonparametric kernel estimation of the distribution function.
Bandwidth selection and estimation of related functions
Kernel Factory: An ensemble of kernel Machines
Functions for kernel smoothing for Wand & Jones (1995)
Kalman Filter and Smoother for Exponential Family State Space
Models
Kalman Filter, Smoother and Disturbance Smoother
Routines for fitting kinetic models to chemical degradation data
Spectral response of water wells to harmonic strain and pressure
Linear equations with Kronecker structure
Kaplan - Meier estimator with constraints for right censored
data -- a recursive computational algorithm
Confidence intervals for the Kaplan-Meier estimator
Kaplan-Meier Simultaneous Confidence Band for the Survivor
Function
Kaplan-Meier multiple imputation for the analysis of cumulative
incidence functions in the competing risks setting
Clustering longitudinal data using the likelihood as a metric of
distance
Data sets from Klein and Moeschberger (1997), Survival Analysis
A general-purpose package for dynamic report generation in R
Tools for the provision of scientific fisheries management
advice
A genetic algorithm for fixed-size subset selection
An improved evaluation of Kolmogorov's distribution
Kriging-based Inversion for Deterministic and Noisy Computer
Experiments
Kernel-based Regularized Least squares (KRLS)
K-Sample Rank Tests and their Combinations
Check the power of seveal statistical models
Configurable function for solving families of nonlinear
equations
k-Top Scoring Pairs for Microarray Classification
Datasets and functions from the (now non-existing) Faculty of
Life Sciences, University of Copenhagen
Kolmogorov-Zurbenko Fourier Transform and Applications
Kolmogorov-Zurbenko Spatial Smoothing and Applications
l2boost - Friedman's boosting algorithm for regularized linear
regression
Ordination and Multivariate Analysis for Ecology
Relabelling MCMC outputs of mixture models
Convert labels or tables to a dendrogram
Libreria del Laboratorio di Statistica con R
Estimation of indicators on social exclusion and poverty
Duncan test, Tukey test and Scott-Knott test
Local Approximate Gaussian Process Regression
Tools for the analysis of ecosystem metabolism
Collection of Internal Consistency Reliability Coefficients
Modeling Data with Functional Programming
Tools for modeling data with functional programming
Analyze and Gaussianize skewed, heavy-tailed data
Radiometric and topographic correction of satellite imagery
Data sets and functions with "Analyzing Linguistic Data: A
practical introduction to statistics"
Local Average Response Functions for Instrumental Variable
Estimation of Treatment Effects
Least Angle Regression, Lasso and Forward Stagewise
Likelihood Analysis of Speciation/Extinction Rates from
Phylogenies
high-dimensional inference with the penalized score test
L1 regularized regression (Lasso) solver using the Cyclic
Coordinate Descent algorithm aka Lasso Shooting
Draws diagrams useful for checking latent scales
Latent position and cluster models for statistical networks
Functions to calculate common laterality statistics in
primatology
Density estimation and nonparametric regression on irregular
regions
Extra Graphical Utilities Based on Lattice
Multiresolution Kriging based on Markov random fields
Complex survey Structural Equation Modeling (SEM)
An R package for biostatistics, public policy, and law
Length-biased correction to survival curve estimation
Latent Class Analysis (LCA) with familial dependence in extended
pedigrees
Data sets for package ``LMERConvenienceFunctions''
Estimation of Extended Mixed Models Using Latent Classes and
Latent Processes
Local Correlation, Spatial Inequalities and other tools
Collapsed Gibbs sampling methods for topic models
Lan-DeMets Method for Group Sequential Boundaries
Linkage disequilibrium corrected by the structure and the
relatedness
Efficient Whole-Genome LD Based Haplotpe Block Recognition
Graphical display of pairwise linkage disequilibria between SNPs
LD LASSO Regression for SNP Association Study
Finding Locally D-optimal optimal designs for some nonlinear and
generalized linear models
Methods for likelihood-based dimension reduction in regression
Exact tests for Linkage Disequilibrium and Hardy-Weinberg
Equilibrium
Fits, plots, and summarizes leaf angle distributions
Interactive web-maps based on the Leaflet JavaScript library
Likelihood Estimation of Admixture in Parents From Offspring
Genotypes
latent effect adjustment after primary projection
Functions for Learning Bayesian Inference
Data and functions to accompany the book "Learning R"
Phylogenetic and Functional Analyses for Ecology
Functions and datasets to accompany the book "Le logiciel R:
Maitriser le langage, Effectuer des analyses statistiques"
(french)
Tools for data handling and analysis in macroecology
Calculation of Low Flow Statistics for daily stream flow data
Tools for linear grouping analysis (LGA)
Simulation and estimation of log-GARCH models
simulating Linkage Group Selection (LGS)
A set of methods for longitudinal data objects
Computational routines for proton and ion radiotherapy
Linear Predictive Models Based On The liblinear C/C++ Library
Light Cone Reconstruction of States - Predictive State
Estimation From Spatio-Temporal Data
Sensitivity Analysis for Case Weight in Normal Linear Regression
A package to perform actuarial mathematics for life
contingencies insurances
A package to implement HMD model life table system
Methods for maximum likelihood estimation
Linear Inverse Model examples and solution methods
Jitter/CI Plot with Ordered Points Below the Limit of Detection
Functions to Explore L-Systems (Lindenmayer Systems)
Tools for Generating, Visualizing, and Analysing Link
Communities in Networks
Linkage information based genotype imputation method
Interactive Interpretation of Linear Regression Models
Fitting lasso penalised additive isotone models
Statistical Methods for the Item Count Technique and List
Experiment
Tests of independence based on the Longest Increasing
Subsequence
Leveraging Learning to Automatically Manage Algorithms
Local Log-linear Models for Capture-Recapture
Linear Model Bias Correction for RNA-Seq Data
Add Standardized Regression Coefficients to lm-Objects
Linear mixed-effects models using Eigen and S4
Linear Mixed-Effects Models with Censored Responses
Fit negative binomial mixed-effect regression model
Sample from the posterior of the negative binomial mixed-effect
regression model. The random effect is modeled with DP mixture
of beta distributions
A suite of functions to back-fit fixed effects and forward-fit
random effects, as well as other miscellaneous functions
Tests for random and fixed effects for linear mixed effect
models (lmer objects of lme4 package)
Add smoothing spline modelling capability to nlme
Fit Latent Markov models in basic versions
Testing for a subset of variance components in linear mixed
models
Functions for estimation and inference of selection in
age-structured populations
Goodness-of-fit-measures for linear mixed models with
one-level-grouping
Linear mixed effect model splines for modelling and analysis of
time course data
L-moments, Censored L-moments, Trimmed L-moments, L-comoments,
and Many Distributions
Regional frequency analysis using L-moments
loa: various plots, options and add-ins for use with lattice
Local Regression, Likelihood and Density Estimation
Test of stationarity and localized autocovariance
Datasets for "Statistics: UnLocking the Power of Data"
A simple logging system for R, based on log4j
Relative Risk Regression Using the Log Binomial Model
Log-concave Density Estimation in Arbitrary Dimensions
Maximum likelihood estimation of a log-concave density based on
censored data
Estimate a Log-Concave Probability Density from iid Observations
Compute MLE of Log-Concave Density on R with Fixed Mode, and
Perform Inference for the Mode
Estimate a Log-Concave Probability Mass function from Discrete
i.i.d. Observations
LOGICOIL: multi-state prediction of coiled-coil oligomeric
state
Firth's bias reduced logistic regression
Diagnostic tests for logistic regression models
Fitting l2-regularized logit choice models via generalized
gradient descent
Infer network based on binary arrays using regularized logistic
regression
Functions for the logitnormal distribution
Double log normal distribution functions
Log-multiplicative models, including association models
Logrank Test for Aggregated Survival Data
Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Package for Plotting Categorical Longitudinal and Time-Series
Data
Statistics for Long-Memory Processes (Jan Beran) -- Data and
Functions
Sample size calculations for longitudinal data
loop decomposition of weighted directed graphs for life cycle
analysis, providing flexbile network plotting methods, and
analyzing food chain properties in ecology
A collection of tools to conduct Levins' Loop Analysis
Logistic Regression Differential Item Functioning using IRT
LOw Rand and sparsE Covariance matrix estimation
Missing morphometric data simulation and estimation
Lassoed principal components for testing significance of
features
Local polynomial estimators of intensity function or its
derivatives
Merging linkage maps by linear programming
Modeler for linear programs (LP) and mixed integer linear
programs (MILP)
Linear Predictor Score, for binary inference from multiple
continuous variables
Interface to Lp_solve v. 5.5 to solve linear/integer programs
R Interface for lp_solve version 5.5.2.0
Learned Pattern Similarity and Representation for Time Series
Different types of estimators to deal with multicollinearity
Locally stationary two-dimensional wavelet process estimation
scheme
A Multiscale Test of Spatial Stationarity for LS2W processes
Applied Latent Semantic Analysis (LSA) functions
Local Statistical Complexity - Automatic Pattern Discovery in
Spatio-Temporal Data
American options pricing with Least Squares Monte Carlo method
Companion package to "Learning Statistics with R"
the accelerated failure time model to right censored data based
on least-squares principle
Simulation-Based Bayesian Inference for Latent Traits of Item
Response Models
Longitudinal Targeted Maximum Likelihood Estimation
LTPD and AOQL plans for acceptance sampling inspection by
variables
Ridge and Liu Estimates based on LTS (Least Trimmed Squares)
Method
Likelihood inference from case-control data Under Covariate
Assumptions (LUCA)
Package for Luminescence Dating data analysis
Lunar Phase & Distance, Seasons and Other Environmental Factors
A Latent Variable Model for Mixed Continuous and Ordinal
Responses
Accurate Estimation of Clonal Coincidences and Abundances from
Biological Replicates
Class prediction based on microarray data and clinical
parameters
Meta-Analysis of Diagnostic Accuracy (mada)
This package provides some basic methods for meta-analysis
A Flexible Microarray Data Simulation Model
Pretty scientific plotting with minor-tick and log minor-tick
support
Matrix Algebra on GPU and Multicore Architectures
magrittr - a forward-pipe operator for R
Creates an empty package framework for the LCFD format
EM Estimation of Malaria Haplotype Probabilities from Multiply
Infected Human Blood Samples
Quantitative Analysis of Mass Spectrometry Data
A wrapper around the Java machine learning tool MALLET
Calculation of Minimum Averaged Mean Squared Error (MAMSE)
weights
Multiple testing procedures of Cox (2011) and Wang and Cox
(2007)
Mapping Markers to the Nearest Genomic Feature
Mapping Smoothed Effect Estimates from Individual-Level Data
Geographic display of survey data statistics
Tools for reading and handling spatial objects
Mapping, pruning, and graphing tree models
Multivariate Autoregressive Modeling for Analysis of Community
Time-Series Data
Multiplicative AR(1) with Seasonal Processes
Estimation of meiotic recombination rates using marey maps
Approximate marginal inference for regression-scale models
Log Marginal Likelihood of Gaussian Mixture
A package to handle and analyse discrete Markov chains
Statistical significance of the Markowitz portfolio
An algorithm for least-squares curve fitting
Mandallaz' model-assisted small area estimators
Support Functions and Datasets for Venables and Ripley's MASS
Body Mass Estimation Equations for Vertebrates
ML and MCMC Methods for Pedigree Reconstruction and Analysis
Multivariate and Propensity Score Matching with Balance
Optimization
Computation of the Balance - Sample Size Frontier in Matching
Methods for Causal Inference
MatchIt: Nonparametric Preprocessing for Parametric Casual
Inference
Measuring Association and Testing Independence Efficiently
Sparse and Dense Matrix Classes and Methods
Collection of functions for matrix calculations
MatrixEQTL: Ultra fast eQTL analysis via large matrix operations
Modelling with Sparse And Dense Matrices
Matrix-based Partial Least Squares estimation
Methods that apply to rows and columns of a matrix
Modern Calibration Functions for the Modern Analog Technique
(MAT)
Three methods to identify differentially expressed gene sets,
ordinary least square test, Multivariate Analysis Of Variance
test with n contrasts and Random forest
Exact max-type Cochran-Armitage trend test(CATT)
Low-memory Multinomial Logistic Regression with Support for Text
Classification
Model species distributions by estimating the probability of
occurrence using presence-only data
Moment-Based Estimation for Hierarchical Models
Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
Model Based Multifactor Dimensionality Reduction
Tools for Two-Dimensional Monte-Carlo Simulations
Translates information from netcdf files with MC2 output into
inter-PVT transitions
Matrix Computation Based Identification Of Prime Implicants
Machine coded genetic algorithms for real-valued optimization
problems
Warnes and Raftery's MCGibbsit MCMC diagnostic
Global optimization using Monte Carlo and Quasi Monte Carlo
simulation
Monte Carlo hypothesis tests with Sequential Stopping
IRT models for multiple choice items (mcIRT)
Normal Mixture Modeling for Model-Based Clustering,
Classification, and Density Estimation
Hybrid Markov chain Monte Carlo using Gaussian Processes
Bayesian analysis of multivariate counts data
Multiple Criteria Optimization Algorithms and Related Functions
Conjoint Analysis through Averaging of Multiple Analyses
Multiple comparisons using normal approximation
Run a Regenerative Markov chain in Parallel on a Cluster
A Monte Carlo permutation method for multiple test correlation
Design and Analysis of Dose-Finding Studies (see also
DoseFinding package)
Functions for Monte Carlo Methods with R
Mixture and flexible discriminant analysis
Multivariate data analysis for chemometrics
Measuring the difference between two empirical distributions
Detect gene-gene interactions using multifactor dimensionality
reduction
Functions for Analysis of Data with General Recognition Theory
Detection and Control of Tree-Ring Widths on Scanned Image
Sections of Dendrochronological Samples
Maximum Entropy Bootstrap for Time Series
Bayesian Methods for Identifying the Most Harmful Medication
Errors
A max-margin supervised Sparse Topical Coding Model
Multivariate Data Handling in Ecology and Biogeography
Multivariate Data Handling with S4 Classes and Sparse Matrices
Interactive model exploration using GGobi
Spatial pattern detection in genetic distance data using Moran's
Eigenvector Maps
Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Data sets from Mixed-effects Models in S
Estimate the memory usage of dense, in-core, numeric objects
Meta-analysis of genome-wide SNP association results
Probabilistic latent variable models for metabolomic data
Analysis of the 'elements of metacommunity structure'
MetaDE: Microarray meta-analysis for differentially expressed
gene detection
Metapopulation simulations for conserving salmon through
portfolio optimization
Inference in Meta Analysis and Meta Regression
Likelihood inference in meta-analysis and meta-regression
models
Diagnostic and prognostic meta analysis (metamisc)
Bayesian Mixture Analysis for Metagenomic Community Profiling
MetaPCA: Meta-analysis in the Dimension Reduction of Genomic
data
MetaQC: Objective Quality Control and Inclusion/Exclusion
Criteria for Genomic Meta-Analysis
Advanced statistical methods to model and adjust for bias in
meta-analysis
Meta analysis for SNP-set (Sequence) Kernel Association Test
Meta-analysis for Classification Data and Correction to
Imperfect Reference
Retrieve meteorological forecast from Meteogalicia and OpenMeteo
services
Meth27QC: sample quality analysis, and sample control analysis
Functions for analysis of agreement in method comparison
studies
Pharmacometric tools for data preparation, modeling, simulation,
and reporting
A Fixed Memeory Moving Expanding Window Average
Fitting and Simulation of a block multifactor model
Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness
estimation
Multivariate Response Generalized Linear Models
mgpd: Functions for multivariate generalized Pareto distribution
(MGPD of Type II)
Graphing map attributes and non-map variables in R
API Client for the MG-RAST Server of the US DOE KBase
Gene set analysis based on GSZ-scoring function and asymptotic
p-value
General Markov Chain Monte Carlo for Bayesian Inference using
adaptive Metropolis-Hastings sampling
Parameter estimation and prediction for hidden Markov and
semi-Markov models for data with multiple observation
sequences
Missing Data Imputation and Model Checking
Multivariate Imputation by Chained Equations
Some additional multiple imputation functions, especially for
mice
Demand Analysis with the Almost Ideal Demand System (AIDS)
Analysis with the Constant Elasticity of Substitution (CES)
function
Symmetric Normalized Quadratic Profit Function
A Model-based Approach to Identify Binding Sites in CLIP-Seq
Data
Utilities for Official Spanish Microdata
Implementing dispersal into species distribution models
Useful R code for the Estimation of Migration
Multiple Imputation for interval censored data regression
MIcrosimulation Lung Cancer (MILC) model
Mixture summary method for multiple imputation
Data sets included in Utts and Heckard's Mind on Statistics
minerva: Maximal Information-Based Nonparametric Exploration R
package for Variable Analysis
Implementation of the Well-Known Game to Clear Bombs from a
Given Field (Matrix)
Tools to create an internally consistent, mini version of CRAN
with selected packages only
R interface to the Levenberg-Marquardt nonlinear least-squares
algorithm found in MINPACK, plus support for bounds
Gene region-level testing procedure for SNP data, using the min
P test resampling approach
Derivative-free optimization algorithms by quadratic
approximation
An R Package for Linear Mixed Model Analyses
Mutant Identification through Probabilistic High throughput
Enabled NOrmalization
Computerized Adaptive Testing with Multidimensional Item
Response Theory
Nonparametric Missing Value Imputation using Random Forest
Handling missing values with/in multivariate data analysis
(principal component methods)
Testing Homoscedasticity, Multivariate Normality, and Missing
Completely at Random
Mixed effects Score Test for continuous outcomes
Data sets, functions and examples from the book:"Modern
Industrial Statistics" by Kenett, Zacks and Amberti
Mixture of Student t Distributions using Importance Sampling and
Expectation Maximization
Tools for multiple imputation of missing data
Estimation/multiple Imputation for Mixed Categorical and
Continuous Data
Multivariate normal mixture models and mixtures of generalized
linear mixed models including model based clustering
Mixed effects cumulative link and logistic regression models
Estimator with Qudratics Forms in Mixeds Models
Design and analysis of mixture experiments
Model based clustering and classification using the mixture of
generalized hyperbolic distributions
Mixed model ANOVA and statistics for education
mixlow method for assessing drug synergism
Functions to fit mixtures of regressions
Forensic Genetics DNA Mixture Separation
Simulating Data to Study Performance of Clustering Algorithms
Fitting finite mixture of scale mixture of skew-normal
distributions
Tools for analyzing finite mixture models
Mixture Models for Clustering and Classification
Multi-species sIZE spectrum modelling in R
2D and 3D movement-based kernel density estimates (MKDEs)
Routines for fitting kinetic models with one or more state
variables to chemical degradation data
Efficient multi-level k-circulant supersaturated designs
Machine Learning-based Differential Network Analysis of
Transcriptome Data
Machine learning algorithms with unified interface and confusion
matrices
Computation of the MLE for bivariate (interval) censored data
Maximum Likelihood Estimates of Gaussian Processes
Maximum likelihood estimate of penetrance parameters
Independent Component Analysis using Maximum Likelihood
ML estimation under multivariate linear mixed models with
missing values
Examples from Multilevel Modelling Software Review
Bayesian Model Averaging for Multinomial Logit Models
A package for Multilinear Regression Model Population Analysis
Mathematical morphology in any number of dimensions
MMELN : Estimation of multinormal mixture distribution
Model selection uncertainty and model mixing
an R package for analyzing multivariate longitudinal data with
multivariate marginal models
Multivariate marginal models with shared regression parameters
Multi-Marker Molecular Signature for Treatment-specific Subgroup
Identification
Modern measures of population differentiation
Multivariate Nonparametric Methods. An Approach Based on Spatial
Signs and Ranks
Multivariate Normal Distributions with Power Integrand
The multivariate normal and t distributions
R Package for Fitting the Multinomial Probit Model
Multi-objective optimization for collecting cluster alternatives
Multiscale Analysis for Density Functions
Model-free estimation of a psychometric function
Creates Random Forest and Stochastic Gradient Boosting Models,
and applies them to GIS .img files to build detailed prediction
maps
Tools and Classes for Statistical Models
R tools for processing Level 2 Cloud Mask products from MODIS
Modelling temperature effects using time series data
Moments, cumulants, skewness, kurtosis and related tests
Monotone multi-layer perceptron neural network
Estimation for multivariate normal and Student-t data with
monotone missingness
MOPSOCD: Multi-objective Particle Swarm Optimization with
Crowding Distance
Color schemes compatible with red-green color perception
difficulties
Calculations and visualisations related to Geometric
Morphometrics
MOdelling tools for Reproduction and Survival data in
Ecotoxicology
Simple raw data generator based on user-specified summary
statistics
Smoothing and forecasting Poisson counts with P-splines
Project MOSAIC (mosaic-web.org) statistics and mathematics
teaching utilities
Project MOSAIC (mosaic-web.org) data sets
Visualizing and analyzing animal track data
Mixtures of von Mises-Fisher Distributions
Multi-Patient Analysis of Genomic Markers
Multivariate Process Capability Indices (MPCI)
Data sets and scripts for Modeling Psychophysical Data in R
The package can implement the network-based metabolite pathway
identification of pathways
Automating Mplus Model Estimation and Interpretation
Symbolic computation and more with multivariate polynomials
Mposterior: R package for Robust and Scalable Bayes via a Median
of Subset Posterior Measures
Statistics for analysing multiple simultaneous point processes
on the real line
Modeling Phylogenetic Signals using Eigenvector Maps
Multinomial Processing Tree (MPT) Models
Analyze Multinomial Processing Tree Models
Data Sets from Montgomery, Peck and Vining's Book
Metabolomic Quantitative Trait Locus Mapping
Inferences for ratios of coefficients in the general linear
model
Methods for Analyzing Multiple Response Categorical Variables
(MRCVs)
Fits regression models when the outcome is partially missing
An R package for conditional maximum likelihood estimation in
mixed Rasch models
Multivariate Regression Models for Reserving
R package for parallelized mRMR ensemble feature selection
A multiplicative-regression model for relative survival
Multiresolution time warping for functional data
Statistical analysis for Methylation-sensitive Amplification
Polymorphism data
Draws diagrams (mis)representing the results of mass spec
experiments
Visualizes the scoring and binning of microsatellite fragment
sizes
Multiscale Bernstein Polynomials for Densities
Markov-Switching, Bayesian, Vector Autoregression Models
Metabolite set enrichment analysis for factor loading in
principal component analysis
Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS)
data
Modeling non-uniformity in short-read rates in RNA-Seq data
Data and functions for the book Modern Statistical Graphics
High dimensional multiclass classification using sparse group
lasso
A library to serialize or unserialize data in MessagePack format
Degrees of freedom of elastic net, adaptive lasso and
generalized elastic net
Assess Tumor Microsatellite Instability with a Decision Tree
Classifier from Exome Somatic Mutations
Multi-state Markov and hidden Markov models in continuous time
Functions and Datasets for "Methods of Statistical Model
Estimation"
Datasets and Functions used in Multivariate Statistics: Old
School by John Marden
Morse-Smale approximation, regression and visualization
Nonparametric Estimation for Multistate Models
Data preparation, estimation and prediction in multi-state
models
All-purpose toolkit for analyzing multivariate time series (MTS)
and estimating multivariate volatility models
Multivariate time series data imputation
Munich Franz-Josef-Strauss Airport Pattern Analysis
Hazard Function Estimation in Survival Analysis
Simultaneous Inference in General Parametric Models
Multiple Equivalence Tests and Simultaneous Confidence Intervals
GEE Solver for Correlated Nominal or Ordinal Multinomial
Responses
Quantitative linkage analysis tools using the variance
components approach
Performance of N-ary classification testing
Multiple Copy Number Variation Detection
Permutations of multisets in cool-lex order
Multivariate Analysis and Visualization for Biological Data
Multidimensional latent class Item Response Theory models
Regression analysis of overdispersed correlated count data
Simultaneous confidence intervals for multinomial proportions
according to the method by Sison and Glaz
Robust Estimation of Overdispersed Multinomial Regression Models
Generation of multivariate ordinal variates
MultiPhen, a package for the genetic association testing of
multiple phenotypes
Variable Importance Analysis with Population Intervention Models
Weighted Cox-regression for nested case-control data
Analysis of Multiple Social Networks with Algebra
MultiSV: an R package for identification of structural
variations in multiple populations based on whole genome
resequencing
Simultaneous manipulation of multiple arrays of data, with
data.list objects
Common Multiple Testing Procedures and Gatekeeping Procedures
Metabolomics Univariate and Multivariate Analysis
Interpolation of Munsell renotation data to convert any hue and
chroma values to CIE xyY, CIE XYZ, sRGB, CIE Lab or CIE Luv
An Introduction to Applied Multivariate Analysis with R
statistical methods for analysing multivariate abundance data
Workspace organization, code and documentation editing, package
prep and editing, etc
Multivariate Variance Components Tests for Multilevel Data
Wavelet analysis of multiple time series
Multivariate Generalized Linear Mixed Models for Ranking Sports
Teams
Influence Measures and Diagnostic Plots for Multivariate Linear
Models
Multivariate and Univariate Meta-Analysis and Meta-Regression
Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Nelson-Aalen estimator of the cumulative hazard in multistate
models
Software for moving grid adjustment in plant breeding field
trials
ML estimation for multivariate normal data with missing values
Normality test for multivariate variables
Multivariate outlier detection based on robust methods
MVPARTwrap: Additional features for package mvpart
Give power for a given effect size using multivariate
classification methods
Orthant Probability of the Multivariate Normal Distribution
Mean and Variance of Truncated Normal Distribution
Generalized Shapiro-Wilk test for multivariate normality
MultiVariate Stochastic Linear Ornstein-Uhlenbeck models for
phylogenetic Comparative hypotHeses
MWA package for causal inference in spatiotemporal event data
Multichannel wavelet deconvolution with additive long memory
noise
Efficient mixed-level k-circulant supersaturated designs
Integrative immunoinformatics for Mycobacterial diseases in R
platform
Automatic Correlation and Regression Test in a Data Frame
Interface to Myrrix. Myrrix is a complete, real-time, scalable
clustering and recommender system, evolved from Apache Mahout
External jars required for package Myrrix
Wraps libnabo, a fast K Nearest Neighbour library for low
dimensions
Nondetects And Data Analysis for environmental data
Functions to construct (non)additive genetic relatedness
matrices and facilitate animal model analyses
Provide namespace managment functions not (yet) present in base
R
Tools for Nanoparticle Simulation and Calculation of PDF and
Total Scattering Structure Function
Normalize NanoString miRNA and mRNA data
Performs the processing and normalisation of Nanostring miRNA
and mRNA data
Collection of datasets from the ASA 2006 data expo
nat: NeuroAnatomy Toolbox for Analysis of 3D Image Data
NeuroAnatomy Toolbox (nat) Extension for Assessing Neuron
Similarity and Clustering
NeuroAnatomy Toolbox (nat) Extension for Handling Template
Brains
File System Utility Functions for NeuroAnatomy Toolbox
Maximum Likelihood method in estimating effective population
size from genetic data
NbClust package for determining the best number of clusters
NBD-Dirichlet model of consumer buying behavior for marketing
research
functions for non-bipartite optimal matching
Negative Binomial Models for RNA-Sequencing Data
NCBI2R-An R package to navigate and annotate genes and SNPs
Interface to Unidata netCDF (version 4 or earlier) format data
files
Helper functions for use with the ncdf4 package
Regularization paths for SCAD- and MCP-penalized regression
models
Calculating effective sizes based on known demographic
parameters of a population
Estimating the number of essential genes in a genome
Survival Analysis for Cohorts with Missing Covariate Information
netClass: An R Package for Network-Based Biomarker Discovery
Estimating network indices, including trophic structure of
foodwebs in R
NetWeAvers: Weighted Averages for Networks
Tools for using network reporting estimators
Simulate bipartite graphs with fixed marginals through
sequential importance sampling
neuroim: R software for reading, writing and representing brain
imaging data
Functions to generate fMRI data including activated data, noise
data and resting state data
Computes pdf, cdf, quantile and random numbers for 19 general
families of distributions
Parallel Analysis and Non Graphical Solutions to the Cattell
Scree Test
Fitting the centered autologistic and sparse spatial generalized
linear mixed models for areal data
Non-hierarchical evolutionary multi-objective tree learner to
perform cost-sensitive classification
Compiling the NHL Real Time Scoring System Database for easy use
in R
Bayesian NHMM modeling (multiple time series)
Modelling and validation of non homogeneous Poisson processes
(Niche) (R)egion and Niche (Over)lap Metrics for
Multidimensional Ecological Niches
Nonlinear least squares examples from NIST
Linear and Nonlinear Mixed Effects Models
Non-linear mixed-effects modelling in nlme using differential
equations
Datasets and utility functions enhancing functionality of nlme
package
Functions for nonlinear least squares solutions
Higher Order Inference for Nonlinear Heteroscedastic Models
Nonlinear regression in predictive microbiology
Fitting nonlinear models with scale mixture of skew-normal
distributions
Tools for nonlinear regression diagnostics
Utilities and kinship information for behavior genetics and
developmental research using the NLSY
A nondecimated lifting transform for signal denoising
Wald Test of nonlinear restrictions for regression parameters
Algorithms and framework for Nonnegative Matrix Factorization
(NMF)
Numerical Methods and Optimization in Finance
Feed-forward Neural Networks and Multinomial Log-Linear Models
The Lawson-Hanson algorithm for non-negative least squares
(NNLS)
Node Harvest for regression and classification
Implementation of the Natural and Orthogonal InterAction (NOIA)
model
Biplot representations of categorical data
U.S. Census Regional and Demographic Data
Nonparametric Methods for Measuring Efficiency and Productivity
Model Checking and Variable Selection in Nonparametric
Regression
Stratification and matching by the propensity score
Detecting, Combining and Filtering Isotope, Adduct and Homologue
Series Relations in High-Resolution Mass Spectrometry (HRMS)
Data
Quantized simulation data of isotope pattern centroids
Normal (1-d) Mixture Models (S3 Classes and Methods)
Dataset for climate analysis with data from the Nordic region
Analysis of multivariate normal datasets with missing values
Package for exponential power distributions (EPD)
Evaluates complex erf, erfc, Faddeeva, and density of sum of
Gaussian and Student's t
Send push notifications to your smartphone via pushover.net
(ACCOUNT REQUIRED!)
Nonparametric kernel smoothing methods for mixed data types
Perform multiple comparisons and compute simultaneous confidence
intervals for the nonparametric relative contrast effects
Nonparametric Analysis of Longitudinal Data in Factorial
Experiments
Non-parametric Bayesian Multiple Imputation for Categorical Data
Nonparametric Methods for Cognitive Diagnosis
Some nonparametric tests for change-point detection in
(multivariate) observations
Normalised prediction distribution errors for nonlinear
mixed-effect models
Sample Size Calculation for the Proportional Hazards Mixture
Cure Model
Plotting linkage and association results
Non-parametric Maximum-Likelihood Estimation for Competing-Risks
Data
Nonparametric maximum likelihood estimation for random effect
models
tertiary probabilistic model in predictive microbiology for use
in food manufacture
Nonparametric Comparison of Multivariate Samples
Nonparametric Partially-Balanced Incomplete Block Design
Analysis
Parallel nonparametric kernel smoothing methods for mixed data
types
Convenience functions and tests for working with the Net
Promoter Score (NPS)
Nonparametric Smoothing for contaminated data using
Simulation-Extrapolation
Package for Nonparametric Statistical Methods using R
Generalization of Hewitt's Seasonality Test
Data sets from "Nonlinear Regression Analysis and Its
Applications"
NRI for risk prediction models with time to event and binary
response data
Post-normalization of total copy numbers
Simulation and Estimation of the Neyman-Scott Type Spatial
Cluster Models
Elitist Non-dominated Sorting Genetic Algorithm based on R
An R package to accompany Hollander, Wolfe, and Chicken -
Nonparametric Statistical Methods, Third Edition
Numeric routines for optically stimulated luminescence dating
Audioscrobbler data for "R in a Nutshell"
R functions for NetWorkSpaces and Sleigh
Data about flights departing NYC in 2013
Oblique Random Forests from Recursive Linear Model Splits
An R package to assess agreement between observers
Sensitivity analysis for Observational studies
Visualisation of Oceanographic Data and Model Output
Open Document Databases (.odb) management
Support for odfWeave on the survey package
Survival analysis supplement to OpenIntro guide
Multivariate Methods Based on the Oja Median and Related
Concepts
Retrieve Oklahoma Mesonet climatological data
filter the molecular descriptors for QSAR
Maximum likelihood tree models for oncogenesis
Prediction of condition-specific transcription factor
interactions
Software for constructing genetic maps in experimental crosses:
full-sib, RILs, F2 and backcrosses
Efficient authenticated interaction with the O*NET API
Utility functions for dealing with data in Opasnet
(www.opasnet.org) environment
Option Pricing and Estimation of Financial Models in R
Tools for the analysis of air pollution data
The OpenCPU system for embedded scientific computing and
reproducible research
OpenIntro data sets and supplemental functions
Control number of OpenMP threads dynamically
Apache OpenNLP Jars and Basic English Language Models
Tools for Creating and Analysing Air Trajectory Data
Additional binary operators for the R language
Analysing Phenotype Microarray and Growth Curve Data
Example data for analysing OmniLog(R) Phenotype Microarray data
Optimal Combinations of Diagnostic Tests Based on AUC
Estimation of optimal number of biomarkers for two-group
microarray based classifications at a given error tolerance
level for various classification rules
A set of tools to support optimization methods (function
minimization with at most bounds and masks)
Estimation of value and hedging strategy of call and put
options
Computing optimal cutpoints in diagnostic tests
R port of the Scilab optimsimplex module
A Replacement and Extension of the optim() Function
Optimal Two and Three Stage Designs for Single-Arm and Two-Arm
Randomized Controlled Trials with a Long-Term Binary Endpoint
Miscellaneous functions for finance / credit risk analysts
Optimal partitioning of similarity relations
Optimization Toolbox for solving linear systems
Convenient Tools for Working with Oracle Databases
Orca: Counting graphlet orbits in sparse graphs
Several confidence intervals for the odds ratio
Order Restricted Clustering for Microarray Experiments
Estimate procedure in case of first order autocorrelation
Modelling comparison data with ordinal response
Estimate parent distributions with data of several order
statistics
Least Squares, Logistic, and Cox-Regression with Ordered
Predictors
Ordinal Regression for High-dimensional Data
Biplot representations of ordinal variables
Compute least squares estimates of one bounded or two ordered
isotonic regression curves
Concurrent generation of ordinal and normal data with given
correlation matrix and marginal distributions
Selection and/or Smoothing of Ordinal Predictors
Order-restricted Information Criterion-based Clustering
Algorithm
The package deals with Operations Research LOCational Analysis
models
Rigorous - NIfTI+ANALYZE+AFNI Input / Output
Order Restricted Assessment Of Microarray Titration Experiments
Converting Odds Ratio to Relative Risk in Cohort Studies with
Partial Data Information
Collection of functions for orthogonal and orthonormal
polynomials
Design and analysis of observational studies
Ornstein-Uhlenbeck models for phylogenetic comparative
hypotheses
Bayesian reconstruction of disease outbreaks by combining
epidemiologic and genomic data
basic tools for the analysis of disease outbreaks
Outlier Detection using quantile regression for Censored Data
Outlier detection for replicated high-throughput data
Analysis of evolutionary rates in an OU framework
Estimates of coefficient of overlapping for animal activity
patterns
Plot the Australian coastline and states
Performance Attribution for Equity Portfolios
PAC-Bayesian Estimation and Prediction in Sparse Additive
Models
A few useful functions for statisticians
A dependency management system for projects and their R package
dependencies
Attributable Fraction Function for Censored Survival Data
The package can identify the dysregulated KEGG pathways based on
global influence from the internal effect of pathways and
crosstalk between pathways
Pathway analysis methods for genomewide association data
Confidence intervals for the ratio of locations and for the
ratio of scales of two paired samples
Visualization using Eulerian tours and Hamiltonian
decompositions
Rasch Model Parameters by Pairwise Algorithm
Confidence intervals for two sample comparisons
Significance tests for palaeoenvironmental reconstructions
paleobioDB: a package for downloading, visualizing and
processing data from Paleobiology Database
paleofire: an R package to analyse sedimentary charcoal records
from the Global Charcoal Database to reconstruct past biomass
burning
Paleontological and Phylogenetic Analyses of Evolution
Power analysis for random effects in mixed models
Pam: prediction analysis for microarrays
Estimation of Linear AR(1) Panel Data Models with
Cross-Sectional Heteroskedasticity and/or Correlation
A toolbox for writing Sweave or other LaTeX-based papers and
reports
Random Forest Classification with Parallel Computing
Automate parallelization of function calls by means of dynamic
code analysis
Unified interface to some popular parallelization back-ends for
interactive usage and package development
Methods for combining independent subset Markov chain Monte
Carlo (MCMC) posterior samples to estimate a posterior density
given the full data set
Helpers for parameters in black-box optimization, tuning and
machine learning
Horn's Test of Principal Components/Factors
Regularized estimation of partial correlation matrices
parallel implementation of the "segment" function of package
"DNAcopy"
Conduct the Parent-Offspring Test Using Monomorphic SNP Markers
Computing, fitting and validating the Pareto Positive Stable
distribution
Parallelized functions for palaeoecological and
palaeogeographical analysis
Portfolio Allocation and Risk Management Applications
Parallel Mutual Information estimation for Gene Network
reconstruction
Recognize and Parse Dates in Various Formats, Including All ISO
8601 Formats
Partitioning using deletion, substitution, and addition moves
Compute a distance metric between two partitions of a set
Periodic Autoregressive Time Series Models
Prediction and Stability Selection of Tuning Parameters
Package for Analysis of Space-Time Ecological Series
Phylogenetic Assembly with Soft Taxonomic Inferences
Classification using biological pathways as prior knowledge
Basic functions for drawing path diagrams
Pathmox Approach of Segmentation Trees in Partial Least Squares
Path Modeling
Class-focused pattern metric comparisons using simulation
Bayesian Experimental Design for Systems Biology
Perceptual analysis, visualization and organization of spectral
color data in R
Adding Progress Bar to '*apply' Functions
Protracted birth-death model of diversification
Programming with Big Data -- Base Wrappers for Distributed
Matrices
Programming with Big Data -- Demonstrations of pbd Packages
Programming with Big Data -- Distributed Matrix Methods
Programming with Big Data -- Interface to MPI
Programming with Big Data -- Interface to Parallel Unidata
NetCDF4 Format Data Files
Programming with Big Data --- MPI Profiling Tools
Programming with Big Data -- Scalable Linear Algebra Packages
A set of datasets used in my classes or in the book ,,Modele
liniowe i mieszane w R, wraz z przykladami w analizie danych''
Parametric bootstrap and Kenward Roger based methods for mixed
model comparison
Mapping Fisheries Data and Spatial Analysis Tools
GUI Tools Made Easy: Interact with Models, Explore Data, Give
Dynamic Presentations
Methods for graphical models and causal inference
Multivariate analysis for a mixture of quantitative and
qualitative data
Parallel Analysis for ordinal and numeric data using polychoric
and Pearson correlations with S3 classes
Semiparametric regression analysis of panel count data using
monotone splines
Preconditioned Conjugate Gradient Algorithm for solving Ax=b
Implementation of POSIXct work-alike for 365 and 360 day
calendars
IRT models for polytomous and continuous item responses
PCIT algorithm - Partial Correlation Coefficient with
Information Theory
Methods for patient-centered network meta-analysis
PCPS - Principal Coordinates of Phylogenetic Structure
A package implementing the coalescent approach to PCR simulation
developed by Weiss and von Haeseler (NAR, 1997)
Calculate the probability of correct selection (PCS)
Panel-Corrected Standard Error Estimation in R
Cluster analysis via nonparametric density estimation
Fetch economic and financial time series data from public
sources
Proximal/distal modeling framework for Pavlovian conditioning
phenomena
Positive definite sparse covariance estimators
Periodogram Peaks in Correlated Time Series
Package for Periodic Autoregression Analysis
Maximum Likelihood Inference for the Pearson VII Distribution
with Shape Parameter 3/2
Independent component analysis using score functions from the
Pearson system
Prediction Error Curves for Survival Models
Functions to facilitate power and sensitivity analyses for
genetic studies of natural populations
An implementation for association analysis with CNV data
Population and Evolutionary Genetics Analysis System
Functions for Aster Book on Inverse Theory
A Penalized EM algorithm incorporating missing-data mechanism
L1 (lasso and fused lasso) and L2 (ridge) penalized estimation
in GLMs and in the Cox model
Penalized classification using Fisher's linear discriminant
Feature Selection SVM using penalty functions
Flexible Copula Density Estimation with Penalized Hierarchical
B-Splines
Density Estimation with a Penalized Mixture Approach
Flexible Pair-Copula Estimation in D-vines using Bivariate
Penalized Splines
Group l1 penalized logistic normal multinomial (LNM) regression
model
Estimating regularized multistate models using L1 penalties
Simulation of high-dimensional data and parallelized repeated
penalized regression
Parallelised Estimation of Prediction Error
Insilico peptide mutation, digestion and homologous comparison
Evaluation of diversity in nucleotide libraries
Calculate indices and theoretical physicochemical properties of
peptides and protein sequences
Package for Periodic Time Series Analysis
PerfMeas: Performance Measures for ranking and classification
tasks
Econometric tools for performance and risk analysis
An infra-structure for performance estimation of predictive
models
Permutational algorithm to simulate survival data
permPGU: Using GPUs in Statistical Genomics
Permutation test to compare variability within and distance
between two groups
Functions for generating restricted permutations of data
Resampling-based prediction error estimation for regression
models
Analysis of single serving and composite pesticide residue
measurements
Simulation and Reconstruction of PET Images
Generalized Least Square in comparative Phylogenetics
Recursive method for construction of nested resolvable designs
and uniform designs associated
Pharmacometric Power calculations for mixed study designs
Phase Plane Analysis of One and Two Dimensional Autonomous ODE
Systems
Auxiliary functions for phenological data analysis
Auxiliary functions for phenological data processing, modelling
and result handling
Pheno2Geno - Generating genetic markers and maps from molecular
phenotypes
Tools to manage a parametric function that describes phenology
Evaluation of the proportional hazards assumption with a
standardized score process
Proportional Hazards Mixed-effects Model (PHMM)
R tools for phoneticians and phonologists
R interface to the phreeqc geochemical modeling program
Panel Data Analysis with Heterogeneous Time Trends
PhViD: an R package for PharmacoVigilance signal Detection
Marks periods of sleep in Actigraph accelerometer data
An extension of some of the classes in phylobase.  Tree objects
now support subnodes on branches
Base package for phylogenetic structures and comparative data
Integrating Phylogenetics and Climatic Niche Modeling
Modelling Competitive Exclusion and Limited Dispersal in a
Statistical Phylogeographic Framework
R package for simulating biological sequence evolution
Phylogenetic Tree Topological Properties Evaluator
Implements the Phylogenetic Regression of Grafen (1989)
Process Physical Activity Accelerometer Data
Phylogenetic Tools for comparative biology (and other things)
Estimating the proportion of true null hypotheses for FDR
R tools for integrating phylogenies and ecology
Pathwise Calibrated Sparse Shooting Algorithm
Self contained gene set analysis for gene- and
pathway-environment interaction analysis
Tools for Harnessing MLBAM Gameday data and Visualizing PITCHf/x
R front-end to PostgreSQL and Pivotal (Greenplum) database,
wrapper for MADlib
A Data Analysis Tool for Pharmacokinetics
Create Simple Packages Which Do Not Upset R CMD check
Model diagnostics for population pharmacokinetic models
pkgutils -- Utilities for creating R packages
Public Key Infrastucture for R based on the X.509 standard
A reporting pipeline for checking population pharmacokinetic
model assumption
unified computational interfaces for pop PK
Dynamic Updating Methods For Player Ratings Estimation
Probabilistic latent feature analysis of two-way two-mode
frequency data
Multiplicity control using Pooled LIS statistic
Additive partially linear models for differential gene
expression analysis
Polytomous logit-normit (graded logistic) model estimation
Multivariate Ordered Probit Model via Pairwise Likelihood
Plot scatter points for two groups of values
Plotting multi-dimensional data - using rgl
Plot spatial or spatio-temporal data over Google Maps
Visualization of spatial and spatio-temporal objects in Google
Earth
Plot a model's response while varying the values of the
predictors
Plot principal component histograms around a scatter plot
Creates an envelope that surrounds a set of points plotted in a
two dimensional space
Graphing nonlinear latent variable interactions in SEMM
Log Linear by Linear Association models and Rasch family models
by pseudolikelihood estimation
Statistical inference in partial linear regression models
Partial Least Squares and Principal Component regression
Partial Least Squares (PLS) Data Analysis Methods
Degrees of Freedom and Statistical Inference for Partial Least
Squares Regression
Tools for Partial Least Squares Path Modeling (PLS-PM)
Partial least squares Regression for beta regression models
Partial least squares Regression for Cox models and related
techniques
Partial least squares Regression for generalized linear models
Tools for splitting, applying and combining data
Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Transforms input data from a PMML perspective
Probit-Normal Marginalized Transition Random Effects Models
Dose-finding in drug combination Phase I trials using the
partial order continual reassessment method (PO-CRM)
Classification and clustering of sequencing data based on a
Poisson model
Poisson lognormal and bivariate Poisson lognormal distribution
Simultaneous generation of multivariate data with Poisson and
normal marginals
Fit high dimensional mixtures of Poisson GLMs
Significance analysis of sequencing data based on a Poisson log
linear model
Polytomous variable Latent Class Analysis
Implementation of the Polya-Aeppli distribution
A collection of functions to implement a class for univariate
polynomial manipulations
Paternity exclusion in autopolyploid species
Tools for Polyploid Microsatellite Analysis
Simulate and test marker dosage for dominant markers in
autopolyploids
Bayesian mixture models for marker dosage in autopolyploids
Polytomous logistic regression for fixed and mixed effects
Bootstrapped Basis Regression with Oracle Model Selection
Polynomial (ordinary differential equation) Model Search
Statistical inference for partially observed Markov processes
Construction and analysis of matrix population models
Provides Tools For Demographic Modelling Using Projection
Matrices
Population (and individual) optimal Experimental Design
Useful functions for (batch) file conversion and data resampling
in microsatellite datasets
An Efficient Swiss Army Knife for Population Genomic Analyses
PopGen: A simple way to analyse and visualize population genetic
data
This is an R package that constructs and manipulates population
graphs
For interval estimation of mean of selected populations
an R package for genetic analysis of populations with mixed
reproduction
popRange: A spatially and temporally explicit forward genetic
simulator
Reconstruct population counts, fertility, mortality and
migration rates of human populations of the recent past
Self-Organizing Maps With Population Based Convergence Criterion
Portmanteau Tests for Univariate and Multivariate Time Series
Models
Framework for simulating equity portfolio strategies
Markov Chain Monte Carlo for Potts Models
Computation of Power and Level Tables for Hypothesis Tests
Power and Sample size distribution of 2-stage BE studies via
simulations
Power Calculations for GxE and GxG Interactions for GWAS
Fitting heavy tailed distributions: the poweRlaw package
Power/Sample size calculation for mediation analysis, simple
linear regression, logistic regression, or longitudinal study
Power analyses for the affected sib pair and the TDT design
Power and sample size calculation for survival analysis of
epidemiological studies
Power and Sample size based on two one-sided t-tests (TOST) for
(bio)equivalence studies
Partial and Semi-partial (Part) correlation
Predict protein-protein interactions based on functional and
topological similarities
PPM-LASSO: Point process models with LASSO penalties
web tool for estimating under-five deaths caused by poor-quality
antimalarials in sub-Saharan Africa
Functions for clustering of presence-absence, abundance and
multilocus genetic data
Tools for Designing and Weighting Survey Samples
Provides a pragma / directive / keyword syntax for R
Kvantitatiivsete meetodite praktikumi asjad / Functions used in
the course "Quantitative methods in behavioural sciences"
(SHPH.00.004), University of Tartu
Predictive Inference on Totals and Averages of Finite
Populations Segmented in Planned and Unplanned Domains
Prediction Intervals for Three Basic Statistical Models
Calculate Predicted Means for Linear Models
Classification rule based on Bayesian mixture models with
feature selection bias corrected
Utilities to fit paired comparison models for preferences
Dirichlet Process Bayesian Clustering, Profile Regression
Probability scale residuals and residual correlations
Pretty, Human Readable Formatting of Quantities
Estimating regional trends of a prevalence from a DHS
Functions and data for A Primer of Ecology with R
Fits a Principal Curve in Arbitrary Dimension
Finding and plotting simple basis vectors for multivariate data
Protocol Inspection and State Machine Analysis
Estimation of Prevalence Ratios using Logistic Models
Elementary Probability on Finite Sample Spaces
Probabilistic weather forecast using the GOP method
probsvm: Class probability estimation for Support Vector
Machines
Product Density Estimation for ICA using tilted Gaussian density
estimates
Product-limit estimation. Kaplan-Meier and Aalen-Johansson
method for censored event history (survival) analysis
The package can prioritize candidate disease metabolites based
on global functional relationships between metabolites in the
context of metabolic pathways
Profile Likelihood for a Parameter in Commonly Used Statistical
Models
Tools for profiling inference functions for various model
classes
Profile Analysis of Multivariate Data in R
An alternative display for profiling information
support package for "Programming Graphical User Interfaces in R"
Prognostic ROC curves for evaluating the predictive capacity of
a binary test
A simple interface to the PROJ.4 cartographic projections
library
Automates the creation of new statistical analysis projects
Various confidence interval methods for proportions
Feature (gene) selection based on the Proportional Overlapping
Scores
Propensity score methods for assigning treatment in randomized
trials
Miscellaneous functions for processing and sample selection of
vis-NIR diffuse reflectance data
Optimization of a multi-stage proteomic study
Protein (identification and) quantification based on peptide
evidence
Generating Various Numerical Representation Schemes of Protein
Sequence
Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics
Test of periodicity using response surface regression
Bootstrapping for Propensity Score Analysis
Penalized semi-parametric Bayesian Cox (PSBC) models with
shrinkage and grouping priors
Analysis of Parent-Specific DNA Copy Numbers
Political Science Computational Laboratory, Stanford University
Adaptive, sine-multitaper power spectral density estimation
A package to download regularly maintained political science
data sets and make commonly used, but infrequently updated
variables based on this data
Parameter space exploration with Latin Hypercubes
Projected Spatial Gaussian Process (psgp) methods
Build panel data sets from PSID raw data
Non-Linear Mixed-Effects modelling using Stochastic Differential
Equations
Population structure inference using mixture model
Probabilistic Suffix Trees and Variable Length Markov Chains
Simulations of grouped responses relative to baseline
Procedures for Psychological, Psychometric, and Personality
Research
Recursive Partitioning Based on Psychometric Models
Functions for analyzing psychophysical data in R
Produce well-formatted tables for psychological research
Computational models for prospect theory and other theories of
risky decision making
Performs simulation study to look for publication bias, using a
technique described by Ioannidis and Trikalinos; Clin Trials.
2007;4(3):245-53
Bayesian Estimation of Tumor Purity and Clonality
Population Viability Analysis with Data Cloning
Hierarchical Clustering with P-Values via Multiscale Bootstrap
Resampling
Computes phylogenetic eigenvectors regression (PVR) and
phylogenetic signal-representation curve (PSR) (with null and
Brownian expectations)
An R package to interact with the Project Vote Smart API for
scientific research
Penn World Table (Versions 5.6, 6.x, 7.x)
A Package for Qualitative Comparative Analysis
Yet another package for Qualitative Comparative Analysis
Quality Control of Genome Wide Association Study results
Bridging the Gap Between Qualitative Data and Quantitative
Analysis
Dictionaries and word lists for the qdap package
Regular Expression Removal, Extraction, and Replacement Tools
Tools for Quantitative Genetics Data Analyses
Utility sparse matrix functions for Quantitative Language
Comparison
Statistical transformations for post-processing climate model
output
Analysis of subjective perspectives using Q methodology
Analysis of Health-Related Quality of Life in oncology
q-order partial correlation graph search algorithm
Modelling and analysis of real-time PCR data
Simultaneous simulation of Q and R mode factor analyses with
Spatial data
Provides R-language Code to Examine Quantitative Risk Management
Concepts
Quantitative Structure Activity Relationship (QSAR) Data Sets
Tools for mapping multiple complex traits
Tools for mapping of quantitative traits of genetically related
individuals and calculating identity coefficients from a
pedigree
Exact permutation moments of quadratic form statistics
Functions to solve Quadratic Programming Problems
Sparsity by Worst-Case Quadratic Penalties
Causal Inference with Qualitative and Ordinal Information on
Outcomes
Quantitative chemical analysis: calibration and evaluation of
results
Estimation of conditional quantiles using optimal quantization
Quantile-based Spectral Analysis of Time Series
Analyzing RNA sequence count tables using quasi-likelihood
Functions to make surveys processing easier
Analysis of Queueing Networks and Models
Regularized sparse inverse covariance matrix estimation
Summary charts of micro satellite profiles for a set of
biological samples
Variables Selection for Clustering and Classification
Quasi variances for factor effects in statistical models
Generalized Eigenvalues and QZ Decomposition
Estimation of R0 and real-time reproduction number from
epidemics
Compressive Sampling: Sparse signal recovery utilities
Estimate Structured Additive Regression Models with BayesX
Bivariate (Two-Dimensional) Confidence Region and Frequency
Distribution
Converting R CRAN outputs into Google Earth
Simple R Interface to Microsoft PowerPoint using rcom or
RDCOMClient
A GTK GUI for fitting and comparing GLM and GLMM in R
r2stl, R package for visualizing data using a 3D printer
Running WinBUGS and OpenBUGS from R / S-PLUS
Racing methods for the selection of the best
R Package for Phylogenetic Analysis of RADseq Data
Tools for plotting skew-T diagrams and wind profiles
Ridge Estimation of Precision Matrices from High-Dimensional
Data
Data fusion filters for Attitude Heading Reference System (AHRS)
with several variants of the Kalman filter and the Mahoney and
Madgwick filters
Rainbow plots, bagplots and boxplots for functional data
Obtain and Analyze Rainfall Data from the Climate Prediction
Center
Rainfall Frequency (Design Storm) Estimates from the US National
Weather Service
Retrieves altmerics data for any published paper from
altmetrics.com
Structural Equation Modeling using the reticular action model
(RAM) Notation
Bayesian Geostatistical Modeling with RAMPS
Random number generator based on AES cipher
Simulation and Analysis of Random Fields
Breiman and Cutler's random forests for classification and
regression
Random Forests for Survival, Regression and Classification
(RF-SRC)
Function to create a random list for crossover studies
Random name generating function and data set
A Parallel Analysis With Polychoric Correlation Matrices
Random Uniform Forests for Classification and Regression
toolbox for pseudo and quasi random number generation and RNG
tests
A platform for the study of macroecology of life history traits
Model-based clustering for multivariate partial ranking data
Ranking Responses in a Single Response Question or a Multiple
Response Question
Fast Nearest Neighbour Search (wraps Arya and Mount's ANN
library)
RAPIDR: Reliable Accurate Prenatal non-Invasive Diagnosis R
package
Interfaces to Linux and AppArmor security methods
Application directories: determine where to save data, caches
and logs
Miscellaneous (stats) helper functions with sane defaults for
reporting
Functions to import data from Arc/Info V7.x binary coverages
Testing Gene-Environment Interaction for Rare Genetic Variants
Ecological and biogeographical null model tests for comparing
rarefaction curves
Calculation of rarity indices for species and assemblages of
species
R wrapper of ARPACK for large scale eigenvalue/vector problems,
on both dense and sparse matrices
raster: Geographic data analysis and modeling
Visualization methods for the raster package
An index of inter-rater agreement among a set of raters
Graphical user interface for data mining in R
Parameter estimation for the averaging model of Information
Integration Theory
Interface to the bird-watching datasets at proyectoavis.com
Memory efficient handling of FASTA sequence files, a pure R
implementation
An R package for reading and writing BAM (Binary alignment)
files
The Beta Random Number and Dirichlet Random Vector Generating
Functions
R interface to the Biodiversity Heritage Library
RbioRXN - process Rhea, KEGG, MetaCyc, Unipathway biochemical
reaction data
Functions to interact with BioUML server
Handling Linear Gaussian Bayesian Networks
Perform Rosenbaum bounds sensitivity tests for matched and
unmatched data
Rbundler manages an application's dependencies systematically
and repeatedly
Fast and light-weight caching (memoization) of objects and
results to speed up computations
Calculation of the Integrated Flow of Particles between Polygons
Loglinear Models for Capture-Recapture Experiments
This package builds maps with a full cartographic layout
Large, sparse optimal matching with refined covariate balance
RCEIM - R Cross Entropy Inspired Method for Optimization
Microscopy Based Cytometry Data Analysis Package
Conjugate gradient minimization of nonlinear functions with box
constraints
Discrete Choice (Binary, Poisson and Ordered) Models with Random
Parameters
Reverse correlation image classification toolbox
RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather
GENeretor): a package to generate time series of climate
indices from RMAWGEN generations
R tools for integrating with the www.clinicalcodes.org
repository
Rcmdr Plug-In for Business and Customer Analytics
R Commander Plugin for (industrial) Design of Experiments
Plugin de R-Commander para el manual EACSPIR
Rcmdr Evidence Based Medicine Plug-In package
R Commander Plug-in for the EZR (Easy R) Package
An Rcmdr Plug-In for Kaplan-Meier Plots and Other Plots by Using
the ggplot2 Package
Graphical User Interface for Conducting Meta-Analyses in R
Adds menu items to produce mosaic plots and assoc plots to Rcmdr
R Commander Plug-In for Statistics at NMBU
Graphical POINT of view for questionnaire data Rcmdr Plug-In
Rcmdr Receiver Operator Characteristic Plug-In package
Tools for sampling in Official Statistical Surveys
Rcmdr plugin for designing and analyzing single-case experiments
R Commander Plug-in for the survival Package
Graphical Integrated Text Mining Solution
Tools for Manipulating and Summarizing CMIP5 Data
Interface to Colombos Compendia using the exposed REST API
Regions of common profiles modelling with mixtures-of-experts
Rcpp Integration for Armadillo Templated Linear Algebra Library
Rcpp bindings for the Boost Date_Time library
Examples using RcppClassic to interface R and C++
Global optimization by differential evolution in C++
Rcpp integration for the Eigen templated linear algebra library
Examples using Rcpp to interface R and C++
Rcpp integration for GNU GSL vectors and matrices
Seamless Interface to Octave -- and Matlab
An interruptible progress bar with OpenMP support for c++ in R
packages
Rcpp bindings for Redis using the hiredis library
Fast rolling functions through Rcpp and RcppArmadillo
Rcpp bindings for Sequential Monte Carlo
Rcpp integration of different Ziggurat Normal RNG
implementations
R interface to the CSDP semidefinite programming library
General network (HTTP/FTP/...) client interface for R
Convert Rd to roxygen documentation and utilities to improve
documentation
Shrunken Centroids Regularized Discriminant Analysis
Relevant Dimension Estimation (RDE) in Feature Spaces
R interface to the dieharder RNG test suite
Importing real-time thermo cycler (qPCR) data from RDML format
files
R Bindings for the Discourse Network Analyzer
Update and manipulate Rd documentation objects
Robust data-driven statistical inference in
Regression-Discontinuity designs
An R wrapper for the Data Science Toolkit API
The rDVR package allows you to start stop and save a video
server from within R
Reactive transport modelling in 1D, 2D and 3D
Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG)
Reads mass spectrometry data in Bruker *flex format
A suite of functions to flexibly read data from files
Reading machine learning benchmark data sets from different
sources in their original format
Reads Mass Spectrometry Data in mzXML Format
Read ODS files and puts them into data frames
Empirical Bayes Estimation and Inference in R
Relevant Component Analysis for Supervised Distance Metric
Learning
Access U.S. Federal Government Recall Data
Simulation of Rare Events Case-Control Studies
Redundancy Control in Pathways databases
Ordination methods for the analysis of beta-diversity indices
Lab for Developing and Testing Recommender Algorithms
Book-Crossing Dataset (BX) for recommenderlab
Recommender System using Matrix Factorization
Robust and Efficient Analysis using Control function approach,
of a Secondary Outcome
Companion Package to the Book “R: Einführung durch angewandte
Statistik”
Regression Trees with Random Effects for Longitudinal (Panel)
Data
EWAS using reference-Free DNA methylation mixture deconvolution
Gene And Splice Site Annotation Using Annotation Data From
Ensembl And UCSC Genome Browsers
Straightforward BibTeX and BibLaTeX Bibliography Management
Wavelet-Domain Regression with Functional Data
Cluster analysis via regression coefficients
Gaussian linear models with linear covariance structure
Random Subspace Method (RSM) for linear regression
Detect and Test Regular Sequences and Subsequences
Searching for footprints of selection using Haplotype
Homozygosity based tests
Item Analysis Package with Standard Errors
Relative importance of regressors in linear models
Data Structures and Algorithms for Relations
relax -- R Editor for Literate Analysis and lateX
Relaxation of glmnet models (as in relaxed lasso, Meinshausen
2007)
Functions for estimating parameters in software reliability
models
Tools for structural reliability analysis
Package for some probability distributions
Relative Contribution of Effects in a Regression Model
Extensible Markov Model (EMM) for Data Stream Clustering in R
Regularized Multivariate Regression for Identifying Master
Predictors
Empirical Orthogonal Teleconnections in R
Renewal method for extreme values extrapolation
Reordering the dendrogram according to the class labels
Global tests for expression data of high-dimensional sets of
molecular features
Replicability Analysis for Multiple Studies of High Dimension
A collection of miscellaneous tools for reproducible research
with R
Repeated measures proportional odds logistic regression
Microsoft Word, Microsoft Powerpoint and HTML documents
generation from R
External jars required for package ReporteRs
A general message and error reporting system
Tools for automatically generating reproducible clinical report
An R package to assist in the workflow of writing academic
articles and other reports
Generate LaTeX tables of descriptive statistics
R interface to EPP-lab, a Java program for exploratory
projection pursuit
Renewable Energy Probability Resource Assessment Tool (REPRA)
Determine the representativity of two multidimensional data sets
Regression and similarity evaluation for memory-based learning
in spectral chemometrics
Flexibly reshape data: a reboot of the reshape package
A GUI for the reshape2 and plyr packages
electrical properties of resistor networks
Resource Selection (Probability) Functions for Use-Availability
Data
Revealed preferences and microeconomic rationality
R wrappers for EXPOKIT; other matrix functions
Get Seismic Data from the International Federation of Digital
Seismograph Networks
Rapid Feasible Generalized Least Squares
Easy handling of and access to files organized in structured
directories
Varying stimulus coefficient fMRI models in R
Graphics for Spherical Distributions and Earthquake Focal
Mechanisms
RForcecom provides the connection to Force.com and
Salesforce.com from R
Code examples to accompany the book "R for Dummies"
BATWING for calculating forensic trace-suspect match
probabilities
Estimate Permutation p-values for Random Forest Importance
Metrics
Gabriel Multiple Comparison Test and Plot the Confidence
Interval on Barplot
Gamma convolutions for methylation array background correction
Interface to the Global Biodiversity Information Facility API
Gaussian, Poisson, and Binomial Hierarchical Modeling
RGCCA and Sparse GCCA for multi-block data analysis
Bindings for the Geospatial Data Abstraction Library
RGENERATE A tool for generation random variable time series
using the tools of 'vars' or 'RMAWGEN'
R version of GENetic Optimization Using Derivatives
Interface to Geometry Engine - Open Source (GEOS)
UI for the RGP genetic programming framework
The GSC Applied Geochemistry EDA Package
Data and Functions from the book R Graphics, Second Edition
Functions to make R usage in social sciences easier (in french)
Data frame editor and dialog making wrapper for RGtk2
Retrieve data sets from the HealthData.gov data API
Calculating multilocus heterozygosity and
heterozygosity-heterozygosity correlation
Side effect risks in hospital : simulation and estimation
An R package for High-Performance Computing
Control the number of threads on BLAS for R
Heart rate variability analysis of ECG data
Regularized Hotelling's T-square Test for Pathway (Gene Set)
Analysis
Methods for accessing huge amounts of data [DEPRECATED]
ri: R package for performing randomization-based inference for
experiments
Randomization inference for treatment effects on a binary
outcome
Computes and compares species richnesses
Ridge Regression with automatic selection of the penalty
parameter
R Package for Ridge Fusion in Statistical Learning
Ridit Analysis (An extension of the Kruskal-Wallis Test.)
Read ImageJ Region of Interest (ROI) files
Ring buffer (circular buffer) data structure
C++ classes to embed R in C++ applications
R Individual Specialization (RInSp) package
Riskset ROC curve estimation from censored survival data
Isothermal Titration Calorimetry (ITC) Data Analysis
In vitro in vivo correlation linear level A
Reversible Jump MCMC for the analysis of CGH arrays
Provides access to databases through the JDBC interface
R-interface to gene drop Java Programs for Statistical Genetics
and Computational Statistics (JPSGCS)
R interface of the Gateway to Advanced and User-friendly
Statistics Service
Serialize R objects to JSON, JavaScript Object Notation
Mann-Kendall test, Seasonal and Regional Kendall Tests
Data exchange between R and LabKey Server
Package for the analysis of lake physics
R interface to RNG with multiple streams
A set of tools for working with list objects
Rank-based Estimation and Prediction in Random Effects Nested
Models
Exact (Restricted) Likelihood Ratio tests for mixed and additive
models
Fit Multi-Modal Mallows' Models to ranking data
Continuous Optimization using Memetic Algorithms with Local
Search Chains (MA-LS-Chains) in R
Read and write of MAT files together with R-to-MATLAB
connectivity
RMAWGEN (R Multi-site Auto-regressive Weather GENerator), a
package to generate daily time series of precipitation and
temperature from monthly mean values
An R Package for Mediation Analysis Confidence Intervals
An individual-based population genetic simulation environment
Utility function for defining S3 methods
Simpler use of data mining methods (e.g. NN and SVM) in
classification and regression
Combining Mixture Components for Clustering
Connect R with MOA for Massive Online Analysis
Rounded Mixture Package. Performs probability mass function
estimation with Dirichlet process mixtures of rounded kernels
R MPFR - Multiple Precision Floating-Point Reliable
Interface (Wrapper) to MPI (Message-Passing Interface)
RMRAINGEN (R Multi-site RAINfall GENeretor): a package to
generate daily time series of rainfall from monthly mean values
Root-mean-square goodness-of-fit test for simple null hypothesis
Distributions, Statistics and Tests derived from Random Matrix
Theory
Wrapper for several R packages and scripts to automate RNA-seq
analysis
Using graphs as a navigational infrastructure
Some image data used in the RnavGraph package demos
EUtils libraries for use in the R environment
Obtain, organize, and visualize NCEP weather data
Provides an Interface to the Agent-Based Modelling Platform
NetLogo
Implement semantically rich I/O for NeXML format
Utility functions for working with Random Number Generators
toolbox for WELL random number generators
WELL19937a random number generator implemented with 53 bit
output
Rniftilib - R Interface to NIFTICLIB (V2.0.0: 2010-07-20)
Medical image registration using the NiftyReg library
An interface to the NOAA Operational Model Archive and
Distribution System
UK National River Flow Archive data from R
Robust Estimation for Compositional Data
Optimally robust influence curves and estimators for location
and scale
Infinitesimally robust estimators for preprocessing omics data
Robust periodogram methods for irregularly sampled time series
and robust periodicity detection methods
Optimally robust influence curves for regression and scale
Robust Regularized Singular Value Decomposition
Store your observations: R-Interface to the Observations Data
Model from QUASHI
Truncated Maximum Likelihood fit and Robust Accelerated Failure
Time regression for Gaussian and log-Weibull case
An Object Oriented Solution for Robust Factor Analysis
Robust Estimation for Generalized Additive Models
Robust methods for high-dimensional data
Robust estimation of the generalized log gamma model
Robust Estimation of Variance Component Models
eXperimental Functionality for Robust Statistics
Construction of diagnostic or prognostic scoring system and
internal validation of its discriminative capacities based on
ROC curve and 0.633+ boostrap resampling
RObust rank COrrelation COefficient and test
Visualizing the performance of scoring classifiers
Time-dependent ROC curve estimation and adaptation to the
relative survival context
Non-parametric estimation of ROC curves without Gold Standard
Test
Parameterized queries extension for RODBC
R object-oriented programming with or without references
Finds roots, extrema and inflection points of a curve
Nonlinear root finding, equilibrium and steady-state analysis of
ordinary differential equations
Optimally robust estimation - old version
Optimally robust estimation for regression-type models
OCI based Oracle database interface for R
Data Analysis Using Rough Set and Fuzzy Rough Set Theories
Royston's H Test: Multivariate Normality Test
Simple interactive controls for R using the tcltk library
Recursive Partitioning and Regression Trees
Plot rpart models.  An enhanced version of plot.rpart
Classification trees for ordinal responses
Tools for parsing and manipulating rpart objects, including
generating machine readable rules
RPCLR (Random-Penalized Conditional Logistic Regression)
Read, write, visualize and manipulate PDB files
Easy interface to advanced PostgreSQL features
R interface to PHAST software for comparative genomics
R interface to the iPlant Discovery Environment
Read and Analyze PLEXOS Solutions from R
Graphical User Interface (GUI) for interactive R analysis
sessions
R interface to the PostgreSQL database system
Reads, annotates, and normalizes reverse phase protein array
data
rpubchem - Interface to the PubChem Collection
R Interface to the Pushbullet Messaging Service
Ridge regression and other kernels for genomic selection
Re-parametrization of RR-BLUP to allow for a fixed residual
variance
Scalable Robust Estimators with High Breakdown Point
Robust multivariate Methods for High Dimensional Data
Scalable Robust Estimators with High Breakdown Point for
Incomplete Data
Generate Physical Random Numbers on Intel CPUs with the RdRand
instruction
Fitting distributions to given data or known quantiles
Robust Regularized Linear Discriminant Analysis
Correlation and Regression Analyses of Randomized Response
Designs
Dynamic generation of scientific reports
Data related to the book "R Statistical Application Development
by Example"
SAGA Geoprocessing and Terrain Analysis in R
An R Package for Stepwise Cluster Analysis
statconn: provides portable C-style interface to R
(StatConnector)
Ray Shooting Depth (i.e. RS Depth) functions for bivariate
analysis
Tools for reading SDMX data and metadata
Estimating the proportion of genetically modified stacked seeds
in seedlots via multinomial group testing
Robust Structural Equation Modeling with Missing Data and
Auxiliary Variables
Gini methodology-based correlation and clustering analysis of
microarray and RNA-Seq gene expression data
Functions for Hierarchical Bayesian Estimation: A Flexible
Approach
Siena - Simulation Investigation for Empirical Network Analysis
Robust Signature Selection for Survival Outcomes
Neural Networks in R using the Stuttgart Neural Network
Simulator (SNNS)
Get SNP (Single-Nucleotide Polymorphism) data on the web
Download Socrata datasets as R data frames
Port of sofia-ml (http://code.google.com/p/sofia-ml/) to R
Adapt numerical records to fit (in)equality restrictions with
the Successive Projection Algorithm
Package for converting between attitude representations: DCM,
Euler angles, Quaternions, and Euler vectors
R interface to SPRNG (Scalable Parallel Random Number
Generators)
Math and String Extension Functions for RSQLite
A collection of methods for singular spectrum analysis
Random orthonormal matrix generation on the Stiefel manifold
Simulate and Develop Streaming Processing in [R]
Suite of Nonlinear Differential Algebraic Equations Solvers in R
An R SVG graphics device with dynamic tips and hyperlinks
R interface to SymPy computer algebra system
Manage and manipulate large collections of R objects stored as
tape-like files
Tools for analyzing sales report files of iTunes Connect
Tools for tensor analysis and decomposition
Automatic Text Classification via Supervised Learning
Functions for calculation of texture metrics for Grey Level
Co-occurrence Matrices
R Transcription Factor Binding Site identification tool
Interpolation of data with variable spatial support
Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
T-distributed Stochastic Neighbor Embedding using Barnes-Hut
implementation
Implementation of Unobserved Components Model (UCM) in R
Runiversal - Package for converting R objects to Java variables
and XML
Interface utilities, parallel computing methods and additional
distributions for MCMC models in JAGS
R interface to the UNU.RAN random variate generators
A GUI for the UNU.RAN random variate generators
Diverse basic statistical and graphical functions
Computation of r-values for ranking in high-dimensional
settings
Manipulations of triangular meshes (smoothing, quadric edge
collapse decimation, im- and export of various mesh
file-formats, cleaning, etc.) based on the VCGLIB API
Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators
Calling haplotype-based and variant-based pedigree
disequilibrium test for rare variants in pedigrees
Variable metric nonlinear function minimization with bounds
constraints
population control weighted rare-variants TDT
A package for accessing World Bank climate data
Detects spatial outliers using a Random Walk on Bipartite Graph
R wrapper around the Yahoo! Weather, Google Weather and NOAA
APIs
R x C Ecological Inference With Optional Incorporation of Survey
Information
Maximum Likelihood Shrinkage via Generalized Ridge or Least
Angle Regression
R interface to the yacas computer algebra system
R package provide functions to translate English words into
Chinese
Access to the YouTheria mammal trait database
Grain size analysis, textural classifications and distribution
of unconsolidated sediments
GUI Tool for Data Management like SPSS or Stata
R binding for zmq (http://www.zeromq.org/)
Set of common tools for model diagnostics
Biclustering via sparse singular value decomposition
incorporating stability selection
Detection of Fixations in Eye-Tracking Data
Maximum Likelihood Models for Species Abundance Distributions
Stochastic Approximation Expectation Maximization (SAEM)
algorithm
Small Area Estimation for Rao and Yu Model
A framework for comparing the performance of MCMC samplers
Sample size calculation for various t-Tests and Wilcoxon-Test
Sample size calculations for complex surveys
Sample size calculations for normal means
Calculating sample size requirements when estimating the
difference between two binomial proportions
Optimal stratification of sampling frames for multipurpose
sampling surveys
Sampling Surface Simulation for Areal Sampling Methods
SAM: Significance Analysis of Microarrays
Sensitivity Analysis of a Meta-analysis with Unpublished but
Registered Analytical Investigations
Statistical Analysis of Network Data with R
C/C++ source code to trigger Address and Undefined Behaviour
Sanitizers
Stratified Analysis with Nonparametric covariable adjustment
Spectral Analysis for Physical Applications
Significance Analysis of Prognostic Signatures
Import ASCII files directly into R using only a SAS input script
Data sets from "SAS System for Mixed Models"
Bayesian emulation, calibration and validation of computer
models
Small-Sample Adjustments for Wald tests Using Sandwich
Estimators
Semiparametric Bayesian Gaussian copula estimation and
imputation
sbioPN: Simulation of deterministic and stochastic spatial
biochemical reaction networks using Petri Nets
Detecting structural breaks using rectangle covering
(non-parametric method)
Compute scagnostics - scatterplot diagnostics
Shape-Constrained Additive Regression: a Maximum Likelihood
Approach
Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models
Simultaneous Confidence Bands for the Mean of Functional Data
Stellar CharactEristics Pisa Estimation gRid
Supervised Component Generalized Linear Regression (SCGLR)
Analyse citation data from Google Scholar
Functions and datasets for math used in school
Tools for analyzing factorial experiments
A package on the Schwartz two-factor commodity model
Standardized Climate Indices such as SPI, SRI or SPEI
Tools for analyzing political behaviour data
Scientific Graphing Functions for Factorial Designs
SCORER 2.0: an algorithm for distinguishing parallel dimeric and
trimeric coiled-coil sequences
Implements the Scout method for Covariance-Regularized
Regression
Tools for Scraping Data from HTML and XML Documents
Screen and clean variable selection procedures
Analysis of High-Dimensional Categorical Data such as SNP Data
Transcript-based unit tests that are easy to create and maintain
Scuba diving calculations and decompression models
Shrinkage Discriminant Analysis and CAT Score Variable Selection
Calculate the third-order accurate Unbiased P-values via Speedy
double bootstrap method
Statistical Disclosure Control methods for anonymization of
microdata and risk estimation
Graphical user interface for package sdcMicro
Methods for statistical disclosure control in tabular data
Synthesizing List of Differentially Expressed Features
Species Distribution Modelling Tools: Tools for processing data
associated with species distribution modelling exercises
Create virtual species for species distribution modelling
Soft Discretization-based Bayesian Network Inference
Measures of Risk for the Compound Poisson Risk Process with
Diffusion
Scenario Discovery Tools to Support Robust Decision Making
Seasonal analysis and graphics, especially for climatology
Statistical Estimation of Cluster Parameters (SECP)
Sampling Design for Spatially Explicit Capture--Recapture
Simulation of Evolutionary and Epidemiological Dynamics
Statistics for Environmental Sciences, Engineering, and
Geography
Simulation of Ecological and Environmental Models
reading and writing SEER*STAT data files
A set of tools for measuring spatial segregation
Segmented relationships in regression models with
breakpoints/changepoints estimation
Standard errors of estimated genetic parametes
KoNLP static dictionaries and Sejong project resources
A tool for calculation and optimization of the expected gain
from multi-stage selection
Estimation of Weight Functions in Meta Analysis
Translate CSS Selectors to XPath Expressions
Regularization for variable selection in model-based clustering
and discriminant analysis
Goodness-of-fit indexes for structural equation models
Parametric and semi-parametric analyses of semi-competing risks
data
Identifiability of linear structural equation models
Semiparametric Sample Selection Modelling with Continuous
Response
Kernel PCA projection, and semi-supervised variant
Path diagrams and visual analysis of various SEM packages'
output
Structural Equation Modeling Using Partial Least Squares
Useful tools for structural equation modeling
Tool for sending interactive plots with tool-tip content
Sensitivity Analysis for Case-Control Studies
Sensitivity Analysis in Observational Studies
Sensitivity analysis using weighted M-statistics
Simultaneous Model-Based Clustering and Imputation via a
Progressive Expectation-Maximization (PEM) algorithm
Thurstonian models for sensory discrimination
Simulation and group sequential monitoring of randomized
multi-arm two-stage Phase IIb/III treatment efficacy trials
with time-to-event endpoints
Calculates possible epitopes and co-mutations
Simple GUI for graph based visualization of cluster of DNA
sequence reads
Biological Sequences Retrieval and Analysis
An R package for meta-analyzing region-based tests of rare DNA
variants
Efficiently Read Sequence Data (VCF format, BCF format and METAL
format) into R
Sequential Monitoring of Clinical Trials
Generates a permutation matrix based upon a sequence
Simulation and visualization of restriction enzyme cutting
pattern from DNA sequences
Exact Sequential Analysis for Poisson Data
Copy number estimation from tumor genome sequencing data
Spatially explicit structural equation modeling
Computation and visualization of socioeconomic indices and
categories distributions
Functions for interacting with, saving and restoring R sessions
SetMethods: A Package Companion to "Set-Theoretic Methods for
the Social Sciences"
Set (Normal) Random Number Generator and Seed
Sets, Generalized Sets, Customizable Sets and Intervals
Set the value of options("width") on terminal emulators
Calculates the historic date of extinction given a series of
sighting events
Utilities from Seminar fuer Statistik ETH Zurich
Functions for Systems Factorial Technology Analysis of Data
Spatial Graph based Clustering Summaries for spatial point
patterns
An Object-oriented Framework for Geostatistical Modeling in S+
Fit a GLM (or cox model) with a combination of lasso and group
lasso regularization
An R package for power and boundary calculations in
pre-licensure vaccine trials using a sequential generalized
likelihood ratio test
An R Package for the Calculation and Visualization of Student
Growth Percentiles & Percentile Growth Trajectories
Sparse Generalized Principal Component Analysis
Functions for plotting graphical shapes, colors
Statistical significance of Sharpe ratio
Models and Data Sets for the Study of Species-Area Relationships
A server-side file system viewer for shiny
SHrinkage covariance Incorporating Prior knowledge
Enable (any) R Graphics Device to Show Text Using System Fonts
Convert a SpatialLinesDataFrame object to a "igraph-class"
object
Global, Parameterwise and Joint Post-Estimation Shrinkage
The shuffle estimator for explainable variance
SIDIER: Substitution and Indel Distances to Infer Evolutionary
Relationships
Identify and visualize significantly responsive branches in a
phylogenetic tree
Calculate ANSI S3.5-1997 Speech Intelligibility Index
A Collection of functions for similarity analysis of vegetation
data
Simultaneous inference for diversity indices
Simultaneous Comparisons for Multiple Endpoints
Safe implementation of Monte Carlo tests
Simulation of ecological (and other) dynamic systems
SIMEX- and MCSIMEX-Algorithm for measurement error models
Subnetwork Integration for Multi-Modal Signatures
Simulation of event histories based on nonlinear hazard rate
functions and potentially nonlinear covariate effects
Statistical Inference for MOdular NEtworks (SIMoNe)
Tools for Simulating and Plotting Quantities of Interest
Estimated From Cox Proportional Hazards Models
Bayesian Inference and Sensitivity Analysis for Causal Effects
from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured
Confounding
Regression Analysis of Proportional Data Using Simplex
Distribution
Numerical integration of functions over simplices
Simulations to predict the number of loci expected in RAD and
GBS approaches
Tools for Simulation Studies in Parallel with R
Nonparametric Simulation of RNA-Seq Data
An easy to learn framework to conduct simulation studies which
disengages the researcher from administrative source code
Simulation process of 4 selection methods in predicting chemical
potent compounds
A SINful Approach to Selection of Gaussian Graphical Markov
Models
Estimate sparse dynamic graphs using the Smooth Incremental
Graphical Lasso Estimation (SINGLE) algorithm
Functions for calculating daily solar radiation and
evapotranspiration
Supplementary Item Response Theory Models
Format a number to a string with SI prefix
Six Sigma Tools for Quality and Process Improvement
sjPlot - data visualization for statistics in social science
SNP-set (Sequence) Kernel Association Test
Efficient meta analysis for the SKAT test
Sparse (Multicategory) Kernel Discriminant Analysis
The Skew Hyperbolic Student t-Distribution
The Skillings-Mack test Statistic for block designs with missing
observations
Send messages, images, R objects and files to Slack.com
channels/users
Estimation and Use of the Quantile-Based Skew Logistic
Distribution
Data sets from Ramsey and Schafer's "Statistical Sleuth (2nd
ed)"
Data sets from Ramsey and Schafer's "Statistical Sleuth (3rd
ed)"
Tools for fitting sparse latent factor model
Maximin-Distance (Sliced) Latin Hypercube Designs
Discrete Prolate Spheroidal (Slepian) Sequence Regression
Smoothers
Smoothing methods for nonparametric regression and density
estimation
Statistical Modeling of Animal Movements
Sparse Multivariate Analysis via Rank Transformation
A set of tools developed by the Foundation SmarterPoland.pl
(Standardised) Major Axis Estimation and Testing Routines
A simple Monte Carlo optimizer using adaptive coordinate
sampling
Smoothed minimax concave penalization (SMCP) method for
genome-wide association studies
Data Sets for Statistical Methods in Customer Relationship
Management by Kumar and Petersen (2012)
Utility functions for sequential Monte Carlo
Data to accompany Smithson & Merkle, 2013
R functions and data from Chapter 5 of 'Statistical Methods for
Financial Engineering'
SMfSB 2e: Stochastic Modelling for Systems Biology, second
edition
Provides two taxonomic coefficients from E. S. Smirnov
"Taxonomic analysis" (1969) book
Fitting univariate censored regression model under the scale
mixture of normal distributions
Fitting illness-death model for interval-censored data
Smooth Hazard Ratio Curves taking a Reference Value
Smoothed M-estimators for 1-dimensional location
Survival Regression with Smoothed Error Distribution
Smooth Estimation of GPD Shape Parameter
Practicals for use with Davison (2003) Statistical Models
Datasets for Agresti and Finlay's "Statistical Methods for the
Social Sciences"
The skew-normal and skew-t distributions
Gadget N-body cosmological simulation code snapshot I/O
utilities
Snipping methods for robust estimation and clustering
Snowball stemmers based on the C libstemmer UTF-8 library
Easier cluster computing (based on snow)
Fault Tolerant Simple Network of Workstations
SNPs-based whole genome association studies
Maximally selected statistics for SNP data
A bivariate Gaussian genotype clustering and calling algorithm
for Illumina microarrays
Flexible writing of snpStats objects to flat files
Accessing, subsetting and plotting mouse SNPs
Standard and Nonstandard Statistical Models and Methods for Test
Equating
Memory management in R by delayed assignments
Specific correspondence analysis for the social sciences
Generates social networks based on distance
Functions and Examples for "Software for Data Analysis"
Optimal Discriminant Clustering(ODC) and Sparse Optimal
Discriminant Clustering(SODC)
matrix completion via iterative soft-thresholded svd
A package to consistently represent soil properties along a soil
profile
Models of Soil Organic Matter Decomposition
Soil spectral file conversion, data exploration and regression
functions
Functions for soil texture plot, classification and
transformation
soilwater: Implements parametric formulas for soil water
retention or conductivity curve
General-purpose optimisation with the Self-Organising Migrating
Algorithm
Controlling the Generalized Familywise Error Rate
Estimating Abundance of Clones from DNA fragmentation data
Single Objective Optimization Benchmark Functions
Estimation using Sequential Offsetted Regression
Turns a data frame into an HTML file containing a sortable
table
An R client for the OGC Sensor Observation Service
Design and Simulation of seamless Phase II-III Clinical Trials
Implements The Sequential Predictions Algorithm
SPA3G: R package for the method of Li and Cui (2012)
A Program to Estimate Animal Abundance and Density using
Bayesian Spatially-Explicit Capture-Recapture Models
Sparse conditional graph estimation with joint additive models
classes and methods for spatio-temporal data
Spatial and Phylogenetic Analysis of Community Diversity
Spatially weighted context data for multilevel modelling
Mixed Models, Particularly Spatial GLMMs
Perform rare variants association analysis based on summation of
partition approaches
Perform sparse hierarchical clustering and sparse k-means
clustering
Sparklines and graphical tables for tex and html
The sparr package: SPAtial Relative Risk
Sparse biclustering of transposable data
Sparse and Regularized Discriminant Analysis
Numerical estimation of sparse Hessians using ACM TOMS Algorithm
636
RcppEigen back end for sparse least trimmed squares regression
Multivariate normal functions for sparse covariate and precision
matrices
Fit sparse linear regression models via nonconvex optimization
Sparse-aware Maximum Likelihood for Structural Equation Models
Sparse time series chain graphical models
Spartan (Simulation Parameter Analysis R Toolkit ApplicatioN)
Spatio-temporal modeling of large data using a spectral SPDE
approach
Functions for Kriging and Point Pattern Analysis
Computation of spatial covariance matrices for data on
rectangles
Methods and Data for Spatial Epidemiology
Hierarchical spatial generalized extreme value (GEV) modeling
with Bayesian Model Averaging (BMA)
Nonparameteric estimation of spatial segregation in a
multivariate point process
Performs spatial NBDA in a Bayesian context
Multivariate nonparametric methods based on spatial signs and
ranks
Segregation measures for multitype spatial point patterns
Estimation of spatial tail dependence models
R functions for working with spatial data
Spatial Point Pattern analysis, model-fitting, simulation, tests
Bayesian spatial survival analysis with parametric proportional
hazards models
Univariate and Multivariate Spatial-temporal Modeling
Spatial Copula Modelling to Bayesian Survival Analysis
Statistical Process Control -- Collection of Some Useful
Functions
Functions for calibrating control charts
Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Sparse Estimation of a Covariance Matrix
Spatial dependence: weighting schemes, statistics and models
Spatio-dynamic wetland plant communities model
Alternative spectral clustering, with automatic estimation of k
Statistical package for species richness estimation
Specificity of personality trait-outcome (or trait-trait)
associations
Forecast verification routines for the SPECS FP7 project
Approximate Gaussian processes using the Fourier basis
Singular Spectrum Analysis (SSA) tools for time series analysis
Fitting Linear and Generalized Linear Models to large data sets
Semiparametric efficient estimation for a two-sample treatment
effect
Calculation of the Standardised Precipitation-Evapotranspiration
Index
Auxiliary functions to estimate centers of biodiversity
Spatial Error Estimation and Variable Importance
Spatial Stochastic Frontier models estimation
Interface between GRASS 6+ geographical information system and R
Numerical integration over spheres and balls in n-dimensions;
multivariate polar coordinates
Spherical Wavelets and SW-based Spatially Adaptive Methods
Estimation of spatial autoregressive models with and without
heteroskedastic innovations
A genetic-based assay for the identification of cell lines
Prediction and variable selection using spike and slab
regression
Bayesian variable selection and model choice for generalized
additive mixed models
Spatial and Space-Time Point Pattern Analysis
Stack and Reshape Datasets After Splitting Concatenated Values
Econometric Models for Spatial Panel Data
Sparse Partial Least Squares (SPLS) Regression and
Classification
Semiparametric Maximum likelihood Method for interactions
gene-environment in case-mother control-mother designs
R interface to many species occurrence data sources
Semiparametric proportional odds rate model
Statistical Package for Reliability Data Analysis
Site Percolation on Square Lattice (SPSL)
spsmooth: An Extension Package for 'mgcv'
Spatio-Temporal Bayesian Modelling Using R
Functions and Datasets for "Introduction to Scientific
Programming and Simulation Using R"
Squared extrapolation methods for accelerating fixed-point
iterations
Color-based plots for multivariate visualization
Nonparametric Smooth ROC Curves for Continuous Data
The Stepwise Response Refinement Screener (SRRS)
Fisheries stock assessment simulation testing with Stock
Synthesis
Sample Size Adjusted for Nonadherence or Variability of input
parameters
Fitting of parametric models using summary statistics
Local and remote system commands with output and error capture
Sample Size Calculations for Microarray Experiments
Robust estimation and inference in sample selection models
Tools for importing files in the triple-s .(Standard Survey
Structure) format
Fitting Semi-parametric Symmetric Regression Models
data analysis of drug stability for shelf life estimation
Estimate the 4 parameters of stable law using different methods
Stylized concatenation of data.frames or ffdfs
Statistical Analysis of Mixed Ploidy Populations
LaTeX/HTML code and ASCII text for well-formatted regression and
summary statistics tables
Secondary Trait Association analysis for Rare variants via
SEQuence data
Tools Inspired by Stata to Clean, Explore and Join Datasets
Statistical Analysis for Environmental Data
implementation of the StatDataML proposal
statebins is an alternative to choropleth maps for USA States
Software tools for the Statistical Analysis of Network Data
Common R Scripts and Utilities Used by the Statnet Project
Software
Statistical Rank Aggregation: Inference, Evaluation, and
Visualization
Testing Steepness of Dominance Hierarchies
Subpopulation Treatment Effect Pattern Plot (STEPP)
L2 penalized logistic regression with a stepwise variable
selection
Stepwise detection of recombination breakpoints
Stereo Camera Calibration and Reconstruction
Separable Gaussian Process Interpolation (Emulation)
Simultaneous Threshold Interaction Modeling Algorithm
Stineman, a consistently well behaved method of interpolation
Estimation of the Structural Topic Model
Plots a QQ-Norm Plot with several Gaussian simulations
Fit a spatial occupancy model via Gibbs sampling
Stochastic Profiling using Maximum Likelihood Estimation
Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Build stock models and analyze stock portfolios
R Functions for Solving Stoichiometric Equations
Write Storm Bolts in R using the Storm Multi-Language Protocol
Stochastic Simulator for Reliability Modeling of Repairable
Systems
Selection of Training Populations by Genetic Algorithm
Space-Time Point Pattern simulation, visualisation and analysis
Perform residual analysis on space-time point process models
Stratigraphic Tree Analysis for Palaeontology
Univariate Stratification of Survey Populations
Toolkit for the plotting and analysis of stratigraphic and
palaeontological data
Stream Metabolism-A package for calculating single station
metabolism from diurnal Oxygen curves
Functions to help the process of learning structural equation
modelling
Fetch and plot financial stress index and component data
Computation and estimation of reliability of stress-strength
models
Approximate string matching and string distance functions
Testing, Monitoring, and Dating Structural Changes
Multiple Testing for Hypotheses with Hierarchical or Group
Structure
STRUctural Modeling of Latent Variables for General Pedigree
Process Control And Internal Validation Of Forensic STR Kits
Class and Methods for Structural Time Series Models
Functions for a variety of stylometric analyses
Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures
Methods for exploring treatment effect heterogeneity in subgroup
analysis of clinical trials
Gene selection using Lasso for Microarray data with user-defined
genes fixed in model
Computes copula using ranks and subsampling
An Ensemble Method for Combining Subset-Specific Algorithm Fits
Cluster analysis to find molecular subtypes and their assessment
Dataframe Summaries, Frequency Tables and Numerical Summaries
with Customizable Output
Supervised Clustering of Predictor Variables such as Genes
Generating Robust Biclusters from a Bicluster Set (Ensemble
Biclustering)
R Code for Testing Markov Chain Nonconvergence
Implements the supervised multidimensional scaling (superMDS)
proposal of Witten and Tibshirani (2011)
Basic functions for supporting an implementation of best-worst
scaling
Basic functions for supporting an implementation of choice
experiments
Fitting Hansen Models to Investigate Convergent Evolution
Evaluation of surrogate endpoints in clinical trials
LaTeX descriptive statistic reporting for survey data
Inference for model-free between-group parameters for censored
survival data
Estimate accuracy measures for risk prediction markers from
survival data
Estimators of prediction accuracy for time-to-event data
C-statistics for risk prediction models with censored survival
data
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
The Gini concentration test for survival data
IDI and NRI for comparing competing risk prediction models with
censored survival data
Penalised Maximum Likelihood for Survival Analysis Models
Time-dependent ROC curve estimation from censored survival data
Miscellaneous functions for survival data
Presmoothed Estimation in Survival Analysis
Survival analysis for recurrent event data
Weibull Regression for a Right-Censored Endpoint with
Interval-Censored Covariate
Power and Sample Size Calculations for SNP Association Studies
with Censored Time to Event Outcomes
Surrogate variable analysis using partial least squares in a
gene expression study
2d and 3d Space-Varying Coefficient Models
Interfaces to various state-of-art SVD and eigensolvers
SciViews GUI API - Dialog boxes using Tcl/Tk
SciViews GUI API - Functions to manage GUIs
SciViews GUI API - IDE and code editor functions
SciViews GUI API - Functions to interface with Komodo Edit/IDE
SciViews GUI API - Miscellaneous functions
SciViews GUI API - Tools (wrapper for packages tools and
codetools)
Nomograms for Right-Censored Outcomes from Survey Designs
A package for complex surveys including plausible values
Visualization, analysis and adjustment of high-dimensional data
in respect to sample annotations
A multi-OS implementation of the TAMU SWAT model
Utilities for Sweave together with TeX listings package
Miscellaneous Functions for Southwest Fisheries Science Center
Air Quality Data of Switzerland for one year in 30 min
Resolution
Switching nonparametric regression models for a single curve and
functional data
sybil - Efficient Constrained Based Modelling in R
Cost Constrained FLux Balance Analysis: MetabOlic Modeling with
ENzyme kineTics (MOMENT)
cycle-Free Flux balance analysis: Efficient removal of
thermodynamically infeasible cycles from metabolic flux
distributions
Dynamic FBA : dynamic flux balance analysis
Using gene expression data to improve flux balance analysis
predictions
Symbolic central and noncentral moments of the multivariate
normal distribution
Framework for the analysis of genomic prediction data using R
Methods for computing spatial, temporal, and spatiotemporal
statistics
SYNCSA - Analysis of functional and phylogenetic patterns in
metacommunities
Interface to The Synergizer service for translating between sets
of biological identifiers
Inference and Analysis of Sympatry Networks
Synthetic Likelihood methods for intractable likelihoods
Synthetic Control Group Method for Comparative Case Studies
Generating synthetic versions of sensitive microdata for
statistical disclosure control
Estimating Systems of Simultaneous Equations
Functions for Creating Summary Tables for Statistical Reports
Produces summary tables and exports them to multi-tab
spreadsheet format (.xls or .xlsx)
Create "Table 1" to describe baseline characteristics
Represents tables as semi-graphic displays
Tableplot, a visualization of large datasets
Tabplotd3, interactive inspection of large data
Tools for the Analysis of Microchemical Profiles from Otoliths
Time Course Analysis of Variance for Microarray
Flexible tree taper curves based on semiparametric mixed models
Collection of utility and convenience functions
Earthquake Traveltime Calculations for 1-D Earth Models
Provides various portfolio optimization strategies including
random matrix theory and shrinkage estimators
Taxonomic information from around the web
Taxonomic standardization of plant species names
Functions for tuberculosis diagnostics research
Tree Branches Evaluated Statistically for Tightness
Statistical Tools for Topological Data Analysis
Time-Domain Deconvolution of Seismometer Response
A Tool for Therapeutic Drug Monitoring (TDM)
Demonstrations for teaching and learning
Selection of samples and parameter estimation in finite
population
Fits neural networks to learn about back propagation
Turbulence Time Series Event Detection and Classification
Trimmed Elemental Estimation for Linear Models
Model-based clustering and classification with the multivariate
t-distribution
Methods for Temporal Disaggregation and Interpolation of
TimeSeries
Advanced tensors arithmetic with named indices
Test for A+B Traditional Escalation Rule
Fit, Simulate and Diagnose Models for Network Evolution based on
Exponential-Family Random Graph Models
Visualisation, verification and calibration of ternary
probabilistic forecasts
Fast simulation of reconstructed phylogenetic trees under
time-dependent birth-death processes
Tests and checks characteristics of R objects
GUI for entering test items and obtaining raw and transformed
scores
Statistical tests to compare two survival curves with recurrent
events
Testthat code. Tools to make testing fun :)
A mocking, stubbing, and file testing framework extending
testthat
Conversion of R regression output to LaTeX or HTML tables
Textual Data Analysis Package used by the TXM Software
TFDEA (Technology Forecasting using DEA)
Efficient and accurate P-value computation for Position Weight
Matrices
Thresholded variable selection and prediction based on
estimating equations
Optimum threshold estimation based on cost function in a two and
three state setting
Functions for timing R scripts, as well as implementations of
Stack and List structures
Create dynamic reports using a TiddlyWiki template
Easily tidy data with spread and gather functions
Hidden Markov Models for ChIP-on-Chip Analysis
Characterization of functional genes in complex microbial
communities using tiling DNA microarrays
Rmetrics - Chronological and Calendar Objects
Time-ordered and time-aggregated network analyses
Flexible regression models for survival data
Time-dependent ROC curve and AUC for censored survival data
Bootstrap computations for time series objects
Rmetrics - Financial Time Series Objects
provides objects and tools to manipulate irregular heterogeneous
time data and subtime data
a problem solving environment for fitting separable nonlinear
models in physics and chemistry applications
TIMe Series Analysis and Control package
Tinflex - Universal non-uniform random number generator
Automated measure-based classification for flint tools
Titration analysis for mass spectrometry data
Effects under Linear, Logistic and Poisson Regression Models
with Transformed Variables
Linear Student-t Mixed-Effects Models with Censored Data
Two-level normal independent sampling estimation
Targeted Minimum Loss Estimation (TMLE) of a NP variable
importance of a continuous exposure
Import texts from files in the Alceste format using the tm text
mining framework
Import articles from Europresse using the tm text mining
framework
Import articles from Factiva using the tm text mining framework
Import articles from LexisNexis using the tm text mining
framework
Retrieve structured, textual data from various web sources
Truncated Multivariate Normal and Student t Distribution
tnet: Software for Analysis of Weighted, Two-mode, and
Longitudinal networks
analytics and visualization with Aster Database
Functions for calculating tolerance intervals
Inference, aggregation and visualization for top-k ranked lists
Implementation of the hydrological model TOPMODEL in R
Gene Set Analysis Exploiting Pathway Topology
TOPSIS method for multiple-criteria decision making (MCDM)
Instrumental Variables Two Stage Least Squares estimation
Estimation of transitions probabilities in multistate models
A tool for downloading functional traits data for plant species
Track Objects (last release - package name changed to 'track')
Reconstruct animal tracks from magnetometer, accelerometer,
depth and optional speed data
A package for reading, manipulating and visualising magnetic
resonance images
An interface for creating GUIs modeled in part after traits UI
module for python
Trajectory miner: a toolbox for exploring and rendering sequence
data
Extras for use with the TraMineR package
TRFLP Analysis and Matching Package for R
Bindings for the Google and Microsoft Translation APIs
Sensitivity analysis for causal inference
An R package for discovery, access and manipulation of online
phylogenies
Numerical calibration of proxy-climate relationships
Centre of mass assessment and consolidation of trees
Treelets - an adaptive multi-scale basis for high-dimensional,
sparse and unordered data
Estimating birth and death rates based on phylogenies
Simulating trees under the birth-death model
Simulating Phylogenetic Trees under a General Model
Provides the standard distribution functions for the triangle
distribution
Some basic facilities for ternary fields and plots
Propensity Score Matching of Non-Binary Treatments
Trimmed opinion pools of trees in a random forest
A data smoothing approach to explore and test gene-environment
interaction in case-parent trio data
Triangulation of irregularly spaced data
Metropolis sampler and supporting functions for estimating
animal movement from archival tags and satellite fixes
Social Relation Model (SRM) analyses for single or multiple
round-robin groups
Pseudo-Vectors Containing All Permutations, Combinations and
Subsets of Objects Taken from a Vector
Implementation the TrueSkill algorithm in R
GoF tests allowing for left truncated data
Semi-parametric estimators of truncated regression models
Trust region nonlinear optimization, efficient for sparse
Hessians
Calculate normalising constants for Bayesian time series models
Nonlinear time series models with regime switching
Two-dimensional peak sentinel tool for GC x GC-HRTOFMS
Time series analysis and computational finance
TSdbi extension to connect with getSymbols
TSdbi extension for importing time series from web sources via
JSON
Least angle regression for time series analysis
Time Series Modeling for Air Pollution and Health
T-distributed Stochastic Neighbor Embedding for R (t-SNE)
Automatic Detection of Outliers in Time Series
Transposable Sphering for Large-Scale Inference with Correlated
Data
Instance feature calculation and evolutionary instance
generation for the traveling salesman problem
Generic SQL helper functions for TSdbi SQL plugins
Fitting and Predict Time Series Interactive Laboratory
TSdbi extension to connect to spreadsheets
Temporal Trend Analysis Graphical Interface
Genome-wide DNA methylation sites screening by use of training
and testing samples
Multi-objective parameter tuning for classifiers
Find every match, or orphan, duplicate, triplicate, or other
replicated values
A Suite of Convergence Acceleration Schemes for EM, MM and other
fixed-point algorithms
Turn vectors and lists of vectors into indexed structures
Lumped hydrological model developed at the Vienna University of
Technology for education purposes
Toolkit for Weighting and Analysis of Nonequivalent Groups
Interactive manipulation of R expressions
Nonparametric test of equality between two copulas
Compute thresholds and power for two-stage gwas
Conditional logistic regression: A two-step estimation method
UC Berkeley graduate division thesis template
The package implements different data-driven method for
unbalanced datasets
Function estimation via Unbalanced Haar wavelets
Univarate shrinkage prediction in the Cox model
Unimodal penalized spline regression using B-splines
Updated Classification Methods using Unlabeled Data
Unsupervised Photometric Membership Assignment in Stellar
Clusters
Unit root and cointegration tests for time series data
Create US cancer datasets from SEER, IARC, and US Census data
US Census 2000 Block Group Shapefiles and Additional Demographic
Data
US Census 2000 Designated Places Shapefiles and Additional
Demographic Data
US Census 2000 Tract Level Shapefiles and Additional Demographic
Data
Uncertainty analysis for species distribution models
Data sets, etc. for the text "Using R for Introductory
Statistics", second edition
Model-based clustering via mixtures of unrestricted skew-t
factor analyzer models
Analyze system scalability with the Universal Scalability Law
Construct, Evaluate and Plot Value and Utility Functions
Unbinned weighted histogram analysis method (UWHAM)
Vaccination Activities Coverage Estimation Model
Variational inference for Bayesian variable selection
Variance estimation for sample surveys by the ultimate cluster
method
Computes value at risk and expected shortfall for over 100
parametric distributions
VAR modelling: estimation, testing, and prediction
Testing of genotypic variance heterogeneity to detect
potentially interacting SNP
Pricing a variance swap on an equity index
Transform Definition of Variables to R Scripts
Variational Bayes Discrete Mixture Model
Variational Bayes Latent Position Cluster Model for networks
Variational Bayes Spike Regression Regularized Linear Models
Efficiently Read Variant Call Format (VCF) into R
Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Variance Dispersion Graphs and Fraction of Design Space Plots
This package creates variance dispersion graphs and fraction of
design space plots for response surface designs
Variance Dispersion and Fraction of Design Space Plots
like base::sets tools but keeps duplicate elements
Vector analysis using graphical and analytical methods in 2D
Vector analysis using graphical and analytical methods in 3D
Static and dynamic 3D plots for vegan package
Functions to access vegetation databases (Turboveg) and prepare
vegetation data especially its taxonomy for analysis
Jost Diversity Measures for Community Data
Generate high-resolution Venn and Euler plots
Vector Generalized Linear and Additive Models
Discrimination/Classification in very high dimension with linear
and quadratic rules
VIF Regression: A Fast Regression Algorithm For Large Data
Visualization and Imputation of Missing Values
Multivariate Dependence Modeling with Vines
Combination of violin plot with mean and standard deviation
1-D Scatter Plots with Jitter Using Kernel Density Estimates
Generation of Virtual Species Distributions
Visualization of Analysis of Variance(VISOVA)
Package contains a few functions to visualize statistical
circumstances
Graph Probability Distributions with User Supplied Parameters
and Stats
vitality: Fitting routines for the Vitality family of mortality
models
Graphical visualization tools for complex observational data
with focus on health sciences (VizOR)
Frequency Matrix Approach for Assessing Very Low Frequency
Variants in Sequence Records
Generic Voss algorithm (random sequential additions)
Vowel Manipulation, Normalization, and Plotting
Metrics extraction of trees from T-LiDAR data
Generate 3D visualizations for data exploration on the web
Variance Ratio tests and other tests for Martingale Difference
Hypothesis
Variable selection for clustering and classification
Useful functions for visual word recognition research
The W2CWM2C package is a set of functions to produce new
graphical tools for wavelet correlation (bivariate and
multivariate cases) using some routines from the waveslim and
wavemulcor packages
R Interface to W3C Markup Validation Services
A package to simulate constrained phenotypes under a disease
model H1
Weaning Age Reconstruction with Nitrogen isotope analysis
Visualisation and analysis of output files of the hydrological
model WASIM
An R Package for Retrieval, Analysis, and Anomaly Calculation of
Daily Hydrologic Time Series Data
Computes credible intervals for Bayesian wavelet shrinkage
Wavelet change point detection for array CGH data
A package of functions for computing wavelet filters, wavelet
transforms and multiresolution analyses
Wavelet routine for multiple correlation
Basic wavelet routines for one-, two- and three-dimensional
signal processing
Wild Binary Segmentation for multiple change-point detection
SOM networks for comparing patterns with peak shifts
Detection of QTL effects in a small mapping population
World Development Indicators (World Bank)
Weighted Portmanteau Tests for Time Series Goodness-of-fit
Weighted scores method for regression with dependent data
A Hydraulics Package to Compute Open-Channel Flow over Weirs
Weighted Linear Fixed Effects Regression Models for Causal
Inference
Whole Genome Average Interval Mapping for QTL detection using
mixed models
Wilcoxon based gene set enrichment analysis
WhatIf: Software for Evaluating Counterfactuals
{{mustache}} for R, logicless templating
High-speed processing of whole-genome VCF-format variation data,
FASTA-format sequence data and several alignments formats
Weighting by Inverse Distance with Adaptive Least Squares for
Massive Space-Time Data
Fitting many skinny linear models to a single data set
Penalized Regression with Polynomial Basis Expansions
Functions and datasets of the german WikiBook "GNU R"
Wilcoxon-based variable selection in cross-validation
Calculate Indices of Dynamic Interaction for Wildlife Telemetry
Data
windex: Analysing convergent evolution using the Wheatsheaf
index
This package fits eyewitness data using Clark's (2003) WITNESS
model
GUI implementing Bayesian working memory models
Discriminant Analysis Methods by Weight Mahalanobis Distance and
bayes
Wavelet Methods for Time Series Analysis
Matches words in one file with words in another file
Classical word pools used in studies of learning and memory
Wright Map: IRT item-person map with ConQuest integration
Function for exporting data to SNNS pattern files
Cross-platform Perl based R function to create Excel 2003 (XLS)
and Excel 2007 (XLSX) files
Functions for working with Worldwide Reference System (WRS)
Weighted SVM with boosting algorithm for improving accuracy
Competing risks regression models with covariate-adjusted
censoring weight
x12 - wrapper function and structure for batch processing
Extraction of business financial information from XBRL
documents
Extensions for Exponential Random Graph Models (ERGM)
Interface to the XGobi and XGvis programs for graphical data
analysis
Plotting ggplot2 graphics in a XKCD style
JAR dependencies for the XLConnect package
Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
Package required POI jars for the xlsx package
Xiaobei's miscellaneous classes and functions
Tools for parsing and generating XML within R and S-Plus
Exact Goodness-Of-Fit Test For Multinomial Data With Fixed
Probabilities
Tools for analyzing crossover interference
Basic text formatting using xterm escape sequences
Yet Another Canonical Correlation Analysis Package
yaImpute: An R Package for k-NN Imputation
Data exploration tools from Yale University
Methods to convert R data to YAML and back
Yield curve or zero-coupon prices interpolation and
extrapolation
Modelling and estimation of the yield curve
Plant architectural analysis with Yplant and QuasiMC
The Short-term and Long-term Hazard Ratio Model for Survival
Data
YuGene: A simple approach to scale gene expression data derived
from different platforms for integrated analyses
Imputation of Zeros and Nondetects in Compositional Data Sets
ZeBook Working with dynamic models for agriculture and
environment
Bayesian Inference for Zero-Inflated Count Models
Zero-Inflated Models for Count Time Series with Excess Zeros
Statistical models for word frequency distributions
Bayesian Inference for Zero/One Inflated Beta Regression
S3 Infrastructure for Regular and Irregular Time Series (Z's
ordered observations)
Analysis of numerical zooplankton images
For development versions and source code see
http://r-forge.r-project.org/projects/gamboostlss/
http://www.hiplar.org , http://icl.cs.utk.edu/magma/ ,
http://icl.cs.utk.edu/plasma/,
http://www.nvidia.com/object/cuda_home_new.html
The publishers web page is
http://www.crcpress.com/shopping_cart/products/product_detail.asp?sku=C5394
The publishers web page is
http://www.crcpress.com/product/isbn/9781420079333
The publishers web page is
http://www.crcpress.com/product/isbn/9781482204582
http://www.kasparrufibach.ch ,
http://www.ceremade.dauphine.fr/~fadoua ,
http://www.math.yorku.ca/~hkj
http://multcomp.R-forge.R-project.org The publishers web page is
http://www.crcpress.com/product/isbn/9781584885740
http://abarbour.github.io/psd/ and
http://dx.doi.org/10.1016/j.cageo.2013.09.015 for the citation.
https://github.com/ecor/RMAWGENCodeCorner,
https://docs.google.com/file/d/0B66otCUk3Bv6V3RPbm1mUG4zVHc/edit,
http://cri.gmpf.eu/Research/Sustainable-Agro-Ecosystems-and-Bioresources/Dynamics-in-the-agro-ecosystems,
http://presentations.copernicus.org/EGU2012-14026_presentation.pdf,
http://presentations.copernicus.org/EGU2012-5404_presentation.pdf
https://r-forge.r-project.org/projects/rnomads/ (subversion
repository)
http://www.unc.edu/~haksaeng/rNOMADS/rNOMADS_dods_examples.pdf
(GrADS-DODS examples)
http://www.unc.edu/~haksaeng/rNOMADS/rNOMADS_grib_examples.pdf
(grib examples)
The database is described at:
http://astro.df.unipi.it/stellar-models/
Wing Wong's lab (http://www.stanford.edu/group/wonglab/) &
Stanford Genome Technology Center
(http://gluegrant1.stanford.edu/~DIC/)
Image Magick (for reading non PPM format), dcraw
(for reading RAW images).
ImageMagick (http://imagemagick.org) or
GraphicsMagick (http://www.graphicsmagick.org) or LyX
(http://www.lyx.org) for saveGIF(); (PDF)LaTeX for saveLatex();
SWF Tools (http://swftools.org) for saveSWF(); FFmpeg
(http://ffmpeg.org) for saveVideo()
jags (>= 3.3.0, see
http://mcmc-jags.sourceforge.net)
OpenBUGS (>= 3.2.2), hence Windows or Linux
Nvidia CUDA driver (>= 270.xx.xx), Nvidia CUDA
Toolkit (>= release 3.0)
OpenCL library; double-precision AMD or Nvidia GPU;
GNU make
couchDB instance to connect to and work on.
nvcc (release >= 3.1) (NVIDIA Cuda Compiler
driver); Linux operating system.
none, one or more of JAGS (>= 3.0.0), WinBUGS (>=
1.4), OpenBUGS (>= 3.2.2)
Debian or Ubuntu system with access to Goto Blas,
Intel MKL, Atlas development build as well as a Nvidia GPU with
CUDA support
Nvidia's CUDA toolkit (>= release 4.0) and Nvidia
GPU with compute capibility >=2.0
BLAS/LAPACK libraries, PLASMA library , NVIDIA CUDA
toolkit, MAGMA library
Hadoop core >= 0.19.1 and <= 1.0.3
(http://hadoop.apache.org/core/) or CDH3
(http://www.cloudera.com); standard unix tools (e.g., chmod)
A C library with the fesetround/fegetround
functions.
At least trial version of LocalSolver to be
downloaded from http://www.localsolver.com/download.html
MAGMA shared libraries (== release 1.3.0), LAPACK
shared library, NVIDIA CUDA Toolkit (>= release 4.0)
ADMB version 11 (http://admb-project.org/) for
use.admb=TRUE; see readme.txt
Pandoc (http://johnmacfarlane.net/pandoc) for
exporting markdown files to other formats.
For the MERLIN wrapper, MERLIN
(www.sph.umich.edu/csg/abecasis/merlin) must be installed and
pointed to in the PATH environment variable.
OpenMPI (>= 1.5.4) on Solaris, Linux and Mac,
MPICH2 (>= 1.4.1p1) on Windows
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. MS-MPI (Microsoft HPC Pack 2012) or MPICH2 (>=
1.4.1p1) on Windows.
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. MS-MPI (Microsoft HPC Pack 2012 R2 MS-MPI
Redistributable Package) on Windows.
OpenMPI (>= 1.5.4) on Solaris, Linux and Mac.
(Parallel) HDF5 and (Parallel) NetCDF4 (4.1 or later)
libraries. No MPI library required on Windows.
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. No MPI library required on Windows yet.
Python 2.7.x or Python 3.2.x-3.4.x, NumPy (Python
scientific computing package)
proj 4.4.6 or higher (http://proj.maptools.org/)
Qt4 libraries and headers (http://qt.nokia.com),
cmake (http://www.cmake.org)
GMP (GNU MP bignum library from http://gmplib.org/)
Octave (>= 3.2.4) and its development files
The hiredis library (eg via package libhiredis-dev
on Debian/Ubuntu, hiredis-devel on Fedora/RedHat, or directly
from source from https://github.com/redis/hiredis)
libcurl (version 7.14.0 or higher)
http://curl.haxx.se. On Linux systems, you will often have to
explicitly install libcurl-devel to have the header files and
the libcurl library.
DieHarder library (>= 3.31.1) from
http://www.phy.duke.edu/~rgb/General/dieharder.php, GNU GSL for
the GSL random-number generators
MOSEK (http://www.mosek.com) and MOSEK License for
use of Rmosek.
for building from source: GDAL >= 1.6.3, < 2
library from http://trac.osgeo.org/gdal/wiki/DownloadSource and
PROJ.4 (proj >= 4.4.9) from http://trac.osgeo.org/proj/; GDAL
OSX frameworks built by William Kyngesburye at
http://www.kyngchaos.com/ may be used for source installs on
OSX.
GEOS (>= 3.2.0); for building from source: GEOS
from http://trac.osgeo.org/geos/; GEOS OSX frameworks built by
William Kyngesburye at http://www.kyngchaos.com/ may be used
for source installs on OSX.
OpenGL, GLU Library, zlib (optional), libpng
(>=1.2.9, optional), FreeType (optional)
GLPK library package (e.g., libglpk-dev on
Debian/Ubuntu)
Hadoop core >= 0.20.3
(http://hadoop.apache.org/core/), Hive >= 0.8
(http://hive.apache.org/)
GNU make, R built as a shared or static library,
MPI library.
curl (version 7.12.0 or higher)
<http://curl.haxx.se>
notepad.exe, mark.exe (>= 8.0) (or mark32.exe and
mark64.exe) and rel_32.exe (see README.txt)
pandoc (>= 1.12.3) -
http://johnmacfarlane.net/pandoc
Oracle Instant Client or Oracle Database Client
Poppler Glib interface headers and libraries
(<http://poppler.freedesktop.org/>) [Debian/Ubuntu:
libpoppler-glib-dev, Fedora: poppler-glib-devel]
Protocol Buffer compiler (to create C++ header and
source files from .proto descriptions) and library (version
2.2.0 or later)
The 'curl' binary has to be in the path (and this
is checked at package startup), a user API key (which can be
obtained from http://www.pushbullet.com), and one or more
devices to push messages to (which may be any one of an
(Android or iOS) phone, iPhone, or the Chrome browser provided
the corresponding Pushbullet 'app' has been installed on any
one of these).
Windows, Python (>= 2.4.0), ArcGIS (>= 9.2)
Python (>= 2.7) and Python headers and libraries
(See the INSTALL file)
QuantLib library (>= 0.9.9) from
http://quantlib.org, Boost library from http://www.boost.org
need the RDRAND instruction on Intel CPU. and C
compiler must be able to compile a GNU-style in-line assembler.
NW RFC SDK downloaded from http://service.sap.com
Tcl/Tk (>= 8.5), Tktable (>= 2.9, optional)
SYMPHONY for Windows (sources included for other
OSes)
The Boost 'program_options' library
(http://boost.org) is required.
Python (>=2.6) in path and NumPy module installed,
ghostscript (>=9.0)
GLPK library, including -dev or -devel part
Binary executables of X-13ARIMA-SEATS (installation
notes: see README or vignette)
(PDF)LaTeX (http://www.latex-project.org/) with
'pdfpages' package for studentGrowthPlot option in visualizeSGP
to bind together student growth plots into school catalogs
Komodo Edit (http://www.openkomodo.com), SciViews-K
(http://www.sciviews.org/SciViews-K)
Antiword (http://www.winfield.demon.nl/) for
reading MS Word files, pdfinfo and pdftotext from Poppler
(http://poppler.freedesktop.org/) for reading PDF
Teradata Aster 5.1 or higher, Teradata Aster
Analytical Foundation 5.10 or higher (5.11 or higher is
recommended)
python 2, python-sys, python-json,
python-mechanize, python-re, python-csv, python-urllib2
PARI/GP >= 2.3.0 [strongly recommended for
logkda()]
A Javascript enabled web browser with internet
connection
Nvidia's CUDA toolkit (release >= 4.1); Linux
operationg system; gcc (release <= 4.5).
Java (>= 5.0); WordNet database files (direct
download:
<http://wordnetcode.princeton.edu/3.0/WNdb-3.0.tar.gz>; Debian
and Fedora package: wordnet)
Perl (>= 5.0), Unitex (>= 3.0
http://www-igm.univ-mlv.fr/~unitex/)
The standalone program xgobi must be installed
additionally, see file README, or INSTALL.windows under Windows
abctools, BCBCSF, depth, dgmb, EBMAforecast, fractaldim, GhcnDaily, hyperdirichlet, informR, magic, MetStaT, mlogitBMA, multicon, MultiPhen, multipol, mvProbit, neuroim, plfm, QCAGUI, RcmdrPlugin.EACSPIR, RcmdrPlugin.EBM, RcmdrPlugin.epack, RNCEP, simSummary, spBayes, synbreed
ade4TkGUI, adegenet, adehabitat, adehabitatHR, adehabitatHS, adehabitatLT, adephylo, cati, DDD, ecospat, ENiRG, FactoClass, FD, genoPlotR, hierfstat, Laterality, oncomodel, PBD, rmetasim, sideChannelAttack
adhoc, apTreeshape, BAMMtools, bayou, BioGeoBEARS, caper, cati, coalescentMCMC, corHMM, DDD, DiscML, distory, diversitree, ecospat, evobiR, expoTree, FD, geiger, GUniFrac, HAP.ROR, HMPTrees, homals, HyPhy, iteRates, laser, MCMCglmm, MPSEM, mvMORPH, mvSLOUCH, OUwie, paleotree, pastis, PBD, pcrcoal, pegas, phangorn, phyclust, phyext, phyloclim, phylolm, phylosim, phylotools, phyloTop, phytools, picante, PVR, RADami, recluster, rmetasim, RNeXML, Rphylip, SeqFeatR, sharpshootR, spider, strap, surface, TESS, treebase, TreePar, TreeSim, windex
BaM, bayesMCClust, compositions, psbcGroup, siar
Bayesianbetareg, biasbetareg, gcmr, mfx, SetMethods
bigalgebra, biganalytics, bigpca, bigrf, bigtabulate
cdb, CHCN, cherry, couchDB, GENEAread, geozoo, muma, R4CouchDB, RCurl
aods3, biotools, bootES, cardidates, catenary, CircStats, classyfire, Comp2ROC, Compind, CorrBin, CovSel, cramer, dawai, DCluster, dhglm, DLMtool, equivalence, eventstudies, experiment, fishmethods, frailtypack, gb, HPbayes, IUPS, joineR, laeken, LCAextend, MDSGUI, mem, mixtools, nFactors, Oncotree, pastecs, popKorn, prLogistic, pse, PsumtSim, QuantPsyc, R2WinBUGS, randomLCA, random.polychor.pa, reglogit, relaimpo, rich, sampSurf, simboot, simpleboot, SiZer, SPmlficmcm, survrec, TestSurvRec, timesboot, titan, tlm, truncSP, verification, Zelig
leafletR, Rook, sdcMicro, SortableHTMLTables, sos
AtelieR, fit4NM, PKgraph, PKmodelFinder, playwith, PoMoS, rsgcc, RunuranGUI, sdcMicroGUI, WMCapacity
AER, afex, alr3, alr4, bartMachine, bgmm, candisc, CrypticIBDcheck, DAMisc, Deducer, DiagTest3Grp, DistatisR, drc, epr, extRemes, genridge, granova, heplots, hysteresis, ibd, incReg, lmSupport, LogisticDx, mosaic, muma, mvinfluence, nlrwr, papeR, pequod, phia, Rcmdr, RcmdrMisc, RcmdrPlugin.SM, RcmdrPlugin.StatisticalURV, ryouready, seeg, specificity, splm, systemfit
cmrutils, crn, ensembleBMA, ensembleMOS, Interpol.T, kerdiest, MicSim, RH2, RMAWGEN, SASxport, StreamMetabolism
ascrda, chemometrics, clv, ddalpha, EILA, geneSignatureFinder, kohonen, lineup, longitudinalData, mda, Modalclust, msr, msSurv, MVpower, protoclass, SesIndexCreatoR, svapls, wccsom
AdaptFit, bios2mds, ccChooser, clustergas, clusterSim, clv, clValid, CORM, dbstats, dpmixsim, FunCluster, gclus, geneSignatureFinder, GLDEX, hybridHclust, ICGE, isopam, knnGarden, maptree, MSeasy, NMF, optpart, pamr, popgen, qrfactor, RPMM, spa, TSclust, WeightedCluster
kml, kml3d, longitudinalData, MOCCA, weightedKmeans, wskm
adaptMCMC, adaptsmoFMRI, anominate, B2Z, BaM, bamdit, BANOVA, BayesComm, bayescount, BayesFactor, bayesGARCH, BayesLCA, bayespref, BayesSAE, bayesSurv, Bayesthresh, bayou, BAYSTAR, Bergm, BEST, bisoreg, bmk, boral, coalescentMCMC, codadiags, cplm, dclone, ddepn, eggCounts, eiPack, elrm, endorse, evolvability, FME, gemtc, hierarchicalDS, HSROC, HybridMC, hzar, iFad, IsotopeR, MasterBayes, mcgibbsit, MCMCglmm, MCMCpack, mcmcplots, mcsm, metamisc, PhaseType, phcfM, phenology, popReconstruct, prevalence, qtlbim, R2MLwiN, R2WinBUGS, ramps, rjags, season, siar, SPACECAP, spatial.gev.bma, spBayes, spTimer, stocc, stochvol, superdiag, TBSSurvival, TESS, WMCapacity, zic, zoib
biclust, BiplotGUI, coloc, effects, frontiles, gamlss.util, mixAK, msr, prefmod, R2BayesX, RcmdrPlugin.SM, snpStatsWriter, spacodiR, tourrGui, VIM, YaleToolkit
ABCExtremes, bayess, bgmm, cem, CorrBin, fcd, FLR, forensic, genetics, label.switching, MetaDE, NSM3, pcIRT, PoissonSeq, prob, RMallow, SNPmaxsel, symmoments, TraMineRextras
gskat, iGasso, MiST, pedgene, rvTDT, skatMeta, STARSEQ
CoClust, CoImp, HiDimMaxStable, nacopula, RMRAINGEN, SemiParSampleSel, vines
arf3DS4, BinNor, care, clustrd, EDISON, FRB, FRCC, GeneNet, GLSME, Hotelling, HPbayes, jackstraw, kcirt, leapp, longitudinal, MAVTgsa, mgpd, miRtest, MultiOrd, mvMORPH, mvSLOUCH, OrdNor, penalizedSVM, PoisNor, qtlhot, sda, sideChannelAttack, SMFI5, ttScreening
CovSel, spatialTailDep, SphericalCubature, stppResid, symmoments, yuima
edgeRun, greport, LogisticDx, psidR, Rbitcoin, SciencesPo, sdcMicro, sdcTable, slackr, splitstackshape, survMisc, ttwa, vardpoor
Interpol.T, kerdiest, modiscloud, RcmdrPlugin.survival, relsurv, RMAWGEN, ROCt
archivist, biglm, CITAN, datamap, filehashSQLite, MonetDB.R, ODB, ora, RJDBC, RMySQL, ROracle, RPostgreSQL, RSQLite, RSQLServer, sqlutils
DeducerExtras, DeducerPlugInExample, DeducerPlugInScaling, DeducerSpatial, DeducerSurvival, DeducerText
adehabitatHR, BiplotGUI, datautils, expp, ibeemd, stppResid
EcoHydRology, FuzzyStatProb, galts, IBHM, likeLTD, micEconCES, selectMeta
AquaEnv, bvpSolve, CollocInfer, DDD, diffEq, DivE, diversitree, ecolMod, ecosim, embryogrowth, expoTree, FME, insideRODE, neuRosim, nlmeODE, pauwels2014, PBD, phaseR, primer, PSM, ReacTran, scaRabee, simecol, SoilR, TESS, TreePar, tseriesChaos, ZeBook
DiceEval, DiceOptim, DiceView, fanovaGraph, KrigInv, MuFiCokriging
ElstonStewart, gWidgets2, gWidgets2tcltk, gWidgetstcltk, MonetDB.R, optmatch, ROAuth, traitr
distrEllipse, distrEx, distrMod, distrRmetrics, distrSim, distrTeach, RandVar, RobAStBase, ROptEst, ROptEstOld
distrEllipse, distrMod, distrTeach, RandVar, RobAStBase, ROptEst, ROptEstOld
JAGUAR, OmicKriging, PTE, randomGLM, sms, turboEM, vectoptim, VSURF
ascrda, BayesLCA, bayesMCClust, bios2mds, BSDA, chemometrics, classyfire, clustrd, eegAnalysis, flip, gskat, InventorymodelPackage, KsPlot, MAclinical, mlDNA, msr, obliqueRF, PASWR, penalizedSVM, RMediation, tiger, VHDClassification
complex.surv.dat.sim, OrdFacReg, parfm, rriskDistributions, survsim
betaper, CrypticIBDcheck, FreeSortR, LSD, lvm4net, mada, mdsdt, MetabolAnalyze, metamisc, MNM, RAMpath, SMPracticals
approximator, BACCO, calibrator, cmvnorm, lmmlasso, MM
Bergm, blkergm, CCMnet, ergm.count, ergm.userterms, hergm, latentnet, lvm4net, networksis, statnet, tergm, VBLPCM, xergm
condmixt, crackR, ddst, evt0, mgpd, Renext, ROptEstOld, truncdist
EnQuireR, factas, missMDA, RcmdrPlugin.FactoMineR, RSDA, SensoMineR, SesIndexCreatoR
AnalyzeFMRI, fastHICA, gogarch, icaOcularCorrection, isva, rgr
distrRmetrics, fArma, fAsianOptions, fAssets, fBonds, fCertificates, fCopulae, fExoticOptions, fExtremes, fGarch, fMultivar, fNonlinear, fOptions, fRegression, fTrading, fUnitRoots, HBSTM, LSMonteCarlo, rsgcc
Actigraphy, CCA, CollocInfer, cyphid, DierckxSpline, fdatest, fda.usc, FDRreg, Funclustering, funFEM, funHDDC, GPFDA, mar1s, pencopula, pendensity, penDvine, refund, sde, sft, switchnpreg, vows
DBGSA, ERP, GeneCycle, GeneNet, sda, st, TBEST
biglars, dualScale, ETLUtils, ffbase, PopGenome, propagate, sprint
distrRmetrics, fExtremes, fNonlinear, GEVStableGarch, gogarch, mleur
ASMap, BaySIC, CCA, chillR, crqa, eegAnalysis, EMD, Geneland, gptk, gwrr, ibeemd, LatticeKrig, LSC, mgpd, palaeoSig, phenology, phylotools, prevR, ProbForecastGOP, R2GUESS, RNCEP, sGPCA, SpatialVx, SpherWave, stilt, stocc, SynchWave, TIMP, TrackReconstruction, verification, Voss
bcp, breakpoint, clustvarsel, doMC, doMPI, doParallel, doRedis, doRNG, doSNOW, fdasrvf, GA, gpmap, hdlm, hzar, localgauss, MAVTgsa, MetaPCA, MetaQC, missForest, multicon, parfossil, PAWL, permGPU, randomGLM, remote, sms, spatial.tools, survSNP, turboEM, vacem, vectoptim
caschrono, demography, expsmooth, fma, fpp, ftsa, hts, MAPA, Mcomp, RcmdrPlugin.epack, Rssa
Amelia, AnDE, BaM, epicalc, intsvy, migui, psidR, R2MLwiN, rAverage, rsubgroup, Rz, shapefiles, UScensus2000blkgrp, UScensus2000cdp, UScensus2000tract, UScensus2010, vegdata
BayesSAE, brnn, CountsEPPM, Demerelate, detect, DirichletReg, games, gcmr, Hmisc, kaps, metafor, mhurdle, mlogit, mvctm, npmv, OutlierDC, plm, plmm, quint, Rchoice, rdd, sharx, simplexreg, spBayes, ssym, StratSel, threg, zoib
CausalGAM, ecospat, LSC, MapGAM, mtsdi, multipleNCC, ProDenICA, xpose4
AGD, binequality, BSagri, gamlss.add, gamlss.cens, gamlss.demo, gamlss.mx, gamlss.nl, gamlss.spatial, gamlss.tr, gamlss.util
bear, cccrm, chromoR, compareGroups, DAMisc, enaR, genetics, iCluster, joineR, LeLogicielR, mixexp, mpMap, NanoStringNorm, nCal, nonparaeff, PF, pSI, weights
diffdepprop, DTComPair, gskat, mmm, mmm2, repolr, saws
boss, gskat, GWAF, MESS, pseudo, qlspack
bayou, evobiR, iteRates, laser, surface, TreeSim, windex
boostSeq, forensic, introgress, luca, MasterBayes
alphashape3d, curvHDR, disp2D, FD, Maeswrap, munsellinterpol, nonparaeff, RadOnc, YplantQMC
aqfig, FeedbackTS, gcmr, geoRglm, LS2Wstat, StatDA
AmpliconDuo, aoristic, apsimr, bcrm, benchmark, breakpoint, caret, catenary, chemosensors, CINOEDV, clusthaplo, clustrd, coefplot, COPASutils, Crossover, Deducer, DepthProc, dfexplore, dslice, DTR, DynNom, earlywarnings, eeptools, egcm, ESGtoolkit, fishmove, freqparcoord, gapmap, gettingtothebottom, ggHorizon, ggmap, ggmcmc, ggparallel, ggRandomForests, ggROC, ggtern, ggthemes, gpmap, granovaGG, gsDesign, GSE, gstudio, intsvy, likeLTD, localgauss, MCMC.OTU, MCMC.qpcr, mcprofile, MergeGUI, meteogRam, micromap, MissingDataGUI, mosaic, MRMR, multilevelPSA, NeatMap, npmv, OutbreakTools, PairedData, pauwels2014, PAWL, pbdPROF, pcaPA, pcrcoal, PedCNV, pequod, performanceEstimation, perry, PhaseType, phylosim, pitchRx, PKgraph, PKreport, PopED, popgraph, PRISMA, profileR, ProgGUIinR, PSAboot, qdap, quadrupen, QualInt, rAltmetric, RAM, Rcell, RcmdrPlugin.KMggplot2, RDS, RGraphics, robustHD, rorutadis, rotations, rplos, RSA, RSDA, Rz, season, sglr, slackr, SMFI5, soc.ca, sotkanet, sparkTable, spcosa, spikeSlabGAM, spocc, statebins, survMisc, timeline, TriMatch, TripleR, tspmeta, useful, userfriendlyscience, vdg, xkcd, YourCast
glassomix, hglasso, lassoscore, rrlda, scout, spaceExt, sparseBC, Tsphere
AdapEnetClass, bigdata, BigTSP, BioMark, cosso, covTest, DivMelt, fcd, FindIt, glmnetcr, hdi, hdlm, KsPlot, lassoscore, mht, MMMS, MMS, msr, oblique.tree, parcor, PAS, refund.wave, relaxnet, RVtests, SIS, SML, sparsenet, SubLasso, widenet
DeducerPlugInScaling, EMMAgeo, PCovR, sdmvspecies, tsfa
allanvar, bayesMCClust, bayess, cellVolumeDist, DandEFA, datautils, DiagTest3Grp, FLLat, ghyp, iCluster, MetabolAnalyze, Meth27QC, muma, PRISMA, rehh, ReorderCluster, rnaseqWrapper, ROCR, rsgcc, SubLasso, swamp
DTR, ESGtoolkit, pbdPROF, primerTree, RDS, rorutadis, RSA, sparkTable, statebins
aws, BayesGESM, BTYD, evmix, LambertW, metacor, palinsol, pgs, QRM, rGammaGamma
geospt, palaeoSig, phenmod, prevR, RSAGA
ASMap, bayesMCClust, crossdes, dice, drc, genetics, GESTr, GGMselect, GSM, hierfstat, hier.part, HUM, iCluster, IDPSurvival, iteRates, JASPAR, likeLTD, LSD, MAMA, MasterBayes, MetabolAnalyze, muma, mvtmeta, ordBTL, orQA, PairViz, RCPmod, REQS, RI2by2, rmetasim, rnaseqWrapper, rpsychi, rvHPDT, sensory, Skillings.Mack, SRRS, trioGxE, WMCapacity
apt, bayesDem, dbConnect, fit4NM, gWidgetsRGtk2, gWidgetstcltk, nCal, PKmodelFinder, pmg, RenextGUI, reshapeGUI, rsgcc, RunuranGUI, tourrGui, traitr, WMCapacity
AtelieR, bayesDem, FAiR, fit4NM, iBUGS, MergeGUI, MicroStrategyR, MissingDataGUI, PKgraph, PKmodelFinder, playwith, pmg, reshapeGUI, RQDA, rsgcc, RunuranGUI, sdcMicroGUI, VIMGUI, WMCapacity
CITAN, GABi, HAP.ROR, KoNLP, neuroim, orderbook, rpartitions, stream
anesrake, aspace, caschrono, cg, colorscience, compareGroups, crackR, EBMAforecast, embryogrowth, ENmisc, EstCRM, etable, evora, FRESA.CAD, FunCluster, Gmisc, greport, gset, hpoPlot, its, lazyWeave, lordif, MEET, MicroDatosEs, nbpMatching, nonparaeff, polytomous, PredictABEL, prLogistic, pse, RcmdrPlugin.mosaic, review, rms, SASxport, tables, UsingR, visualFields, weights, xkcd
couchDB, hoardeR, Rcolombos, Rfacebook, RGoogleAnalytics, rHealthDataGov, RSocrata, slackr, WikipediR
agop, bc3net, BDgraph, c3net, camel, cccd, CDVine, CePa, CINOEDV, cooptrees, corclass, cvxclustr, dcGOR, ddepn, dils, dnet, dpa, ebdbNet, editrules, fanovaGraph, fastclime, FisHiCal, G1DBN, gdistance, GeneNet, GeneReg, genlasso, ggm, gRapfa, hglasso, huge, igraphtosonia, InteractiveIGraph, iRefR, JGL, lcd, linkcomm, locits, loe, micropan, mlDNA, mRMRe, nets, netweavers, optrees, packdep, PAGI, pathClass, PBC, phyloTop, picasso, PoMoS, popgraph, PROFANCY, qtlnet, RCA, ReliabilityTheory, rEMM, rgexf, RNetLogo, ror, RWBP, sand, SEMID, shp2graph, SINGLE, spacejam, TDA, timeordered, tnet
bcp, clustvarsel, doMC, doMPI, doParallel, doRedis, doSNOW, GA, hdlm, itertools, MetaQC, neuroim, parboost, spatial.tools
archivist, jSonarR, leafletR, rHealthDataGov, RSocrata, slackr, WikipediR
CVST, kappalab, MVpower, netClass, pathClass, probsvm, SVMMaj
CHsharp, DiagTest3Grp, EMMIXskew, GenKern, GoFKernel, ICE, IsoCI, ks, MEET, mpm, mpmi, qualV, soil.spec, stpp, TPmsm
ElstonStewart, fat2Lpoly, LCAextend, MasterBayes, paramlink, pedantics, pedgene, RVsharing
BrailleR, EasyHTMLReport, OutbreakTools, PopGenReport, sdcMicro, svSweave
AdapEnetClass, aml, BayesPen, branchLars, chemometrics, covTest, cumSeg, elasticnet, ExactPath, FindIt, GGMselect, gwrr, lmbc, monomvn, multiPIM, PAGWAS, pass, relaxo, RXshrink, scalreg, scout, sealasso, sparseLDA, spikeslab
abcdeFBA, abd, Actigraphy, adaptTest, agridat, agsemisc, ASMap, backtest, barcode, bayescount, bayespref, BayesSAE, bc3net, bgmm, biclust, bifactorial, bigdata, BSDA, camel, caret, cem, coda, compeir, ConvergenceConcepts, Cubist, cvTools, cwhmisc, DAAG, dae, DAMisc, DATforDCEMRI, DCL, ddepn, deseasonalize, Devore7, DierckxSpline, DMwR, DoseFinding, dualScale, effects, eHOF, ELT, emdbook, EMMIXskew, EngrExpt, equivalence, erboost, EstCRM, factorQR, fastclime, FAwR, FitAR, fit.models, flare, flexclust, flexmix, FTICRMS, gbm, gcbd, Giza, gsbDesign, hett, hgam, HH, Hmisc, hotspots, HSROC, huge, hyperSpec, ICEinfer, iCluster, IDPmisc, iGasso, insideRODE, irtProb, joineR, kzs, latticeExtra, lfstat, loa, Maeswrap, mapStats, MCPMod, McSpatial, MDR, memisc, metacom, metrumrg, mice, miP, mirt, mirtCAT, mixexp, mixOmics, mixPHM, mleur, mobForest, MOJOV, MortalitySmooth, mosaic, mritc, msme, msSurv, nFactors, nlmeODE, nlrwr, NRAIA, odfWeave, OLScurve, optiscale, orderbook, PairedData, paleoMAS, PASWR, pbo, pencopula, pendensity, penDvine, phenmod, phmm, picasso, PKgraph, PKreport, PKtools, playwith, pmg, portfolio, portfolioSim, primer, PROFANCY, pscl, qtlbim, qtlhot, R2MLwiN, R330, randomLCA, rapport, rasterVis, RcmdrPlugin.HH, RcmdrPlugin.plotByGroup, RcmdrPlugin.temis, rCUR, REPPlab, RGraphics, rmatio, Rmisc, rms, robfilter, robust, RSA, RxCEcolInf, rysgran, scaRabee, SEL, semPLS, SetMethods, sExtinct, simFrame, sme, SML, soilprofile, solaR, spuRs, sse, survSNP, svdvisual, sybil, synthpop, tigerstats, titan, unmarked, vegan, VHDClassification, violinmplot, VizOR, vwr, waterData, waterfall, WaveCD, weightedKmeans, wgaim, wskm, xpose4, YaleToolkit
DCL, ELT, HH, lfstat, pencopula, rasterVis, RcmdrPlugin.HH, solaR, twang, vwr, waterData, weightedKmeans, wskm
bmem, eqs2lavaan, fSRM, influence.SEM, lavaan.survey, psytabs, RAMpath, RMediation, RSA, rsem, semTools, simsem, stremo
BACprior, bestglm, BMA, FitAR, Kpart, MAR1, R330, reams, speff2trial, TSA
ATmet, DiceOptim, KrigInv, mtk, penalizedSVM
afex, agRee, aods3, arm, Bayesthresh, BBRecapture, blme, boss, BradleyTerry2, cAIC4, carcass, difR, gamm4, GWAF, HLMdiag, influence.ME, JAGUAR, LMERConvenienceFunctions, lmerTest, longpower, marked, MEMSS, Metatron, mixAK, MixMAP, mlmRev, nonrandom, pamm, papeR, PBImisc, pbkrtest, pedigreemm, polytomous, predictmeans, prLogistic, robustlmm, Surrogate, TcGSA, ZeligMultilevel
AER, dcv, erer, fpp, frontier, ivlewbel, ivpack, mfx, micEconAids, MRMR, nlrwr, rdd, splm, systemfit, vars
abc, BBRecapture, curvetest, DATforDCEMRI, ELT, EMD, marginalmodelplots, mcll, McSpatial, mrdrc, nlts, SimpleTable, TSA
capme, cherry, clime, gettingtothebottom, goalprog, ibd, imprProbEst, irr, kappalab, label.switching, linprog, mcclust, mediation, mpcv, nonparaeff, pathClass, RcmdrPlugin.sampling, WhatIf
Benchmarking, boostSeq, editrules, qVarSel, safeBinaryRegression, sdcTable, TFDEA
difR, infutil, irtoys, kequate, lordif, pcaPA, PerFit
archivist, MRMR, RGoogleAnalytics, seawaveQ, TimeProjection, TSAgg
DMR, drc, geometry, MM, SNSequate, SODC, spBayes
etasFLP, FeedbackTS, M3, swfscMisc, ternvis
FeedbackTS, fields, fossil, GeoLight, HBSTM, M3, mapdata, mapproj, muRL, NightDay, OIdata, paleobioDB, phytools, ramps, RNCEP, s2dverification, ternvis
cshapes, DeducerSpatial, Digiroo2, geospacom, GISTools, GWmodel, helsinki, KappaV, lakemorpho, MapGAM, mapStats, McSpatial, micromap, Nippon, pycno, qrfactor, rCarto, shp2graph, StreamMetabolism, ternvis, UScensus2000blkgrp, UScensus2000cdp, UScensus2000tract, UScensus2010
adaptMCMC, adaptsmoFMRI, agop, ahaz, arm, arules, bayesGDS, bc3net, BCE, BDgraph, bigdata, BinNor, boss, cAIC4, camel, cherry, CLSOCP, CountsEPPM, covLCA, CoxBoost, coxinterval, coxme, cplm, crqa, CVST, cvxclustr, DAGGER, dcGOR, dhglm, distrom, dosresmeta, DoubleCone, dualScale, EMMREML, epoc, excursions, expm, factas, FAiR, fanc, fastclime, fastcox, fda, fExpressCertificates, flare, frailtyHL, FTICRMS, GAMBoost, gamlr, gamlss.util, gamm4, gcdnet, gdistance, geeM, genlasso, GenOrd, GeoDE, geostatsp, gettingtothebottom, glmnet, goric, gptk, GPvam, GrassmannOptim, growthrate, grpreg, gskat, gvcm.cat, gwerAM, hglm, hglm.data, hierarchicalDS, HiPLARM, huge, inarmix, IPMpack, isotonic.pen, kinship2, klin, LargeRegression, ldr, lfe, lme4, LMERConvenienceFunctions, lmerTest, LMest, loe, logcondiscr, longpower, LPmerge, LSC, lsgl, MatrixModels, mclogit, MCMCglmm, MDPtoolbox, mediation, MEET, mefa4, metafor, Metatron, minque, MMS, msda, msgl, msr, MultiOrd, mvglmmRank, nadiv, nonlinearTseries, optimbase, ORDER2PARENT, OrdNor, PBImisc, PCovR, pedgene, pedigree, pedigreemm, penDvine, PenLNM, phmm, picasso, PivotalR, PoisNor, powerr, PRISMA, PROFANCY, pvclass, qgtools, qlcMatrix, qpcR, QRM, quadrupen, R2STATS, ramps, rCUR, REBayes, recommenderlab, reglogit, RFGLS, rmatio, Rmosek, RMRAINGEN, robustlmm, sensory, sglasso, sglOptim, sGPCA, SINGLE, skatMeta, smam, SML, SMNCensReg, softImpute, SOR, spacejam, sparseHessianFD, sparseMVN, spatialprobit, SpatioTemporal, spdep, speedglm, splm, StableEstim, stocc, svcm, sybil, sybilccFBA, sybilcycleFreeFlux, sybilEFBA, sybilSBML, systemfit, textir, TimeProjection, tmvtnorm, TreePar, wfe
Bayesthresh, BioPhysConnectoR, dualScale, fdasrvf, pom, rrlda, semGOF, SharpeR, Skillings.Mack, zoib
FastHCS, FastPCS, FastRCS, fslr, GAD, localgauss, LS2Wstat, NSA, r2dRue, samr, ttScreening, visualFields
censReg, games, IntLik, intReg, LambertW, lmmot, mhurdle, mlogit, mlogitBMA, mvProbit, pglm, Rchoice, sampleSelection, splm, truncreg
expectreg, FDboost, gamboostLSS, globalboosttest, parboost
Bclim, BiSEp, chemometrics, clustvarsel, CNprep, CNVassoc, EMCC, GESTr, LifeTables, MetabolAnalyze, msos, npde, prabclus, robustDA, Simpsons, SQN, upclass
adaptsmoFMRI, anominate, BayesCR, BayesMed, BayesPen, bayespref, CoinMinD, cudia, gset, hierarchicalDS, HMP, HSROC, hzar, miscF, NHMM, PhViD, R2GUESS, RxCEcolInf, SimpleTable, uskewFactors
intsvy, MicroDatosEs, munfold, Rz, StratSel
AdaptFitOS, bgeva, dlmap, dsm, DSpat, DSsim, eHOF, fda.usc, FWDselect, gamlss.add, gamlss.spatial, gamm4, Haplin, icaOcularCorrection, iRegression, ismev, labdsv, logistf, MAPLES, modTempEff, mombf, MPINet, nontarget, ordPens, R2BayesX, reams, reldist, RfmriVC, robustgam, scam, season, SemiParBIVProbit, SemiParSampleSel, STAR, trioGxE, TSA, ZeligGAM
BaM, CALIBERrfimpute, HardyWeinberg, hot.deck, logistf, miceadds, miP, SYNCSA
AquaEnv, cellVolumeDist, FME, HydroMe, micEconCES, mkin, propagate, qpcR, Ritc
brainR, curvHDR, grt, kml3d, ks, longitudinalData, mritc, ptinpoly, VecStatGraphs3D
DIFlasso, FRESA.CAD, IQCC, lmmlasso, MAINT.Data, maxLik, polywog
bayesMCClust, bayess, ERP, FAMT, MaXact, mdsdt, PAGWAS, PLordprob, qtlhot, siar, StratSel, Sunder
BrailleR, earlywarnings, irtProb, LambertW, LIHNPSD, MiClip, MVN, royston, spfrontier
ATmet, BaSTA, BVS, eiPack, hysteresis, lordif, ltm, NEff, NHMM, parfm, RM2, rriskDistributions, spatial.gev.bma, Surrogate, trioGxE
bifactorial, BSagri, factorplot, HH, LogisticDx, MAVTgsa, mixlm, mutossGUI, nparcomp, RcmdrPlugin.coin, RcmdrPlugin.doex, RcmdrPlugin.StatisticalURV
adaptsmoFMRI, AdMit, asd, AssotesteR, B2Z, BACprior, BAEssd, BayesCR, bayesGARCH, Bayesianbetareg, Bayesthresh, BAYSTAR, bcrm, Bergm, bgmm, bifactorial, BinNor, Bmix, CAMAN, caper, CDM, CDVine, CPMCGLM, crawl, cslogistic, cudia, dawai, depend.truncation, distrEllipse, dmt, DoseFinding, DunnettTests, edrGraphicalTools, EMC, EMMIXskew, emulator, FactMixtAnalysis, fdasrvf, fExpressCertificates, fgof, ForImp, freqparcoord, genetics, GenOrd, GGMselect, glassomix, glmpathcr, GLSME, goric, growthrate, gset, hbim, hdrcde, hglasso, hierarchicalDS, HPbayes, hsmm, hyperSpec, ICS, ICSNP, IMIS, imputeYn, kcirt, ks, lava.tobit, lawstat, LCAextend, lmec, LogConcDEAD, logcondiscr, lordif, LSMonteCarlo, mada, MAMS, mc2d, MCPMod, mediation, MetabolAnalyze, metamisc, MFDA, mhsmm, miceadds, miscF, miscFuncs, MitISEM, MixGHD, mixsmsn, mmcm, MNM, Modalclust, mombf, MRsurv, multcomp, multinomRob, MultiOrd, multxpert, muma, mutoss, mvProbit, mvSLOUCH, nicheROVER, nparcomp, OptInterim, OrdNor, PairedData, paleoTS, pamm, parallelMCMCcombine, PAWL, pcaPP, plgp, PoisNor, polycor, powerGWASinteraction, PowerTOST, psbcGroup, QRM, R2GUESS, RAD, reglogit, RfmriVC, RidgeFusion, RxCEcolInf, SamplerCompare, schwartz97, selectiongain, SeleMix, SemiParBIVProbit, SemiParSampleSel, SEMModComp, simboot, snipEM, SNPassoc, SNPmaxsel, sp23design, spate, spatialnbda, spatialprobit, spatialTailDep, spfrontier, ssmrob, SSsimple, Stem, symmoments, texmex, timeROC, tlmec, tmvtnorm, uskewFactors, varSelectIP, weightedScores, yuima
Bergm, Blaunet, blkergm, CCMnet, enaR, EpiModel, ergm, ergm.count, ergm.userterms, latentnet, mpa, ndtv, networkDynamic, networkDynamicData, networksis, OutbreakTools, pcnetmeta, statnet, tergm
EpiModel, ndtv, networkDynamicData, statnet, tergm
abd, AdaptFit, AdaptFitOS, bear, BiDimRegression, cati, cccrm, cem, coxme, CpGassoc, dlmap, DPpackage, far, FlexParamCurve, ForeCA, gamlss, gbs, gcmr, goric, HydroMe, insideRODE, ipdmeta, IPMpack, JM, JMbayes, joineR, JointRegBC, JoSAE, likelihood, lmeSplines, lmmfit, longpower, LoopAnalyst, LVMMCOR, meboot, MethComp, mgcv, mixlow, MSwM, multilevel, mvctm, nlmeODE, nlrwr, orQA, papeR, pheno, picante, PKtools, plmm, portfolio, predictmeans, ProfileLikelihood, psychometric, ramps, REEMtree, RepeatedHighDim, sae, sitar, splm, SPREDA, Surrogate, TapeR
abc, ascrda, BaBooN, BaM, CBPS, chemometrics, DAMisc, depmixS4, epicalc, factorplot, gamlss.add, gamlss.mx, HIest, ImpactIV, introgress, KsPlot, LOGICOIL, MDM, mixedQF, partialOR, pocrm, synthpop
AID, BrailleR, LambertW, MVN, mvsf, RcmdrPlugin.EACSPIR, royston
alabama, B2Z, catIrt, CBPS, CompLognormal, compound.Cox, copCAR, dhglm, DOBAD, fdasrvf, fgof, frailtyHL, ghyp, HPbayes, lmeNB, ltbayes, mederrRank, mgpd, MixGHD, MPTinR, mvglmmRank, mvSLOUCH, optextras, optimx, PKmodelFinder, PSM, QRM, Rcgmin, RCPmod, SemiMarkov, SpeciesMix, SPmlficmcm, ssym, STARSEQ, stremo, turboEM
brainR, cudaBayesreg, dcemriS4, dpmixsim, fslr
evtree, NHEMOtree, psychotree, quint, vcrpart
pbdBASE, pbdDEMO, pbdDMAT, pbdSLAP, pmclust
ccaPP, chemometrics, muma, OutlierDM, rainbow, rrcov, rrcovHD, rrlda
DIFlasso, lmmlasso, multiPIM, ROC632, subtype, uplift
astro, audiolyzR, cccd, cytoDiv, drc, dupiR, earth, EasyStrata, epade, factas, GeneticTools, hpoPlot, HTSDiff, magicaxis, MetFns, mutossGUI, optpart, SeqFeatR, simplexreg, surv2sampleComp
abctools, autopls, BioMark, chemometrics, ChemometricsWithR, chemosensors, chillR, dbstats, lspls, MetStaT, mixlm, monomvn, muma, obliqueRF, RcmdrPlugin.NMBU, robCompositions, RVtests, svapls
abctools, bcpa, bigml, bmk, chemosensors, CPMCGLM, cshapes, demi, EBMAforecast, EIAdata, emdbook, fishmove, gcbd, ggHorizon, ggmcmc, ggparallel, gpmap, gsDesign, intsvy, ivlewbel, JAGUAR, MRMR, multilevelPSA, NAPPA, plotSEMM, PMA, profileR, psytabs, pxR, rAltmetric, rapport, rcbalance, Rcell, RDSTK, remix, reshapeGUI, RForcecom, Rmisc, RSAGA, RStorm, smatr, timeordered, TR8, wordmatch
adhoc, gaussquad, kza, kzft, orthopolynom, rationalfun
colorscience, conicfit, mixlm, RAHRS, TapeR, TDD, VideoComparison
DistatisR, ExPosition, InPosition, MExPosition, TExPosition, TInPosition
CoxBoost, Cprob, MIICD, riskRegression, timereg
argparse, AtelieR, benchmark, DescribeDisplay, DTR, ggHorizon, gsubfn, MetaQC, multilevelPSA, nls2, PKgraph, pmg, R2STATS, Rcell, sqldf, traitr
cba, cccd, dtw, kst, recommenderlab, rEMM, smdc, StatMatch, stream, TSdist
BinNor, Compind, DeducerPlugInScaling, HDMD, multicon, multilevelPSA, MultiOrd, nFactors, nonparaeff, orddom, psytabs, random.polychor.pa, Rz, SODC, SSDforR, SubLasso
ASMap, dlmap, eqtl, lineup, mpMap, mQTL, pheno2geno, qtlbim, qtlbook, qtlhot, qtlnet, wgaim, xoi
BSquare, cosso, DAGGER, directlabels, FRAPO, goric, imputeYn, iterLap, kappalab, kinship2, ldlasso, MonoPoly, pencopula, penDvine, popbio, SEL, SPIn, ternvis, wSVM
abc, AOfamilies, Brq, BSquare, cobs, EILA, emplik, GeoXp, lss, McSpatial, mvctm, OutlierDC, OutlierDM, pheno, quantregGrowth, Rfit, riv, RobPer, turboEM, UsingR, vdg
Agreement, FFD, HTMLUtils, PKtools, psytabs, RcmdrPlugin.EACSPIR, STAR
DSpat, Geneland, GeoGenetix, LS2Wstat, ProbForecastGOP
AUCRF, bartMachine, BigTSP, Boruta, cem, KsPlot, MAVTgsa, missForest, mlDNA, ModelMap, MVpower, partitionMap, quantregForest, spikeslab, sprint, trimTrees, varSelRF, VSURF
McSpatial, RapidPolygonLookup, RWBP, StatMatch, unbalanced
biomod2, crawl, dismo, dynatopmodel, ENiRG, ENMeval, gdistance, geostatsp, geotopbricks, gfcanalysis, gstudio, lgcp, mapmisc, maxlike, meteoForecast, MigClim, ModelMap, modiscloud, move, OpenStreetMap, paleobioDB, phyloclim, PopGenReport, rasterVis, remote, rts, sampSurf, sirad, spatial.tools, usdm, virtualspecies
EnQuireR, RcmdrPlugin.BCA, RcmdrPlugin.coin, RcmdrPlugin.depthTools, RcmdrPlugin.doex, RcmdrPlugin.EBM, RcmdrPlugin.EcoVirtual, RcmdrPlugin.epack, RcmdrPlugin.mosaic, RcmdrPlugin.MPAStats, RcmdrPlugin.plotByGroup, RcmdrPlugin.pointG, RcmdrPlugin.ROC, RcmdrPlugin.seeg, RcmdrPlugin.SM, RcmdrPlugin.steepness, RcmdrPlugin.UCA
bayespref, beadarrayFilter, DeducerText, ENmisc, FieldSim, ggHorizon, GISTools, introgress, latticeExtra, LeLogicielR, linkcomm, LSC, LSD, MDSGUI, micromap, msr, mvtsplot, PF, phenmod, profileR, qdap, qPCR.CT, RArcInfo, rCarto, RcmdrPlugin.pointG, RcmdrPlugin.SM, RFLPtools, RNCEP, separationplot, statebins, TrackReconstruction, TraMineRextras, wordcloud
AdaptiveSparsity, Amelia, BayesComm, bcp, bcpa, bfp, bifactorial, CARBayes, CARBayesST, ccaPP, clogitL1, ClustVarLV, ConConPiWiFun, copCAR, dbmss, dendextendRcpp, DepthProc, dils, diversitree, dslice, ecp, EpiContactTrace, fastGHQuad, FBFsearch, fugeR, GeneticTools, GENLIB, geoCount, gMWT, GPvam, growcurves, growfunctions, GSE, GUTS, HUM, hypervolume, IBHM, IsingSampler, JAGUAR, kmc, lm.br, lme4, mice, miscF, Mposterior, MVB, NetSim, ngspatial, NPBayesImpute, oem, orQA, PedCNV, PerMallows, phom, PoweR, propagate, quadrupen, Rclusterpp, rcppbugs, RcppClassicExamples, RcppDE, RcppExamples, RcppOctave, RcppProgress, RcppRoll, RcppXts, remote, revealedPrefs, rexpokit, Rmalschains, Rmixmod, RmixmodCombi, robustgam, rotations, RSNNS, RSofia, Rsomoclu, RVowpalWabbit, sdcTable, sequences, simFrame, snipEM, snplist, SOD, spacodiR, sparseHessianFD, StMoSim, surveillance, survSNP, tbart, treeclim, unmarked, VideoComparison, waffect, WideLM, wsrf, zic
Amelia, BayesComm, FBFsearch, FisHiCal, GeneticTools, geoCount, gMWT, GPvam, miscF, MVB, PedCNV, prospectr, RcppDE, RcppRoll, resemble, robustgam, zic
anametrix, aqr, bigml, CHCN, couchDB, crn, factualR, fds, jSonarR, kintone, notifyR, OIdata, ONETr, osmar, psidR, pumilioR, R4CouchDB, rAltmetric, rbiouml, rbitcoinchartsapi, RDSTK, RForcecom, rHpcc, Rjpstatdb, Rlabkey, rnbn, rneos, ROAuth, ropensecretsapi, rPlant, RSelenium, RYoudaoTranslate, scrapeR, shopifyr, sos4R, source.gist, SPARQL, sqlshare, streamR, SynergizeR, tibbrConnector, TR8, twitteR, VideoComparison, zendeskR
bear, biomod2, emme2, gcbd, Giza, intsvy, ivivc, lctools, metrumrg, multilevelPSA, PAWL, pedigree, PhaseType, profileR, rapportools, Rcell, RcmdrPlugin.EACSPIR, reportRx, RSAP, SmarterPoland, SMFI5, sorvi, stab, unmarked
afex, agridat, chemosensors, CINOEDV, COPASutils, ESGtoolkit, gapmap, gettingtothebottom, ggmcmc, ggparallel, ggRandomForests, MRMR, pbdPROF, pxR, rAltmetric, reshapeGUI, TriMatch, wordmatch
DeducerSpatial, divagis, landsat, M3, mgraph, micromap, ModelMap, modiscloud, move, OpenStreetMap, prevR, r2dRue, rangeMapper, spatial.tools, SPODT, UScancer
anchors, DiceOptim, FAiR, gamlss.util, KrigInv, multinomRob, RobPer
DivE, expp, geospacom, GISTools, Grid2Polygons, ibeemd, KappaV, pycno
abcdeFBA, alphashape3d, anacor, animalTrack, bios2mds, biplotbootGUI, BiplotGUI, bpca, brainR, cncaGUI, curvHDR, depth, DiceView, DirichletReg, dti, edrGraphicalTools, eegkit, etasFLP, FieldSim, foodweb, frontiles, fso, gdimap, geomorph, GeoXp, GGEBiplotGUI, grt, hgam, hiPOD, homals, hypervolume, kml3d, ks, longitudinalData, LSAfun, Maeswrap, MDSGUI, MSQC, msr, mtk, multibiplotGUI, nat, nat.nblast, nat.templatebrains, NeatMap, nonlinearTseries, optBiomarker, pavo, pca3d, plot3Drgl, qpcR, QuantifQuantile, R330, RadOnc, RcmdrPlugin.HH, RcmdrPlugin.TeachingDemos, Rpdb, shapes, Sim.DiffProc, smacof, sparr, sphereplot, tkrgl, tolerance, VDA, VecStatGraphs3D, YplantQMC
abcdeFBA, cosso, DAGGER, FRAPO, LPmerge, npbr, rorutadis, sdcTable
CITAN, fit4NM, gWidgets2RGtk2, gWidgetsRGtk2, PKgraph, PKmodelFinder, PoMoS, RGtk2Extras, tourrGui
bamdit, BANOVA, BaySIC, BEST, dcmle, metamisc, prevalence, PurBayes, R2jags, StatMethRank, zoib
arulesNBMiner, bartMachine, Crossover, edeR, ENMeval, extraTrees, gemtc.jar, glmulti, gMCP, helloJavaWorld, iplots, JGR, KoNLP, mallet, MSIseq, mwa, OpenStreetMap, OPI, rcdklibs, rChoiceDialogs, rCMA, rDNA, REPPlab, RH2, RHive, RImpala, rJavax, RJDBC, rJPSGCS, RJSDMX, rJython, RMOA, RMongo, RNCBIEUtilsLibs, RNetLogo, ror, RSQLServer, rsubgroup, SBRect, scagnostics, sjdbc, spcosa, streamMOA, venneuler, x.ent, xlsx, xlsxjars
couchDB, df2json, edeR, gooJSON, kintone, notifyR, RDSTK, Rfacebook, rJython, Rlabkey, rPlant, RYoudaoTranslate, SmarterPoland, sotkanet, source.gist, Storm, streamR, tibbrConnector, twitteR, zendeskR
audiolyzR, bigml, factualR, pxR, R4CouchDB, rAltmetric, rbiouml, rbitcoinchartsapi, rnbn, ropensecretsapi, rPython, RSelenium, RXKCD, SynergizeR, VideoComparison, WDI
AMOEBA, CNprep, MicSim, pbdBASE, pbdDEMO, pbdDMAT, pbdMPI, pbdSLAP, pmclust, sprint
ACTCD, CellularAutomaton, curvetest, DATforDCEMRI, GAD, GhcnDaily, NSA, R.oo
contrast, CPE, LCAextend, lordif, nonparaeff, riskRegression, Tsphere
BMA, ccaPP, chemometrics, compositions, cvTools, ddalpha, ForwardSearch, GWmodel, ltsbase, MBmca, muma, MVN, perry, qpcR, robCompositions, robfilter, RobPer, robust, RobustAFT, robustgam, robustHD, robustloggamma, robustX, rrcov, rrcovHD, rrcovNA, ssmrob
Comp2ROC, cvAUC, iFad, MEET, obliqueRF, pathClass, PredictABEL, RcmdrPlugin.ROC, rocc, sperrorest, subtype
mixsep, multibiplotGUI, RODBCext, RODM, soilDB, stacomirtools, toaster, TSodbc
CellularAutomaton, curvetest, DATforDCEMRI, GhcnDaily, NPCD, NSA, phylosim, plmDE, R.filesets, R.utils
bvpSolve, diffdepprop, diffEq, ecolMod, FME, kmc, mkin, pbatR, ReacTran, weightedScores
biotools, erpR, gamlss.demo, GUIDE, LinRegInteractive, MDSGUI, optBiomarker, RVideoPoker, soilphysics, vows
ada, adabag, chemometrics, DStree, fda.usc, gamlss.add, GPLTR, maptree, multiPIM, NHEMOtree, PSAgraphics, quint, REEMtree, rpart.plot, rpartScore, rpart.utils, sperrorest, SPOT, stima, survMisc, VSURF
biwt, DepthProc, FAiR, FRB, groc, muma, riv, RobAStBase, robCompositions, robust, robustfa, rrcovHD, rrcovNA
depmixS4, DiscreteInverseWeibull, DiscreteWeibull, DNAtools, GEVStableGarch, IDPSurvival, JOP, LDOD, robustDA, SemiMarkov
archivist, CITAN, filehashSQLite, gcbd, MUCflights, rangeMapper, refGenome, rplexos, RQDA, RSQLite.extfuns, SEERaBomb, snplist, sqldf, SSN, TSSQLite
discrimARTs, DistributionUtils, FKF, futile.paradigm, GeneralizedHyperbolic, gsDesign, permGPU, schwartz97, SkewHyperbolic, SoilR, VarianceGamma
aroma.affymetrix, aroma.cn, aroma.core, calmate, demi, ENiRG, GhcnDaily, HyPhy, MSIseq, NSA, PubBias, snplist, TBSSurvival, tmle.npvi
AER, CADFtest, COUNT, gcmr, gmm, inference, ivpack, list, mediation, mfx, midasr, nlrwr, party, RcmdrMisc, rdd, strucchange, vars, Zelig
bios2mds, DeducerSpatial, dslice, RSDA, statebins, TDA, TriMatch
bpca, CHsharp, diffEq, GPCSIV, homals, ISDA.R, lle, MDSGUI, poLCA, shapes, Sim.DiffProc, windex
bmem, dpa, faoutlier, qtlnet, semdiag, semGOF
CNOGpro, evobiR, MEET, mlgt, Peptides, rPlant
distrEllipse, distrSim, distrTEst, dse, EvalEst
ascrda, distr, ICEbox, lordif, modiscloud, plfm, polycor
alphahull, mvoutlier, RcmdrPlugin.seeg, seeg, StatDA, tmle.npvi
diagram, EMMAgeo, marelac, pathdiagram, ReacTran, sparsenet, spnet, symbols
adehabitat, aspace, BayesX, DSsim, fossil, RPyGeo, RSAGA
DynNom, enviPick, mirtCAT, phenology, plotSEMM, quipu, sglr, sparkTable
DAMisc, fpca, irtoys, magicaxis, mem, plmm, vioplot
bipartite, CCMnet, egonet, enaR, ndtv, NetCluster, Rambo, relevent, statnet, VBLPCM
BioPhysConnectoR, CePa, doSNOW, snowfall, snowFT
AMOEBA, bmem, classyfire, DLMtool, fugeR, GlobalDeviance, hsphase, kcirt, lle, MicSim, mlDNA, peperr, PIGE, R2GUESS, rsgcc, widals
adehabitat, adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, automap, biomod2, CAMAN, constrainedKriging, crawl, cshapes, DeducerSpatial, diseasemapping, dismo, divagis, DivE, ecospat, ENiRG, expp, FeedbackTS, fossil, frontiles, gdistance, geoR, georob, geospacom, geosphere, geospt, geostatsp, GISTools, Grid2Polygons, ibeemd, intamap, KappaV, landsat, lgcp, mapmisc, maptools, MBA, meteoForecast, modiscloud, move, MUCflights, plotGoogleMaps, polyCub, prevR, pycno, r2dRue, RandomFields, RapidPolygonLookup, raster, rgdal, rtop, rworldmap, rworldxtra, sampSurf, seg, soiltexture, sos4R, SpatialEpi, spatsurv, spdep, spgrass6, spgwr, splancs, spnet, SPODT, spsurvey, spTimer, SSN, stam, surveillance, tbart, trip, UScensus2000blkgrp, UScensus2000cdp, UScensus2000tract, UScensus2010, vec2dtransf, vegclust, vetools
chillR, copCAR, fields, gamlss.spatial, gamlss.util, GPFDA, latticeDensity, LatticeKrig, splm
cobs, maxent, McSpatial, modelfree, pheno, quantreg, REBayes, rexpokit, rms, RTextTools
adaptsmoFMRI, aoristic, dbmss, Digiroo2, dixon, DSpat, ecespa, ETAS, GriegSmith, highriskzone, latticeDensity, lgcp, ppmlasso, RcmdrPlugin.seeg, seeg, SGCS, siar, siplab, sparr, spatialsegregation, SpatialVx, stpp
AMOEBA, DCluster, Digiroo2, expp, GeoXp, ibeemd, latticeDensity, LS2Wstat, spatialprobit, splm
alphahull, aspace, dixon, DSsim, ecespa, latticeDensity, PVR, RCALI, soilprofile, stpp, stppResid
eegAnalysis, ForeCA, fractal, ifultools, sapa, wmtsa
complex.surv.dat.sim, cond, csampling, dglm, diffIRT, GHQp, joineR, lmeNB, marg, mcll, mixcat, MVR, nlreg, PCS, penalizedSVM, survsim
blkergm, ergm, ergm.count, ergm.userterms, latentnet, tergm
AnDE, CSS, enaR, eqs2lavaan, evobiR, exsic, FRESA.CAD, fslr, geotopbricks, gsDesign, hoardeR, KoNLP, LindenmayeR, mtk, neuroim, PepPrep, pxR, quipu, rsgcc, ryouready, sdcTable, seqminer, sqlutils, ssh.utils
diversitree, mvMORPH, ouch, pomp, TreePar
ICS, lavaan.survey, mapStats, MNM, MOJOV, odfWeave.survey, pedgene, relaimpo, samplingbook, sptm, ssfit, StatMatch, svyPVpack, twang, VIMGUI
AER, ahaz, AIM, BaM, bayesSurv, BGPhazard, BMA, BSGW, bshazard, carcass, changeLOS, cmprsk, CNVassoc, coin, compound.Cox, concreg, cond, CoxBoost, coxinterval, coxme, coxphf, coxphw, CoxRidge, coxrobust, CPE, crossmatch, crrSC, csampling, currentSurvival, doBy, DPpackage, DTR, dynsurv, eha, epicalc, epiR, etm, fitdistrplus, flexsurv, frailtyHL, frailtypack, FRESA.CAD, gamlss.cens, gamlss.nl, gbm, geneSignatureFinder, ggRandomForests, glmpath, glmperm, globalboosttest, GSAgm, gte, gtx, HapEstXXR, haplo.ccs, Hmisc, IDPSurvival, InferenceSMR, intcox, interval, invGauss, jackknifeKME, JM, JMbayes, joineR, JointRegBC, kaps, kin.cohort, km.ci, kmconfband, kmi, lava.tobit, lazyWeave, lcmm, LogicReg, luca, marg, MetaDE, mfp, mixPHM, MMMS, mRMRe, MRsurv, mstate, multcomp, multipleNCC, NADA, NestedCohort, nlreg, NPHMC, nricens, NSM3, OIsurv, OrdFacReg, OutlierDC, p3state.msm, packHV, paf, pamr, papeR, parfm, partDSA, pbatR, penalized, peperr, permGPU, PHeval, phmm, PIGE, plRasch, prognosticROC, PwrGSD, QoLR, QualInt, RcmdrPlugin.coin, RcmdrPlugin.survival, relsurv, remix, risksetROC, rms, RobustAFT, ROC632, ROCt, RPCLR, rsig, saps, season, seawaveQ, seqDesign, seqMeta, SIMMS, SIS, skatMeta, smcure, smoothHR, smoothSurv, SNPassoc, sp23design, spatsurv, speff2trial, SPREDA, sptm, STAR, stepp, superpc, surv2sampleComp, survAccuracyMeasures, survAUC, survC1, survexp.fr, Survgini, survIDINRI, survivalMPL, survMisc, SurvRegCensCov, survSNP, TBSSurvival, threg, timereg, tnet, TraMineRextras, TwoStepCLogit, uniCox
RSeed, sybilccFBA, sybilcycleFreeFlux, sybilDynFBA, sybilEFBA, sybilSBML
AnthropMMD, biplotbootGUI, BiplotGUI, cncaGUI, forensim, MDSGUI, mixsep, SeqFeatR, SRRS, stosim
fArma, fAsianOptions, fAssets, fBasics, fBonds, fCopulae, fExoticOptions, fExtremes, fGarch, fImport, fMultivar, fNonlinear, fOptions, forecast, fractalrock, fRegression, fTrading, fUnitRoots, TimeProjection, timeSeries
caschrono, fArma, fAsianOptions, fAssets, fBasics, fBonds, fCopulae, fExoticOptions, fExtremes, fGarch, fImport, fMultivar, fNonlinear, fOptions, FRAPO, fRegression, fTrading, fUnitRoots, QRM
adehabitat, biotools, biplotbootGUI, BiplotGUI, cncaGUI, ConvergenceConcepts, FFD, fisheyeR, fit4NM, forensim, GGEBiplotGUI, GUIDE, MDSGUI, migui, multibiplotGUI, OligoSpecificitySystem, onemap, PKmodelFinder, RHRV, rriskDistributions, RVideoPoker, SyNet, VIMGUI
DeducerText, maxent, RcmdrPlugin.temis, smdc, tm.plugin.dc
fExpressCertificates, imputeLCMD, propagate, spatialprobit, spfrontier, uskewFactors
BayesCR, Brq, hierarchicalDS, Rsolnp, spate, stocc, zCompositions
TScompare, TSfame, TSgetSymbol, TShistQuote, TSjson, TSMySQL, TSodbc, TSPostgreSQL, TSSQLite, TSxls, TSzip
acp, AID, CADFtest, earlywarnings, egcm, expsmooth, fma, fpp, Mcomp, nonlinearTseries, RcmdrPlugin.epack, TSA
dualScale, ENmisc, miP, RcmdrPlugin.mosaic, RcmdrPlugin.SM, STEPCAM, vcdExtra, YaleToolkit
analogue, BAT, betaper, bipartite, biplotbootGUI, blender, cocorresp, CommunityCorrelogram, dave, FD, FreeSortR, GUniFrac, iDynoR, isopam, loe, metacom, mpmcorrelogram, palaeoSig, paleoMAS, PCPS, picante, RAM, rareNMtests, recluster, rich, rioja, simba, SYNCSA, vegan3d, vegclust
Bayesthresh, BSquare, EffectStars, ExomeDepth, GEVcdn, iteRates, lawstat, MiClip, multgee, ordBTL, pheno2geno, prob, ZeligChoice
adwave, brainwaver, RHRV, W2CWM2C, WaveCD, wavemulcor
BHMSMAfMRI, binhf, costat, CVThresh, haarfisz, locits, LS2W, refund.wave, waveband
aidar, anametrix, apsimr, AWS.tools, compareODM, CSS, EcoHydRology, EcoTroph, EIAdata, gnumeric, googlePublicData, grImport, hoardeR, iDynoR, metrumrg, mseapca, mtk, MUCflights, odfWeave, ONETr, osmar, pmml, pumilioR, qat, R4CDISC, RDML, readMLData, readODS, rentrez, review, rFDSN, RFinanceYJ, RForcecom, rgexf, rHpcc, Rjpstatdb, rneos, RSDA, RSelenium, RWeather, RXMCDA, scrapeR, sos4R, SPARQL, spgrass6, StatDataML, symbolicDA, TR8, waterData, XML2R
A3, AmpliconDuo, bayesMCClust, BrailleR, compareGroups, DAMisc, DATforDCEMRI, etable, FactoClass, fifer, gsDesign, hierarchicalDS, IndependenceTests, klausuR, LeLogicielR, MAMA, multilevelPSA, PF, PIGE, PKtools, quipu, reporttools, rplotengine, SciencesPo, sdcMicro, SeleMix, seqDesign, SharpeR, stacomirtools, surveillance, survSNP, TableMonster, twang
aqr, bsts, cotrend, dynatopmodel, EIAdata, eventstudies, FinancialInstrument, hydroTSM, IBrokers, PerformanceAnalytics, quantmod, RcmdrPlugin.epack, RcppXts, RFinanceYJ, rts, TTR, YieldCurve
AER, AutoSEARCH, betategarch, bsts, changepoint, dyn, dynlm, egcm, EIAdata, EloRating, Evapotranspiration, eventstudies, fast, FinancialInstrument, FinTS, FLIM, forecast, fts, fxregime, gamlss.util, geotopbricks, gets, glogis, hydroGOF, hydroTSM, IBrokers, lgarch, lmtest, mar1s, measuRing, meteoForecast, Modalclust, party, phenology, PortRisk, QoLR, quantmod, RcmdrPlugin.temis, rdatamarket, RelValAnalysis, RJSDMX, rts, sde, sirad, solaR, StreamMetabolism, strucchange, tgram, VideoComparison, wq, xts, yuima
arm, bayesPop, biomod2, DMwR, gdimap, geostatsp, glmmBUGS, latentnet, mi, ncdf4.helpers, ncdf.tools, OpenRepGrid, pcalg, quantspec, R2jags, Rcmdr, RcmdrMisc, RCMIP5, RItools, RSDA, secr, secrdesign, SparseTSCGM, spatial.tools, spatstat, spectral.methods, treeclim
BTSPAS, ChainLadder, eggCounts, PResiduals, ReliabilityTheory
ads, clusterSim, entropart, memgene, Momocs, msap, MVPARTwrap, phylobase, PopGenReport, poppr, RVAideMemoire, symbolicDA, virtualspecies
gfcanalysis, phytools, spdynmod, stream, TED
adegenet, adephylo, betapart, BoSSA, expands, gamclass, geomorph, GrammR, kdetrees, lefse, Momocs, msap, outbreaker, OutbreakTools, PCPS, phylobase, phyloland, PIGShift, poppr, primerTree, rdryad, Reol, sidier, SigTree, stylo, taxize
carcass, CosmoPhotoz, eeptools, hbsae, list
aemo, AntWeb, bold, broman, datalist, dplyr, ecoengine, ggvis, prettyunits, rbison, repra, reutils, rfisheries, rgbif, rjstat, rnoaa, rplexos, rplos, rsunlight, solr, spocc, taxize
gmailr, MALDIquantForeign, R.devices, readMzXmlData, RSiteCatalyst, sendmailR
aftgee, antitrust, CatDyn, DSBayes, orsk
BatchExperiments, fail, metagen, parallelMap, ParamHelpers, rsig, tspmeta
caTools, HierO, IgorR, nhlscrapr, oro.nifti
bandit, bootLR, BSagri, Causata, circular, complmrob, crs, deming, DescTools, eggCounts, energy, frair, gsg, GSIF, ic.infer, Kendall, lga, metaplus, mfblock, MplusAutomation, multiwayvcov, np, npRmpi, opm, pairwiseCI, pgirmess, plsRbeta, plsRglm, polyapost, pubmed.mineR, qat, R2OpenBUGS, referenceIntervals, refund, RVAideMemoire, SCBmeanfd, sensitivity, shotGroups, SpatialVx, spdep, sprint, TraMineR, treeclim, xergm, yhat
MergeGUI, MissingDataGUI, R2STATS, SeqGrapheR, x12GUI
anacor, apt, bayesLife, BCA, caret, drsmooth, dynlm, easyanova, ez, FactoMineR, fxregime, gamclass, lessR, mi, miceadds, micEconCES, mixlm, NHPoisson, panelAR, pedometrics, rasclass, Rchoice, RcmdrPlugin.BCA, referenceIntervals, rockchalk, rpubchem, RVAideMemoire, sdcMicro, simPH, sjPlot, VIM
bdynsys, climdex.pcic, diveMove, gplots, paleofire, rmarkdown, RTextTools
BatchExperiments, BatchJobs, BBmisc, mlr, parallelMap, ParamHelpers
data.table, Dominance, ncdf.tools, qdap, qdapTools, redcapAPI, rugarch, sqldf
classifly, classInt, clValid, DMwR, e1071, fpc, ipred, mlearning, stylo, supclust
aoristic, FAOSTAT, mapStats, plotKML, questionr, rangeMapper, tmap
agricolae, Anthropometry, aqp, clue, comato, CORElearn, DESnowball, disclapmix, EMA, FactoMineR, fpc, geophys, GrammR, Hmisc, openair, PReMiuM, rainbow, recluster, relations, sdcMicro, semiArtificial, SemiPar, SensoMineR, seriation, sharpshootR, skmeans, spikeSlabGAM, StatDA, stream, TcGSA
arm, bayesLife, bayesmix, BayesSingleSub, bayesTFR, BayesX, Bchron, bfa, BRugs, btf, BTSPAS, CARBayes, CARBayesST, conting, dcmle, EasyMARK, eiwild, ergm, geiger, geoBayes, HLSM, hSDM, kobe, latentnet, list, marked, mixAK, MplusAutomation, MSBVAR, networkTomography, plotMCMC, polySegratioMM, pomp, R2jags, R2OpenBUGS, r4ss, RMark, runjags, SAVE, scape, sirt, slfm, spdep, spikeSlabGAM, tdm, tergm, xergm
afex, NSM3, pairwiseCI, party, shotGroups
anacor, BayesX, BiplotGUI, extracat, forecast, ftsa, gdimap, ggthemes, gpairs, HH, JBTools, mapStats, mcmcplots, metafolio, munsell, NMF, OpenRepGrid, plotKML, qgraph, rainbow, RandomFields, semPlot, seriation, SGP, simsalapar, smacof, TIMP, treemap, vcd, Wats
DESnowball, DoE.base, isocir, klaR, lllcrc, nettools, qualCI, ReliabilityTheory, sirt, survMisc
apt, copulaedas, HAC, nacopula, PBC, VineCopula
BMhyd, cape, corHMM, list, lymphclon, MCMCglmm, OUwie, parma, pcalg, perARMA, qgraph, r4ss, relaimpo, semPlot, sparsediscrim
calibrator, dbmss, fMultivar, GB2, hyperdirichlet, np, npRmpi, planar, vines
aLFQ, benford.analysis, Causata, DataCombine, eeptools, FAOSTAT, freqweights, gems, IAT, Kmisc, lar, lllcrc, metaMix, miscset, optiRum, pxweb, qdapTools, randomNames, RAPIDR, RbioRXN, repra, rfisheries, rgauges, rgbif, rlist, rnoaa, rplexos, rplos, SGP, simPH, spocc, statar, taxize, treebase, treemap
BatchExperiments, BatchJobs, dplyr, filehashSQLite, opm, refGenome, RObsDat, rplexos, RQDA, RSQLite, sqldf, sqliter, TSdbi, TSfame, TSgetSymbol, TShistQuote, TSjson, TSMySQL, TSodbc, TSPostgreSQL, TSsql, TSSQLite, TSxls, TSzip, UPMASK
asbio, AssetPricing, bdynsys, capm, EpiDynamics, EpiModel, flexsurv, geiger, ivivc, mkin, PKfit, pomp, spdynmod, tdm, TIMP
archivist, BatchJobs, Crossover, devtools, diskmemoiser, downloader, dplR, ezsim, FSelector, geiger, ggplot2, harvestr, htmltools, httr, knitcitations, knitr, MALDIquantForeign, memoise, MTurkR, nat, NMF, OpasnetUtils, pander, pkgmaker, Rbitcoin, Rcell, RCMIP5, RcppOctave, readMzXmlData, repmis, R.filesets, rngtools, roxygen2, RSiteCatalyst, shiny, stashR, swirl, testthat
ecospat, GSIF, plotKML, PopGenReport, virtualspecies
distrDoc, logcondens.mode, RobLox, RobLoxBioC, ROptRegTS
EasyMARK, enpls, EpiModel, GENLIB, Morpho, NMF, opentraj, parboost, randomUniformForest, RRreg, SGP, spatial.tools, StAMPP, WGCNA
aemo, COPASutils, DataCombine, ecoengine, freqweights, gender, ggvis, peptider, qdap, rbison, repra, rPref, simPH, statar, tidyr, vdmR
bindata, cati, classInt, clusterfly, clusterSim, Deducer, dpcR, hda, hybridEnsemble, hydroTSM, LOST, mistral, mlearning, optBiomarker, ppiPre, rasclass, RcmdrMisc, RObsDat, RTextTools, sdcMicro, sprint, StatDA, stylo, symbolicDA, tableone, TTAinterfaceTrendAnalysis, userfriendlyscience, VIM
Bchron, FactoMineR, flexCWM, qgraph, SciViews, soc.ca
carcass, corHMM, lymphclon, markovchain, msm, popdemo, rags2ridges, rugarch, SCGLR, switchnpreg
lefse, MVPARTwrap, StableEstim, TTAinterfaceTrendAnalysis, userfriendlyscience
astrochron, BayesLCA, bipartite, biwavelet, CARrampsOcl, dynatopmodel, earlywarnings, etasFLP, geospt, hglasso, hht, lgcp, LICORS, ltsk, ModelMap, popsom, qat, ramps, rNOMADS, RsimMosaic, rworldmap, spatsurv, TED, tmap, topologyGSA
bigrf, blowtorch, boostr, caret, Causata, EasyMARK, enpls, EpiModel, ezsim, gdalUtils, GENLIB, JBTools, lint, Morpho, mvcwt, NMF, opentraj, pec, polywog, primerTree, prospectr, randomUniformForest, RCMIP5, resemble, RRreg, RSNPset, SGP, siRSM, spacom, spectral.methods, StAMPP, taxize, TED, tsDyn, vardpoor, WGCNA, ykmeans
DDIwR, Deducer, fSRM, Hmisc, lessR, maptools, mi, miceadds, pmg, psData, RcmdrPlugin.BCA, rio, sdcMicroGUI, sjPlot, spsurvey, userfriendlyscience, VIMGUI, YourCast
AER, bdynsys, betareg, crch, ExtremeBounds, fdaMixed, frontier, glmx, greport, growcurves, ivfixed, lfe, mnlogit, moult, plsRbeta, polywog, PResiduals, psychomix, psychotree, sampleSelection, SCGLR, tosls
biomod2, bootfs, bst, bujar, imputeR, inTrees
BioGeoBEARS, comato, Dominance, ENiRG, gmodels, gplots, lessR, likeLTD, lmms, LOST, MIPHENO, NetComp, polySegratio, qat, qdap, QTLRel, rAvis, RbioRXN, rdryad, rtematres, simSummary, TSxls, TSzip, vardpoor
betapart, DepthProc, gdimap, hypervolume, pavo, pdfCluster, spaMM
birdring, diveMove, gfcanalysis, lakemorpho, letsR, marmap
gstudio, OutbreakTools, RAM, spocc, toaster
adegenet, alm, antitrust, BBEST, bdscale, bdvis, bear, Biograph, BioStatR, blowtorch, bmmix, BTSPAS, capm, Causata, choroplethr, classify, classyfire, clhs, complmrob, confidence, cooccur, cosinor, CosmoPhotoz, cplm, cutoffR, dcmr, DescribeDisplay, DFIT, diveRsity, dsm, dynsim, dynsurv, EasyHTMLReport, EpiDynamics, erer, extracat, ez, ezsim, FAOSTAT, FinCal, fSRM, GCD, gfcanalysis, GGally, ggdendro, ggsubplot, gitter, GraphPCA, growcurves, growfunctions, HLMdiag, IAT, kdetrees, kobe, lmms, marked, metagen, metaMix, Methplot, MGLM, microbenchmark, mizer, Mobilize, multiDimBio, networkreporting, ngramr, NMF, nullabor, OpasnetUtils, pa, paleofire, plot2groups, PopGenReport, poppr, predictmeans, PReMiuM, primerTree, qgraph, rags2ridges, randomUniformForest, rbison, Rchoice, repra, rfigshare, rfisheries, rfPermute, rgauges, rgbif, rinat, rnoaa, robustlmm, RPPanalyzer, rvertnet, rWBclimate, SCGLR, sdmvspecies, simPH, SixSigma, sjPlot, sorvi, statar, structSSI, strvalidator, TcGSA, toaster, TreatmentSelection, treeclim, treemap, tvm, vdmR, Wats, wppExplorer
c060, Causata, FADA, FindIt, hybridEnsemble, imputeR, IsingFit, MGSDA, MPAgenomics, mpath, parboost, polywog, refund, RSDA, rsig, RTextTools, stm, VIM
Compind, mirt, OpenRepGrid, qmethod, TAM
bootfs, ddepn, GMD, JBTools, lmerTest, lmms, matie, msarc, MultiPhen, plotMCMC, qat, r4ss, RAM, RPPanalyzer, sesem, smart, TcGSA, TIMP, TopKLists, xhmmScripts
NMF, playwith, SGP, simsalapar, tmap, treemap
CosmoPhotoz, dynsim, fSRM, gdimap, granovaGG, miscset, mosaic, qdap, RAM, rbison, rfPermute, rgauges, simPH, soc.ca, spikeSlabGAM, strvalidator, survMisc, YourCast
automap, GSIF, hydroTSM, intamap, intamapInteractive, plotKML, psgp, rtop
GGally, ggplot2, ggtern, RcmdrPlugin.KMggplot2, strvalidator
alleHap, apmsWAPP, bootfs, BradleyTerry2, CoClust, CoImp, conting, cooptrees, datautils, eiwild, gdata, gplots, LogicForest, MarkowitzR, metaMix, NSM3, paleobioDB, paleofire, PolyPatEx, polySegratioMM, r4ss, randomUniformForest, RankAggreg, sirt, smart, ss3sim, STEPCAM, TcGSA
GrammR, playwith, R2STATS, RQDA, SeqGrapheR, strvalidator, TR8
GrammR, PKgraph, R2STATS, SeqGrapheR, strvalidator
aqp, bdynsys, ChainLadder, choroplethr, Compind, datacheck, DeducerSpatial, HistogramTools, hydroPSO, lmerTest, mapStats, MVPARTwrap, NSM3, qgraph, rags2ridges, RcmdrMisc, RDS, remix, RPPanalyzer, scape, sdcMicroGUI, SDD, sharpshootR, smacof, soilDB, statar, summarytools, survMisc, TopKLists, TTAinterfaceTrendAnalysis, VIMGUI, WGCNA, wppExplorer, x12GUI, xpose4
opencpu, rfigshare, RGA, servr, shiny, tabplotd3
alm, AntWeb, archivist, aRxiv, bold, devtools, ecoengine, enigma, gender, gmailr, imguR, knitcitations, miniCRAN, ngramr, opencpu, pdfetch, pollstR, primerTree, pushoverr, pvsR, pxweb, rbhl, rbison, rebird, redcapAPI, REDCapR, rentrez, repmis, rfigshare, rfisheries, RGA, rgauges, rgbif, rinat, RNeXML, rnoaa, rplos, RSiteCatalyst, rsnps, rsunlight, rvertnet, rWBclimate, SocialMediaMineR, solr, spocc, swirl, taxize, translateR, yhatr
adegenet, arulesViz, audited, bipartite, BoolNet, bootfs, cape, causaleffect, CIDnetworks, clickstream, comato, DCGL, diffusionMap, Dominance, fbRanks, FrF2, fuzzyMM, gemtc, gRain, gRbase, gRim, HPOSim, hypervolume, intergraph, kknn, lvm4net, markovchain, MatchingFrontier, matie, miniCRAN, mixOmics, nat, netClass, nettools, networkTomography, outbreaker, pcalg, phangorn, poppr, ppiPre, qdap, qgraph, rags2ridges, RDS, rPref, RQDA, semPlot, SeqGrapheR, sharpshootR, sidier, sirt, smart, SSN, structSSI, synbreed, tmap, treemap, VineCopula, xergm
blowtorch, boostr, doRNG, foreach, itertools2, lgcp, polywog, prospectr, randomUniformForest, rcdk, resemble, scidb, SGP, spacom, spatsurv, turboEM
geomorph, gitter, HiveR, imguR, Momocs, qgraph, rcicr, readbitmap, RsimMosaic, StereoMorph, zooimage
alm, bold, devtools, ecoengine, enigma, gender, ggvis, gmailr, httr, opencpu, pdfetch, polidata, pollstR, rbison, RGA, rinat, rjstat, rlist, rmongodb, rnoaa, RSiteCatalyst, rsunlight, rWBclimate, SGP, SocialMediaMineR, taxize, x.ent, yhatr
bmrm, COPASutils, fpc, kernelFactory, LinearizedSVR, mistral, pi0, plsRcox, rminer, Synth
BiplotGUI, diveMove, earlywarnings, gamclass, GeoXp, gplots, hdrcde, MSBVAR, prodlim, r2d2, SCBmeanfd, SensoMineR, shotGroups, spd, TSclust
BEQI2, checkpoint, confidence, COPASutils, interAdapt, Kmisc, knitrBootstrap, opencpu, Rcmdr, reports, rite, rmarkdown, ucbthesis, userfriendlyscience
birdring, hdrcde, logcondens, rainbow, rugarch
futile.logger, futile.matrix, lambda.tools, tawny, tawny.types
aLFQ, analogue, ape, aqp, asbio, automap, bbmle, boolean3, c060, cg, ChainLadder, ChemoSpec, classify, comato, copula, Cprob, cvTools, DBKGrad, dcmle, DepthProc, dplR, drc, easingr, eiwild, EQL, etm, FactoMineR, faoutlier, fastR, FitAR, gamclass, GENLIB, Giza, Gmisc, gpairs, GPfit, greport, gstat, hexbin, hydroPSO, influence.ME, Kmisc, ldbounds, lga, lme4, locfit, maptools, Matrix, mboost, MplusAutomation, MSBVAR, mvna, mycor, nlme, openair, opm, OUwie, paleofire, pedometrics, plotGoogleMaps, plotMCMC, polySegratioMM, PopGenReport, predictmeans, psychomix, qicharts, R2STATS, rangeMapper, refund, RItools, rminer, RobLox, RobLoxBioC, robustlmm, RPPanalyzer, Rssa, runjags, scape, SetMethods, sharpshootR, SixSigma, sp, spacetime, SSN, stressr, stylo, synbreed, tiger, trajectories, tripEstimation, VBmix, visreg, x12GUI, YourCast, zoo
DAAG, easingr, gamclass, greport, Hmisc, mosaic, openair, pedometrics, qicharts, R2STATS, RcmdrPlugin.temis, sharpshootR, stressr
faoutlier, matrixpls, NlsyLinks, qgraph, semPlot, sesem, sirt, userfriendlyscience
FactoMineR, FitAR, HH, lessR, meifly, mixlm, RcmdrPlugin.HH
DoE.wrapper, EasyABC, GPfit, hydroPSO, metagen
clusterPower, ez, lmSupport, mbest, mi, miceadds, mixlm, multiDimBio, R2STATS, refund, rockchalk, RVAideMemoire, spacom, xergm
betareg, chipPCR, dynlm, earlywarnings, fRegression, georob, glmx, mlogit, mnlogit, Rchoice, termstrc, treeclim
CoImp, hdrcde, KATforDCEMRI, LICORS, paleofire, RDS
aemo, alm, aoristic, apsimr, Biograph, dataRetrieval, decctools, ecoengine, iki.dataclim, pdfetch, plusser, primerTree, RefManageR, rgauges, rnoaa, rplexos, rplos, spocc, ss3sim, statar, sweidnumbr, TTAinterfaceTrendAnalysis, vetools, Wats
bgeva, GMMBoost, list, netmeta, refund, rlme, SemiParBIVProbit, SemiParSampleSel
dendextend, dotenv, dplyr, ggvis, gmailr, prettyunits, rex, spark
bdvis, etasFLP, letsR, OIdata, r4ss, rgbif, rinat, rvertnet, SpatialVx, swfscMisc
BayesX, capm, dynatopmodel, ecospat, eeptools, letsR, lgcp, opentraj, plotGoogleMaps, rangeMapper, rAvis, rbison, rgbif, rnoaa, rworldmap, SpatialEpi, spocc, SSN, trip, vdmR, vetools
BEQI2, confidence, datamart, Kmisc, knitr, knitrBootstrap, Rcmdr, rite
ACNE, adegenet, aftgee, agricolae, agsemisc, ALKr, analogue, antitrust, AppliedPredictiveModeling, aroma.affymetrix, bayesTFR, bayou, bbmle, Bchron, bdynsys, BEDASSLE, biomod2, bipartite, BiplotGUI, blockTools, boral, calmate, car, carcass, CCTpack, CDM, cg, ChainLadder, ChemoSpec, chipPCR, chords, class, clustMD, CollocInfer, CommonTrend, Compind, CorReg, COUNT, Crossover, cSFM, DESnowball, distrDoc, DoE.base, drfit, dynsim, EasyABC, EasyMARK, EBS, elliptic, EMA, EnviroStat, eRm, eventInterval, ez, FactoMineR, FAOSTAT, faoutlier, fAssets, flam, fpc, freestats, funreg, gamclass, gamlss, geiger, gems, ggdendro, ggplot2, ggtern, glarma, glmmBUGS, glmx, gMCP, gmodels, gnm, gpairs, GPFDA, GrammR, groc, gsarima, hddplot, heplots, HLMdiag, HLSM, hmmm, hypervolume, ICsurv, intamap, ipred, kobe, lavaan, lavaan.survey, lcd, limSolve, list, lme4, lmerTest, loa, LOST, lymphclon, MatchingFrontier, matrixpls, meifly, metafolio, metagen, metRology, MGSDA, mi, mice, micEconSNQP, midasr, MIICD, MLDS, mlearning, mlogit, mosaic, mpath, MST, multiDimBio, multigroup, mvabund, nbpMatching, ndl, ndtv, nsgp, nullabor, optBiomarker, ordinal, pairwiseCI, pedometrics, pensim, pitchRx, plm, plsRbeta, pmg, PopED, popgraph, PPtree, qcc, r2d2, R2STATS, random.polychor.pa, rareGE, RcmdrMisc, refund, relsurv, RFOC, rlme, rmgarch, robustHD, rockchalk, rSFA, RVAideMemoire, sampling, ScreenClean, sdcMicro, secr, semiArtificial, SemiPar, SemiParBIVProbit, sensR, seriation, shrink, signal, simPH, siRSM, sirt, sjPlot, SMPracticals, SNPMClust, sortinghat, spaMM, SparseTSCGM, SpatialEpi, SpatioTemporal, spdep, spikeSlabGAM, spls, spsurvey, SSN, StableEstim, StatDA, STEPCAM, stochprofML, stream, strum, surveillance, SVMMaj, synbreed, tigerstats, TIMP, trip, tsDyn, uniReg, UPMASK, varComp, vardpoor, vcd, vcdExtra, VIM, VineCopula, VLMC, WRS2
cwm, expands, KATforDCEMRI, markovchain, perARMA, rcicr, rwt
afex, biom, btf, BTYD, cape, ChainLadder, coalescentMCMC, CollocInfer, comato, copula, CorReg, CRF, Crossover, diffusionMap, dmt, dnet, doBy, ergm, eRm, expoRkit, ez, FDboost, GENLIB, gMCP, gnm, gRbase, growfunctions, hbsae, hisemi, HLMdiag, igraph, influence.ME, INLABMA, irlba, IsingFit, kknn, lavaan.survey, lgcp, LICORS, lsmeans, marked, markovchain, mboost, metaMix, mgcv, mi, midasr, mistral, mme, Morpho, moult, netClass, nettools, neuroim, optBiomarker, ordinal, pbkrtest, PEIP, perARMA, phangorn, pi0, polywog, popgraph, qgraph, QuasiSeq, rARPACK, RcppEigen, refund, rmgarch, RSiena, rsig, scam, SCGLR, scidb, ScreenClean, SemiParBIVProbit, SemiParSampleSel, seqMeta, sirt, smart, spacom, spaMM, spatsurv, spfrontier, sphet, SPMS, stm, superbiclust, surveillance, synlik, threeboost, trustOptim, tsDyn, varComp, xergm, xgboost
BEDASSLE, ExtDist, ICsurv, MarkowitzR, matrixpls, PCDSpline, RMark, sem
ACNE, aroma.affymetrix, aroma.cn, aroma.core, bdynsys, bingat, calmate, Luminescence, MFHD, PSCBS, randomizationInference, refund, SemiParBIVProbit, statar, stm, WGCNA
GEOmap, rNOMADS, Rquake, RSurvey, StatDA
Bchron, ChemoSpec, clustMD, CorReg, expands, flexCWM, fpc, msir, semiArtificial, SNPMClust, VBLPCM, vscc
BayesLCA, BayesSingleSub, coarseDataTools, HWEBayes, spikeSlabGAM
analogue, cSFM, demography, drsmooth, ez, FDboost, ForeCA, fRegression, funreg, gamclass, groc, gsg, landsat, mrds, openair, opm, pitchRx, QRM, QuasiSeq, refund, rlme, RLRsim, secr, sesem, simPH, slp, spatstat, spsmooth, StatDA, tripEstimation, tsDyn, vows
DBKGrad, FatTailsR, ivivc, PKfit, Rquake, TIMP
censReg, EWGoF, frontier, LOST, micEcon, micEconAids, micEconCES, micEconSNQP, mvProbit, sampleSelection, yhat
bayou, cSFM, csn, EasyABC, FADA, flexCWM, HiDimMaxStable, lavaan, mixAK, phytools, pmcgd, sn, tsDyn, VBmix
betareg, coin, eaf, flexmix, gcExplorer, mobForest, PSAboot, psychomix, topicmodels
Biograph, CIDnetworks, clustMD, gems, iBATCGH, optBiomarker, phytools, RMark
cg, Crossover, Deducer, dpcR, drsmooth, gMCP, lsmeans, MCPAN, mutoss, RcmdrPlugin.HH, rms, RVAideMemoire, sensR, SimComp, TTAinterfaceTrendAnalysis
asbio, BayesFactor, BayesSingleSub, bayesTFR, bcpmeta, bindata, binMto, boolean3, boral, BSagri, CALIBERrfimpute, CCTpack, ChemoSpec, CIDnetworks, clinfun, clusteval, clustMD, coin, conting, copula, copulaedas, CorReg, CosmoPhotoz, DFIT, drsmooth, ETC, flexsurv, fMultivar, fpc, freestats, funreg, geiger, gMCP, growfunctions, gsg, hmmm, HWEBayes, hyperdirichlet, ic.infer, ifa, intamap, interAdapt, latentnet, LICORS, list, MARSS, matie, maxstat, MCPAN, mcprofile, MESS, mistral, mratios, MSBVAR, msm, MTS, multicon, multivator, nonnest2, OPDOE, PIGShift, plsRbeta, plsRglm, pomp, PopED, protiq, random.polychor.pa, rpf, rrcov, SimComp, simexaft, sirt, SmoothHazard, sns, sortinghat, sparsediscrim, SparseTSCGM, spikeSlabGAM, SQDA, TAM, tsbridge, uniReg, varComp, VineCopula
bingat, intergraph, sidier, SparseTSCGM, xergm
agricolae, ape, arm, BayesLCA, caret, cg, cplm, dlnm, drc, dsm, easyanova, eba, FindMinIC, georob, GSIF, GxM, investr, lme4, lmms, lqmm, MARSS, MultiSV, nlmeU, OPDOE, opm, pgirmess, plm, PopED, psychometric, rareGE, refund, rlme, rms, robustlmm, secr, SemiPar, SMPracticals, spacom, spaMM, spdep, sphet, tergm, TTAinterfaceTrendAnalysis, urca, varComp, vcrpart
NLPutils, openNLP, qdap, tm.plugin.alceste, tm.plugin.dc, tm.plugin.europresse, tm.plugin.factiva, tm.plugin.lexisnexis, tm.plugin.mail, tm.plugin.webmining
biomod2, car, CoImp, flexmix, forecast, fRegression, gnm, Hmisc, hybridEnsemble, ipred, mi, mice, mlearning, oblique.tree, pvsR, rasclass, RcmdrPlugin.BCA, rminer, RTextTools, semiArtificial, spectral.methods, spls, tsDyn, VIM
Anthropometry, FDboost, hybridEnsemble, mboost, smacof, TIMP
antitrust, bbmle, BMhyd, boolean3, CIDnetworks, condGEE, corHMM, DoubleExpSeq, ExtDist, finiteruinprob, flexCWM, GB2, geostatsp, GPvam, gsg, lava, lmerTest, marked, metaplus, metRology, mets, midasr, mirt, mpath, nlWaldTest, OUwie, phytools, pi0, Renext, robustvarComp, rugarch, sdprisk, sensR, sn, StableEstim, stochprofML, SurvRegCensCov, vcrpart
BioGeoBEARS, boolean3, CatDyn, ExtDist, invGauss, marked, mrds, Synth
dti, gdimap, oro.dicom, oro.pet, RNiftyReg
bipartite, cwm, expands, RAM, randomizationInference, VdgRsm
coalescentMCMC, corHMM, OUwie, paleotree, phytools, poppr, RADami, recluster, SeqFeatR
aqp, asbio, bdvis, bear, BioGeoBEARS, HTSCluster, JBTools, KernSmoothIRT, LogicForest, marmap, mutoss, ncdf.tools, NPCirc, opm, PCPS, phytools, plotKML, plotSEMM, PReMiuM, qdap, Rchoice, rminer, xhmmScripts, yhat
ChemoSpec, crmn, EasyABC, enpls, groc, imputeR, miceadds, plsRcox, resemble, rrcovHD, soil.spec, spls
acs, aLFQ, alm, AntWeb, AppliedPredictiveModeling, aqp, BatchExperiments, bayesPop, bdvis, benchmark, BEQI2, Biograph, biom, bold, BTSPAS, caret, cda, ChemoSpec, choroplethr, classifly, classify, clhs, clickstream, clusterfly, coefplot, confidence, d3Network, dcmr, decctools, Deducer, DescribeDisplay, dynsurv, ecoengine, enigma, EpiContactTrace, extracat, ez, ezsim, FAOSTAT, freqweights, fSRM, GDELTtools, gems, geospt, gfcanalysis, GGally, ggmap, ggplot2, ggsubplot, ggtern, gProfileR, granovaGG, harvestr, HiveR, HLMdiag, IsingSampler, kimisc, kobe, LakeMetabolizer, learningr, lint, llama, lllcrc, lsmeans, lubridate, marked, meifly, metafolio, metagen, MGLM, mizer, morse, mosaic, MplusAutomation, mpoly, nat, nat.nblast, networkreporting, networkTomography, ngramr, nullabor, okmesonet, openair, OpenRepGrid, opentraj, OutbreakTools, paleobioDB, paleofire, parboost, pedometrics, peptider, pitchRx, planar, plotKML, plusser, pollstR, PopGenReport, pqantimalarials, predictmeans, primerTree, pROC, profr, pxweb, qgraph, RAM, rapportools, rbhl, RbioRXN, rbison, RcmdrPlugin.KMggplot2, RCMIP5, rdryad, rebird, REDCapR, RefManageR, repmis, reshape, reshape2, rfigshare, rgauges, rgbif, rinat, rLakeAnalyzer, rmongodb, RNeXML, rnoaa, robustvarComp, rplos, RSA, rsdmx, RSiteCatalyst, rsnps, rspear, rsunlight, rtematres, rvertnet, rWBclimate, RXKCD, rYoutheria, scales, scholar, semPlot, SeqFeatR, SGP, sharpshootR, simTool, sjPlot, soilDB, solr, sorvi, spocc, ss3sim, sss, Stack, StatRank, strvalidator, surveydata, taRifx, taxize, toaster, treeclim, treecm, TripleR, unmarked, useful, userfriendlyscience, ustyc, vardpoor, vdmR, vetools, Wats, weatherData, wppExplorer, XML2R, yhatr, ykmeans
bear, colourlovers, ggmap, HiveR, imguR, iplots, ivivc, loa, qgraph, rcdk, readbitmap, RgoogleMaps, tdm, zooimage
AssetPricing, iterpc, OPDOE, partitions, smacof, tsoutliers, untb
bdynsys, dpcR, geostatsp, GUILDS, PEIP, soundecology
coefplot, ggmap, ggplot2, ggsubplot, ggtern, ggthemes
CCTpack, CDM, lmSupport, matrixpls, OpenRepGrid, PSAboot, qgraph, qmethod, sdmvspecies, sirt, sjPlot, TAM, TriMatch, userfriendlyscience
chemosensors, earlywarnings, expectreg, GENLIB, hmmm, hybridEnsemble, ic.infer, lavaan, limSolve, list, mboost, mcprofile, nodeHarvest, npsp, parma, phangorn, pi0, ROI.plugin.quadprog, ScreenClean, simPH, tseries, uniReg, varComp
apTreeshape, chipPCR, diveMove, georob, mapStats, NSM3, quantspec, rlme, rms, RPPanalyzer, SGP
constrainedKriging, geoR, georob, lgcp, spatsurv
aCRM, aLFQ, bagRboostR, biomod2, bootfs, CALIBERrfimpute, ecospat, FSelector, gamclass, GSIF, hybridEnsemble, kernelFactory, mice, mlearning, nodeHarvest, optBiomarker, rasclass, rfPermute, RTextTools
bfast, birdring, clhs, ecospat, GCD, GSIF, hddtools, ipdw, lakemorpho, letsR, marmap, memgene, mkde, ncdf.tools, opentraj, paleofire, plotGoogleMaps, plotKML, rangeMapper, rAvis, sdmvspecies, secr, spdynmod, spectral.methods, wrspathrow
aroma.affymetrix, aroma.cn, aroma.core, PSCBS, repmis, R.filesets, R.rsp, scholar
BCA, BiodiversityR, HH, RcmdrPlugin.DoE, RcmdrPlugin.EACSPIR, RcmdrPlugin.EZR, RcmdrPlugin.FactoMineR, RcmdrPlugin.HH, RcmdrPlugin.IPSUR, RcmdrPlugin.KMggplot2, RcmdrPlugin.lfstat, RcmdrPlugin.MA, RcmdrPlugin.NMBU, RcmdrPlugin.orloca, RcmdrPlugin.qual, RcmdrPlugin.sampling, RcmdrPlugin.SCDA, RcmdrPlugin.SLC, RcmdrPlugin.sos, RcmdrPlugin.StatisticalURV, RcmdrPlugin.survival, RcmdrPlugin.TeachingDemos, RcmdrPlugin.temis
aqp, aroma.core, chemosensors, ChemoSpec, EpiModel, granovaGG, HH, HiveR, LICORS, loa, mapStats, micromapST, MKmisc, MSG, mstate, multiDimBio, MultiPhen, mvcwt, ncdf.tools, NMF, openair, OutbreakTools, paleofire, pheatmap, plotKML, pqantimalarials, psd, PubMedWordcloud, RAM, rangeMapper, rasterVis, rbefdata, RcmdrPlugin.KMggplot2, RcmdrPlugin.temis, RobLox, RobLoxBioC, RSA, scales, sharpshootR, SigTree, sorvi, spectral.methods, spocc, tmap, toaster, TraMineR, treemap, Wats, WeightedCluster
accelerometry, ALKr, apcluster, BalancedSampling, bayou, bfa, BIFIEsurvey, BIPOD, blockcluster, bvarsv, cda, CDM, cgAUC, CIDnetworks, cladoRcpp, classify, clere, climdex.pcic, clusteval, CMF, CompGLM, coneproj, CorReg, Delaporte, disclapmix, diveRsity, DNAprofiles, DNAtools, dplyr, DStree, eive, ESGtoolkit, EWGoF, fastM, fdaMixed, FDRreg, flip, FLSSS, forecast, Funclustering, fwsim, geiger, glcm, GMCM, gRbase, GUILDS, GxM, hawkes, HDPenReg, HLMdiag, hsphase, httpuv, iBATCGH, icamix, icensmis, inarmix, iterpc, jaatha, KernSmoothIRT, Kmisc, LaF, lbfgs, marked, MAT, maxent, mcIRT, metafolio, mets, miceadds, minqa, mirt, miscset, mkde, mmand, Morpho, MPTinR, MTS, mvabund, mvnfast, mwaved, nabor, ndl, NHMM, openair, openxlsx, PBC, pcalg, phylobase, planar, plotSEMM, plyr, polywog, powerr, PP, PReMiuM, pROC, prospectr, protViz, pryr, QRM, qVarSel, randomUniformForest, Rankcluster, rARPACK, RcppArmadillo, RcppBDT, RcppClassic, RcppCNPy, RcppEigen, RcppGSL, RcppMLPACK, RcppRedis, RcppSMC, RcppZiggurat, recosystem, ReorderCluster, repra, resemble, reshape2, rforensicbatwing, rgam, RInside, ripa, rkvo, rlme, RLRsim, rmgarch, rococo, roxygen2, rpg, rplexos, rPref, RProtoBuf, RQuantLib, RSNPset, Rtsne, Ruchardet, rugarch, Rvcg, SBSA, scrypt, sdcMicro, SelvarMix, sirt, slfm, SocialNetworks, spaMM, sparseLTSEigen, SpatialEpi, SpatialTools, spBayesSurv, StereoMorph, stochvol, stosim, strum, survAccuracyMeasures, synlik, TAM, termstrc, TFMPvalue, trustOptim, tvd, VIM, wordcloud, XBRL
archivist, Causata, dams, datamart, dataRetrieval, decctools, demography, devtools, dvn, emdatr, federalregister, FinCal, gfcanalysis, gProfileR, GuardianR, hddtools, helsinki, HierO, httr, imguR, interAdapt, MODISTools, MTurkR, ngramr, nhlscrapr, OAIHarvester, Ohmage, OIdata, OpasnetUtils, paleobioDB, paleofire, plusser, polidata, pubmed.mineR, PubMedWordcloud, qdap, qdapTools, Quandl, r4ss, RAdwords, rainfreq, rAvis, rbefdata, RbioRXN, Rbitcoin, rClinicalCodes, rdatamarket, rdryad, rDVR, rebird, recalls, RefManageR, Reol, reutils, rfishbase, RGA, rgbif, rite, rNOMADS, rnrfa, rplos, RProtoBuf, rpubchem, RPublica, rsdmx, rsnps, rtematres, rvertnet, rYoutheria, scidb, SocialMediaMineR, swirl, taRifx.geo, taxize, Thinknum, tm.plugin.webmining, translate, translateR, treebase, W3CMarkupValidator, XML2R, yhatr
hybridEnsemble, mmand, RNiftyReg, soma, tractor.base
alm, aqp, automap, benchmark, Biograph, bold, dynsurv, ezsim, GGally, kobe, lmms, Methplot, MissingDataGUI, MultiSV, opentraj, PopGenReport, rags2ridges, rapport, simTool, spikeSlabGAM, TTAinterfaceTrendAnalysis, WGCNA
aLFQ, alm, aoristic, AppliedPredictiveModeling, apsimr, BBEST, BEQI2, bmmix, capm, caret, cda, ChainLadder, classify, clhs, clickstream, clusterfly, coefplot, cooccur, cplm, Cubist, cutoffR, dataRetrieval, data.table, dcmr, decctools, DescribeDisplay, EasyHTMLReport, EpiDynamics, extracat, ez, FinCal, fSRM, ggmap, ggplot2, ggtern, granovaGG, growcurves, growfunctions, gstudio, hazus, HH, HLMdiag, imputeR, jaatha, mapStats, MGLM, mizer, Mobilize, mosaic, networkreporting, ngramr, NMF, OpasnetUtils, openair, OutbreakTools, pdfetch, planar, poppr, pqantimalarials, PSAboot, qdap, qgraph, quadrupen, RAM, RCMIP5, RDS, repra, rgauges, RNeXML, rplexos, rplos, rWBclimate, rYoutheria, saps, SGP, sharpshootR, simPH, SixSigma, sjPlot, ss3sim, structSSI, taRifx, taxize, TcGSA, tidyr, toaster, treebase, TripleR, tvm, vardpoor, wppExplorer, YourCast
aoristic, birdring, capm, dynatopmodel, fuzzyMM, gfcanalysis, GSIF, hddtools, lakemorpho, OpasnetUtils, opentraj, paleofire, pgirmess, plotGoogleMaps, plotKML, PopGenReport, rAvis, rgbif, rnoaa, rnrfa, rWBclimate, spocc, taRifx.geo, tmap, trajectories, tripEstimation, wrspathrow
birdring, constrainedKriging, DSpat, dynatopmodel, fuzzyMM, GeoXp, gfcanalysis, indicspecies, lakemorpho, lgcp, rgbif, rnoaa, RSurvey, spacetime, spocc, spsurvey, taRifx.geo, tmap, trajectories, wildlifeDI, wrspathrow
Anthropometry, ChemoSpec, clusterSim, GrammR, HUM, KernSmoothIRT, Luminescence, mixOmics, Morpho, nanop, NPCirc, OpenRepGrid, phangorn, pi0, RockFab, Rquake, SDD, shinyRGL, spatsurv, StatDA, symbolicDA, termstrc, vegan3d
CRF, HotDeckImputation, MCDA, networkTomography, parma, ROI.plugin.glpk, sparkTable
bayesDem, clusterfly, GrammR, PKgraph, playwith, rggobi, RQDA, Rz, strvalidator, VIMGUI, WMCapacity, x12GUI
bayesmix, BTSPAS, CCTpack, EasyMARK, tdm
bamboo, boilerpipeR, Deducer, DeducerExtras, expands, G2Sd, hive, jvmr, llama, mailR, mpoly, mutossGUI, Myrrix, Myrrixjars, openNLP, openNLPdata, OpenStreetMap, rcdk, ReporteRs, ReporteRsjars, RFreak, RKEA, RMOAjars, RWeka, RWekajars, wordnet, XLConnect, XLConnectJars
AntWeb, argparse, Causata, d3Network, geonames, GetoptLong, ggmap, helsinki, meteoForecast, mpoly, ngramr, nhlscrapr, OpasnetUtils, opm, OutbreakTools, paleobioDB, RAdwords, rbefdata, rClinicalCodes, rfisheries, rnrfa, solr, StereoMorph, structSSI, TSjson, vdmR, yhatr
BEQI2, biom, colourlovers, datamart, FAOSTAT, federalregister, googleVis, gridSVG, GuardianR, Ohmage, plusser, pxweb, Quandl, rbhl, Rbitcoin, rdatamarket, rdryad, rebird, recalls, RefManageR, rfigshare, rgbif, RgoogleMaps, rplos, rpubchem, RPublica, RPushbullet, rvertnet, rYoutheria, shiny, shopifyr, spocc, tabplotd3, taRifx.geo, Thinknum, tm.plugin.webmining, translate, translateR, visova
ACNE, aroma.affymetrix, aroma.apd, aroma.cn, aroma.core, calmate, cgdsr, matrixStats, NPCD, phylosim, PSCBS, R.cache, R.devices, R.filesets, R.huge, R.matlab, R.rsp, rtf, R.utils
bujar, Daim, ecospat, greport, LogisticDx, pec, plsRcox, PResiduals, riskRegression, shrink, VizOR
CerioliOutlierDetection, ChemoSpec, chipPCR, complmrob, cvTools, ergm, fAssets, fpc, georob, GeoXp, groc, MKmisc, mvoutlier, pcalg, rlme, robustlmm, robustvarComp, sdcMicro, shotGroups, StatDA, tergm, VIM
aLFQ, bootfs, DMwR, hybridEnsemble, mlDNA, netClass, OmicKriging, SCGLR, xergm
ACNE, aroma.affymetrix, aroma.apd, aroma.cn, aroma.core, calmate, cgdsr, PSCBS, R.cache, R.devices, R.huge, R.matlab, R.rsp, rtf
BCA, biomod2, bst, CORElearn, CorReg, DMwR, gamclass, GSIF, Hmisc, hybridEnsemble, imputeR, ipred, MergeGUI, mice, PSAboot, RcmdrPlugin.BCA, rminer, rms, supclust, synthpop, vcrpart
GEOmap, geophys, ProfessR, RFOC, Rquake, RSEIS, RTOMO
BatchExperiments, BatchJobs, marmap, SGP, sqliter, UPMASK
ACNE, aroma.apd, Causata, ChemoSpec, ForeCA, gdalUtils, MPAgenomics, PopGenReport, PSCBS, R.cache, R.devices, R.filesets, R.huge, R.matlab, R.rsp, SDMTools
betareg, censReg, fxregime, glmx, glogis, MarkowitzR, maxLik, multcomp, multiwayvcov, nonnest2, plm, PResiduals, Rchoice, systemfit, termstrc, vcrpart
aqp, bdscale, benchmark, choroplethr, clhs, coefplot, complmrob, Deducer, DescribeDisplay, EasyHTMLReport, extracat, ez, FAOSTAT, FinCal, fSRM, ggmap, ggplot2, ggsubplot, ggtern, ggthemes, GraphPCA, growcurves, growfunctions, ngramr, OutbreakTools, paleobioDB, plotKML, primerTree, qdap, quadrupen, RAM, rAvis, RcmdrPlugin.KMggplot2, RDS, rgauges, rnoaa, sharpshootR, sjPlot, soc.ca, spikeSlabGAM, strvalidator, toaster, useful, vetools
anacor, arulesViz, asbio, diffusionMap, FactoMineR, fractal, FrF2, GraphPCA, PharmPow, phytools, pi0, RSDA, smacof, vegan3d
CDM, Demerelate, FrF2, lokern, mcmcplots, mirt, random.polychor.pa, ReliabilityTheory, simsalapar, sirt, TAM
cape, dynatopmodel, Luminescence, marmap, NPCirc, OceanView, rmgarch, vows
adegenet, BBEST, capm, chipPCR, cosinor, CosmoPhotoz, datacheck, diveRsity, dpcR, flora, G2Sd, ggvis, interAdapt, mwaved, pqantimalarials, questionr, RGA, rgpui, RIGHT, shinyAce, shinyBS, shinyFiles, shinyRGL, signal.hsmm, StereoMorph, treemap, wppExplorer
lpmodeler, movMF, parma, relations, ROI, ROI.plugin.quadprog, ROI.plugin.symphony, skmeans, stm, textcat, tm, tm.plugin.dc, topicmodels, wordcloud
aqp, BayesX, bfast, birdring, capm, clhs, dynatopmodel, GCD, gdalUtils, geoBayes, gfcanalysis, ggtern, Gmisc, GSIF, gstat, gstudio, hddtools, hydroPSO, hydroTSM, indicspecies, lakemorpho, letsR, mapStats, marmap, mkde, Momocs, OpasnetUtils, opentraj, paleofire, pedometrics, pgirmess, plotKML, PopGenReport, popgraph, r2d2, rangeMapper, rasterVis, rAvis, rbison, rgbif, rgeos, rnoaa, rnrfa, RSurvey, rWBclimate, secr, sharpshootR, spacetime, spcosa, sphet, spocc, taRifx.geo, tmap, trajectories, tripEstimation, VIM, wildlifeDI, wrspathrow
CARBayes, CollocInfer, dynatopmodel, earlywarnings, growfunctions, nat.nblast, RandomFields
baseline, expoRkit, hts, pawacc, RItools
ads, dpcR, ecospat, intamapInteractive, polyCub, RImageJROI, surveillance, trip
agricolae, INLABMA, Momocs, pgirmess, spacom, SpatialEpi, sphet
ExceedanceTools, GEOmap, geoR, GeoXp, pgirmess, RFOC, RTOMO, seg, tspmeta
Bclim, cda, ChainLadder, cplm, dsm, equateIRT, LogisticDx, mlogit, mvabund, npmlreg, pglm, planar, R2STATS, RVAideMemoire
EpiModel, ndtv, networkDynamic, statnet, xergm
acs, aemo, afex, alm, aqp, BatchJobs, BayesFactor, beepr, BerlinData, bold, boostr, Causata, choroplethr, COPASutils, datacheck, decctools, docopt, dplR, EasyMARK, eeptools, evaluate, ez, fbRanks, games, gfcanalysis, GGally, ggsubplot, Gmisc, HistogramTools, httr, ISOweek, knitr, lint, lubridate, mailR, mpoly, networkreporting, ngramr, nlWaldTest, NMF, OpenRepGrid, pedometrics, pkgmaker, plotKML, polywog, primerTree, profr, pryr, PubMedWordcloud, pxweb, RAM, rAvis, RbioRXN, rClinicalCodes, RcppOctave, rdryad, redcapAPI, REDCapR, RefManageR, reportRx, reshape2, rgbif, rio, rlme, rngtools, rnoaa, rNOMADS, rnrfa, roxygen2, rplos, rprintf, RSiteCatalyst, rsnps, rsunlight, scholar, selectr, simPH, spatsurv, sqliter, Stack, statar, stm, surveydata, swirl, taxize, TcGSA, tspmeta, ucbthesis, vardpoor, vetools, vows, x12, x12GUI, x.ent, yhatr
aftgee, AIM, binequality, Biograph, c060, cg, compareGroups, CP, DStree, EMA, epoc, gamlss, greport, ipred, mboost, MIICD, mlr, msm, MST, muhaz, party, partykit, pec, penalized, plsRcox, pmml, powerSurvEpi, prodlim, rankhazard, RcmdrPlugin.KMggplot2, reportRx, riskRegression, shrink, simexaft, simPH, SMPracticals, spBayesSurv, tab, xpose4
svHttp, svIDE, svSocket, svTools, svWidgets
erer, micEconAids, micEconCES, micEconSNQP, sampleSelection
dynBiplotGUI, fSRM, HierO, RandomFields, Rcmdr, RcmdrPlugin.KMggplot2, RcmdrPlugin.sos, RcmdrPlugin.temis, rite, stylo, TTAinterfaceTrendAnalysis
growcurves, quantspec, rio, SixSigma, swirl, testthatsomemore
TScompare, TSdbi, tsfa, TSfame, TSgetSymbol, TShistQuote, TSjson, TSMySQL, TSodbc, TSPostgreSQL, TSsql, TSSQLite, TSxls, TSzip
TSfame, TSgetSymbol, TShistQuote, TSjson, TSodbc, TSPostgreSQL, TSSQLite, TSxls, TSzip
PubMedWordcloud, qdap, rClinicalCodes, RKEA, RTextTools, tm.plugin.alceste, tm.plugin.europresse, tm.plugin.factiva, tm.plugin.lexisnexis, tm.plugin.mail, tm.plugin.webmining, topicmodels
conting, erer, forecast, SDD, tsDyn, TShistQuote
arulesViz, DoE.base, gpairs, HH, pcalg, sdcMicroGUI, TIMP, VIM
Demerelate, forams, geomorph, lefse, memgene, MVPARTwrap, PopGenReport, poppr, sharpshootR, soundecology, taxize, tmap, tspmeta, xergm
cg, HiDimMaxStable, list, lllcrc, lymphclon, poweRlaw, sads, SemiParBIVProbit
d3Network, dendextend, devtools, ecoengine, rgbif, rplos, spocc
Mobilize, PubMedWordcloud, qdap, rbefdata, toaster
bayesDem, bayesLife, bayesPop, bayesTFR, wppExplorer
G2Sd, lar, ODMconverter, psData, qdap, repmis
acs, aRxiv, BerlinData, bold, BoolNet, causaleffect, Causata, colourlovers, comato, datamart, dataRetrieval, DDIwR, decctools, dplR, dvn, gemtc, graphicsQC, gridSVG, hddtools, HierO, hive, letsR, Luminescence, MALDIquantForeign, miniCRAN, MODISTools, MTurkR, myepisodes, OAIHarvester, ODMconverter, OpenRepGrid, pdfetch, pedometrics, plotKML, primerTree, pubmed.mineR, PubMedWordcloud, pvsR, qdap, rAvis, rbefdata, rbhl, rClinicalCodes, rdryad, readMzXmlData, RefManageR, Reol, reutils, rfigshare, rfishbase, rgbif, RNeXML, rnoaa, rNOMADS, rplos, rpubchem, RPublica, rsdmx, rsnps, rtematres, Ryacas, scholar, selectr, semPlot, solr, sorvi, spocc, sss, stressr, svIDE, taxize, TFX, tm.plugin.europresse, tm.plugin.factiva, tm.plugin.lexisnexis, tm.plugin.webmining, treebase, ustyc, vegdata, W3CMarkupValidator, WMCapacity
BEQI2, BioGeoBEARS, confidence, Correlplot, Crossover, descr, EasyHTMLReport, EMA, inTrees, IsoGene, lfe, MAMA, miscset, MplusAutomation, MSBVAR, multilevelPSA, nCal, OpasnetUtils, pedometrics, pkgmaker, PopGenReport, reportRx, RItools, robustlmm, shiny, sparkTable, StableEstim, StatDA, userfriendlyscience, x.ent
DMwR, easingr, hydroGOF, pdfetch, Quandl, rmgarch, RObsDat, rugarch, spacetime, stressr, tawny, tawny.types, TSdist, vetools
Causata, opm, rfigshare, rlist, rmarkdown, swirl
acss, bfast, dataRetrieval, DMwR, FDboost, gstat, hddtools, hydroPSO, iki.dataclim, LICORS, mlogit, pdfetch, PerformanceAnalytics, plm, plotKML, psd, Quandl, quantspec, rasterVis, rmgarch, rnrfa, RObsDat, rugarch, sandwich, scidb, spacetime, survMisc, tawny, tawny.types, TED, termstrc, tripEstimation, TSdist, tseries, TSgetSymbol, TShistQuote, vcrpart, Wats
bigalgebra, biganalytics, bigmemory, bigrf, bigtabulate, Boom, BoomSpikeSlab, bsts, ddalpha, dplyr, dynsurv, fts, GUTS, lsgl, MBA, msgl, mvnfast, nabor, pcalg, PReMiuM, RcppBDT, rcppbugs, RcppMLPACK, sglOptim, SSN, synchronicity
blkergm, ergm.count, ergm.graphlets, ergm.userterms, tergm
AdaptiveSparsity, Amelia, BayesComm, bayou, bfa, BIFIEsurvey, BIPOD, bvarsv, ccaPP, cda, CDM, cladoRcpp, coneproj, copCAR, Crossover, DepthProc, fastM, FBFsearch, fdaMixed, FDRreg, FisHiCal, flip, forecast, GeneticTools, geoCount, glcm, GMCM, gMWT, GPvam, gRbase, gRim, growcurves, growfunctions, GSE, hawkes, HLMdiag, hsphase, iBATCGH, icamix, lsgl, MAT, mcIRT, metafolio, mets, miceadds, miscF, mmand, Morpho, Mposterior, msgl, MVB, mvnfast, ngspatial, oem, pcalg, PedCNV, planar, PoweR, prospectr, psgp, quadrupen, rcppbugs, RcppDE, RcppMLPACK, RcppRoll, resemble, revealedPrefs, rgam, rmgarch, robustgam, robustHD, rotations, rugarch, SBSA, SelvarMix, sglOptim, sirt, slfm, snipEM, SpatialEpi, SpatialTools, spBayesSurv, strum, survAccuracyMeasures, synlik, TAM, treeclim, unmarked, zic
blockcluster, btf, clere, CorReg, FastHCS, FastPCS, FastRCS, Funclustering, gRbase, lme4, MPTinR, nabor, powerr, PReMiuM, Rankcluster, rARPACK, Rclusterpp, rpf, RSNPset, Rvcg, spaMM, sparseHessianFD, sparseLTSEigen, trustOptim
Anthropometry, cpca, HH, multivator, plyr, RcmdrPlugin.EZR, RcmdrPlugin.HH, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, tableplot
fitdistrplus, GeneralizedHyperbolic, HyperbolicDist, IPSUR, PhaseType
ChemometricsWithR, fscaret, mlr, pmml, rattle
biomod2, Guerry, GUniFrac, polysat, RcmdrPlugin.pointG, seqinr
censReg, glmx, LinRegInteractive, lmtest, micEconCES, mlogit, partykit, plm, REEMtree, sandwich
adegenet, asbio, BayesX, BiodiversityR, DiceEval, dynaTree, EDR, erpR, evd, fBasics, fMultivar, fractal, gam, kobe, laGP, locfit, plgp, portes, quantreg, R2BayesX, rgr, rpanel, sm, taRifx.geo, tgp, vegdata
EpiContactTrace, heplots, MSG, pitchRx, plotKML, RGraphics, surveillance
ade4, aqp, GLSME, hierfstat, HSAUR, HSAUR2, HSAUR3, igraph, jaatha, MVA, ouch, rphast, sand, structSSI, symmoments
IPSUR, Rcmdr, RcmdrPlugin.EZR, RSA, UsingR
BayesFactor, fscaret, GGally, multitable, optmatch, subsemble, SuperLearner
copula, emdbook, primer, R2admb, SEERaBomb
biganalytics, ff, ffbase, leaps, optmatch
bio3d, matpow, mlDNA, nat.nblast, NMF, PopGenome, rsgcc
dcemriS4, GGIR, hashFunction, rattle, XML
abd, AER, aod, asbio, CaDENCE, car, CARBayes, ChemometricsWithR, cond, crossReg, DAAG, doRedis, EffectsRelBaseline, ElemStatLearn, emplik, GEVcdn, gMCP, gsubfn, harvestr, HSAUR, HSAUR2, HSAUR3, investr, IPSUR, lme4, logmult, marg, matrixpls, MBESS, meboot, mirt, mistat, nlreg, npsm, optmatch, R2HTML, rms, robustbase, sem, semGOF, semPLS, simTool, Tampo, Wats
bcrm, BTSPAS, dclone, gemtc, MethComp, R2WinBUGS
apt, gWidgets2RGtk2, gWidgetsRGtk2, mlDNA, ProgGUIinR, rattle, Rz
abd, agridat, betareg, BIFIEsurvey, BiodiversityR, chemosensors, compareGroups, Ecdat, Ecfun, fastR, fscaret, gmm, HH, HistData, investr, lmtest, lsmeans, McSpatial, meboot, memisc, mistat, mlogit, Morpho, multcomp, perturb, pglm, plm, polywog, pscl, QCAGUI, RcmdrPlugin.EZR, RcmdrPlugin.HH, RcmdrPlugin.IPSUR, RcmdrPlugin.pointG, REdaS, sand, sandwich, SenSrivastava, Sleuth3, SMIR, strucchange, tableplot, vcdExtra
AppliedPredictiveModeling, Cubist, doParallel, doSNOW, emil, mlr, subsemble, SuperLearner
FinTS, gsubfn, Hmisc, metrumrg, Rcell, xts, zoo
boostr, catdata, ChemometricsWithR, ElemStatLearn, frbs, FRESA.CAD, fscaret, hmeasure, mlr, RoughSets, soil.spec, subsemble, SuperLearner, TunePareto
BiodiversityR, ChemometricsWithR, clues, e1071, flexclust, freqweights, GDAtools, GMD, grImport, languageR, mlr, nor1mix, pdfCluster, r2d2, R2HTML, REdaS, RGraphics, robustbase, robustfa, rrcov, rrcovNA, sfsmisc, sjPlot, sprint, TraMineR, TraMineRextras, vegan, VisuClust
emil, Epi, mstate, pec, RcmdrPlugin.EZR, riskRegression
AdMit, amen, BayHaz, bcp, CARramps, CARrampsOcl, embryogrowth, emdbook, GeneFeST, geoCount, geoRglm, ggmcmc, ltbayes, MethComp, pscl, R2admb, R2BayesX, rbugs, relevent, surveillance, Zelig, zoo
enaR, flexmix, formatR, knitr, peperr, RSiena
agridat, benchmark, choplump, glmperm, gMCP, HSAUR, HSAUR2, HSAUR3, interval, IPSUR, multcomp, partykit, perm, sjPlot, UsingR, vcd
aqp, cba, copula, dendextend, DirichletReg, geiger, grImport, IsotopeR, movMF, netmeta, nonrandom, OpenStreetMap, party, psychotree, rasterVis, rattle, Rcmdr, RGraphics, RSurvey, surveillance, tourr
ecp, IPSUR, MCMCglmm, needy, polysat, SNPmaxsel
dplyr, installr, Lahman, ProjectTemplate, taRifx, Xmisc
aroma.affymetrix, ETLUtils, mitools, pitchRx, ProjectTemplate, quantmod, redcapAPI, WhopGenome
ade4, CARBayes, cccd, dismo, ecolMod, hyperSpec, latticeExtra, PBSmapping, R2Cuba
aRxiv, broman, doRNG, icd9, installr, metafolio, NlsyLinks, NMF, packrat, pkgmaker, PSAboot, readODS, REDCapR, smss, testthat, Wats
aqp, nat.utils, R.cache, R.devices, rmarkdown, robustlmm, R.rsp, R.utils
distr, distrRmetrics, distrSim, distrTEst, FinTS, geoCount, IPSUR, RcmdrPlugin.IPSUR, SweaveListingUtils
BayesFactor, bayou, Bclim, breakpoint, Causata, chemosensors, dcGOR, dnet, fitTetra, JBTools, kaps, MetaPCA, MetaQC, pec, plyr, pROC, TED
bigrf, clustvarsel, diveRsity, doRNG, fdasrvf, GA, harvestr, HMPTrees, intamap, msm, pbo, penDvine, protr, psgp, RCMIP5, regRSM, resemble, rpg, simsalapar, ss3sim, treatSens
bdscale, fueleconomy, nycflights13, pitchRx, pollstR, rattle, rex
A3, benchmark, BiodiversityR, boostr, caret, caschrono, catdata, ChemometricsWithR, classifly, clue, coin, Daim, FinTS, frbs, fscaret, gld, IPSUR, klaR, languageR, mistat, mlr, pmml, rattle, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, ripa, RWeka, soil.spec, strucchange, subsemble, SuperLearner, TDMR, tmle.npvi, TunePareto, VBmix
BiodiversityR, caret, ElemStatLearn, fscaret, mda, mlr, plotmo, SPOT, subsemble, SuperLearner
catdata, Ecfun, gamclass, intReg, micEcon, miscTools
acss, AER, BiodiversityR, heplots, psychomix, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.pointG, vcdExtra
AppliedPredictiveModeling, BiodiversityR, caret, emdbook, flexclust, flexmix, fscaret, geostatsp, IsotopeR, logmult, MetaPCA, nlmeU, plgp, rattle, robustfa, rrcov
caret, ChemometricsWithR, fGarch, fmri, fscaret, NMF, yaImpute
caschrono, cati, lawstat, mlDNA, modeest, rattle, stabledist
bayesPop, bigGP, CompRandFld, ensembleBMA, ensembleMOS, expectreg, FDboost, gstat, IPMpack, LMERConvenienceFunctions, mboost, npsp, popgraph, RCMIP5, RSA, smoothie, spam, SpatioTemporal, SPOT, taRifx.geo
catdata, HSAUR, HSAUR2, HSAUR3, rebmix, tlemix
BayesFactor, bayou, Bclim, biganalytics, dcGOR, DEoptim, diveRsity, dnet, dplR, FinancialInstrument, fitTetra, fxregime, gam, ggmcmc, glmnet, harvestr, itertools, kaps, lava, pbo, phenex, plyr, protr, ripa, rpg, simsalapar, sperich, ss3sim, strucchange, treatSens
dplR, gamclass, lifecontingencies, mFilter, portes, XLConnect
AER, aqp, biomod2, CARBayes, gap, mitools, multcomp, Nippon, oce, PBSmapping, prabclus, PracTools, prevR, ProjectTemplate, rattle, Rcmdr, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, REdaS, rfordummies, RGIFT, SciencesPo, semTools, simsem, SMIR, spacetime, spdep, survey
evtree, HSAUR3, partykit, psychotools, quantreg, Zelig
agridat, BiodiversityR, biomod2, caret, DiceEval, ElemStatLearn, fscaret, locfit, pscl, slp, sm, subsemble, SuperLearner, tmle.npvi, tsModel, yaImpute
aods3, depmixS4, gamboostLSS, mice, MNM, PerformanceAnalytics, surveillance, texreg
BiodiversityR, dismo, fscaret, mboost, mlr, subsemble, SuperLearner
Ecdat, Ecfun, HistogramTools, ipdw, MetaQC, plotMCMC, popReconstruct, primer, ProjectTemplate, rattle, rfigshare, rioja, scape, SII, SMIR, sorvi, taRifx, taRifx.geo
ape, catdata, dlnm, HSAUR, HSAUR2, HSAUR3, longpower, Zelig
catdata, contrast, CorrBin, dlnm, doBy, etm, geeM, lava, meboot, MRCV, MuMIn
geoBayes, georob, geospt, geostatsp, ipdw, npsp, prevR, rpanel, simba, SpatialPack, spBayes, taRifx.geo
abctools, abd, archetypes, ARPobservation, automap, bams, bbmle, BCEA, binom, BlandAltmanLeh, cda, chron, clere, clusterfly, coloc, cvxclustr, dams, data.table, demi, dielectric, directlabels, disclapmix, doBy, dplyr, ecoengine, emdatr, evaluate, FField, freqweights, frontiles, gcookbook, gender, ggROC, glinternet, gridDebug, gridExtra, hazus, HistData, HiveR, hyperSpec, installr, Kmisc, knitrBootstrap, Lahman, lda, LDheatmap, lme4, ltbayes, MAc, MAd, mistat, mlr, morse, MSG, multitable, munsell, mwaved, NlsyLinks, OpenStreetMap, optiRum, pander, PBImisc, peptider, planar, playwith, plspm, pollstR, popReconstruct, profr, ProjectTemplate, PSCBS, psd, pxweb, R2admb, raincpc, rasterVis, rattle, rbefdata, RcmdrPlugin.MA, RCMIP5, ReporteRs, rex, rfordummies, RIGHT, robustbase, rpf, rtematres, rtf, SamplerCompare, sand, SDaA, seewave, simTool, snpEnrichment, SPOT, ss3sim, StatRank, SuperLearner, tabplot, Tampo, taRifx, TeachingDemos, tikzDevice, timeit, TimeProjection, tourr, tourrGui, trapezoid, treecm, UsingR, varbvs, vcdExtra, wesanderson, wq, XLConnect, zoo
catdata, emil, fbRanks, FRESA.CAD, fscaret, MESS, mlr, ModelGood, nscancor, pmml, randomForestSRC, subsemble, SuperLearner
bayesTFR, Kmisc, Lahman, NanoStringNorm, spacetime, tfplot, vegdata
FAiR, FinTS, Lambda4, psych, REdaS, semTools, sirt
automap, BayesX, lgcp, polyCub, spatsurv, surveillance, UScensus2010
dendextend, dendsort, FRESA.CAD, gmodels, heplots, HistData, MAMA, MKmisc, mlDNA, opm, pbkrtest, PerformanceAnalytics, protiq, rattle, RGraphics, simba, spartan, YplantQMC
cda, chemosensors, disclapmix, FField, ltbayes, morse, mwaved, opm, planar, RcmdrPlugin.MA, remote, RGraphics, rotations, rpf, SCGLR, StatRank, surveillance, TriMatch
Bessel, maRketSim, MBESS, PearsonDS, spatstat, TunePareto
agridat, dismo, GWmodel, ipdw, mgraph, npsp, sos4R, sp, spacetime, spcosa
gmodels, HistData, LINselect, MetaQC, nonparaeff, rattle, R.filesets, SPOT
baseline, ENmisc, extremevalues, LifeTables, ProgGUIinR, RGraphics, TopKLists, vegdata
apt, dbConnect, LifeTables, ProgGUIinR, rattle, RGraphics, RGtk2Extras, TopKLists
data.table, ggplot2, openair, RGraphics, RnavGraph, survey
Rcpp, RcppCNPy, RcppGSL, RcppZiggurat, RHRV, RProtoBuf
abd, ascii, BB, bbmle, bfp, BIFIEsurvey, biomod2, contrast, Deducer, denstrip, emil, epade, fastR, fscaret, ggplot2, IPSUR, languageR, lawstat, MARSS, MissingDataGUI, mlr, ndl, networksis, nlme, pec, PerformanceAnalytics, planar, plotKML, PopED, PSCBS, rattle, Rcell, Rcmdr, RcmdrPlugin.pointG, redcapAPI, RGraphics, rknn, Rmisc, Rz, simsalapar, Sleuth3, smcUtils, StatMatch, subsemble, SuperLearner
bio3d, catnet, ConnMatTools, dna, dynatopmodel, enaR, flare, igraphdata, isa2, knitrBootstrap, lava, lfe, metafor, NetSim, osmar, raster, rbmn, rgp, RGraphics, rtop, spatgraphs, SPMS, stm, surface, TunePareto
hyperSpec, Rclusterpp, Rcpp, RcppClassic, RcppDE, RcppEigen, RcppGSL, Rmalschains
caret, ChemometricsWithR, Daim, fscaret, party, RGraphics, sperrorest, subsemble, SuperLearner
dyn, quantmod, tframePlus, TSdata, tseries, xts, zoo
apcluster, BiodiversityR, caret, colorspace, dismo, evtree, fscaret, gamclass, mlr, pmml, rattle, sand, SPOT, vcd
AER, bpkde, colorspace, copula, EMMIXuskew, HistData, HSAUR, HSAUR2, HSAUR3, latentnet, lattice, MSG, MVA, NCmisc, openair, PBSmodelling, simsem, stm, survey, vcd
coxme, gap, multic, pbatR, seqMeta, skatMeta
ChemometricsWithR, clusterfly, clValid, fscaret, RankAggreg
ChemometricsWithR, COBRA, directlabels, dna, ElemStatLearn, fscaret, lassoscore
AER, AppliedPredictiveModeling, bams, baseline, beanplot, betareg, binom, bio3d, BiodiversityR, bnlearn, cardidates, cati, ChoiceModelR, CombMSC, contrast, copCAR, CORElearn, CorrBin, DAAGxtras, dclone, denstrip, desirability, DiceDesign, directlabels, diveMove, dyn, EnvStats, ergm, eRm, evaluate, evtree, fda, FuncMap, gamlss.add, gcExplorer, geoR, glogis, gridBase, gridDebug, gridExtra, gridSVG, grImport, GSE, gsubfn, hamlet, heplots, HistData, HiveR, HSAUR, HSAUR2, HSAUR3, hydroTSM, IPSUR, isa2, JoSAE, KRLS, Lahman, languageR, LDheatmap, libamtrack, LPCM, lsmeans, marmap, MASS, MEMSS, meteoForecast, MethComp, mlbench, mlmRev, mlogit, Morpho, morse, mosaicData, movMF, MPDiR, mpMap, multitable, mutoss, MVA, nlmeU, npmlreg, nutshell, Oncotree, OrgMassSpecR, pander, PBImisc, pdc, PKPDmodels, planar, plm, polyCub, polywog, protViz, psyphy, QTLRel, R2admb, r2d2, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, RcppDE, RcppZiggurat, remote, reshape2, RFLPtools, rfordummies, rioja, RMark, robustbase, robustfa, robustX, rpanel, rrcov, rrcovNA, RSiena, rtf, sand, SASmixed, SCEPtER, SemiPar, simecol, Sleuth2, Sleuth3, SMIR, soilDB, SoilR, spdep, sperich, SPOT, SPSL, STAR, StatRank, stellaR, subsemble, SuperLearner, surveillance, survey, tableplot, taRifx, TeachingDemos, tergm, texmex, tmvtnorm, topicmodels, TrackReconstruction, ustyc, vcdExtra, WeightedCluster, XLConnect
agridat, aqp, directlabels, ergm, hyperSpec, mirt, pbo, remote, RGraphics, Rmisc, survSNP
car, ChemometricsWithR, DAAG, ElemStatLearn, fscaret, gamclass, glmulti, Rcmdr, RcmdrPlugin.NMBU, SenSrivastava, Sleuth3
agridat, AICcmodavg, aod, BayesFactor, benchmark, car, catdata, DAAG, dlnm, doBy, effects, expp, flexmix, glmulti, gmodels, hamlet, HSAUR, HSAUR2, HSAUR3, irtrees, kulife, kyotil, languageR, lava, lsmeans, mediation, metafor, MethComp, mice, MPDiR, multcomp, MuMIn, NanoStringNorm, ordinal, pan, phia, phmm, R2admb, R2MLwiN, RcmdrPlugin.NMBU, RLRsim, SASmixed, sirt, SPOT, texreg, TripleR
car, censReg, crch, Ecdat, Ecfun, FinTS, fxregime, IPSUR, meboot, multcomp, multiwayvcov, pglm, plm, pscl, psychomix, Rcmdr, RcmdrPlugin.IPSUR, sampleSelection, sandwich, sjPlot, strucchange, vcdExtra
DAAGbio, kaps, mFilter, peperr, reldist, spatstat
FDboost, gstat, marmap, openair, RGraphics, sos4R, spacetime, waterData
agridat, CompRandFld, dams, eeptools, Geneland, ggplot2, knitrBootstrap, latticeExtra, MapGAM, maps, marmap, mosaic, move, taRifx.geo
adegenet, agridat, aqfig, aqp, choroplethr, dams, ecolMod, ensembleBMA, ensembleMOS, FDboost, Geneland, GEOmap, ggplot2, HistData, HSAUR3, iplots, knitrBootstrap, kriging, latticeExtra, lga, MapGAM, marmap, MARSS, Mobilize, phenology, popgraph, rainfreq, RcmdrPlugin.pointG, remote, RGraphics, rpanel, sos4R, spacetime, spaMM, SpatioTemporal, SSsimple, taRifx.geo, tikzDevice, TSP, waterData, YplantQMC
ade4, adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, AMOEBA, aqp, automap, CARBayes, dismo, ETAS, fuzzyMM, gamlss.spatial, GeoXp, ggplot2, GSIF, gstat, Guerry, HSAUR3, hydroTSM, knitrBootstrap, mosaic, move, OpenStreetMap, PBSmapping, plotKML, prabclus, prevR, R2BayesX, rgeos, RgoogleMaps, RGraphics, RObsDat, secr, sos4R, spacetime, spatstat, spdep, spgwr, surveillance, taRifx.geo, TeachingDemos, TSP
BayesFactor, chipPCR, htmltools, R.rsp, shiny, signal.hsmm, whisker
AdaptiveSparsity, AICcmodavg, blockmodeling, CARBayes, cccd, ChoiceModelR, classGraph, corrgram, dils, e1071, extraTrees, fGarch, gcbd, gemtc, gmodels, HSAUR, HSAUR2, lava, lda, mefa, MESS, PAGI, pcalg, quantreg, rattle, RcppArmadillo, R.matlab, Rmpfr, robustbase, robustvarComp, sfsmisc, spam, spatgraphs, spatstat, sprint, sptm, stabledist, survey, SweaveListingUtils
catdata, Daim, fscaret, HSAUR2, HSAUR3, mlr, spikeSlabGAM
ChemometricsWithR, clusterfly, clValid, HSAUR, HSAUR2, HSAUR3, LogConcDEAD, MVA, qVarSel, RankAggreg, rebmix, REdaS, robustfa, rrcov, StatDA
BayesDA, DOBAD, dyn, frontier, harvestr, IPMpack, pscl, SciencesPo, Zelig
BiodiversityR, caret, DiceEval, earth, ElemStatLearn, fscaret, GSIF, HandTill2001, mlr, rminer, subsemble, SuperLearner
agridat, BCEA, BiodiversityR, biomod2, car, caret, catdata, diseasemapping, dlnm, dplyr, flexmix, fscaret, ggplot2, ggvis, granova, HSAUR2, HSAUR3, latticeExtra, lazyData, LMERConvenienceFunctions, MatchIt, mediation, MuMIn, Rcmdr, RcmdrPlugin.HH, RcmdrPlugin.IPSUR, rioja, rpanel, simex, Tampo, taRifx.geo, vegan
Hmisc, HSAUR3, Lambda4, MissingDataGUI, rattle, semTools
BBmisc, dendextend, dendextendRcpp, dplyr, gRbase, icd9, Kmisc, lazyeval, mvnfast, pROC, RcppRoll, RcppZiggurat
archetypes, boostr, Boruta, caret, clusterSim, Cubist, doParallel, doSNOW, e1071, evtree, flexmix, fscaret, FSelector, gamclass, HSAUR3, ipred, itree, klaR, mboost, mlearning, mlr, mobForest, party, partykit, pmml, RODM, RWeka, spikeSlabGAM, subsemble, SuperLearner, zooimage
AER, catdata, catspec, flexmix, McSpatial, mlogitBMA
benchmark, BiodiversityR, coin, doBy, DoseFinding, ETC, evtree, fastR, flexmix, ggplot2, HSAUR2, HSAUR3, languageR, mcprofile, metafor, microbenchmark, mratios, multcompView, MVA, opm, psychotools, Rcmdr, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, Sleuth3
acopula, Anthropometry, bayesGDS, bpkde, ccaPP, CerioliOutlierDetection, chngpt, colorspace, coxme, DepthProc, disp2D, ecp, FastHCS, FastPCS, FastRCS, fCopulae, flexmix, FNN, gconcord, glmlep, gmm, hda, HH, HSAUR, HSAUR2, HSAUR3, IPMpack, ipred, IPSUR, laGP, LINselect, MCMCglmm, mistat, monomvn, MVA, mvnfast, party, partykit, pcalg, polyCub, prabclus, pscl, psych, RcmdrPlugin.EZR, RcmdrPlugin.NMBU, robustHD, robustvarComp, sampleSelection, simFrame, SNPmaxsel, SparseGrid, sparseLTSEigen, sparseMVN, sptm, stochvol, strucchange, stsm, threeboost, tlemix, vcd, Zelig
degreenet, epinet, GGally, GGMselect, rDNA, RDS, RGraphics, RSiena, sand, sna, texreg
AER, agridat, AICcmodavg, car, CARBayes, contrast, Crossover, data.table, directlabels, effects, Epi, fda, FRESA.CAD, gap, ggplot2, gmodels, hamlet, heplots, kyotil, lsmeans, maSAE, MASS, MBESS, mice, mratios, multcomp, MuMIn, MVA, mvmeta, npmlreg, phia, primer, psyphy, R2HTML, Rcmdr, RcmdrPlugin.IPSUR, regress, rggobi, RLRsim, RMark, robustvarComp, rsae, scam, sfsmisc, simex, texreg, visreg
AER, AICcmodavg, bayesMCClust, BiodiversityR, boostr, caret, catdata, ChemometricsWithR, e1071, effects, fscaret, glmulti, GSIF, HandTill2001, MASS, MatchIt, mlDNA, mlogit, mlr, mnlogit, MuMIn, ordinal, pmml, psychomix, R2HTML, race, rattle, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, relimp, ROSE, subsemble, SuperLearner, VBmix, vcdExtra
BB, diversitree, DoseFinding, embryogrowth, emdbook, flexsurv, glmx, gof, KFKSDS, metafor, msm, nlmrt, pso, psychomix, ROI, rpf, sna, stsm, stsm.class, surveillance, ucminf
betareg, caret, catdata, emil, evtree, fscaret, HSAUR, HSAUR2, mboost, mlr, ModelGood, multilevelPSA, pec, rattle, RGraphics, subsemble, SuperLearner, wsrf
car, doBy, lme4, lsmeans, RcmdrPlugin.NMBU
ade4, ade4TkGUI, bmp, gridExtra, ICS, ProjectTemplate, readbitmap, RGraphics
AER, censReg, frontier, meboot, micEcon, spacetime, systemfit
AMOEBA, Anthropometry, archdata, diveRsity, geneListPie, hyperSpec, IsotopeR, MSG, pdc, popKorn, RGraphics, RMark, rysgran, simba, SpatioTemporal, TrackReconstruction
agridat, baseline, caret, fscaret, geiger, hyperSpec, LINselect, mlr, plsRbeta
abd, afex, ARPobservation, bams, bayesGDS, bear, cpca, data.table, dendextend, discreteRV, dostats, eeptools, emdatr, gcookbook, ggthemes, GSIF, gtable, hillmakeR, HistData, hydrostats, installr, jsonlite, Kmisc, knitrBootstrap, Lahman, metafor, mvnfast, NlsyLinks, optiRum, plumbr, ProjectTemplate, psd, rattle, rbefdata, sparseHessianFD, sparseMVN, TimeProjection, trapezoid, vcdExtra
aroma.core, Cairo, httr, mmand, openair, orloca, RGraphics, RImageJROI, ripa, RnavGraph, SPMS, TeachingDemos
binom, caschrono, copula, FinTS, multipol, Rmpfr
caret, Causata, fscaret, mlr, RcmdrPlugin.EZR, waffect
caret, dbstats, fscaret, isopam, qdap, sets
FAiR, FinTS, gendata, GSIF, pairwise, rattle, REdaS
EnvStats, IPSUR, mistat, RcmdrPlugin.IPSUR, RcmdrPlugin.qual
clue, crs, DoseFinding, dti, fda, MixtureInf, monomvn, NMOF, subsemble, SuperLearner, surveillance
AER, car, crs, DAAG, dyn, gamclass, ggplot2, gsubfn, HSAUR3, latticeExtra, mediation, np, npRmpi, PerformanceAnalytics, picante, Rz, simsem, sitar, survey
AICcmodavg, BCEA, BCEs0, iBUGS, LakeMetabolizer
AICcmodavg, bcrm, classify, dclone, emdbook, gemtc, mcmcplots, MethComp
CompRandFld, fractaldim, geostatsp, rpanel, spatstat
A3, BatchExperiments, BiodiversityR, boostr, caret, ChemometricsWithR, COBRA, DAAG, DAAGxtras, Daim, dismo, doMPI, dyn, e1071, emil, foreach, fscaret, HSAUR, HSAUR2, HSAUR3, ICEbox, LINselect, mlr, ModelGood, pmml, rattle, rminer, SPOT, subsemble, SuperLearner, TDMR, tmle.npvi, TunePareto, VHDClassification, wsrf, yaImpute
caret, fscaret, GeoXp, LICORS, nabor, spdep
autopls, BiodiversityR, Digiroo2, gdalUtils, geosphere, glcm, hSDM, insol, raincpc, rainfreq, RandomFields, RGraphics, RNCEP, rworldmap, SDMTools, soilwater, solaR, spacetime, unmarked, VoxR
doRNG, miceadds, multitable, psd, Rclusterpp, Rcpp, RcppZiggurat
Anthropometry, aroma.affymetrix, bams, berryFunctions, bReeze, dendsort, emil, expm, FRESA.CAD, gapmap, GGally, ggparallel, GWmodel, kitagawa, LPStimeSeries, MADAM, mapmisc, maptools, mboost, McSpatial, metafolio, mlearning, Nippon, PST, randomForest, rattle, RgoogleMaps, RGraphics, rgrs, RObsDat, robustbase, RRF, rworldmap, solaR, sp, spacetime, spdep, sperich, survSNP, tbart
cxxfunplus, devtools, hyperSpec, inline, RcppParallel
bio3d, boilerpipeR, d3Network, Ecdat, Ecfun, fbRanks, fda, fuzzyMM, GSIF, knitr, markdown, mosaic, move, plotKML, soilDB, sorvi, sysfonts, trajectories, XML
data.table, demi, eeptools, emdbook, gsubfn, heplots, HistData, HiveR, IPSUR, miceadds, nlmeU, plotKML, plspm, popReconstruct, PracTools, ProjectTemplate, rattle, rggobi, ripa, rjstat, Tampo, tis
bams, directlabels, ggthemes, heplots, jsonlite, Kmisc, knitrBootstrap, Lahman, lda, ltbayes, metafolio, mlr, mosaicData, nullabor, psd, rfordummies, robustbase, robustlmm, rpf, rspear, sparseMVN, Tampo, tourr, treecm, wq
autopls, bayesTFR, BiodiversityR, dismo, ecospat, gdalUtils, geostatsp, geotopbricks, Grid2Polygons, gstat, hydroTSM, ibeemd, intamap, intamapInteractive, leafletR, lgcp, mapmisc, meteoForecast, psgp, raster, RgoogleMaps, RGraphics, RSurvey, rtop, rts, rworldmap, secr, seg, soilDB, sos4R, sp, spacetime, spatsurv, spcosa, sperich, spgrass6, trip, UScensus2010, usdm
DiceKriging, fitdistrplus, Matching, MuFiCokriging, pnn, SPOT, Synth
adehabitatHR, adehabitatHS, aqp, BayesX, dismo, gstat, maptools, polyCub, rangeMapper, raster, rtop, sampSurf, secr, sp, surveillance, vdmR
classifly, rattle, RGraphics, ripa, tourrGui
AER, analogue, BCA, ca, candisc, car, cda, CombMSC, compositions, crs, DeducerExtras, DepthProc, DiceDesign, directPA, dynatopmodel, emdbook, EMMIXuskew, FisHiCal, genridge, geometry, granova, heplots, HiDimMaxStable, HiveR, hyperSpec, igraph, insol, knitr, labdsv, latentnet, lle, LMERConvenienceFunctions, LogConcDEAD, MCMCglmm, misc3d, MSG, msir, orientlib, pamm, phytools, pitchRx, polywog, prim, ptinpoly, quantreg, rasterVis, Rcmdr, RcmdrPlugin.BCA, RGraphics, RnavGraph, rotations, rpanel, RQuantLib, RSA, RSurvey, Rvcg, sampSurf, seewave, sensitivity, sm, sna, soobench, spatgraphs, spcosa, SPOT, StereoMorph, stpp, TeachingDemos, TrackReconstruction, trajectories, tsDyn, vcdExtra, vegan, visreg, VoxR
apt, fanc, LifeTables, ProgGUIinR, rattle, TopKLists
bcrm, dclone, gemtc, ggmcmc, LEAPFrOG, MethComp, morse, nCal, runjags
audited, CommonJavaJars, dismo, ecospat, GSIF, JavaGD, partykit, Rcmdr, svMisc, zooimage
BerlinData, fuzzyMM, GSIF, installr, jsonlite, plotKML, rsnps, sorvi, trajectories
bigGP, dclone, ergm.graphlets, snow, snowFT
devtools, ggvis, knitr, lazyeval, RcmdrPlugin.MA
DATforDCEMRI, fda, geometry, hyperSpec, poweRlaw, Rcell
ConjointChecks, IndependenceTests, irace, McParre, parallelMap, PCIT, pls, regRSM, simsalapar, snow, snowfall, snowFT
bbmle, catdata, gap, haplo.stats, Hmisc, languageR, ModelGood, perturb, rankhazard, riskRegression, survAUC, SvyNom
dplyr, ProjectTemplate, quantmod, RObsDat, sqldf, sqlutils, TSsql, WhopGenome
depth, DepthProc, ICS, mlr, multcomp, PerformanceAnalytics, robcor, rsae, simsalapar, timeSeries
AER, dismo, mlr, rattle, recommenderlab, sand, SuperLearner, TDMR
biglm, BiodiversityR, dynBiplotGUI, ETLUtils, mitools, monitoR, ProjectTemplate, QCAGUI, rattle, rAverage, Rcmdr, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, RcmdrPlugin.temis, REDCapR, rioja, RODM, rpart.utils, sos, sqlutils, survey
alm, aRxiv, broman, devtools, df2json, discreteRV, GGally, icd9, intergraph, knitrBootstrap, lint, mizer, nat.utils, nlmeU, nscancor, nsprcomp, paleobioDB, pnn, PP, protoclass, pt, questionr, R4CouchDB, rappdirs, rAvis, rbhl, rbundler, rClinicalCodes, readODS, rgauges, rgbif, rnoaa, rpf, rplos, rsnps, rvertnet, rYoutheria, scholar, sdmvspecies, solr, spdynmod, spocc, taxize, TimeProjection, vartors
BatchExperiments, BiodiversityR, CALIBERrfimpute, catdata, caTools, ChemometricsWithR, classifly, DAAG, Daim, doParallel, doSNOW, e1071, evtree, FRESA.CAD, fscaret, FSelector, ggdendro, HandTill2001, HSAUR, HSAUR2, HSAUR3, klaR, languageR, MatchIt, mboost, mlr, ModelGood, partykit, pec, plotmo, pmml, R2HTML, rattle, ROSE, subsemble, SuperLearner
dplyr, ProjectTemplate, RObsDat, spacetime, sqldf, sqlutils
BMA, CerioliOutlierDetection, ChemometricsWithR, fscaret, GSE
babel, matrixStats, metafor, mosaic, plsRglm, PSCBS, randomUniformForest, R.devices
DoseFinding, FRAPO, LambertW, mirt, qualityTools, TBSSurvival
biglm, caroline, DBI, dplyr, ETLUtils, freqweights, nutshell, nutshell.bbdb, pitchRx, ProjectTemplate, quantmod, RObsDat, scrime, sqlutils, survey, taRifx, TSsql
bbmle, bigmemory, blme, ChainLadder, chngpt, climdex.pcic, cmaes, CompGLM, Crossover, DatABEL, doRNG, doSNOW, dplR, emoa, fArma, fAsianOptions, fAssets, fBasics, fBonds, fCopulae, fExoticOptions, fExtremes, fGarch, fImport, fingerprint, fMultivar, fNonlinear, fOptions, fRegression, fTrading, fUnitRoots, futile.matrix, gbm, gdata, gdsfmt, glarma, gldist, gMCP, HistogramTools, hwriterPlus, iterators, krm, kyotil, lambda.r, lisp, logitnorm, matrixpls, mcr, mkin, move, mutoss, NanoStringNorm, nCal, ncdf4.helpers, NMF, NMOF, nonlinearTseries, NormalLaplace, nplr, PCICt, pdmod, Peptides, phylobase, pkgmaker, protViz, qmrparser, rcdk, Rclusterpp, Rcpp, RcppArmadillo, RcppClassic, RcppClassicExamples, RcppEigen, RcppExamples, RcppGSL, RcppOctave, RcppRedis, rJavax, RMongo, rmongodb, rngtools, RobAStBase, RProtoBuf, RQuantLib, rredis, RSocrata, RSofia, RSQLite, simTool, sp23design, spatialprobit, spcosa, sprint, sptm, stabledist, tawny, tawny.types, TFMPvalue, timeDate, timeSeries, TTR, vacem, WeightedCluster, XLConnect, Xmisc
car, contrast, dyn, dynlm, Ecdat, Ecfun, FinTS, HSAUR2, HSAUR3, lmtest, partykit, pscl, SharpeR
chron, disclapmix, GGally, likeLTD, multitable, NlsyLinks, optiRum, RcmdrPlugin.MA, surveillance, tis, Wats, XLConnect, zoo
AER, CompRandFld, copula, deSolve, ecolMod, ETAS, geoR, GHQp, HDMD, HSAUR, HSAUR2, HSAUR3, hydroPSO, IPSUR, klaR, LPCM, mco, mopsocd, MVA, orientlib, RGraphics, RODM, RSNNS, sandwich, spatstat, TrackReconstruction, tsDyn, tseriesChaos, vegan
aspect, Ecdat, Ecfun, FAiR, MBESS, MVA, psych, Rcmdr, semPLS, systemfit
adegenet, cubfits, phangorn, rnaseqWrapper, SimRAD
ChemometricsWithR, copula, expm, longmemo, pcalg, Rmpfr, robcor, robustbase, stabledist
CARBayes, Guerry, mapplots, R2BayesX, taRifx.geo
embryogrowth, EpiModel, formatR, googleVis, koRpus, mirt, pitchRx, rangeMapper, rmarkdown, seasonal, tabplot, tigerstats, timeline
blockmodeling, ChemoSpec, ergm, GGally, HiveR, MSG, network, rDNA, sand
breakpoint, ConjointChecks, dclone, ergm, geoCount, IndependenceTests, lga, MBESS, raster, STAR, tergm, varSelRF
koRpus, movMF, qdap, rattle, RcmdrPlugin.temis, stm, tm, topicmodels
BaSTA, COBRA, CoxBoost, GAMBoost, geoCount, Haplin, HiDimMaxStable, minPtest, mlegp, mlgt, MPAgenomics, MPTinR, rgp, saps, TunePareto
agridat, BiodiversityR, CARBayes, eeptools, EnvStats, gamclass, Guerry, HistData, HSAUR3, hSDM, hyperSpec, installr, leafletR, npsp, OpenStreetMap, osmar, playwith, R2BayesX, RcmdrPlugin.qual, remote, RgoogleMaps, RGraphics, rgrs, RNCEP, RObsDat, rpanel, SDMTools, solaR, sperrorest, TSP, VoxR
CollocInfer, e1071, LiblineaR, R.matlab, sna, sprint
BiodiversityR, fBasics, fMultivar, spatstat, taRifx.geo
adehabitat, expp, GSIF, ipdw, maptools, McSpatial, plotKML
ade4, adegenet, BayesX, CARBayes, constrainedKriging, diseasemapping, gamlss.spatial, glmmBUGS, Guerry, McSpatial, prabclus, R2BayesX, seg, spgwr, surveillance
ade4, adegenet, BiodiversityR, plgp, Rcell, surveillance
fuzzyMM, ggmap, GSIF, MARSS, optiRum, optparse, ProjectTemplate, rattle, rfordummies, taRifx, tikzDevice, wsrf
AER, bcp, betareg, dynlm, glogis, lmtest, meboot, partykit, psychotree, sandwich, zoo
BIFIEsurvey, car, GB2, logmult, PracTools, psidR, RDS, SDaA, SvyNom, Zelig
agridat, AICcmodavg, ascii, BB, boot, bpcp, BSquare, CALIBERrfimpute, car, catspec, choplump, clinfun, DAAG, dawai, dlnm, dnet, emil, epade, Epi, exactRankTests, flexmix, gamboostLSS, gap, genSurv, GGally, glmnet, glmulti, gof, grImport, HSAUR, HSAUR2, HSAUR3, imputeYn, ISwR, itree, lava, lmtest, LogrankA, lss, MASS, maxstat, mc2d, mediation, metafor, MetaQC, mgcv, mhurdle, mice, mistat, MuMIn, mvpart, MXM, nutshell, optmatch, pensim, PResiduals, quantreg, R2HTML, rattle, reporttools, riskRegression, rpart, RVAideMemoire, sandwich, SMIR, support.BWS, support.CEs, survey, SvyNom, SweaveListingUtils, tableone, texreg, truncreg, visreg, WGCNA, Zelig
arrayhelpers, distr, gsubfn, hyperSpec, likeLTD, logging, optimx, softclassval, sqldf, svMisc
IPSUR, metafolio, RGraphics, tourr, tourrGui
animation, formatR, highr, knitr, NlsyLinks, REDCapR
CDNmoney, tframePlus, TSdata, TSdbi, TSfame, TSgetSymbol, TShistQuote, TSjson, TSMySQL, TSodbc, TSPostgreSQL, TSsql, TSSQLite, TSxls, TSzip
TScompare, TSdata, TSdbi, TSMySQL, TSsql
bujar, coin, Daim, HSAUR, HSAUR2, HSAUR3, ipred, maxstat, mboost, partDSA, party, partykit, stabs
FatTailsR, gmm, quantmod, TSzip, xts, zoo
Ecdat, Ecfun, tframePlus, TSdbi, TSsql, TSzip, xts, zoo
ade4TkGUI, adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, aplpack, fmri, LogConcDEAD, misc3d, mritc, RcmdrPlugin.SM, RcmdrPlugin.TeachingDemos, relax, ripa, rpanel, RSA, sm, spatstat, sudoku, TeachingDemos
HSAUR2, HSAUR3, koRpus, lsa, movMF, PRISMA, rattle, stm, tau, wordcloud
COBRA, ggdendro, optpart, ROSE, TunePareto
adegenet, geometry, hyperSpec, latticeExtra, quantreg, RSurvey
AER, copula, dyn, FinTS, mFilter, mistat, portes, RTDE, strucchange, TSdata, TSdbi, TSfame, TSMySQL, TSodbc, TSPostgreSQL, TSsql, TSSQLite, xts, zoo
abd, agridat, archetypes, coin, colorspace, extracat, fastR, HSAUR, HSAUR2, HSAUR3, IPSUR, Lahman, mosaic, movMF, party, partykit, pscl, RcmdrPlugin.HH, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, RcmdrPlugin.qual, REdaS, RGraphics, Rz, tableplot, UsingR
betapart, BiodiversityR, cati, codep, eHOF, entropart, mefa, multitable, permute, phylotools, primer, RnavGraph, sads, spaa, vegdata, WeightedCluster, yaImpute
AICcmodavg, catdata, cubfits, isdals, mediation, mnlogit, modeest, MXM, partDSA, sampleSelection, vcdExtra, VGAMdata
Deducer, JGR, RcmdrPlugin.EZR, rfordummies, userfriendlyscience
audited, diveRsity, OpenRepGrid, ProjectTemplate, rattle
arules, bio3d, bReeze, ctv, dcemriS4, dismo, Ecdat, Ecfun, ecospat, fbRanks, FinancialInstrument, Gmisc, GSIF, httr, icd9, installr, io, knitr, kulife, logging, mcr, Mobilize, Ohmage, optiRum, oro.nifti, partykit, PBSmodelling, phenology, QCAGUI, R2SWF, randomForestSRC, randomSurvivalForest, rattle, RCurl, Renext, rgeos, RGraphics, RObsDat, RSurvey, semPLS, soilDB, spartan, SPMS, svUnit, tm, tm.plugin.dc, topicmodels, WikipediR
afex, ascii, BayesFactor, bestglm, blockTools, boostr, CALIBERrfimpute, caper, caschrono, chipPCR, chngpt, CNVassoc, coin, datacheck, dataRetrieval, e1071, evtree, fbRanks, GSE, HiveR, hwriterPlus, JoSAE, knitrBootstrap, krm, kyotil, MARSS, mcmc, micEconCES, multcomp, nFactors, NlsyLinks, NMF, ordinal, phangorn, qtutils, randomLCA, RankAggreg, rbamtools, rcdk, RcmdrPlugin.NMBU, robustbase, RSiena, rtf, SBSA, SeqFeatR, SII, soiltexture, sos4R, spdep, sqlutils, taRifx, TraMineR, TriMatch, waterData
data.table, FRAPO, gstat, hydroPSO, parma, sos4R, tframePlus, TSzip, ustyc, zoo
Amelia, hot.deck, mice, miceadds, SciencesPo
copula, ETLUtils, fda, FRAPO, GGIR, glarma, gsubfn, latticeExtra, meboot, mondate, playwith, pscl, quantreg, RcppRoll, RQuantLib, tframePlus, TSAgg, TSdata, TSdbi, TSfame, TSjson, TSMySQL, TSodbc, TSPostgreSQL, TSsql, TSSQLite, TSxls, TSzip, UsingR, XLConnect