This package contains functions for tight clustering
Algorithm.
Download TIGER/Line shapefiles from the United States Census Bureau
and load into R as 'SpatialDataFrame' objects.
Provides a graphics output device for R that records plots
in a LaTeX-friendly format. The device transforms plotting
commands issued by R functions into LaTeX code blocks. When
included in a LaTeX document, these blocks are interpreted with
the help of 'TikZ'---a graphics package for TeX and friends
written by Till Tantau. Using the 'tikzDevice', the text of R
plots can contain LaTeX commands such as mathematical formula.
The device also allows arbitrary LaTeX code to be inserted into
the output stream.
Methods and classes to build HMMs
that are suitable for the analysis of ChIP-chip data. The
provided parameter estimation methods include the Baum-Welch
algorithm and Viterbi training as well as a combination of
both.
This package is intended for processing the output from
functional gene tiling DNA microarray experiments. It produces
hybridization pattern plots for each gene on the array, and
statistics for each gene including mean probe intensity, median
probe intensity, bright probe fraction, bright segment length
dependent score, bright probe mean intensity, and bright probe
median intensity. Output is generated in order of bright
segment length dependent score in both a latex/eps format and
tab-delimited text file. The package works in two modes: single
array, and comparison of two arrays. Array comparison includes
array comparison statistics: median of logarithm of one array
probe divided by its counterpart on the other array, median
absolute deviation of that value, and the binomial test to see
whether the genes are equally abundant in both arrays.
Environment for teaching
"Financial Engineering and Computational Finance".
Managing chronological and calendar objects.
We provide a toolbox to estimate the time delay between the brightness time series of gravitationally lensed quasar images via Bayesian and profile likelihood approaches. The model is based on a state-space representation for  irregularly observed time series data generated from a latent continuous-time Ornstein-Uhlenbeck process. Our Bayesian method adopts scientifically motivated hyper-prior distributions and a Metropolis-Hastings within Gibbs sampler, producing posterior samples of the model parameters that include the time delay. A profile likelihood of the time delay is a simple approximation to the marginal posterior distribution of the time delay. Both Bayesian and profile likelihood approaches complement each other, producing almost identical results; the Bayesian way is more principled but the profile likelihood is easier to implement.
Provides an easy-to-use wrapper to Rprof() and
summaryRprof() in the profiling of both function calls and
whole blocks of code.
Implements the Time Machine, a simulation approach for stochastic
trees.
Methods for incorporating time into network analysis. Construction of time-ordered networks (temporal graphs). Shortest-time and shortest-path-length analyses. Resource spread calculations. Data resampling and rarefaction for null model construction. Reduction to time-aggregated networks with variable window sizes; application of common descriptive statistics to these networks. Vector clock latencies. Plotting functionalities.
Extract useful time components of a date object, such as
day of week, weekend, holiday, day of month, etc, and put it in
a data frame.  This can be used to create many predictor
variables out of a single time variable, which can then be used
in a regression or decision tree.  Also includes function
plotCalendarHeatmap which draws a calendar and overlays a
heatmap based on values.
Programs for Martinussen and Scheike (2006), `Dynamic Regression
Models for Survival Data', Springer Verlag.  Plus more recent developments.
Additive survival model, semiparametric proportional odds model, fast cumulative
residuals, excess risk models and more. Flexible competing risks regression
including GOF-tests. Two-stage frailty modelling.
PLS for the additive risk model. Lasso in the 'ahaz' package.
Estimation of time-dependent ROC curve and area under time dependent ROC curve (AUC) in the presence of censored data, with or without competing risks. Confidence intervals of AUCs and tests for comparing AUCs of two rival markers measured on the same subjects can be computed, using the iid-representation of the AUC estimator. Plot functions for time-dependent ROC curves and AUC curves are provided. Time-dependent Positive Predictive Values (PPV) and Negative Predictive Values (NPV) can also be computed.
Computes bootstrap CI for the sample ACF and periodogram
Uses a negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.
Environment for teaching
"Financial Engineering and Computational Finance".
Managing financial time series objects.
Store and organize a large amount of low frequency time series data.
The package was designed to manage a large catalog of official statistics which are
typically published on monthly, quarterly or yearly basis. Thus timeseriesdb is
optimized to handle a large number of lower frequency time series as opposed to a
smaller amount of high frequency time series such as real time data from measuring devices.
Hence timeseriesdb provides the opportunity to store extensive multi-lingual
meta information. The package also provides a web GUI to explore the underlying
PostgreSQL database interactively.
Objects to manipulate sequential and seasonal time series. Sequential time series based on time instants and time durations are handled. Both can be regularly or unevenly spaced (overlapping durations are allowed). Only POSIX* format are used for dates and times. The following classes are provided : 'POSIXcti', 'POSIXctp', 'TimeIntervalDataFrame', 'TimeInstantDataFrame', 'SubtimeDataFrame' ; methods to switch from a class to another and to modify the time support of series (hourly time series to daily time series for instance) are also defined. Tools provided can be used for instance to handle environmental monitoring data (not always produced on a regular time base).
A interface to the TimeTree of Life Webpage (www.timetree.org). TimeTree is a public database for information on the evolutionary timescale of life. This package includes functions for searching divergence time for  taxa or all nodes of a phylogeny.
Date sequence, relative date calculations, and date manipulation with business days
and holidays.  Works with Date and POSIXt classes.
Prediction and ranking of drug combinations based on their drug-target interaction profiles and single-drug sensitivities in a given cancer cell line or patient-derived sample.
A problem-solving environment (PSE) for fitting
separable nonlinear models to measurements arising in physics
and chemistry experiments; has been extensively applied to
time-resolved spectroscopy and FLIM-FRET data.
Functions for statistical analysis, prediction and control of time series.
A universal non-uniform random number generator
for quite arbitrary distributions with piecewise twice
differentiable densities.
Non-parametric resampling-based inference tests for TExPosition.
Assist performing tip-dating of phylogenetic trees with BEAST.
TIPOM is based on a methodology that was developed in the
1960s by Bernardino Bagolini. The basic idea is to use
the three simple dimensions of length, width and thickness
of each lithic artefact to classify them in discrete
groups and infer their function.
Functions and S3 classes for time indexes and time indexed
series, which are compatible with FAME frequencies.
GUI to analyze mass spectrometric data on the relative
abundance of two substances from a titration series.
Uses indicator species scores across binary partitions of
a sample set to detect congruence in taxon-specific changes of abundance
and occurrence frequency along an environmental gradient as evidence of
an ecological community threshold.  Relevant references include: Baker,
ME and RS King. 2010. A new method for detecting and interpreting
biodiversity and ecological community thresholds.  Methods in Ecology and
Evolution 1(1): 25:37. King, RS and ME Baker. 2010. Considerations for
identifying and interpreting ecological community thresholds.  Journal
of the North American Benthological Association 29(3):998-1008. Baker ME
and RS King. 2013. Of TITAN and straw men: an appeal for greater
understanding of community data. Freshwater Science 32(2):489-506.
This data set provides information on the fate of passengers on
the fatal maiden voyage of the ocean liner "Titanic", summarized according
to economic status (class), sex, age and survival. Whereas the base R
Titanic data found by calling data("Titanic") is an array resulting from
cross-tabulating 2201 observations, these data sets are the individual
non-aggregated observations and formatted in a machine learning context
with a training sample, a testing sample, and two additional data sets
that can be used for deeper machine learning analysis. These data sets
are also the data sets downloaded from the Kaggle competition and thus
lowers the barrier to entry for users new to R or machine learing.
A collection of functions to plot acid/base titration
curves (pH vs. volume of titrant), complexation titration curves
(pMetal vs. volume of EDTA), redox titration curves (potential
vs.volume of titrant), and precipitation titration curves (either
pAnalyte or pTitrant vs. volume of titrant). Options include the
titration of mixtures, the ability to overlay two or more
titration curves, and the ability to show equivalence points.
Pairwise evolutionary distance estimation between protein sequences with the TKF91 and TKF92 model, which consider all the possible paths of transforming from one sequence to another.
simple mechanism for placing R graphics in a Tk widget
Contains functions for training and applying two-level random forest and hidden Markov models for human behavior classification from raw tri-axial accelerometer and/or GPS data. Includes functions for training a two-level model, applying the model to data, and computing performance.
A series of function to make thermoluminescence dating using the MAAD or the SAR protocol.
This package completes the R package "Luminescence."
TLE implements a general framework for robust fitting of
finite mixture models. Parameter estimation is performed using
the EM algorithm.
Computation of effects under linear, logistic and Poisson regression models with transformed variables. Logarithm and power transformations are allowed. Effects can be displayed both numerically and graphically in both the original and the transformed space of the variables.
Fit a linear mixed effects model for censored data with
Student-t or normal distributions. The errors are assumed
independent and identically distributed.
Functions for two level normal models as described in
Everson and Morris (2000). J. R. Statist. Soc. B, 62 prt 2,
pp.399--412.
A framework for text mining applications within R.
Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
With this tool, a user should be able to quickly implement complex
random effect models through simple C++ templates. The package combines
CppAD (C++ automatic differentiation), Eigen (templated matrix-vector
library) and CHOLMOD (sparse matrix routines available from R) to obtain an
efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through BLAS and parallel user templates.
Provides an R-interface to the TMDb API (see TMDb API on <http://docs.themoviedb.apiary.io/#>). The Movie Database (TMDb) is a popular user editable database for movies and TV shows (see <https://www.themoviedb.org>).
Random number generation of truncated multivariate Gaussian distributions using Hamiltonian Monte Carlo. The truncation is defined using linear and/or quadratic polynomials.
Miscellaneous data and utility functions
for manipulating data and your R environment.
tmle implements targeted maximum likelihood estimation, first described in van der Laan and Rubin, 2006 (Targeted Maximum Likelihood Learning, The International Journal of biostatistics, 2(1), 2006.  This version adds the tmleMSM function to the package, for estimating the parameters of a marginal structural model (MSM) for a binary point treatment effect.  The tmle function calculates the adjusted marginal difference in mean outcome associated with a binary point treatment, for continuous or binary outcomes.  Relative risk and odds ratio estimates are also reported for binary outcomes. Missingness in the outcome is allowed, but not in treatment assignment or baseline covariate values. Effect estimation stratified by a binary mediating variable is also available. The population mean is calculated when there is missingness, and no variation in the treatment assignment.  An ID argument can be used to identify repeated measures. Default settings call SuperLearner to estimate the Q and g portions of the likelihood, unless values or a user-supplied regression function are passed in as arguments.
Estimation of average causal effects for single time point
interventions in network-dependent data (e.g., in the presence of spillover
and/or interference). Supports arbitrary interventions (static or
stochastic). Implemented estimation algorithms are the targeted maximum
likelihood estimation (TMLE), the inverse-probability-of-treatment (IPTW)
estimator and the parametric G-computation formula estimator. Asymptotically
correct influence-curve-based confidence intervals are constructed for the
TMLE and IPTW. The data are assumed to consist of rows of unit-specific
observations, each row i represented by variables (F.i,W.i,A.i,Y.i), where
F.i is a vector of friend IDs of unit i (i's network), W.i is a vector of
i's baseline covariates, A.i is i's exposure (can be binary, categorical or
continuous) and Y.i is i's binary outcome. Exposure A.i depends on
(multivariate) user-specified baseline summary measure(s) sW.i, where sW.i
is any function of i's baseline covariates W.i and the baseline covariates
of i's friends in F.i. Outcome Y.i depends on sW.i and (multivariate)
user-specified summary measure(s) sA.i, where sA.i is any function of i's
baseline covariates and exposure (W.i,A.i) and the baseline covariates and
exposures of i's friends. The summary measures are defined with functions
def.sW and def.sA. See ?'tmlenet-package' for a general overview.
Targeted minimum loss estimation (TMLE) of a non-parametric variable importance measure of a continuous exposure 'X' on an outcome 'Y', taking baseline covariates 'W' into account.
The tmod package contains definitions of human blood
transcriptional modules and tools to analyse them.
This package provides a tm Source to create corpora from
a corpus prepared in the format used by the Alceste application (i.e.
a single text file with inline meta-data). It is able to import both
text contents and meta-data (starred) variables.
A plug-in for the text mining framework tm to support text mining
in a distributed way. The package provides a convenient interface for
handling distributed corpus objects based on distributed list objects.
Provides a 'tm' Source to create corpora from
articles exported from the 'Europresse' content provider as
HTML files. It is able to read both text content and meta-data
information (including source, date, title, author and pages).
This package provides a tm Source to create corpora from
articles exported from the Dow Jones Factiva content provider as
XML or HTML files. It is able to read both text content and meta-data
information (including source, date, title, author, subject,
geographical coverage, company, industry, and various
provider-specific fields).
Provides a tm Source to create corpora from
articles exported from the LexisNexis content provider as
HTML files. It is able to read both text content and meta-data
information (including source, date, title, author and pages).
A plug-in for the tm text mining framework providing mail handling
functionality.
Facilitate text retrieval from feed
formats like XML (RSS, ATOM) and JSON. Also direct retrieval from
HTML is supported. As most (news) feeds only incorporate small
fractions of the original text tm.plugin.webmining even retrieves
and extracts the text of the original text source.
Trauma Mortality prediction for ICD-9, ICD-10, and AIS lexicons in
long or wide format based on Dr. Alan Cook's tmpm mortality model.
Importance sampling from the truncated multivariate normal using the GHK (Geweke-Hajivassiliou-Keane) simulator.
Unlike Gibbs sampling which can get stuck in one truncation sub-region depending on initial values, this package allows
truncation based on disjoint regions that are created by truncation of absolute values. The GHK algorithm uses simple Cholesky
transformation followed by recursive simulation of univariate truncated normals hence there are also no convergence issues.
Importance sample is returned along with sampling weights, based on which, one can calculate integrals over truncated regions
for multivariate normals.
Random number generation for the truncated multivariate normal and Student t distribution.
Computes probabilities, quantiles and densities,
including one-dimensional and bivariate marginal densities. Computes first and second moments (i.e. mean and covariance matrix) for the double-truncated multinormal case.
Temporal and cross-sectional network autocorrelation models (TNAM).
R package for analyzing weighted, two-mode, and longitudinal networks.
A consistent set of tools to perform in-database analytics
on Teradata Aster Big Data Discovery Platform. toaster (a.k.a 'to Aster')
embraces simple 2-step approach: compute in Aster - visualize and analyze
in R. Its `compute` functions use combination of SQL and
SQL/MR functions running in Aster database - highly scalable parallel
and distributed analytical platform. Then `create` functions visualize
results with boxplots, scatterplots, histograms, heatmaps, word clouds,
maps, or slope graphs. Advanced options such as faceting, coloring,
labeling, and others are supported with most functions.
Construction of the Total Operating Characteristic (TOC) Curve and the Receiver (aka Relative) Operating Characteristic (ROC) Curve for spatial and non-spatial data. The TOC method is a modification of the ROC method which measures the ability of an index variable to diagnose either presence or absence of a characteristic. The diagnosis depends on whether the value of an index variable is above a threshold. Each threshold generates a two-by-two contingency table, which contains four entries: hits (H), misses (M), false alarms (FA), and correct rejections (CR). While ROC shows for each threshold only two ratios, H/(H + M) and FA/(FA + CR), TOC reveals the size of every entry in the contingency table for each threshold (Pontius Jr., R.G., Si, K. 2014. The total operating characteristic to measure diagnostic ability for multiple thresholds. Int. J. Geogr. Inf. Sci. 28 (3), 570-583).
Convert natural language text into tokens. The tokenizers have a
consistent interface and are compatible with Unicode, thanks to being built
on the 'stringi' package. Includes tokenizers for shingled n-grams, skip
n-grams, words, word stems, sentences, paragraphs, characters, lines, and
regular expressions.
Imports the fundamental definitions and utilities of the Time Oriented Language (TOL), focused on time series analysis and stochastic processes, and provides the basis for the integration of TOL in R. See <https://www.tol-project.org> for more information about the TOL project.
Statistical tolerance limits provide the limits between which we can expect to find a specified proportion of a sampled population with a given level of confidence.  This package provides functions for estimating tolerance limits for various distributions.  Plotting is also available for tolerance limits of continuous random variables.
Function for converting cardinal to ordinal numbers by adding a language specific ordinal indicator (http://en.wikipedia.org/wiki/Ordinal_indicator) to the number.
Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models
(CTM) by David M. Blei and co-authors and the C++ code
for fitting LDA models using Gibbs sampling by Xuan-Hieu
Phan and co-authors.
For multiple ranked input lists (full or partial) representing the same set of N objects, the package TopKLists offers (1) statistical inference on the lengths of informative top-k lists, (2) stochastic aggregation of full or partial lists, and (3) graphical tools for the statistical exploration of input lists, and for the visualization of aggregation results.
Set of hydrological functions including an R
implementation of the hydrological model TOPMODEL, which is
based on the 1995 FORTRAN version by Keith Beven. From version
0.7.0, the package is put into maintenance mode. New functions
for hydrological analysis are now developed as part of the
RHydro package. RHydro can be found on R-forge and is built on
a set of dedicated S4 classes.
Using Gaussian graphical models we propose a novel approach to
perform pathway analysis using gene expression. Given the
structure of a graph (a pathway) we introduce two statistical
tests to compare the mean and the concentration matrices between
two groups. Specifically, these tests can be performed on the
graph and on its connected components (cliques).
Evaluation of alternatives based on multiple criteria using TOPSIS method.
Fit an Instrumental Variables Two Stage Least Squares model
Quantifies how balanced a phylogenetic tree is, using the Total Cophenetic Index
- per A. Mir, F. Rossello, L. A. Rotger (2013), A new balance index for phylogenetic trees.
Math. Biosci. 241, 125-136 <DOI:10.1016/j.mbs.2012.10.005>.
Implements geodesic interpolation and basis
generation functions that allow you to create new tour
methods from R.
The GUI allows user to control the tour by checkboxes for
the variable selection, slider for the speed, and toggle boxes
for pause.
Calculates sample size and dose allocation for binary toxicity
tests, using the Fish Embryo Toxicity Test as example.
An optimal test design is obtained by running
(i) spoD (calculate the number of individuals to test under control
conditions), (ii) setD (estimate the minimal sample size per treatment
given the users precision requirements) and (iii) doseD (construct
an individual dose scheme).
This package implements the greedy approximation for tree
preserving embedding.
Estimation of transition probabilities for the illness-death model. Both the Aalen-Johansen estimator for a Markov model and a novel non-Markovian estimator (de Una-Alvarez and Meira-Machado, 2015) are included.
Estimation of transition probabilities for the
illness-death model and or the three-state progressive model.
Regression models for temporal process responses with
time-varying coefficient.
Plant ecologists often need to collect "traits" data
about plant species which are often scattered among various
databases: TR8 contains a set of tools which take care of
automatically retrieving some of those functional traits data
for plant species from publicly available databases (Biolflor,
The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg
values for Italian Flora, Mycorrhizal intensity databases, Catminat, BROT,
PLANTS, Jepson Flora Project).
The TR8 name, inspired by "car plates" jokes, was chosen since
it both reminds of the main object of the package and is
extremely short to type.
Contains functions to standardize tracheid profiles
using the traditional method (Vaganov) and a new method to standardize
tracheidograms based on the relative position of tracheids within tree rings.
Automatically stores objects in files on disk
so that files are rewritten when objects are changed, and
so that objects are accessible but do not occupy memory
until they are accessed. Keeps track of times when objects
are created and modified, and caches some basic
characteristics of objects to allow for fast summaries of
objects.  Also provides a command history mechanism that
saves the last command to a history file after each
command completes.
The aim of this package is to provide infrastructure for handling running and cycling
data from GPS-enabled tracking devices. After extraction and appropriate
manipulation of the training or competition attributes, the data are placed
into session-based and unit-aware data objects of class trackeRdata (S3 class). The
information in the resultant data objects can then be visualised, summarised,
and analysed through corresponding flexible and extensible methods.
Reconstructs animal tracks from magnetometer, accelerometer, depth and optional speed data.  Designed primarily using data from Wildlife Computers Daily Diary tags deployed on northern fur seals.
The tractor.base package consists of functions for working with magnetic resonance images. It can read and write image files stored in Analyze, NIfTI, MGH and DICOM formats (DICOM support is read only), generate images for use as regions of interest, and manipulate and visualise images.
Tree Ring Analysis of Disturbance Events in R (TRADER) package provides only one way for disturbance reconstruction from tree-ring data.
An interface for creating GUIs modeled in part after the
traits UI module for python. The basic design takes advantage of
the model-view-controller design pattern. The interface makes basic
dialogs quite easy to produce.
Species trait data from many different sources, including
sequence data from 'NCBI', plant trait data from 'BETYdb', invasive species
data from the Global Invasive Species Database and 'EOL', 'Traitbank' data
from 'EOL', Coral traits data from http://coraltraits.org, 'nativity' status
('Flora Europaea' or 'ITIS'), and 'Birdlife' International.
Implements a predictive model of community assembly called 'Traitspace' (Laughlin et al. 2012, Ecology Letters). Traitspace is a hierarchical Bayesian model that translates the theory of trait-based environmental filtering into a statistical model that incorporates intraspecific trait variation to predict the relative abundances and the distributions of species.
The package includes functions to plot the predicted and the observed values. It also includes functions to compare the predicted values against the observed values using a variety of different distance measures and to implement permutation tests to test their statistical significance.
Implements the three-step procedure proposed by Leffondree et al. (2004) to identify clusters of individual longitudinal trajectories. The procedure involves (1) calculating 24 measures describing the features of the trajectories; (2) using factor analysis to select a subset of the 24 measures and (3) using cluster analysis to identify clusters of trajectories, and classify each individual trajectory in one of the clusters.
Classes and methods for trajectory data, with nested classes for individual trips, and collections for different entities. Methods include selection, generalization, aggregation, intersection, and plotting.
Toolbox for the manipulation, description and rendering of sequences, and more generally the mining of sequence data in the field of social sciences. Although the toolbox is primarily intended for analyzing state or event sequences that describe life courses such as family formation histories or professional careers, its features also apply to many other kinds of categorical sequence data. It accepts many different sequence representations as input and provides tools for converting sequences from one format to another. It offers several functions for describing and rendering sequences, for computing distances between sequences with different metrics (among which optimal matching), original dissimilarity-based analysis tools, and simple functions for extracting the most frequent subsequences and identifying the most discriminating ones among them. A user's guide can be found on the TraMineR web page.
Collection of ancillary functions and utilities to be used in conjunction with the TraMineR package for sequence data exploration. Most of the functions are in test phase, lack systematic consistency check of the arguments and are subject to changes. Once fully checked, some of the functions of this collection could be included in a next release of TraMineR.
TRAMPR is an R package for matching terminal restriction
fragment length polymorphism (TRFLP) profiles between unknown
samples and a database of knowns.  TRAMPR facilitates analysis
of many unknown profiles at once, and provides tools for
working directly with electrophoresis output through to
generating summaries suitable for community analyses with R's
rich set of statistical functions.  TRAMPR also resolves the
issues of multiple TRFLP profiles within a species, and shared
TRFLP profiles across species.
Transcribes audio to text with the HP IDOL API. Includes functions to upload files,
retrieve transcriptions, and monitor jobs.
Estimates the transfer entropy from one time series to another, where each time series consists of continuous random variables. The transfer entropy is an extension of mutual information which takes into account the direction of information flow, under the assumption that the underlying processes can be described by a Markov model. Two estimation methods are provided. The first calculates transfer entropy as the difference of mutual information. Mutual information is estimated using the Kraskov method, which builds on a nearest-neighbor framework (see package references). The second estimation method estimate transfer entropy via the a generalized correlation sum.
Bindings for the Google Translate API v2
translateR provides easy access to the Google and Microsoft APIs. The package is easy to use with the related R package "stm" for the estimation of multilingual topic models.
Package with translated commands of SPSS. The usage is oriented
on the handling of SPSS-Syntax. Mainly the package has two purposes:
It facilitates SPSS-Users to change over to R and aids migration projects from SPSS to R.
R  version 2.1.0 and later support Korean translations of program messages.  The continuous efforts have been made by <http://developer.r-project.org/TranslationTeams.html>   The R Documentation files are licensed under the General Public License, version 2 or 3.   This means that the pilot project to translate them into Korean has permission to reproduce them and translate them.  This work is done with GNU 'gettext' utilities.  The portable object template is updated a weekly basis or whenever changes are necessary.  Comments and corrections via email to the maintainer is of course most welcome.   In order to voluntarily participate in or offer your help with this translation, please contact the maintainer.   To check the change and progress of Korean translation, please visit <http://www.openstatistics.net>.
A unified estimation procedure for the analysis of censored data using linear transformation models.
Implementation of two transportation problem algorithms.
1. North West Corner Method
2. Minimum Cost Method or Least cost method.
For more technical details about the algorithms please refer below URLs.
<http://www.universalteacherpublications.com/univ/ebooks/or/Ch5/nw.htm>.
<http://personal.maths.surrey.ac.uk/st/J.F/chapter7.pdf>.
Solve optimal transport problems in statistics. Compute Wasserstein metrics (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p metrics), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, point patterns, and mass vectors.
The trapezoid package provides dtrapezoid, ptrapezoid,
qtrapezoid, and rtrapezoid functions for the trapezoidal
distribution.
Transmission Ratio Distortion (TRD) is a genetic phenomenon where the two alleles from either parent are not transmitted to the offspring at the expected 1:1 ratio under Mendelian inheritance, leading to spurious signals in genetic association studies. Functions in this package are developed to account for this phenomenon using loglinear model and Transmission Disequilibrium Test (TDT). Some population information can also be calculated.
Evaluate the performance of markers used to guide treatment selection decisions. Package includes functions to plot risk curves, evaluate marker performance, assess model calibration, and compare markers.
Utilities to investigate sensitivity to unmeasured confounding in parametric models with either binary or continuous treatment.
Interface to the API for 'TreeBASE' (http://treebase.org)
from 'R.' 'TreeBASE' is a repository of user-submitted phylogenetic
trees (of species, population, or genes) and the data used to create
them.
Bootstrapped response and correlation functions,
seasonal correlations and evaluation of reconstruction
skills for use in dendroclimatology and dendroecology.
Create a measure of inter-point dissimilarity useful
for clustering mixed data, and, optionally, perform the clustering.
The centre of mass is a crucial data for arborists in order to
consolidate a tree using steel or dynamic cables. Given field-recorded data
on branchiness of a tree, the package: (i) computes and plots the centre of
mass of the tree itself, (ii) computes branches slenderness coefficient in
order to aid the arborist identify potentially dangerous branches, and
(iii) computes the force acting on a ground plinth and its best position
relating to the tree centre of mass, should the tree need to be stabilized
by a steel cable.
Treelets provides a novel construction of multi-scale bases that extends
wavelets to non-smooth signals. It returns a multi-scale orthonormal
basis, where the final computed basis functions are supported
on nested clusters in a hierarchical tree.  Both the tree and
the basis, which are constructed simultaneously, reflect the
internal structure of the data.
A treemap is a space-filling visualization of hierarchical
structures. This package offers great flexibility to draw treemaps.
(i) For a given species phylogeny on present day data which is calibrated to calendar-time, a method for estimating maximum likelihood speciation and extinction processes is provided. The method allows for non-constant rates. Rates may change (1) as a function of time, i.e. rate shifts at specified times or mass extinction events (likelihood implemented as LikShifts, optimization as bd.shifts.optim and visualized as bd.shifts.plot) or (2) as a function of the number of species, i.e. density-dependence (likelihood implemented as LikDD and optimization as bd.densdep.optim) or (3) extinction rate may be a function of species age (likelihood implemented as LikAge and optimization as bd.age.optim.matlab). Note that the methods take into account the whole phylogeny, in particular it accounts for the "pull of the present" effect. (1-3) can take into account incomplete species sampling, as long as each species has the same probability of being sampled. For a given phylogeny on higher taxa (i.e. all but one species per taxa are missing), where the number of species is known within each higher taxa, speciation and extinction rates can be estimated under model (1) (implemented within LikShifts and bd.shifts.optim with groups !=0). (ii) For a given phylogeny with sequentially sampled tips, e.g. a virus phylogeny, rates can be estimated under a model where rates vary across time using bdsky.stt.optim based on likelihood LikShiftsSTT (extending LikShifts and bd.shifts.optim). Furthermore, rates may vary as a function of host types using LikTypesSTT (multitype branching process extending functions in R package diversitree). This function can furthermore calculate the likelihood under an epidemiological model where infected individuals are first exposed and then infectious.
An implementation of permutation tests in R, supporting both exact and asymptotic K sample test of data locations. The p value of exact tests is found using tree algorithms. Tree algorithms treat permutations of input data as tree nodes and perform constraint depth-first searches for permutations that fall into the critical region of a test systematically. Pruning of tree search and optimisations at C level enable exact tests for certain large data sets.
Matches phylogenetic trees and trait data, and
allows simultaneous manipulation of the tree and data using 'dplyr'.
Tools for the exploration of distributions of phylogenetic trees.
This package includes a shiny interface which can be started from R using
'treescapeServer()'.
Simulation methods for phylogenetic trees where (i) all tips are sampled at one time point or (ii) tips are sampled sequentially through time. (i) For sampling at one time point, simulations are performed under a constant rate birth-death process, conditioned on having a fixed number of final tips (sim.bd.taxa()), or a fixed age (sim.bd.age()), or a fixed age and number of tips (sim.bd.taxa.age()). When conditioning on the number of final tips, the method allows for shifts in rates and mass extinction events during the birth-death process (sim.rateshift.taxa()). The function sim.bd.age() (and sim.rateshift.taxa() without extinction) allow the speciation rate to change in a density-dependent way. The LTT plots of the simulations can be displayed using LTT.plot(), LTT.plot.gen() and LTT.average.root(). TreeSim further samples trees with n final tips from a set of trees generated by the common sampling algorithm stopping when a fixed number m>>n of tips is first reached (sim.gsa.taxa()). This latter method is appropriate for m-tip trees generated under a big class of models (details in the sim.gsa.taxa() man page). For incomplete phylogeny, the missing speciation events can be added through simulations (corsim()). (ii) sim.rateshifts.taxa() is generalized to sim.bdsky.stt() for serially sampled trees, where the trees are conditioned on either the number of sampled tips or the age. Furthermore, for a multitype-branching process with sequential sampling, trees on a fixed number of tips can be simulated using sim.bdtypes.stt.taxa(). This function further allows to simulate under epidemiological models with an exposed class. The function sim.genespeciestree() simulates coalescent gene trees within birth-death species trees, and sim.genetree() simulates coalescent gene trees.
The package is a flexible simulation tool for phylogenetic trees under a general model. It is possible to assume any probability distribution for the waiting time until speciation and extinction independently. Thus, TreeSimGM allows to simulate stochastic phylogenetic trees using any probability distribution and parameters for speciation and  extinction. The speciation modes have all binary splits and are: (i) symmetric, where for every speciation event new waiting times until speciation and extinction are drawn for both daughter lineages; and (ii) asymmetric, where a speciation event results in one species with new waiting times, and another that carries the extinction time and age of its ancestor. Those two modes were inspired by allopatric and peripatric speciation respectively.Both models (symmetric and asymmetric) were created and implemented so that different processes (distributions) for speciation and extinction could be independently and explicitly specified. It is also possible to have an implicit extinction process by setting the extinction rate to zero.
This package implements TreeThresh, a locally adaptive
version of EbayesThresh.
An extension of Trellis Display that enables creation,
organization, and interactive viewing of multi-panel displays created
against potentially very large data sets.  The dynamic viewer tiles
panels of a display across the screen in a web browser and allows the
user to interactively page through the panels and sort and filter them
based on "cognostic" metrics computed for each panel.  Panels can be
created using many of R's plotting capabilities, including base R
graphics, 'lattice', 'ggplot2', and many 'htmlwidgets'.  Conditioning is
handled through the 'datadr' package, which enables 'Trelliscope' displays
with potentially millions of panels to be created against terabytes of
data on systems like 'Hadoop'.  While designed to scale, 'Trelliscope'
displays can also be very useful for small data sets.
The analysis of environmental data often requires
the detection of trends and change-points.
This package provides the Mann-Kendall Trend Test,
seasonal Mann-Kendall Test,
correlated seasonal Mann-Kendall Test,
partial Mann-Kendall Trend test,
(Seasonal) Sen's slope, partial correlation trend test and
change-point test after Pettitt.
functions and examples in Sample Size Calculation in
Clinical Research.
Provides the "r, q, p, and d" distribution functions for the triangle distribution.
Tribology test devices such as pin-on-disk, ball-on-disk machines and profilometers give important data for tribological analysis. trib is built to analyze and visualize that data into human understandable form. It has functions for finding coefficient of friction, Friction Force vs Distance graphs and calculating Wear Track Volume and Wear Track plotting.
The package contains routines to 1) project unity-summed
triples to unit-square doubles and vice versa, 2) make a grid
of unity-summed triples paired to doubles, 3) evaluate a
function over the grid and 4) make simple plots including
ternary contour plots over a grid of values.
Propensity score matching for non-binary treatments.
Provides various commonly-used response time trimming
methods, including the recursive / moving-criterion methods reported by
Van Selst and Jolicoeur (1994). By passing trimming functions raw data files,
the package will return trimmed data ready for inferential testing.
Creates point and probability forecasts from the trees in a random forest using a trimmed opinion pool.
The package contains functions that 1) estimates
gene-environment interaction between a SNP and a continuous
non-genetic attribute by fitting a generalized additive model
to case-parent trio data, 2) produces graphical displays of
estimated interaction, 3) performs permutation test of
gene-environment interaction; 4) simulates informative
case-parent trios.
Functions for accessing and manipulating spatial data for animal
tracking, with straightforward coercion from and to other formats. Filter
for speed and create time spent maps from animal track data.
A constrained two-dimensional Delaunay triangulation package
providing both triangulation and generation of voronoi mosaics of
irregular spaced data.
Data handling and estimation functions for animal movement
estimation from archival or satellite tags. Helper functions are included
for making image summaries binned by time interval from Markov Chain Monte Carlo
simulations.
Social Relation Model (SRM) analyses for single or multiple
round-robin groups are performed. These analyses are either based on one
manifest variable, one latent construct measured by two manifest variables,
two manifest variables and their bivariate relations, or two latent
constructs each measured by two manifest variables. Within-group t-tests
for variance components and covariances are provided for single groups.
For multiple groups two types of significance tests are provided:
between-groups t-tests (as in SOREMO) and enhanced standard errors based on
Lashley and Bond (1997). Handling for missing values is provided.
A new bioinformatic tool for comparing transcriptomes of two biological samples from the same or different species. The mapping is conducted based on the overlap of the associated genes of different samples. More examples and detailed explanations are available in the vignette.
Class definitions and constructors for pseudo-vectors containing
all permutations, combinations and subsets of objects taken from a vector.
Simplifies working with structures commonly encountered in combinatorics.
Functions and datasets for the reader of the book "The R Software: Fundamentals of Programming and Statistical Analysis".
An implementation of the TrueSkill algorithm (Herbrich,
R., Minka, T. and Grapel, T) in R; a Bayesian skill rating
system with inference by approximate message passing on a
factor graph. Used by Xbox to rank gamers and identify
appropriate matches.
http://research.microsoft.com/en-us/projects/trueskill/default.aspx
Current version allows for one player per team. Will update as
time permits.  Requires R version 3.0 as it is written with
Reference Classes.  URL:
https://github.com/bhoung/trueskill-in-r Acknowledgements to
Doug Zongker and Heungsub Lee for their python implementations
of the algorithm and for the liberal reuse of Doug's code
comments (@dougz and @sublee on github).
A collection of functions to deal with the truncated univariate and multivariate normal distributions.
A collection of functions to evalue probability density
functions, cumulative distribution functions, quantile
functions and random numbers for truncated random variables.
Functions are provided to also compute the expected value and
variance. Nadarajah and Kotz (2006) developed most of the
functions. QQ plots can be produced.  All the probability
functions in the stats, stats4 and evd packages are
automatically available for truncation..
Goodness-of-fit tests and some adjusted exploratory tools
allowing for left truncated data
r/d/p/q functions for the truncated normal distribution
Estimation of models for truncated Gaussian variables by maximum likelihood.
Semi-parametric estimation of truncated linear regression models
Does local optimization using two derivatives and trust regions.
Guaranteed to converge to local minimum of objective function.
Trust region algorithm for nonlinear optimization.  Efficient when the Hessian of the objective function is sparse (i.e., relatively few nonzero cross-partial derivatives).
Contains R functions and datasets detailed in the book
"Time Series Analysis with Applications in R (second edition)"
by Jonathan Cryer and Kung-Sik Chan
Tsallis distribution also known as the q-exponential family distribution. Provide distribution d, p, q, r functions, fitting and testing functions. Project initiated by Paul Higbie and based on Cosma Shalizi's code.
The tsbridge package contains a collection of R functions that can be used to estimate normalising constants using the bridge sampler of Meng and Wong (1996). The functions can be applied to calculate posterior model probabilities for a variety of time series Bayesian models, where parameters are estimated using BUGS, and models themselves are created using the tsbugs package.
Different estimates are provided to solve the blind source separation problem for time series with stochastic volatility.
The tsbugs package contains a collection of R functions
that can be used to create time series BUGS models of various
order. Included are function to create BUGS with non-constant
variance such stochastic volatility models and random variance
shift models.
Performs the two-sample comparisons using the following exact test procedures: the exact likelihood-ratio test (LRT) for equality of two normal populations proposed in Zhang et al. (2012); the combined test based on the LRT and Shapiro-Wilk test for normality via the Bonferroni correction technique; the newly proposed density-based empirical likelihood (DBEL) ratio test. To calculate p-values of the DBEL procedures, three procedures are used: (a) the traditional Monte Carlo (MC) method implemented in C++, (b) a new interpolation method based on regression techniques to operate with tabulated critical values of the test statistic; (c) a Bayesian type method that uses the tabulated critical values as the prior information and  MC generated DBEL-test-statistic's values as data.
This package contains a set of measures of dissimilarity between time series to perform time series clustering. Metrics based on raw data, on generating models and on the forecast behavior are implemented. Some additional utilities related to time series clustering are also provided, such as clustering algorithms and cluster evaluation metrics.
Utilities for comparing the equality of series on two databases.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Likelihood-based methods for model fitting and assessment, prediction and intervention analysis of count time series following generalized linear models are provided. Models with the identity and with the logarithmic link function are allowed. The conditional distribution can be Poisson or Negative Binomial.
Illustrates the various 'TSdbi' packages with a vignette using time series
data from several sources. The vignette also illustrates some simple time series
manipulation and plotting using packages 'tframe' and 'tfplot'.
Provides a common interface to time series databases. The
objective is to define a standard interface so users can retrieve time
series data from various sources with a simple, common, set of
commands, and so programs can be written to be portable with respect
to the data source. The SQL implementations also provide a database
table design, so users needing to set up a time series database
have a reasonably complete way to do this easily. The interface
provides for a variety of options with respect to the representation
of time series in R. The interface, and the SQL implementations, also
handle vintages of time series data (sometime called editions or
realtime data). There is also a (not yet well tested) mechanism to
handle multilingual data documentation.
Comprehensive examples of all the TS* packages is provided in the
vignette Guide.pdf with the TSdata package.
A set of commonly used distance measures and some additional functions which, although initially not designed for this purpose, can be used to measure the dissimilarity between time series. These measures can be used to perform clustering, classification or other data mining tasks which require the definition of a distance measure between time series.
Implements nonlinear autoregressive (AR) time series models. For univariate series, a non-parametric approach is available through additive nonlinear AR. Parametric modeling and testing for regime switching dynamics is available when the transition is either direct (TAR: threshold AR) or smooth (STAR: smooth transition AR, LSTAR). For multivariate series, one can estimate a range of TVAR or threshold cointegration TVECM models with two or three regimes. Tests can be conducted for TVAR as well as for TVECM (Hansen and Seo 2002 and Seo 2006).
Time series analysis and computational finance.
Routines for the analysis of nonlinear time series. This
work is largely inspired by the TISEAN project, by Rainer
Hegger, Holger Kantz and Thomas Schreiber:
http://www.mpipks-dresden.mpg.de/~tisean/
Implements an Entropy measure of dependence based on the Bhattacharya-Hellinger-Matusita distance. Can be used as a (nonlinear) autocorrelation/crosscorrelation function for continuous and categorical time series. The package includes tests for serial dependence and nonlinearity based on it. Some routines have a parallel version that can be used in a multicore/cluster environment. The package makes use of S4 classes.
Extraction of Factors from Multivariate Time Series. See ?00tsfa-Intro for more details.
A 'fame' interface for 'TSdbi'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
two-stage procedure for comparing hazard rate functions
which may or may not cross each other
Functions for analysing and forecasting intermittent demand/slow moving items time series.
Implementations of a number of functions used to mine numeric time-series data. It covers the implementation of SAX transformation, univariate motif discovery (based on the random projection method), multivariate motif discovery (based on graph clustering), and several functions used for the ease of visualizing the motifs discovered. The details of SAX transformation can be found in J. Lin. E. Keogh, L. Wei, S. Lonardi, Experiencing SAX: A novel symbolic representation of time series, Data Mining and Knowledge Discovery 15 (2) (2007) 107-144. Details on univariate motif discovery method implemented can be found in B. Chiu, E. Keogh, S. Lonardi, Probabilistic discovery of time series motifs, ACM SIGKDD, Washington, DC, USA, 2003, pp. 493-498. Details on the multivariate motif discovery method implemented can be found in A. Vahdatpour, N. Amini, M. Sarrafzadeh, Towards unsupervised activity discovery using multi-dimensional motif detection in time series, IJCAI 2009 21st International Joint Conference on Artificial Intelligence.
Methods to
retrieve data from several different sources. This include historical
quote data from Yahoo and Oanda, economic data from FRED, and xls and
csv data from different sources.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Tools for specifying time series regression models
A 'MySQL' interface for 'TSdbi'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Temporal SNA tools for continuous- and discrete-time longitudinal networks having vertex, edge, and attribute dynamics stored in the 'networkDynamic' format. This work was supported by grant R01HD68395 from the National Institute of Health.
A "pure R" implementation of the t-SNE algorithm.
An ODBC interface for 'TSdbi'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Detection of outliers in time series following the
Chen and Liu (1993) procedure. Innovative outliers, additive outliers,
level shifts, temporary changes and seasonal level shifts are considered.
Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and
an interface to the Concorde TSP solver and its implementation of the
Chained-Lin-Kernighan heuristic. Concorde
itself is not included in the package and has to be obtained separately
from http://www.math.uwaterloo.ca/tsp/concorde.html.
Adjusts for correlations among the rows and columns via
the Transposable Sphering Algorithm when conducting large-scale
inference on the rows of a data matrix.
Prediction intervals for ARIMA and structural time series
models using importance sampling approach with uninformative priors for model
parameters, leading to more accurate coverage probabilities in frequentist
sense. Instead of sampling the future observations and hidden states of the
state space representation of the model, only model parameters are sampled,
and the method is based solving the equations corresponding to the conditional
coverage probability of the prediction intervals. This makes method relatively
fast compared to for example MCMC methods, and standard errors of prediction
limits can also be computed straightforwardly.
Instance feature calculation and evolutionary instance generation
for the traveling salesman problem. Also contains code to "morph" two TSP
instances into each other. And the possibility to conveniently run a couple
of solvers on TSP instances.
A 'PostgreSQL' interface for 'TSdbi'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Functions for time series prediction and accuracy assessment using automatic ARIMA modelling. The generated ARIMA models and its yielded prediction errors are intended to be used as baseline for evaluating the practical value of other time series prediction methods and creating a demand for the refinement of such methods. For this purpose, benchmark data from prediction competitions may be used.
Methods to
retrieve data in the Statistical Data and Metadata Exchange ('SDMX') format
from several database. (For example,
EuroStat, the European Central Bank, the Organisation for Economic
Co-operation and Development, the Unesco Institute for Statistics,
and the International Labor Organization.)
This is a wrapper for package 'RJSDMX'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
Standard SQL query functions used by
SQL plugins packages for the 'TSdbi' interface to time series databases.
It will mainly be used by other packages rather than directly by end
users. The one exception is the function 'TSquery' which can be used to
construct a time series from a database containing observations over
time (e.g. balance statements for multiple years), but where the database
is not specifically designed to store time series (as with other
'TSdbi' SQL plugin packages).
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
An 'SQLite' interface for 'TSdbi'.
Comprehensive examples of all the 'TS*' packages is provided in the
vignette Guide.pdf with the 'TSdata' package.
A ternary search tree is a type of prefix tree with up to three children and the ability for incremental string search. The package uses this ability for word auto-completion and spell checking. Includes a dataset with the 10001 most frequent English words.
Interactive laboratory of Time Series based in Box-Jenkins methodology.
This interface was created to develop a standard procedure
to analyse temporal trend in the framework of the OSPAR convention.
The analysis process run through 4 successive steps : 1) manipulate your data, 2)
select the parameters you want to analyse, 3) build your regulated
time series, 4) perform diagnosis and analysis and 5) read the results.
Statistical analysis call other package function such as Kendall tests
or cusum() function.
C source code and R wrappers for the tth/ttm TeX to
HTML/MathML translators.
Computing the first two moments of the truncated multivariate t (TMVT) distribution under the double truncation. Appling the slice sampling algorithm to generate random variates from the TMVT distribution.
Functions and data to construct technical trading rules with R.
Time-Temperature Superposition analysis is often applied to frequency modulated data obtained by Dynamic
Mechanic Analysis (DMA) and Rheometry in the analytical chemistry and physics
areas. These techniques provide estimates of material mechanical properties
(such as moduli) at different temperatures in a wider range of time. This
package provides the Time-Temperature superposition Master Curve at a referred
temperature by the three methods: the two wider used methods, Arrhenius based
methods and WLF, and the newer methodology based on derivatives procedure.
The Master Curve is smoothed by B-splines basis. The package output is composed
of plots of experimental data, horizontal and vertical shifts, TTS data, and TTS
data fitted using B-splines with bootstrap confidence intervals.
This package utilizes training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.
Implementation of Time to Target plot based on the work
of Ribeiro and Rosseti (2015) <DOI:10.1007/s11590-014-0760-8>,
that describe a numerical method that gives the probability of
an algorithm A finds a solution at least as good as a given
target value in smaller computation time than algorithm B.
This package makes Travel To Work Area from a commuting flow data frame.
Get comments posted on YouTube videos, information on how many
times a video has been liked, search for videos with particular content, and
much more. You can also scrape captions from a few videos. To learn more about
the YouTube API, see https://developers.google.com/youtube/v3/.
Provides R Markdown output formats to use Tufte styles for PDF and HTML output.
Custom template and output formats for use with rmarkdown. Produce
Edward Tufte-style handouts in html formats with full support for rmarkdown
features
Perform the conventional Tukey test from aov and aovlist
objects
Provides an R-interface to the Tumblr web API (see Tumblr v2 API on https://www.tumblr.com/docs/en/api/v2). Tumblr is a microblogging platform and social networking website (https://www.tumblr.com).
A tool to obtain tumor growth rates from clinical trial patient data.  Output includes individual and summary data for tumor growth rate estimates as well as optional plots of the observed and predicted tumor quantity over time.
Generic methods for parameter tuning of classification algorithms using multiple scoring functions
Collection of tools to analyze music, extract features
like MFCCs, handling wave files, read mp3, transcription, ...
Also contains functions ported from the rastamat Matlab
package.
Functions to find all matches or non-matches, orphans, and
duplicate or other replicated elements.
Algorithms for accelerating the convergence of slow,
monotone sequences from smooth, contraction mapping such as the
EM and MM algorithms. It can be used to accelerate any smooth,
linearly convergent acceleration scheme.  A tutorial style
introduction to this package is available in a vignette on the
CRAN download page or, when the package is loaded in an R
session, with vignette("turboEM").
Package for analyzing TURF (Total Unduplicated Reach and Frequency) data in R.
No looping in TURF algorithm results in fast processing times. Allows for individual-level
weights, depth specification, and user-truncated combination set(s). Allows user to substitute
Monte Carlo simulated combination set(s) after set(s) exceed a user-specified limit.
Package designed for working with vectors and lists of vectors,
mainly for turning them into other indexed data structures.
An implementation of turtle graphics
(http://en.wikipedia.org/wiki/Turtle_graphics) in R.
Turtle graphics comes from Papert's language Logo and has
been used to teach concepts of computer programming.
DataCamp Light (<https://github.com/datacamp/datacamp-light>) is a light-weight implementation of the DataCamp UI,
that allows you to embed interactive exercises inside HTML documents. The 'tutorial' package makes it easy to create these
HTML files from R Markdown files. A wrapper around the 'rmarkdown' package, 'tutorial' pre-detects code chunks with the 'ex' and 'type'
properties, and replaces the chunks with DataCamp Light readable chunks in the resulting HTML file.
The model, developed at the Vienna University of Technology, is a lumped conceptual rainfall-runoff model, following the structure of the HBV model.
The model runs on a daily or shorter time step and consists of a snow routine, a soil moisture routine and a flow routing routine.
See Parajka, J., R. Merz, G. Bloeschl (2007) Uncertainty and multiple objective calibration in regional water balance modelling: case study in 320 Austrian catchments, Hydrological Processes, 21, 435-446.
Total Variation Denoising is a regularized denoising method which
effectively removes noise from piecewise constant signals whilst preserving
edges.  This package contains a C++ implementation of Condat's very fast 1D
squared error loss TVD algorithm.  Additional methods and loss functions may
be added in future versions.
Functions for managing cashflows and interest rate curves.
This package offers functions for propensity score
estimating and weighting, nonresponse weighting, and diagnosis
of the weights.  This package was originally developed by Drs.
Ridgeway, McCaffrey, and Morral. Burgette, Griffin and
McCaffrey updated the package during 2011-2015.
Maximum likelihood computations for Tweedie families.
In order to create smooth animation between states of data,
tweening is necessary. This package provides a range of functions for
creating tweened data that plugs right into functions such as gg_animate()
from the 'gganimate' package. Furthermore it adds a number of vectorized
interpolaters for common R data types such as numeric, date and colour.
This is an improved implementation of the package 'StreamR' to capture tweets and store it into a SQLite and 'postGIS' data base. The package simplifies the configuration task to capture tweets and facilitates its store into a 'PostGIS' database. Also exports tweets to 'GIS' format.
Twiddler is an interactive tool that automatically creates
a Tcl/Tk GUI for manipulating variables in any R expression.
See the documentation of the function twiddle to get started.
Provides an interface to the Twitter web API.
This package implements the nonparametric test of equality
between two copulas proposed by Remillard and Scaillet in their
2009 JMVA paper.
Estimation of gene-treatment interactions in randomized clinical trials exploiting gene-treatment independence.
This program computes thresholds and power for a two-stage
genome-wide association study. It follows the methods described
in Skol AD, Scott, LJ, Abecasis GR, Boehnke M (2006) Nature
Genetics doi:10.1038/ng1706 and in the "CaTS" computer program
(http://www.sph.umich.edu/csg/abecasis/CaTS/)
Implements a variety of non-parametric methods for computing one-stage and two-stage confidence intervals, as well as point estimates of threshold values.
Conditional logistic regression with longitudinal follow up and
individual-level random coefficients: A stable and efficient
two-step estimation method.
Provides functions to produce rudimentary ascii graphics
directly in the terminal window. Provides a basic plotting
function (and equivalents of curve, density, acf and barplot)
as well as a boxplot function.
Two Phase I designs are implemented in the package: the classical 3+3 and the Continual Reassessment Method. Simulations tools are also available to estimate the operating characteristics of the methods with several user-dependent options.
This package contains latex, knitr and R Markdown templates that
adhere to the UC Berkeley Graduate Division's thesis guidelines. The
templates are located in the inst/ directory.
An algorithm for general-purpose unconstrained non-linear optimization.
The algorithm is of quasi-Newton type with BFGS updating of the inverse
Hessian and soft line search with a trust region type monitoring of the
input to the line search algorithm. The interface of 'ucminf' is
designed for easy interchange with 'optim'.
Provides simple bindings to version 2 of Unidata's udunits library.
Allows users to access live UK gas market information via National Grid's API.
A generic reference Bayesian analysis of unidimensional mixtures of Gaussian distributions obtained by a location-scale parameterisation of the model is implemented. Included functions can be applied to produce a Bayesian analysis of Gaussian mixtures with an arbitrary number of components, with no need to define the prior distribution.
Does uniformly most powerful (UMP) and uniformly most
powerful unbiased (UMPU) tests.  At present only distribution implemented
is binomial distribution.  Also does fuzzy tests and confidence intervals
(following Geyer and Meeden, Statistical Science, 2005) for the binomial
distribution (one-tailed procedures based on UMP test and two-tailed
procedures based on UMPU test).
Create, run, and report structural equation and twin models quickly.
If you're just starting out, try typing '?umx'.
A dataset is said to be unbalanced when the class of interest (minority class) is much rarer than normal behaviour (majority class). The cost of missing a minority class is typically much higher that missing a majority class. Most learning systems are not prepared to cope with unbalanced data and several techniques have been proposed. This package implements some of most well-known techniques and propose a racing algorithm to select adaptively the most appropriate strategy for a given unbalanced task.
The package implements top-down and bottom-up algorithms
for nonparametric function estimation in Gaussian noise using
Unbalanced Haar wavelets.
Provides a basic (random) data, grids, 6 models of uncertainty, 3 automatic interpolations (idw, spline, kriging), variogram and basic data visualization.
Computes a universal numeric fingerprint (UNF) for an R data object. UNF is a cryptographic hash or signature that can be used to uniquely identify (a version of) a rectangular dataset, or a subset thereof. UNF can be used, in tandem with a DOI, to form a persistent citation to a versioned dataset.
Stereological unfolding as implemented in this package consists in
the estimation of the joint size-shape-orientation distribution of spheroidal shaped
particles based on the same measured quantities of corresponding planar section
profiles. A single trivariate discretized version of the (stereological) integral
equation in the case of prolate and oblate spheroids is solved numerically by the
EM algorithm. The estimation of diameter distribution of spheres from planar sections
(Wicksell's corpuscle problem) is also implemented. Further, the package provides routines
for the simulation of a Poisson germ-grain process with either spheroids or spheres as grains
together with functions for planar sections.
Nonparametric estimation of a unimodal or U-shape covariate effect under additive hazards model.
Data from Unicode 8.0.0 and related utilities.
Univarate shrinkage prediction for survival analysis using
in the Cox model.. Especially useful for high-dimensional data,
including microarray data.
Goodness-of-fit tests for the uniform distribution.
For each string in a set of strings, determine a unique tag that is a substring of fixed size k unique to that string, if it has one. If no such unique substring exists, the least frequent substring is used. If multiple unique substrings exist, the lexicographically smallest substring is used. This lexicographically smallest substring of size k is called the "UniqTag" of that string.
An alternative implementation and extension (grpDuplicated) of base::duplicated.matrix, base:anyDuplicated.matrix and base::unique.matrix for matrices of atomic mode, avoiding the time consuming collapse of the matrix into a character vector.
Univariate spline regression. It is possible to add the shape constraint of unimodality and predefined or
self-defined penalties on the B-spline coefficients.
United is a software tool which can be downloaded at the following
website <http://www.schroepl.net/pbm/software/united/>. In general, it is
a virtual manager game for football teams. This package contains helpful
functions for determining an optimal formation for a virtual match in
United. E.g. knowing that the opponent has a strong defensive it is
advisable to beat him in the midfield. Furthermore, this package contains
functions for computing the optimal usage of hardness in a game.
Concise TAP (http://testanything.org/) compliant unit testing package. Authored tests can be run using CMD check with minimal implementation overhead.
Fits hierarchical models of animal abundance and occurrence to data collected using survey methods such as point counts, site occupancy sampling, distance sampling, removal sampling, and double observer sampling. Parameters governing the state and observation processes can be modeled as functions of covariates.
A collection of utilities for biodiversity data.
Includes the simulation of ecological drift under Hubbell's Unified
Neutral Theory of Biodiversity, and the calculation of various
diagnostics such as Preston curves.  Now includes functionality
provided by Francois Munoz and Andrea Manica.
This package contains a collection of functions which
implement data classification. It uses unlabeled data to obtain
parameter estimates of models. The functions can be implemented
over a number of models with the best model selected and
displayed.
An integrated package for building and testing uplift models
An implementation of the UPMASK method for performing membership
assignment in stellar clusters in R. It is prepared to use photometry and
spatial positions, but it can take into account other types of data. The
method is able to take into account arbitrary error models, and it is
unsupervised, data-driven, physical-model-free and relies on as few
assumptions as possible. The approach followed for membership assessment is
based on an iterative process, principal component analysis, a clustering
algorithm and a kernel density estimation.
Creates visualizations of intersecting sets using a novel matrix
design, along with visualizations of several common set, element and attribute
related tasks.
Provide a set of wrappers to call all the endpoints of UptimeRobot API
which includes various kind of ping, keep-alive and speed tests.
See <https://uptimerobot.com/> for more information.
Unit root and cointegration tests encountered in applied
econometric analysis are implemented.
Allows using different URL shortening services, which also provide
expanding and analytic functions. Specifically developed for 'Bit.ly', 'Goo.gl'
(both OAuth2) and 'is.gd' (no API key). Others can be added by request.
A toolkit for handling URLs that so far includes functions for URL
encoding and decoding, parsing, and parameter extraction. All functions are
designed to be both fast and entirely vectorised. It is intended to be
useful for people dealing with web-related datasets, such as server-side
logs, although may be useful for other situations involving large sets of
URLs.
Seasonal unit roots and seasonal stability tests.
P-values based on response surface regressions are available for both tests.
P-values based on bootstrap are available for seasonal unit root tests.
A parallel implementation of the bootstrap method requires a CUDA capable GPU
with compute capability >= 3.0, otherwise a debugging version fully coded in R is used.
The boundaries for geographical units in the United States of
America contained in this package include state, county, congressional
district, and zip code tabulation area. Contemporary boundaries are provided
by the U.S. Census Bureau (public domain). Historical boundaries for the
years from 1629 to 2000 are provided form the Newberry Library's 'Atlas of
Historical County Boundaries' (licensed CC BY-NC-SA). Additional high
resolution data is provided in the 'USAboundariesData' package;
this package provides an interface to access that data.
This package contains functions to read cancer data from SEER (http://seer.cancer.gov/) and IARC (http://www.iarc.fr) to create datasets at the county level based on US census information.
US Census 2000 Designated Places shapefiles and additional
demographic data from the SF1 100 percent files. This data set
contains polygon files in lat/lon coordinates and the
corresponding demographic data for a number of different
variables.
US 2000 Census Tract shapefiles and additional demographic
data from the SF1 100 percent files. This data set contains
polygon files in lat/lon coordinates and the corresponding
demographic data for a number of different variables.
US Census 2010 shape files and additional demographic data
from the SF1 100 percent files. This package contains a number
of helper functions for the UScensus2010blk,
UScensus2010blkgrp, UScensus2010tract, UScensus2010cdp
packages.
This is a framework that aims to provide methods and tools for assessing the impact of different sources of uncertainties (e.g.positional uncertainty) on performance of species distribution models (SDMs).)
A set of little functions that have been found useful to do little
odds and ends such as plotting the results of K-means clustering, substituting
special text characters, viewing parts of a data.frame, constructing formulas
from text and building design and response matrices.
Contains a number of functions that serve
two goals: first, make R more accessible to people migrating from
SPSS by adding a number of functions that behave roughly like their
SPSS equivalents; and second, make a number of slightly more
advanced functions more user friendly to relatively novice users.
A collection of data sets to accompany the
textbook "Using R for Introductory Statistics," second
edition.
Implements mixtures of unrestricted skew-t factor analyzer models via the EM algorithm
The Universal Scalability Law is a model to predict hardware and
software scalability. It uses system capacity as a function of load to
forecast the scalability for the system.
Forms a query to submit for US Treasury yield curve data, posting
this query to the US Treasury web site's data feed service.  By default the
download includes data yield data for 12 products from January 1, 1990,
some of which are NA during this span.  The caller can pass parameters to
limit the query to a certain year or year and month, but the full download
is not especially large.  The download data from the service is in XML
format.  The package's main function transforms that XML data into a numeric
data frame with treasury product items (constant maturity yields for 12 kinds
of bills, notes, and bonds) as columns and dates as row names. The function
returns a list which includes an item for this data frame as well as query-related
values for reference and the update date from the service.
Construct and plot objective hierarchies and associated value and utility functions.
Evaluate the values and utilities and visualize the results as colored objective hierarchies or tables.
Visualize uncertainty by plotting median and quantile intervals within the nodes of objective hierarchies.
Get numerical results of the evaluations in standard R data types for further processing.
Multi-label learning methods and others utilities to support multi-
label classification in R.
Tools for generating and handling of UUIDs (Universally Unique Identifiers).
A method for estimating log-normalizing constants (or free
energies) and expectations from multiple distributions (such as
multiple generalized ensembles).
An R interface to Google's open source JavaScript engine.
V8 is written in C++ and implements ECMAScript as specified in ECMA-262,
5th edition. In addition, this package implements typed arrays as
specified in ECMA 6 used for high-performance computing and libraries
compiled with 'emscripten'.
A likelihood framework for estimating the effective
coverage of vaccination programs using cross-sectional surveys
combined with administrative data.
Declare data validation rules and data quality indicators; confront
data with them and analyze or visualize the results. The package supports
rules that are per-field, in-record, cross-record or cross-dataset. Rules
can be automatically analyzed for rule type and connectivity.
An implementation of statistical tests for the validation of rating systems as described in the ECB Working paper ''Advances in multivariate back-testing for credit risk underestimation'', by F. Coppens, M. Mayer, L. Millischer, F.  Resch, S. Sauer, K. Schulze (ECB WP series, forthcoming).
Historical results for the state of Virginia lottery draw games. Data were downloaded from https://www.valottery.com/.
Implements the variational inference procedure for
Bayesian variable selection, as described in the "Scalable
variational inference for Bayesian variable selection in
regression, and its accuracy in genetic association studies"
(Bayesian Analysis 7, March 2012, pages 73-108). This software
has been used to implement Bayesian variable selection for
large problems with over a million variables and thousands of
samples.
Variance component models: REML estimation, testing fixed effect contrasts through Satterthwaite or Kenward-Roger methods, testing the nullity of variance components through (linear or quadratic) score tests or likelihood ratio tests.
Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile,  relative median income ratio,  at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Computes Value at risk and expected shortfall, two most popular measures of financial risk, for over one hundred parametric distributions,  including all commonly known distributions.  Also computed are the corresponding probability density function and cumulative distribution function.
Estimation, Hypothesis Testing, Prediction for Stationary Vector Autoregressive Models
Captures and compiles the genes and variants related to a disease, a phenotype or a clinical feature based on the public databases including HPO (Human Phenotype Ontology, http://human-phenotype-ontology.github.io/about.html), Orphanet (http://www.orpha.net/consor/cgi-bin/index.php), OMIM (Online Mendelian Inheritance in Man, http://www.omim.org), ClinVar (http://www.ncbi.nlm.nih.gov/clinvar), and Uniprot (Universal Protein Resource, http://www.uniprot.org) and Pubmed. HPO provides a standardized vocabulary of phenotypic abnormalities encountered in human disease. HPO currently contains approximately 11,000 terms and over 115,000 annotations to hereditary diseases. Orphanet is the reference portal for information on rare diseases and orphan drugs, whose aim is to help improve the diagnosis, care and treatment of patients with rare diseases. OMIM is a continuously updated catalog of human genes and genetic disorders and traits, with particular focus on the molecular relationship between genetic variation and phenotypic expression. ClinVar is a freely accessible, public archive of reports of the relationships among human variations and phenotypes, with supporting evidence. Uniprot focuses on amino acid altering variants imported from Ensembl Variation databases. For Homo sapiens, the variants including human polymorphisms and disease mutations in the Uniprot are manually curated  from UniProtKB/Swiss-Prot.
Variables are the fundamental parts of each programming language but handling them might be frustrating for programmers from time to time. This package contains some functions to help user (especially data explorers) to make more sense of their variables and take the most out of variables as well as their hardware. These functions are written, collected and crafted over some years of experience in statistical data analysis and for each of them there was a need. Functions in this package are suppose to be efficient and easy to use, hence they will be frequently updated to make them more convenient.
Presence of interaction between a SNP and another SNP (or another factor) can result
in heterogeneity of variance between the genotypes of an interacting SNP.
Detecting such heterogeneity gives prior knowledge for constructing a genetic model
underlying complex trait.
Abstract descriptions of (yet) unobserved variables.
Uses a Bayesian model to
estimate the variability in a repeated
measure outcome and use that as an outcome or a predictor
in a second stage model.
This package provides functions for the variance gamma
distributions. Density, distribution and quantile functions.
Functions for random number generation and fitting of the
variance gamma to data. Also, functions for computing moments
of the variance gamma distribution of any order about any
location. In addition, there are functions for checking the
validity of parameters and to interchange different sets of
parameterizatons for the variance gamma distribution.
Estimation, lag selection, diagnostic testing, forecasting, causality analysis, forecast error variance decomposition and impulse response functions of VAR models and estimation of SVAR and SVEC models.
An algorithm which identifies the morphometric features that significantly discriminate two taxa and validates the morphological distinctness between them via a Monte-Carlo test, polar coordinates and overlap of the area under the density curve.
Uses a finite mixture model for performing the cluster analysis with variable selection of continuous data by assuming independence between classes. The package deals dataset with missing values by assuming that values are missing at random. The one-dimensional marginals of the components follow Gaussian distributions for facilitating both model interpretation and model selection. The variable selection is led by the Maximum Integrated Complete-Data Likelihood criterion. The maximum likelihood inference is done by an EM algorithm for the selected model. This package also performs the imputation of  missing values.
Variable selection from random forests using both
backwards variable elimination (for the selection of small sets
of non-redundant variables) and selection based on the
importance spectrum (somewhat similar to scree plots; for the
selection of large, potentially highly-correlated variables).
Main applications in high-dimensional data (e.g., microarray
data, and other genomics and proteomics applications).
Provides routines for identifying structural shocks in vector autoregressions (VARs) using sign restrictions.
Computes a portfolio of European options that replicates
the cost of capturing the realised variance of an equity index.
Generates R scripts useful to perform repetitive
tasks on variables of different classes from a simple database. First it
helps to create a tabular file describing the variables. Then the package
could process this tabulate file to create a script in a .R or .Rmd format.
This script will include code blocks for each variable according to the
variable description. It could help to import, adapt to R classes and
perform descriptive analysis on each variable according to its type. This R
script could be used as it is or it could be modified if necessary to
perform additional analysis. The user could write his own R script template
to produce a customized script.
Efficient algorithm for solving discrete mixture
regression model for rare variant association analysis.
Uses variational Bayes algorithm to efficiently search over
model space.  Outputs an approximate likelihood ratio test
as well as variant level posterior probabilities of
association.
Fit and simulate latent position and cluster
models for network data, using a fast Variational Bayes approximation.
Variational algorithms and methods for fitting mixture
models. Main functions are varbayes, vbcomp, vbconstr, mppca,
mmppca and gmmkmsock.
Efficient algorithm for solving ultra-sparse
regularized regression models using a variational
Bayes algorithm with a spike (l0) prior.  Algorithm
is solved on a path, with coordinate updates, and is
capable of generating very sparse models.  There are
very general model diagnostics for controling type-1
error included in this package.
ANOVA and REML estimation of linear mixed models is implemented, once following
Searle et al. (1991, ANOVA for unbalanced data), once making use of the 'lme4' package.
The primary objective of this package is to a perform variance component analysis (VCA)
according to CLSI EP05-A3 guideline "Evaluation of Precision of Quantitative Measurement
Procedures" (2014). There are plotting methods for visualization of an experimental design,
plotting random effects and residuals. For ANOVA type estimation two methods for computing
ANOVA mean squares are implemented (SWEEP and quadratic forms). The covariance matrix of
variance components can be derived, which is used in estimating confidence intervals. Linear
hypotheses of fixed effects and LS means can be computed. LS means can be computed at specific
values of covariables and with custom weighting schemes for factor variables. See ?VCA for a
more comprehensive description of the features.
Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was package was originally inspired by the book
"Visualizing Categorical Data" by Michael Friendly and is
now the main support package for a new book,
"Discrete Data Analysis with R" by Michael Friendly and
David Meyer (2015).
Provides additional data sets, methods and documentation to complement the 'vcd' package for Visualizing Categorical Data
and the 'gnm' package for Generalized Nonlinear Models.
In particular, 'vcdExtra' extends mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models and
adds a 3D version in 'mosaic3d'.  Additionally, methods are provided for comparing and visualizing lists of
'glm' and 'loglm' objects. This package is now a support package for the book, "Discrete Data Analysis with R" by
Michael Friendly and David Meyer.
Tools for working with variant call format ('VCF') files. Reads in 'VCF', 'GFF' and 'FASTA' data for visualization.  Includes tools for filtering and writing to 'VCF' files.
Recursive partitioning for varying coefficient generalized linear models and ordinal linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal regression.
Multicategory Vertex Discriminant Analysis: A novel supervised multicategory classification method
Facilities for constructing variance dispersion graphs, fraction-
of-design-space plots and similar graphics for exploring the properties of
experimental designs. The design region is explored via random sampling, which
allows for more flexibility than traditional variance dispersion graphs. A
formula interface is leveraged to provide access to complex model formulae.
Graphics can be constructed simultaneously for multiple experimental designs
and/or multiple model formulae. Instead of using pointwise optimization to
find the minimum and maximum scaled prediction variance curves, which can be
inaccurate and time consuming, this package uses quantile regression as an
alternative.
Uses a modification of the published FORTRAN code in "A Computer Program for Generating Variance Dispersion Graphs" by G. Vining, Journal of Quality Technology, Vol. 25 No. 1 January 1993, to produce variance dispersion graphs. Also produces fraction of design space plots, and contains data frames for several minimal run response surface designs.
Functions for creating variance dispersion graphs, fraction of design space plots, and contour plots of scaled prediction variances for second-order response surface designs in spherical and cuboidal regions. Also, some standard response surface designs can be generated.
This provides web-based visual data-mining tools by adding
interactive functions to 'ggplot2' graphics. Brushing and linking between the
multiple plots is one of the main feature of this package. Currently scatter
plots, histograms, parallel coordinate plots and choropleth maps are supported.
A package for applying affine and similarity transformations on vector spatial data (sp objects). Transformations can be defined from control points or directly from parameters. If redundant control points are provided Least Squares is applied allowing to obtain residuals and RMSE.
The base 'sets' tools follow the algebraic definition
that each element of a set must be unique.
Since it's often helpful to compare all elements of two vectors,
this toolset treats every element as unique for counting purposes.
For ease of use, all functions in vecsets have an argument
'multiple' which, when set to FALSE,
reverts them to the base::set tools functionality.
This package performs a 2D statistical analysis, both numerical and graphical, of a set of vectors. Since a vector has two components (module and azimuth) vector analysis is performed in three stages: modules are analyzed by means of linear statistics, azimuths are analyzed by circular statistics, and the joint analysis of modules and azimuths is done using density maps that allow detecting another distribution properties (i.e. anisotropy) and outliers. Tests and circular statistic parameters have associated a full range of graphing: histograms, maps of distributions, point maps, vector maps, density maps, distribution modules and azimuths.
This package performs a 3D statistical analysis, both numerical and graphical, of a set of vectors. Since a vector has three components (a module and two angles) vectorial analysis is performed in two stages: modules are analyzed by means of linear statistics and orientations are analyzed by spherical statistics. Tests and spherical statistic parameters are accompanied by a graphs as: density maps, distribution modules and angles. The tests, spherical statistic parameters and graphs allow us detecting another distribution properties (i.e. anisotropy) and outliers.
The 'Vega-Lite' 'JavaScript' framework provides a higher-level grammar
for visual analysis, akin to 'ggplot' or 'Tableau', that generates complete 'Vega'
specifications. Functions exist which enable building a valid 'spec' from scratch
or importing a previously created 'spec' file. Functions also exist to export 'spec'
files and to generate code which will enable plots to be embedded in properly
configured web pages. The default behavior is to generate an 'htmlwidget'.
Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Static and dynamic 3D plots to be used with ordination
results and in diversity analysis, especially with the vegan package.
This package contains functions used to perform fuzzy clustering of vegetation data under different models.
Handling of vegetation data from Turboveg (<http://www.synbiosys.alterra.nl/turboveg/>) and other sources (<http://www.vegetweb.de>). Taxonomic harmonization given appropriate taxonomic lists (e.g. the German taxonomical standard list "GermanSL", <http://www.botanik.uni-greifswald.de/GermanSL.html>).
This package computes diversity for community data sets
using the methods outlined by Jost (2006, 2007). While there
are differing opinions on the ideal way to calculate diversity
(e.g. Magurran 2004), this method offers the advantage of
providing diversity numbers equivalents, independent alpha and
beta diversities, and the ability to incorporate 'order' (q) as
a continuous measure of the importance of rare species in the
metrics. The functions provided in this package largely
correspond with the equations offered by Jost in the cited
papers. The package computes alpha diversities, beta
diversities, gamma diversities, and similarity indices.
Confidence intervals for diversity measures are calculated
using a bootstrap method described by Chao et al. (2008).  For
datasets with many samples (sites, plots), sim.table creates
tables of all pairwise comparisons possible, and for grouped
samples sim.groups calculates pairwise combinations of within-
and between-group comparisons.
Draws and displays Venn diagrams up to 7 sets, and any boolean union of set intersections.
A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Calculates and displays Venn and Euler Diagrams
Utilities for verifying discrete, continuous and probabilistic forecasts, and forecasts expressed as parametric distributions are included.
Installs specified versions of R packages hosted on CRAN and
provides functions to list available versions and the versions of currently
installed packages. These tools can be used to help make R projects and
packages more reproducible. 'versions' fits in the narrow gap between
the 'devtools' install_version() function and the 'checkpoint' package.
devtools::install_version() installs a stated package version from source files
stored on the CRAN archives. However CRAN does not store binary versions of
packages so Windows users need to have RTools installed and Windows and OSX
users get longer installation times. 'checkpoint' uses the Revolution Analytics
MRAN server to install packages (from source or binary) as they were available
on a given date. It also provides a helpful interface to detect the packages
in use in a directory and install all of those packages for a given date.
'checkpoint' doesn't provide install.packages-like functionality however, and
that's what 'versions' aims to do, by querying MRAN. As MRAN only goes back to
2014-09-17, 'versions' can't install packages from before this date.
When given a description of a polyhedral set by a system of linear inequalities Ax <= b, produce the list of the vertices of the set.
Creates Vertex Similarity matrix of an undirected graph based
on the method stated by E. A. Leicht, Petter Holme, AND M. E. J. Newman in
their paper <DOI:10.1103/PhysRevE.73.026120>.
Integrated data management library that offers a variety of tools concerning the loading and manipulation of environmental data available from different Venezuelan governmental sources. Facilities are provided to plot temporal and spatial data as well as understand the health of a collection of meteorological data.
An implementation of about 6 major classes of
statistical regression models. At the heart of it are the
vector generalized linear and additive model (VGLM/VGAM)
classes, and the book "Vector Generalized Linear and
Additive Models: With an Implementation in R" (Yee, 2015)
gives details of the statistical framework and VGAM package.
Currently only fixed-effects models are implemented,
i.e., no random-effects models. Many (150+) models and
distributions are estimated by maximum likelihood estimation
(MLE) or penalized MLE, using Fisher scoring. VGLMs can be
loosely thought of as multivariate GLMs. VGAMs are data-driven
VGLMs (i.e., with smoothing). The other classes are RR-VGLMs
(reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs,
RCIMs (row-column interaction models)---these classes perform
constrained and unconstrained quadratic ordination (CQO/UQO)
models in ecology, as well as constrained additive ordination
(CAO). Note that these functions are subject to change;
see the NEWS and ChangeLog files for latest changes.
Data sets to accompany the VGAM package and
the book "Vector Generalized Linear and
Additive Models: With an Implementation in R" (Yee, 2015).
These are used to illustrate vector generalized
linear and additive models (VGLMs/VGAMs), and associated models
(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Row-Column
Interaction Models, and constrained and unconstrained ordination
models in ecology).
This package provides an implementation of Linear discriminant analysis and quadratic discriminant analysis that works fine in very high dimension (when there are many more variables than observations).
The "Vertical and Horizontal Inheritance Consistence Analysis" method is described in the following publication: "VHICA: a new method to discriminate between vertical and horizontal transposon transfer: application to the mariner family within Drosophila" by G. Wallau. et al. (2016) <DOI:10.1093/molbev/msv341>. The purpose of the method is to detect horizontal transfers of transposable elements, by contrasting the divergence of transposable element sequences with that of regular genes.
It will take the vectors of motion for two videos
(coming from a variant of shotdetect code allowing to store
detailed motion vectors in JSON format, for instance) and it
will look for comparing taking out the common chunk.
Then, provided you have some image's hashes it will compare
their signature in order to make up the decision about
chunk similarity of two video files.
ShotDetect is a free software which detects shots and scenes
from a video (http://johmathe.name/shotdetect.html).
This package implements a fast regression algorithm for
building linear model for large data as defined in the paper
"VIF-Regression: A Fast Regression Algorithm for Large Data
(2011), Journal of the American Statistical Association, Vol.
106, No. 493: 232-247" by Dongyu Lin, Dean P. Foster, and Lyle
H. Ungar.
Contains a function to support the paper 'A sequential multiple change-point detection
procedure via VIF regression' (Accepted by Computational Statistics).
Conducts linear regression using variational Bayesian inference, particularly optimized for genome-wide association mapping and whole-genome prediction which use a number of DNA markers as the explanatory variables. Provides seven regression models which select the important variables (i.e., the variables related to response variables) among the given explanatory variables in different ways (i.e., model structures).
New tools for the visualization of missing
and/or imputed values are introduced, which can be used for exploring the data and the
structure of the missing and/or imputed values. Depending on this structure
of the missing values, the corresponding methods may help to identify the
mechanism generating the missing values and allows to explore the data
including missing values. In addition, the quality of imputation can be
visually explored using various univariate, bivariate, multiple and
multivariate plot methods. A graphical user interface available in the
separate package VIMGUI allows an easy handling of the implemented plot
methods.
This package introduces new tools for the visualization of missing
and/or imputed values, which can be used for exploring the data and the
structure of the missing and/or imputed values. Depending on this structure
of the missing values, the corresponding methods may help to identify the
mechanism generating the missings and allows to explore the data including
missing values. In addition, the quality of imputation can be visually
explored using various univariate, bivariate, multiple and multivariate
plot methods. A graphical user interface allows an easy handling of the
implemented plot methods.
Tools for bivariate exploratory data analysis, bivariate copula selection and (vine) tree construction are provided. Vine copula models can be estimated either sequentially or by joint maximum likelihood estimation. Sampling algorithms and plotting methods are included. Data is assumed to lie in the unit hypercube (so-called copula data). For C- and D-vines links to the package 'CDVine' are provided.
Implementation of the vine graphical model for building
high-dimensional probability distributions as a factorization of
bivariate copulas and marginal density functions. This package
provides S4 classes for vines (C-vines and D-vines) and methods
for inference, goodness-of-fit tests, density/distribution
function evaluation, and simulation.
A lattice violin-plot is overlayed with the arithmetic
mean and standard deviation.
A violin plot is a combination of a box plot and a kernel density plot.
viopoints draws one dimensional scatter plots with jitter
using kernel density estimates in a similar way to violin
plots.
Generate a violin point plot, a combination of a violin/histogram plot and a scatter plot by offsetting points within a category based on their density using quasirandom noise.
Port of the new 'matplotlib' color maps ('viridis' - the default
-, 'magma', 'plasma' and 'inferno') to 'R'. 'matplotlib' <http://matplotlib.org/
> is a popular plotting library for 'python'. These color maps are designed
in such a way that they will analytically be perfectly perceptually-uniform,
both in regular form and also when converted to black-and-white. They are
also designed to be perceived by readers with the most common form of color
blindness.
Port of the new 'matplotlib' color maps ('viridis' - the default
-, 'magma', 'plasma' and 'inferno') to 'R'. 'matplotlib' <http://matplotlib.org/
> is a popular plotting library for 'python'. These color maps are designed
in such a way that they will analytically be perfectly perceptually-uniform,
both in regular form and also when converted to black-and-white. They are
also designed to be perceived by readers with the most common form of color
blindness. This is the 'lite' version of the more complete 'viridis' package
that can be found at <https://cran.r-project.org/package=viridis>.
Provides a framework for generating virtual species distributions,
a procedure increasingly used in ecology to improve species distribution models.
This package integrates the existing methodological approaches with the
objective of generating virtual species distributions with increased
ecological realism.
A graphical tool designed to visualize and to give an overview of behavioural observations realized on individuals or groups. ViSiElse allows visualization of raw data during experimental observations of the realization of a procedure. It graphically presents an overview of individuals and group actions usually acquired from timestamps during video recorded sessions. Options of the package allow adding graphical information as statistical indicators (mean, standard deviation, quantile or statistical test) but also for each action green or black zones providing visual information about the accuracy of the realized actions.
Provides an R interface to the 'vis.js' JavaScript charting library. It allows an interactive visualization of networks.
Provides a convenient interface for constructing plots to visualize the fit of regression models arising from a wide variety of models in R (lm, glm, coxph, rlm, gam, locfit, randomForest, etc.)
A collection of tools for analyzing the field of vision. It provides a framework for development and use of innovative methods for visualization, statistical analysis, and clinical interpretation of visual-field loss and its change over time. It is intended to be a tool for collaborative research.
Graphs the pdf or pmf and highlights what area or probability is present in user defined locations. Visualize is able to provide lower tail, bounded, upper tail, and two tail calculations. Supports strict and equal to inequalities.  Also provided on the graph is the mean and variance of the distribution.
Displays multivariate data, based on Sammon's nonlinear mapping.
Implements the novel testing approach by Janitza et al.(2015)
<http://nbn-resolving.de/urn/resolver.pl?urn=nbn:de:bvb:19-epub-25587-4>
for the permutation variable importance measure in a random forest and the
PIMP-algorithm by Altmann et al.(2010) <doi:10.1093/bioinformatics/btq134>.
Janitza et al.(2015) <http://nbn-resolving.de/urn/resolver.pl?urn=nbn:de:bvb:19-epub-25587-4>
do not use the "standard" permutation variable
importance but the cross-validated permutation variable
importance for the novel test approach. The cross-validated
permutation variable importance is not based on the out-of-bag
observations but uses a similar strategy which is inspired by
the cross-validation procedure. The novel test approach can be
applied for classification trees as well as for regression
trees. However, the use of the novel testing approach has not
been tested for regression trees so far, so this routine is
meant for the expert user only and its current state is rather
experimental.
Provides fitting routines for four versions of the
Vitality family of mortality models.
Provides individual- and aggregate-level graphical depictions of
patterns of treatment and response in patient registries, and a graphical
tool for examining potential for confounding in analyses of observational
data.
Using frequency matrices, very low frequency variants (VLFs) are assessed for amino acid and nucleotide sequences.  The VLFs are then compared to see if they occur in only one member of a species, singleton VLFs, or if they occur in multiple members of a species, shared VLFs.  The amino acid and nucleotide VLFs are then compared to see if they are concordant with one another.  Amino acid VLFs are also assessed to determine if they lead to a change in amino acid residue type, and potential changes to protein structures.
Functions, Classes & Methods for estimation, prediction, and
simulation (bootstrap) of Variable Length Markov Chain ('VLMC') Models.
The tools you need to process, analyze, combine, integrate and
plot your fishery data: the georeferenced dataset from the Vessel Monitoring
System (VMS), from the Automatic Information System (AIS) or other tracking
devices, as well as the catches or landings dataset from the Logbook or Vessel
Register. Package 'vmsbase' is equipped by Viewer Tools to visually inspect data
at different steps of the analyses and to produce effective outputs for reports
and scientific publications. Viewers are conceived to show the VMS pings, to
visualize single or multiple tracks for fishing vessels, or to represent the VMS
data on Google Viewer, so that the user can produce easy to interpret and more
realistic visualization of both fishing effort and effort behaviour. Package
'vmsbase' represents the implementation of several R routines which have been
developed by the "Tor Vergata" University of Rome Team involved in the Italian
National Program for the Data Collection Framework for Fisheries Data between
2009-2012.
Using V-algorithm and Newton-Raphson method to obtain multiple-objective optimal design for estimating the shape of dose-response, the ED50 (the dose producing an effect midway between the expected responses at the extreme doses) and the MED (the minimum effective dose level) for the 2,3,4-parameter logistic models and for evaluating its efficiencies for the three objectives.
Voss package provides functionality for generating
realizations of a fractal Brownian function on uniform 1D & 2D
grid with classic and generic versions of the Voss algorithm
(random sequential additions)
Calculates voter transitions comparing two elections, using the function solve.QP() in package 'quadprog'.
Procedures for the manipulation, normalization, and plotting of phonetic and sociophonetic vowel formant data.  vowels is the backend for the NORM website.
Parametric and semiparametric inference for massively parallel
models, i.e., a large number of models with common design matrix, as often
occurs with brain imaging data.
Tools for tree crown structure description based on T-LiDAR data voxelisation
Variable Penalty Dynamic Time Warping for aligning GC-MS chromatograms to a master signal and more. With the appropriate penalty this method performs good alignment without altering the shape of peaks in GC-MS data.
In recognition that there are many factors (genetic loci, macro-genetic factors such as sex,
and environmental factors) that influence the environmental variation, the 'vqtl' package conducts genome
scans that accommodate and target these factors.  The main functions of this package, scanonevar() and
scanonevar.perm() take as input a cross object from the popular 'qtl' package.
Estimation of varying regression segments and a change point in
2-segment regression models with heteroscedastic variances, and with or
without a smoothness constraint at the change point.
vrmlgen creates 3D scatter and bar plots, visualizations of 3D meshes, parametric functions and height maps in web-formats like the Virtual Reality Markup Language (VRML, filetype .wrl) and the LiveGraphics3D format.
A collection of statistical tests for martingale difference hypothesis
Performs variable selection/feature reduction under a clustering or classification framework. In particular, it can be used in an automated fashion using mixture model-based methods (tEIGEN and MCLUST are currently supported).
Calculates the enrichment of associated variant set (AVS) for an array of genomic regions. The AVS is the collection of disjoint LD blocks computed from a list of disease associated SNPs and their linked (LD) SNPs. VSE generates a null distribution of matched random variant sets (MRVSs) from 1000 Genome Project Phase III data that are identical to AVS, LD block by block. It then computes the enrichment of AVS intersecting with user provided genomic features (e.g., histone marks or transcription factor binding sites) compared with the null distribution.
Three steps variable selection procedure based on random forests.
Initially developed to handle high dimensional data (for which number of
variables largely exceeds number of observations), the package is very
versatile and can treat most dimensions of data, for regression and
supervised classification problems. First step is dedicated to eliminate
irrelevant variables from the dataset. Second step aims to select all
variables related to the response for interpretation purpose. Third step
refines the selection by eliminating redundancy in the set of variables
selected by the second step, for prediction purpose.
Designed to facilitate the assimilation, analysis and synthesis of animal location and movement data collected by the VEMCO suite of acoustic transmitters and receivers. As well as database and geographic information capabilities the principal feature of VTrack is the qualification and identification of ecologically relevant events from the acoustic detection and sensor data. This procedure condenses the acoustic detection database by orders of magnitude, greatly enhancing the synthesis of acoustic detection data.
Prepares variables so that data has fewer exceptional cases, making it easier to safely use models in production. Common problems 'vtreat' defends against: Inf, NA, too many categorical values, rare categorical values, new categorical values (levels seen during application, but not during training).   'vtreat::prepare' should be used as you would use 'model.matrix'.
Contains functions for visualization univariate data: ccdplot and qddplot.
Functions and data for use in visual word recognition research:
Computation of neighbors (Hamming and Levenshtein
distances), average distances to neighbors (e.g., OLD20),
and Coltheart's N. Also includes the LD1NN algorithm to
detect bias in the composition of a lexical decision task. Most of
the functions support parallel execution. Supplies wordlists for
several languages. Uses the string distance functions from the stringdist package by Mark van der Loo.
Set of functions that improves the graphical presentations of the functions 'wave.correlation' and 'spin.correlation' (waveslim package, Whitcher 2012) and the 'wave.multiple.correlation' and 'wave.multiple.cross.correlation' (wavemulcor package, Fernandez-Macho 2012b). The plot outputs (heatmaps) can be displayed in the screen or can be saved as PNG or JPG images or as PDF or EPS formats. The W2CWM2C package also helps to handle the (input data) multivariate time series easily as a list of N elements (times series) and provides a multivariate data set (dataexample) to exemplify its use. A description of the package was published in Computing in Science & Engineering (Volume:16, Issue: 6) on Sep. 09, 2014, doi:10.1109/MCSE.2014.96.
R interface to a W3C Markup Validation service.
See <http://validator.w3.org/> for more information.
Multivariate weather generator for daily climate variables based
on weather-states using a Markov chain for modeling the succession of weather states.
Conditionally to the weather states, the multivariate variables are modeled using the family
of Complete Skew-Normal distributions. Parameters are estimated on measured series. Data must
include the variable 'Rain' and can accept as many other variables as desired.
waffect (pronounced 'double-u affect' for 'weighted
affectation') is a package to simulate phenotypic (case or
control) datasets under a disease model H1 such that the total
number of cases is constant across all the simulations (the
constrain in the title). The package also makes it possible to
generate phenotypes in the case of more than two classes, so
that the number of phenotypes belonging to each class is
constant across all the simulations. waffect is used to assess
empirically the statistical power of Genome Wide Association
studies.
Square pie charts (a.k.a. waffle charts) can be used
to communicate parts of a whole for categorical quantities. To emulate the
percentage view of a pie chart, a 10x10 grid should be used with each square
representing 1% of the total. Modern uses of waffle charts do not
necessarily adhere to this rule and can be created with a grid of any
rectangular shape. Best practices suggest keeping the number of categories
small, just as should be done when creating pie charts. Tools are provided
to create waffle charts as well as stitch them together, and to use glyphs
for isotype pictogram creation.
Fit the fixed effect panel data model with heteroskedasticity and
autocorrelation correction.
Generates random data sets including: data.frames, lists,
and vectors.
Consider the intersection of two spaces: the complete solution space
to Ax = b and the N-simplex. The intersection of these two spaces is
a non-negative convex polytope. The package walkr samples from this
intersection using two Monte-Carlo Markov Chain (MCMC) methods:
hit-and-run and Dikin walk. walkr also provide tools to examine sample
quality.
A collection of functions to perform the Application
Programming Interface (API) calls associated with the Walk
Score website (www.walkscore.com) within the R environment.
These functions can be used to query the Walk Score and Transit
Score database for a wide variety of information using R
scripts. This package includes the simple Walk Score and
Transit Score API calls, which return the scores associated
with an input location, as well as calls which return some data
used to calculate the scores. These functions are especially
useful for mass data collection and gathering Walk Score and
Transit Score values for large lists of locations.
Offers three overarching categories of functions to obtain bird vocalization recordings from the web, manage sound files, and facilitate (bio)acoustic analysis in R.
This estimates precise weaning ages
for a given skeletal population
by analyzing the stable nitrogen isotope ratios of them.
Bone collagen turnover rates estimated anew and
the approximate Bayesian computation (ABC)
were adopted in this package.
Helpful tools for data processing and visualisation of results of the hydrological model WASIM-ETH.
Tools and functions to calculate actual evapotranspiration
using surface energy balance models.
This package imports U.S. Geological Survey (USGS) daily hydrologic data from USGS web services, plots the data, addresses some common data problems, and calculates and plots anomalies.
Provides support for creating waterfall charts in R
using both traditional base and lattice graphics.
Lets you connect to any of the Consortium of Universities for the Advancement
of Hydrologic Sciences, Inc. ('CUAHSI') Water Data Center 'WaterOneFlow' web services
and read any 'WaterML' hydrological time series data file. To see list of available
web services, see <http://hiscentral.cuahsi.org>. All versions of 'WaterML'
(1.0, 1.1 and 2.0) and both types of the web service protocol ('SOAP' and 'REST') are supported.
The package has six data download functions: GetServices(): show all public web
services from the HIS Central Catalog. HISCentral_GetSites() and HISCentral_GetSeriesCatalog():
search for sites or time series from the HIS Central catalog based on geographic bounding box,
server, or keyword. GetVariables(): Show a data.frame with all variables on the server.
GetSites(): Show a data.frame with all sites on the server. GetSiteInfo(): Show what variables,
methods and quality control levels are available at the specific site. GetValues(): Given a site
code, variable code, start time and end time, fetch a data.frame of all the observation time
series data values. The GetValues() function can also parse 'WaterML' data from a custom URL or
from a local file. The package also has five data upload functions:
AddSites(), AddVariables(), AddMethods(), AddSources(), and AddValues().
These functions can be used for uploading data to a 'HydroServer Lite' Observations
Data Model ('ODM') database via the 'JSON' data upload web service interface.
Methods for watersheds aggregation and spatial drainage network analysis.
Wrap-around Time Series (WATS) plots for interrupted time series
designs with seasonal patterns.
Computes Bayesian wavelet shrinkage credible intervals
Makes available code necessary to reproduce figures and
tables in papers on the WaveD method for wavelet deconvolution
of noisy signals as presented in The WaveD Transform in R,
Journal of Statistical Software Volume 21, No. 3, 2007.
Wavelet analysis and reconstruction of time series, cross-wavelets and phase-difference (with filtering options), significance with simulation algorithms.
This package contains functions for computing and plotting
discrete wavelet transforms (DWT) and maximal overlap discrete
wavelet transforms (MODWT), as well as their inverses.
Additionally, it contains functionality for computing and
plotting wavelet transform filters that are used in the above
decompositions as well as multiresolution analyses.
Wavelet routines that calculate single sets of wavelet
multiple correlations and cross-correlations out of n variables
(either 1D time series, 2D images or 3D arrays). They can later
be plotted in single graphs, as an alternative to trying to
make sense out of several sets of wavelet correlations or
wavelet cross-correlations. The code is based on the
calculation, at each wavelet scale, of the square root of the
coefficient of determination in a linear combination of
variables for which such coefficient of determination is a
maximum. The code provided here is based on the
wave.correlation routine in Brandon Whitcher's waveslim R
package Version: 1.6.4, which in turn is based on wavelet
methodology developed in Percival and Walden (2000); Gencay,
Selcuk and Whitcher (2001) and others.
For multivariate datasets, this function enables the estimation of missing data using the Weighted AVERage of all possible Regressions using the data available.
Basic wavelet routines for time series (1D), image (2D)
and array (3D) analysis.  The code provided here is based on
wavelet methodology developed in Percival and Walden (2000);
Gencay, Selcuk and Whitcher (2001); the dual-tree complex wavelet
transform (DTCWT) from Kingsbury (1999, 2001) as implemented by
Selesnick; and Hilbert wavelet pairs (Selesnick 2001, 2002).  All
figures in chapters 4-7 of GSW (2001) are reproducible using this
package and R code available at the book website(s) below.
Performs 1, 2 and 3D real and complex-valued wavelet transforms,
nondecimated transforms, wavelet packet transforms, nondecimated
wavelet packet transforms, multiple wavelet transforms,
complex-valued wavelet transforms, wavelet shrinkage for
various kinds of data, locally stationary wavelet time series,
nonstationary multiscale transfer function modeling, density
estimation.
Supplies bootstrap alternatives to traditional hypothesis-test
and confidence-interval procedures such as one-sample and two-sample
inferences for means, medians, standard deviations, and proportions; simple
linear regression; and more. Suitable for general audiences, including
individual and group users, introductory statistics courses, and more advanced
statistics courses that desire an introduction to bootstrap methods.
Provides efficient implementation of the Wild Binary Segmentation and Binary
Segmentation algorithms for estimation of the number and locations of
multiple change-points in the piecewise constant function plus Gaussian
noise model.
Implements detection for the number and locations of
the change-points in a time series using the Wild Binary Segmentation and
the Locally Stationary Wavelet model.
SOMs can be useful tools to group patterns containing several peaks. If peaks do not always occur at exactly the same position, classical distance measures cannot be used. This package provides SOM technology using the weighted crosscorrelation (WCC) distance.
WCE implements a flexible method for modeling cumulative effects of time-varying exposures, weighted according to their relative proximity in time, and represented by time-dependent covariates. The current implementation estimates the weight function in the Cox proportional hazards model. The function that assigns weights to doses taken in the past is estimated using cubic regression splines.
The package contains the WCQ method for detection of QTL
effects in a small mapping population. It also contains
implementation of the Chen-Qin two-sample and one-sample test
of means.
Search, extract and format data from the World Bank's
World Development Indicators
Functions that help in fetching weather data from
websites. Given a location and a date range, these functions help fetch
weather data (temperature, pressure etc.) for any weather related analysis.
Functions to convert between Celsius
and Fahrenheit, to convert between dew point temperature and relative
humidity, and to calculate heat index.
Handle instant weather forecasts and geographical information. It combines multiple sources of information to obtain instant weather forecasts.
Chemical information from around the web. This package interacts
with a suite of web APIs for chemical information.
Lossless webp images are 26% smaller in size compared to PNG. Lossy
webp images are 25-34% smaller in size compared to JPEG. This package reads
and writes webp images into a 3 (rgb) or 4 (rgba) channel bitmap array using
conventions from the 'jpeg' and 'png' packages.
R is used by a vast array of people for a vast array of purposes
- including web analytics. This package contains functions for consuming and
munging various common forms of request log, including the Common and Combined
Web Log formats and various Amazon access logs.
Takes screenshots of web pages, including Shiny applications.
A Stata-style `webuse()` function for importing named datasets from Stata's online collection.
Utility functions for developing web applications. Includes parsers
for application/x-www-form-urlencoded as well as multipart/form-data
and examples of using the parser with either httpuv or rhttpd.
Uses Protovis to provide web graphics for R (exposes most
low-level functions).  Package is still under active
development and shouldn't be considered stable until version
0.1.  Currently uses a web browser to process JavaScript,
although future version will process JavaScript directly and
return the SVG output.  Also does not properly support discrete
labels (e.g. with histograms) or statistical functions.  See
website for more details.
Provides functions to create factor variables with contrasts based on weighted effect coding. In weighted effect coding the estimates from a first order regression model show the deviations per group from the sample mean. This is especially useful when a researcher has no directional hypotheses and uses a sample from a population in which the number of observation per group is different The package also provides functionality for interactions between two factor variables based on weighted effect coding. Please note that this is a beta version: while functional, it does not follow all R conventions.
The WeightedCluster library provides functions to cluster states sequences and weighted data. These functionalities include aggregating replicated cases, an optimized weighted PAM algorithm, function computing cluster quality measures for a range of clustering solutions and miscellaneous functions to plot clustering solutions of state sequences.
Weighted descriptive statistics is the discipline of quantitatively describing the main features of real-valued fuzzy data which usually given from a fuzzy population. One can summarize this special kind of fuzzy data numerically or graphically using this package. To interpret some of the properties of one or several sets of real-valued fuzzy data, numerically summarize is possible by some weighted statistics which are designed in this package such as mean, variance, covariance and correlation coefficent. Also, graphically interpretation can be given by weighted histogram and weighted scatter plot using this package to describe properties of real-valued fuzzy data set.
This packages contains the Weighted Portmanteau Tests as
described in "New Weighted Portmanteau Statistics for Time
Series Goodness-of-Fit Testing' accepted for publication by the
Journal of the American Statistical Association.
Has functions to implement the weighted scores method and CL1 information criteria as an intermediate step for variable/correlation selection for longitudinal categorical and count data in Nikoloulopoulos, Joe and Chaganty (2011, Biostatistics, 12: 653-665) and Nikoloulopoulos (2015a,2015b).
Provides a variety of functions for producing simple weighted statistics, such as weighted Pearson's correlations, partial correlations, Chi-Squared statistics, histograms, and t-tests.  Also now includes some software for quickly recoding survey data and plotting point estimates from interaction terms in regressions (and multiply imputed regressions).  Future versions of the package will be more closely integrated with "anesrake" and additional weighting tools and will provide the option to find weighting benchmarks and weight data using a variety of methodologies.  NOTE: Weighted partial correlation calculations temporarily pulled to address a bug.
The weightTAPSPACK subsets The American Panel Survey (TAPS) data by outcome and covariates, models the attrition rates, imputes data for attrited individuals, and finds weights for analysis.
Provides computational support for flow over weirs, such as sharp-crested, broad-crested, and embankments. Initially, the package supports broad- and sharp-crested weirs.
Convert 'WKT' to 'GeoJSON' and 'GeoJSON' to 'WKT'. Functions
included for converting between 'GeoJSON' to 'WKT', creating both
'GeoJSON' features, and non-features, creating WKT from R objects
(e.g., lists, data.frames, vectors), and linting 'WKT'.
Palettes generated mostly from Wes Anderson movies
This R package provides a computationally efficient way
of fitting weighted linear fixed effects estimators for
causal inference with various weighting schemes.  Imai
and Kim (2012) show that weighted linear fixed effects
estimators can be used to estimate the average treatment
effects under different identification strategies.  This
includes stratified randomized experiments, matching and
stratification for observational studies, first
differencing, and difference-in-differences.  The package
also provides various robust standard errors and a
specification test for standard linear fixed effects
estimators.
Implementation of Weighted Fast Greedy algorithm for community detection in networks with mixed types of attributes.
Integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.
Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
Non parametric alternative to Kolmogorov-Smirnov based
standard GSEA testing.
Inferences about counterfactuals are essential for prediction,
answering what if questions, and estimating causal effects.
However, when the counterfactuals posed are too far from the data at
hand, conclusions drawn from well-specified statistical analyses
become based largely on speculation hidden in convenient modeling
assumptions that few would be willing to defend.  Unfortunately,
standard statistical approaches assume the veracity of the model
rather than revealing the degree of model-dependence, which makes this
problem hard to detect.  WhatIf offers easy-to-apply methods to
evaluate counterfactuals that do not require sensitivity testing over
specified classes of models.  If an analysis fails the tests offered
here, then we know that substantive inferences will be sensitive to at
least some modeling choices that are not based on empirical evidence,
no matter what method of inference one chooses to use.  WhatIf
implements the methods for evaluating counterfactuals discussed in
Gary King and Langche Zeng, 2006, "The Dangers of Extreme
Counterfactuals," Political Analysis 14 (2); and Gary
King and Langche Zeng, 2007, "When Can History Be Our Guide?  The
Pitfalls of Counterfactual Inference," International Studies
Quarterly 51 (March).
logicless templating, reuse templates in many programming
languages including R
Shinohara et. al introduced Whitestripe, an
intensity-based normalization of T1 and T2 images, where normal
appearing white matter performs well, but requires segmentation.
This method performs white matter mean and standard deviation
estimates on data that has been rigidly-registered to the MNI
template and uses histogram-based methods.
Provides programmatic access to the World Health Organization API.
Look up the username and full name of the current user,
the current user's email address and 'GitHub' username,
using various sources of system and configuration information.
Retrieve data from the 'Whoapi' (https://whoapi.com) store of
domain information, including a domain's geographic location, registration
status and search prominence.
Provides very fast access to whole genome, population scale variation data
from VCF files and sequence data from FASTA-formatted files.
It also reads in alignments from FASTA, Phylip, MAF and other file formats.
Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data
from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
Fit, forecast, predict massive spacio-temporal data
Extends the glmnet and relaxnet packages with polynomial basis expansions. Basis expansion is applied to the predictors and a subset of the basis functions is chosen using relaxnet. Predictors may be screened using correlation or t-tests. Screening is done separately within cross-validation folds. Cross-validation may be used to select the order of basis expansion and alpha, the elastic net tuning parameter.
The german Wikibook "GNU R" introduces R to new users.
This package is a collection of functions and datas used in the
german WikiBook "GNU R"
An API client for the Wikidata <http://wikidata.org/> store of
semantic data.
Provides an interface to the Wikipedia web application programming
interface (API), using internet connexion.Three functions provide details for
a specific Wikipedia page : all links that are present, all pages that link
to, all the contributions (revisions for main pages, and discussions for talk
pages). Two functions provide details for a specific user : all contributions,
and general information (as name, gender, rights or groups). It provides
additional information compared to others packages, as WikipediR. It does not
need login. The multiplex network that can be constructed from the results
of the functions of WikipediaR can be modeled as Stochastic Block Model as in
Barbillon P., Donnet, S., Lazega E., and Bar-Hen A. : Stochastic Block Models
for Multiplex networks: an application to networks of researchers, ArXiv
1501.06444, http://arxiv.org/abs/1501.06444.
Public attention is an interesting field of study. The
internet not only allows to access information in no time on
virtually any subject but via page access statistics gathered
by website authors the subject of attention as well can be
studied. For the omnipresent Wikipedia those access statistics
are made available via 'http://stats.grok.se' a server
providing the information as file dumps as well as as web API.
This package provides an easy to use, consistent and traffic
minimizing approach to make those data accessible within R.
A wrapper for the MediaWiki API, aimed particularly at the
Wikimedia 'production' wikis, such as Wikipedia. It can be used to retrieve
page text, information about users or the history of pages, and elements of
the category tree.
MediaWiki is  wiki platform. Providing the infrastructure of Wikipedia, it also offers very sophisticated archiving functionalities.
This package is built to store these wiki's archives to R object - data-frame, lists, vector and variables. All data are downloaded
with the help of MediaWiki REST API. For instance, you can get all revisions made by a contributor - contrib_list(), all the revisions
of a page page_revisions(), or create corpus of contributors - corpus_contrib_create() - and pages corpus_page_create(). Then, you can
make these corpus rich of data about contributors or pages - corpus_contrib_data() or corpus_page_data().
This package provides functions to perform fast variable
selection based on the Wilcoxon rank sum test in the
cross-validation or Monte-Carlo cross-validation settings, for
use in microarray-based binary classification.
Dynamic interaction refers to spatial-temporal associations in the
movements of two (or more) animals. This package provides tools for
calculating a suite of indices used for quantifying dynamic interaction
with wildlife telemetry data. For more information on each of the methods
employed see the references within. The package draws heavily on the
classes and methods developed in the 'adehabitat' packages.
Provides insight into how the best hand for a poker game changes based on the game dealt, players who stay in until the showdown and wildcards added to the base game.  At this time the package does not support player tactics, so draw poker variants are not included.
Analysing convergent evolution using the Wheatsheaf index.
Helps for interfacing with the operating system
particularly for Windows.
Data sets from the World Input Output Database, for the years 1995-2011.
Perform the Wild Scale-Enhanced (WiSE) bootstrap.  Specifically, the user may supply a single or multiple equally-spaced time series and use the WiSE bootstrap to select a wavelet-smoothed model.  Conversely, a pre-selected smooth level may also be specified for the time series.  Quantities such as the bootstrap sample of wavelet coefficients, smoothed bootstrap samples, and specific hypothesis testing and confidence region results of the wavelet coefficients may be obtained.  Additional functions are available to the user which help format the time series before analysis.  This methodology is recommended to aid in model selection and signal extraction.
Note:  This package specifically uses wavelet bases in the WiSE bootstrap methodology, but the theoretical construct is much more versatile.
A set of functions to run code 'with' safely and temporarily
modified global state. Many of these functions were originally a part of the
'devtools' package, this provides a simple package with limited dependencies
to provide access to these functions.
Utility functions to convert between the 'Spatial' classes
specified by the package 'sp', and the well-known binary '(WKB)'
representation for geometry specified by the Open Geospatial Consortium.
Supports 'Spatial' objects of class 'SpatialPoints',
'SpatialPointsDataFrame', 'SpatialLines', 'SpatialLinesDataFrame',
'SpatialPolygons', and 'SpatialPolygonsDataFrame'. Supports 'WKB' geometry
types 'Point', 'LineString', 'Polygon', 'MultiPoint', 'MultiLineString', and
'MultiPolygon'. Includes extensions to enable creation of maps with
'TIBCO Spotfire'.
Approach to the robustness via Weighted Likelihood.
A GUI R implementation of hierarchical Bayesian models of working memory, used for analyzing change detection data.
Distance discriminant analysis method is one of
classification methods according to multiindex performance
parameters.However,the traditional Mahalanobis distance
discriminant method treats with the importance of all
parameters equally,and exaggerates the role of parameters which
changes a little.The weighted Mahalanobis distance is used in
discriminant analysis method to distinguish the importance of
each parameter.In the concrete application,firstly based on the
principal component analysis scheme,a new group of parameters
and their corresponding percent contributions of the parameters
are calculated ,and the weighted matrix is regarded as the
diagonal matrix of the contributions rates.Setting data to
standardization,then the weighted Mahalanobis distance can be
calculated.Besides the methods metioned above,bayes method is
also given.
Analyzing the texture of an image from a multifractal wavelet leader analysis.
Software to book Wavelet Methods for Time Series Analysis,
Donald B. Percival and Andrew T. Walden, Cambridge University
Press, 2000.
Estimates Poole and Rosenthal W-NOMINATE scores from roll
call votes supplied though a 'rollcall' object from package
'pscl'.
Shows the relationship between an independent and dependent variable through Weight of Evidence and Information Value.
Tools for connecting to Wordbank, an open repository for developmental vocabulary data.
Matches words in one file with words in another file and shows index(row number) for the matches
An interface to WordNet using the Jawbone Java API to WordNet.
WordNet (<http://wordnet.princeton.edu/>) is a large lexical database of
English.  Nouns, verbs, adjectives and adverbs are grouped into sets of
cognitive synonyms (synsets), each expressing a distinct concept.  Synsets
are interlinked by means of conceptual-semantic and lexical relations.
Please note that WordNet(R) is a registered tradename.  Princeton
University makes WordNet available to research and commercial users
free of charge provided the terms of their license
(<http://wordnet.princeton.edu/wordnet/license/>) are followed, and
proper reference is made to the project using an appropriate
citation (<http://wordnet.princeton.edu/wordnet/citing-wordnet/>).
This package collects several classical word pools used
most often to provide lists of words in psychological studies
of learning and memory.
Supplies permutation-test alternatives to traditional hypothesis-test
procedures such as two-sample tests for means, medians, and standard deviations;
correlation tests; tests for homogeneity and independence; and more. Suitable for
general audiences, including individual and group users, introductory statistics
courses, and more advanced statistics courses that desire an introduction to
permutation tests.
Data from the United Nation's World Population Prospects 2008
Data from the United Nation's World Population Prospects
2010
Data from the United Nation's World Population Prospects 2012
Provides data from the United Nation's World Population Prospects 2015.
Explore data in the 'wpp2015' (or 2012, 2010) package using a 'shiny' interface.
Functions to assist in the processing and
exploration of data from environmental monitoring programs.
The package name stands for "water quality" and reflects the
original focus on time series data for physical and chemical
properties of water, as well as the biota. Intended for
programs that sample approximately monthly, quarterly or
annually at discrete stations, a feature of many legacy data
sets. Most of the functions should be useful for analysis of
similar-frequency time series regardless of the subject
matter.
Fits weighted quantile sum regression models, calculates weighted quantile sum index and estimated component weights.
wrassp is a wrapper around Michel Scheffers's libassp (Advanced
Speech Signal Processor). The libassp library aims at providing
functionality for handling speech signal files in most common audio formats
and for performing analyses common in phonetic science/speech science. This
includes the calculation of formants, fundamental frequency, root mean
square, auto correlation, a variety of spectral analyses, zero crossing
rate, filtering etc. This wrapper provides R with a large subset of
libassp's signal processing functions and provides them to the user in a
(hopefully) user-friendly manner.
A powerful yet simple graphical tool available in the field of psychometrics is the Wright Map (also known as item maps or item-person maps), which presents the location of both respondents and items on the same scale. Wright Maps are commonly used to present the results of dichotomous or polytomous item response models. The 'WrightMap' package provides functions to create these plots from item parameters and person estimates stored as R objects. Although the package can be used in conjunction with any software used to estimate the IRT model (e.g. 'TAM', 'mirt', 'eRm' or 'IRToys' in 'R', or 'Stata', 'Mplus', etc.),  'WrightMap' features special integration with 'ConQuest' to facilitate reading and plotting its output directly.The 'wrightMap' function creates Wright Maps based on person estimates and item parameters produced by an item response analysis. The 'CQmodel' function reads output files created using 'ConQuest' software and creates a set of data frames for easy data manipulation, bundled in a 'CQmodel' object. The 'wrightMap' function can take a 'CQmodel' object as input or it can be used to create Wright Maps directly from data frames of person and item parameters.
Function for writing a SNNS pattern file from a data.frame
or matrix.
Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX)
files from one or more data frames. Each data frame will be
written to a separate named worksheet in the Excel spreadsheet.
The worksheet name will be the name of the data frame it contains
or can be specified by the user.
A collection of robust statistical methods based on Wilcox' WRS functions. It implements t-tests (independent and dependent samples), ANOVA (including between-within subject designs) and nonparametric ANCOVA models based on robust location measures.
Contains functions for working with the Worldwide Reference System
(WRS) 1 and 2 systems used by NASA. WRS-1 applies to Landsat 1-3, WRS-2
applies to Landsat 4-8. The package has functions for retrieving a given
path and row as a polygon, and for retrieving the path(s) and row(s)
containing a given raster or vector.
Contains the Worldwide Reference System (WRS) 1 and 2 polygon
data from NASA, for use by the wrspathrow package. WRS-1 and WRS-2
Shape files courtesy of the U.S. Geological Survey, from
http://landsat.usgs.gov/tools_wrs-2_shapefile.php
A collection of implementations of classical and novel
algorithms for weighted sampling without replacement.
Includes performance measurements and results of repeated
experiment runs (for correctness checks) for code in the
'wrswoR' package.
This open-source software package enables researchers to predict
individual ethnicity using his/her surname, geolocation, and other attributes
such as gender and age. The method utilizes the Bayes' rule to compute the
posterior probability of each racial category for any given individual voter.
The package implements methods described in Imai and Khanna (2016) <DOI:10.1093/pan/mpw001>.
Entropy weighted k-means (ewkm) is a weighted subspace
clustering algorithm that is well suited to very high
dimensional data. Weights are calculated as the importance of
a variable with regard to cluster membership.  The two-level
variable weighting clustering algorithm tw-k-means (twkm)
introduces two types of weights, the weights on individual
variables and the weights on variable groups, and they are
calculated during the clustering process.  The feature group
weighted k-means (fgkm) extends this concept by grouping
features and weighting the group in addition to weighting
individual features.
A parallel implementation of Weighted Subspace Random
Forest.  The Weighted Subspace Random Forest algorithm was
proposed in the International Journal of Data Warehousing and
Mining, 8(2):44-63, 2012, proposed by Baoxun Xu, Joshua Zhexue
Huang, Graham Williams, Qiang Wang, and Yunming Ye.  The algorithm
can classify very high-dimensional data with random forests built
using small subspaces.  A novel variable weighting method is used
for variable subspace selection in place of the traditional random
variable sampling.This new approach is particularly useful in
building models from high-dimensional data.
We propose weighted SVM methods with penalization form. By
adding weights to loss term, we can build up weighted SVM
easily and examine classification algorithm properties under
weighted SVM. Through comparing each of test error rates, we
conclude that our Weighted SVM with boosting has predominant
properties than the standard SVM have, as a whole.
Estimation and regression modeling of subdistribution functions for competing risks data with adjustment for covariate-dependent censoring, as described in He et al. (2015).
Allows form managers to download entries from their respondents
using Wufoo JSON API. Additionally, the Wufoo reports - when public - can be
also acquired programmatically. Note that building new forms within this package
is not supported.
Methods to calculate and interpret climate change signals and time series from climate multi-model ensembles. Climate model output in binary 'NetCDF' format is read in and aggregated over a specified region to a data.frame for statistical analysis. Global Circulation Models, as the 'CMIP5' simulations, can be read in the same way as Regional Climate Models, as e.g. the 'CORDEX' or 'ENSEMBLES' simulations. The package has been developed at the 'Wegener Center for Climate and Global Change' at the University of Graz, Austria.
Book is "Linear Mixed Models: A Practical Guide Using
Statistical Software" published in 2006 by Chapman Hall / CRC
Press
A wrapper function and GUI for the X12 binaries
A graphical user interface for the x12 package
The US Census provides a seasonal adjustment program now
called 'X-13ARIMA-SEATS' building on both earlier Census programs called
X-11 and X-12 as well as the SEATS program by the Bank of Spain. Census
offers both source and binary versions -- which this package integrates
for use by other R packages.
Functions to extract business financial information from
an Extensible Business Reporting Language ('XBRL') instance file and the
associated collection of files that defines its 'Discoverable' Taxonomy
Set ('DTS').
Provides a tool for extracting information (entities and relations between them) in text datasets. It also emphasizes the results exploration with graphical displays. It is a rule-based system and works with hand-made dictionaries and local grammars defined by users. X.ent uses parsing with Perl functions and JavaScript to define user preferences through a browser and R to display and support analysis of the results extracted. Local grammars are defined and compiled with the tool Unitex, a tool developed by University Paris Est that supports multiple languages. See ?xconfig for an introduction.
Extensions of Exponential Random Graph Models (ERGM): Temporal Exponential Random Graph Models (TERGM), Generalized Exponential Random Graph Models (GERGM), Temporal Network Autocorrelation Models (TNAM), and Relational Event Models (REM).
Datasets and definitions of generic functions used in dependencies of the xergm package.
Extreme Gradient Boosting, which is an
efficient implementation of gradient boosting framework.
This package is its R interface. The package includes efficient
linear model solver and tree learning algorithms. The package can automatically
do parallel computation on a single machine which could be more than 10 times faster
than existing gradient boosting packages. It supports various
objective functions, including regression, classification and ranking. The
package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Interface to the XGobi and XGvis programs for graphical
data analysis.
The central goal of XGR is to provide a data interpretation system. It is designed to make a user-defined gene or SNP list more interpretable by comprehensively utilising ontology and network information to reveal relationships and enhance opportunities for biological discovery. XGR is unique in supporting a broad range of ontologies (including knowledge of biological and molecular functions, pathways, diseases and phenotypes - in both human and mouse) and different types of networks (including functional, physical and pathway interactions). There are two core functionalities of the XGR. The first is basic infrastructures for easy access to built-in ontologies and networks. The second is extensible functions, now including 1) enrichment analysis using either built-in or custom ontologies, 2) similarity analysis for calculating semantic similarity between genes (or SNPs) based on their ontology annotation profiles, and 3) network analysis for identification of gene networks given a query list of (significant) genes or SNPs. Together with its web app, XGR aims to provide a user-friendly tool for exploring genomic relations at the gene and SNP level.
R scripts for plotting and assessing XHMM whole-exome-sequencing-based CNV calls. XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.
Conduct the likelihood ratio tests for Hardy-Weinberg equilibrium at marker loci on the X chromosome.
Provides a simple XML tree parser/generator. It includes functions
to read XML files into R objects, get information out of and into nodes, and
write R objects back to XML code. It's not as powerful as the 'XML' package
and doesn't aim to be, but for simple XML handling it could be useful. It was
originally developed for the R GUI and IDE RKWard (https://rkward.kde.org), to
make plugin development easier.
Plotting ggplot2 graphs using the XKCD style.
Provides comprehensive functionality to read, write and format Excel data.
Provides external JAR dependencies for the XLConnect package
Provide R functions to read/write/format Excel 2007 and Excel 97/2000/XP/2003 file formats.
The xlsxjars package collects all the external jars
required for the xlxs package. This release corresponds to POI
3.10.1.
A toolbox for meta-analysis. This package includes a collection of functions for (1) implementing robust multivariate meta-analysis of continuous or binary outcomes; and (2) testing and correcting of publication bias in multivariate meta-analysis settings.
This is Xiaobei's miscellaneous classes and functions useful when
developing R packages, particularly for OOP using R Reference Class.
Many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP.  Also offers access to an
'XPath' "interpreter".
Work with XML files using a simple, consistent interface. Built on
top of the 'libxml2' C library.
XML2R is a framework that reduces the effort required to transform
XML content into number of tables while preserving parent to child
relationships.
Fit Markov Networks to a wide range of high-throughput genomics data.
Tests whether a set of counts fit a given expected ratio. For
example, a genetic cross might be expected to produce four types in the
relative frequencies of 9:3:3:1. To see whether a set of observed counts
fits this expectation, one can examine all possible outcomes with xmulti() or a
random sample of them with xmonte() and find the probability of an observation
deviating from the expectation by at least as much as the observed. As a
measure of deviation from the expected, one can use the log-likelihood
ratio, the multinomial probability, or the classic chi-square statistic. A
histogram of the test statistic can also be plotted and compared with the
asymptotic curve.
Analysis of crossover interference in experimental crosses,
particularly regarding the gamma model.
Xpose is collection of functions to be used as a model
building aid for non-linear mixed effects (population) analysis
using NONMEM. It facilitates data set checkout, exploration and
visualization, model diagnostics, candidate covariate identification
and model comparison.
A hierarchical Bayesian approach to assess functional impact of mutations on gene expression in cancer. Given a patient-gene matrix encoding the presence/absence of a mutation, a patient-gene expression matrix encoding continuous value expression data, and a graph structure encoding whether two genes are known to be functionally related, xseq outputs: a) the probability that a recurrently mutated gene g influences gene expression across the population of patients;
and b) the probability that an individual mutation in gene g in an individual patient m influences expression within that patient.
This is the tool set for crystallographer to design and analyze crystallization experiments, especially for ribosome from Mycobacterium tuberculosis.
Can be used for coloring output in terminals.
It was developed for the standard Ubuntu terminal but should be compatible
with any terminal using xterm or ANSI escape sequences. If run in windows,
RStudio, or any other platform not supporting such escape sequences it
gracefully passes on any output without modifying it.
Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Calculates a number of valuation adjustments including CVA, DVA,
FBA, FCA, MVA and KVA. A two-way margin agreement has been implemented. For
the KVA calculation three regulatory frameworks are supported: CEM, SA-CCR and
IMM. The probability of default is implied through the credit spreads curve.
Currently, only IRSwaps are supported.
A method for creating vertical histograms sharing a y-axis using
base graphics.
This package provides an alternative canonical
correlation/redundancy analysis function, with associated
print, plot, and summary methods.  A method for generating
helio plots is also included.
Performs nearest neighbor-based imputation using one or more alternative
approaches to processing multivariate data. These include methods based on canonical
correlation analysis, canonical correspondence analysis, and a multivariate adaptation
of the random forest classification and regression techniques of Leo Breiman and Adele
Cutler. Additional methods are also offered. The package includes functions for
comparing the results from running alternative techniques, detecting imputation targets
that are notably distant from reference observations, detecting and correcting
for bias, bootstrapping and building ensemble imputations, and mapping results.
This is a simple wrapper for the yakmo K-Means library (developed by Naoki Yoshinaga, see http://www.tkl.iis.u-tokyo.ac.jp/~ynaga/yakmo/). It performs fast and robust (orthogonal) K-Means.
This collection of data exploration tools was developed at
Yale University for the graphical exploration of complex
multivariate data; barcode and gpairs now have their own
packages.  The new big.read.table() provided here may be
useful for large files when only a subset is needed.
This package implements the libyaml YAML 1.1 parser and emitter (http://pyyaml.org/wiki/LibYAML) for R.
Yield curve or zero-coupon prices interpolation and extrapolation using the Nelson-Siegel, Svensson, Smith-Wilson models, and Hermite cubic splines.
Calculates cryptic scores for genes using the ratio
(Cheung et al., 2008), the 3' enrichment method
(DeGennaro et al., 2013) and the probabilistic
method. It also provide	methods to estimates
cryptic transcription start sites.
The purpose of this package is to provide methods to interpret multiple
linear regression and canonical correlation results including beta weights,structure coefficients,
validity coefficients, product measures, relative weights, all-possible-subsets regression,
dominance analysis, commonality analysis, and adjusted effect sizes.
Deploy, maintain, and invoke models via the Yhat
REST API.
Modelling the yield curve with some parametric models.
The models implemented are: Nelson-Siegel, Diebold-Li and
Svensson.  The package also includes the data of the term
structure of interest rate of Federal Reserve Bank and European
Central Bank.
The clustering by k-means of using the target variable.
To determine the number of clusters with the variance of
the target variable in the cluster.
Tools for analyzing performances of cricketers and cricket
teams based on 'yaml' match data from Cricsheet<http://cricsheet.org>.
An R implementation of Yplant, combined with the QuasiMC
raytracer. Calculate radiation absorption, transmission and scattering,
photosynthesis and transpiration of virtual 3D plants.
Inference procedures accommodate a flexible range of hazard ratio patterns with a two-sample semi-parametric model. This model contains the proportional hazards model and the proportional odds model as sub-models, and accommodates non-proportional hazards situations to the extreme of having crossing hazards and crossing survivor functions. Overall, this package has four major functions: 1) the parameter estimation, namely short-term and long-term hazard ratio parameters; 2) 95 percent and 90 percent point-wise confidence intervals and simultaneous confidence bands for the hazard ratio function; 3) p-value of the adaptive weighted log-rank test; 4) p-values of two lack-of-fit tests for the model. See the included "read_me_first.pdf" for brief instructions. In this version (1.1), there is no need to sort the data before applying this package.
Simple method for comparison of gene
expression generated across different experiments, and on
different platforms; that does not require global
renormalization, and is not restricted to comparison of
identical probes. YuGene works on a range of microarray dataset
distributions, such as between manufacturers. The resulting
output allows direct comparisons of gene expression between
experiments and experimental platforms.
Simulation and Inference for Stochastic Differential Equations.
Yummly.com is one of the world's largest and most powerful recipe search sites and this package aims to provide R bindings for publicly available Yummly.com Recipe API (https://developer.yummly.com/).
Principled methods to impute multivariate left-censored data and zeros in compositional data sets
R package accompanying the book Working with dynamic
models for agriculture and environment, by Daniel Wallach
(INRA), David Makowski (INRA), James W. Jones (U.of Florida),
Francois Brun (ACTA), in preparation for June 2013.
A framework that brings together an abundance of common
statistical models found across packages into a unified interface, and
provides a common architecture for estimation and interpretation, as well
as bridging functions to absorb increasingly more models into the
collective library.  Zelig allows each individual package, for each
statistical model, to be accessed by a common uniformly structured call and
set of arguments.  Moreover, Zelig automates all the surrounding building
blocks of a statistical work-flow --procedures and algorithms that may be
essential to one user's application but which the original package
developer did not use in their own research and might not themselves
support. These include bootstrapping, jackknifing, and re-weighting of data.
In particular, Zelig automatically generates predicted and simulated
quantities of interest (such as relative risk ratios, average treatment
effects, first differences and predicted and expected values) to interpret
and visualize complex models.
Add-on package for Zelig 5. Enables the use of a variety of logit
and probit regressions.
This package provides an R wrapper for the Zendesk API
Functions to compute compositional turnover using zeta-diversity, the number of species shared by multiple assemblages. The package includes a Zeta.order() function to compute zeta-diversity for a specific number of assemblages, and a Zeta.decline() function to compute zeta-diversity for a range of numbers of assemblages. It also includes additional functions to explain how zeta-diversity varies with distance and with differences of environmental variables between assemblages, using linear regressions and generalized additive models.
Provides MCMC algorithms for the analysis of
zero-inflated count models. The case of stochastic search
variable selection (SVS) is also considered.  All MCMC samplers
are coded in C++ for improved efficiency. A data set
considering the demand for health care is provided.
Zillow, an online real estate company, provides real estate and
mortgage data for the United States through a REST API. The ZillowR package
provides an R function for each API service, making it easy to make API
calls and process the response into convenient, R-friendly data structures.
See <http://www.zillow.com/howto/api/APIOverview.htm> for the Zillow API
Documentation.
Fits observation-driven and parameter-driven models for zero-inflated time series
This package contains a database of city, state, latitude,
and longitude information for U.S. ZIP codes from the
CivicSpace Database (August 2004) augmented by Daniel Coven's
federalgovernmentzipcodes.us web site (updated January 22,
2012). Previous versions of this package (before 1.0) were
based solely on the CivicSpace data, so an original version of
the CivicSpace database is also included.
Statistical models and utilities for the analysis of word
frequency distributions.  The utilities include functions for
loading, manipulating and visualizing word frequency data and
vocabulary growth curves.  The package also implements several
statistical models for the distribution of word frequencies in
a population.  (The name of this library derives from the most
famous word frequency distribution, Zipf's law.)
Calculate and plot scattering matrix coefficients for plane waves at interface.
Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
An S3 class with methods for totally ordered indexed
observations. It is particularly aimed at irregular time series
of numeric vectors/matrices and factors. zoo's key design goals
are independence of a particular index/date/time class and
consistency with ts and base R by providing methods to extend
standard generics.
The analysis and inference of faunal remains recovered from
archaeological sites concerns the field of zooarchaeology. The zooaRch package
provides analytical tools to make inferences on zooarchaeological data.
Functions in this package allow users to read, manipulate, visualize, and
analyze zooarchaeological data.
ZooImage is a free (open source) solution for analyzing
digital images of zooplankton. In combination with ImageJ, a
free image analysis system, it processes digital images,
measures individuals, trains for automatic classification of
taxa, and finally, measures zooplankton samples (abundances,
total and partial size spectra or biomasses, etc.)
zm(), called with any active plot allow to enter an
interactive session to zoom/navigate any plot. The development
version, as well as binary releases can be found at
https://github.com/cbarbu/R-package-zoom
Reproducible and remixable species distribution modelling. The
package reads user submitted modules from an online repository, runs full
SDM workflows and returns output that is fully reproducible.
Combines a forecast of a time series, using the function forecast(), with the dynamic plots from dygraphs.
Makes zebra-striped tables (tables with alternating row colors)
in LaTeX and HTML formats easily from a data.frame, matrix, lm, aov, anova,
glm, coxph, nls, fitdistr, mytable and cbind.mytable objects.
The zyp package contains an efficient implementation of Sen's slope method (Sen, 1968) plus implementation of Xuebin Zhang's (Zhang, 1999) and Yue-Pilon's (Yue, 2002) prewhitening approaches to determining trends in climate data.
Please send questions and comments regarding BH to
http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/boostheaders-devel
Please send comments and bug reports to
ismrp@jasp.ism.ac.jp
Please send questions and comments to etiennead@gmail.com.
Please send questions and comments regarding NScluster to
ismrp@jasp.ism.ac.jp
Please send questions and comments regarding pbdR to
RBigData@gmail.com
Please send questions and comments regarding Rcpp to
rcpp-devel@lists.r-forge.r-project.org
Please send questions and comments regarding RInside to
rcpp-devel@lists.r-forge.r-project.org
Please send questions and comments regarding SAPP to
ismrp@jasp.ism.ac.jp
Please send questions and comments regarding timsac to
ismrp@jasp.ism.ac.jp
Dane R. Van Domelen <vandomed@gmail.com>
Renata T C Yokota <Renata.Yokota@wiv-isp.be>
Pedro Rafael Diniz Marinho <pedro.rafael.marinho@gmail.com>
Carlos J. Gil Bellosta <cgb@datanalytics.com>
Sy Han (Steven) Chiou  <schiou@d.umn.edu>
P Lafaye de Micheaux <lafaye@dms.umontreal.ca>
Robin K. S. Hankin <hankin.robin@gmail.com>
Lafaye de Micheaux Pierre <lafaye@dms.umontreal.ca>
Joao Vitor Dias Monteiro <monte092@umn.edu>
Ricardo de Matos Simoes <ricardo_dematossimoes@dfci.harvard.edu>
Karel Van den Meersche <karel.van_den_meersche@cirad.fr>
Jose Antonio Garcia Bueno <joseagbueno@gmail.com>
Anderson Rodrigo da Silva <anderson.agro@hotmail.com>
Ana Belen Nieto Librero <ananieto@usal.es>
David Alejandro Martell Juarez <alex91599@gmail.com>
A. Jonathan R. Godfrey <a.j.godfrey@massey.ac.nz>
L. A. van der Ark <L.A.vanderArk@uva.nl>
Francesca Marta Lilja Di Lascio <marta.dilascio@unibz.it>
K. Gerald van den Boogaart <support@boogaart.de>
P. Lafaye de Micheaux <lafaye@dms.umontreal.ca>
Dennis J. J. Walvoort <dennis.Walvoort@wur.nl>
Rafael S. de Souza <rafael.2706@gmail.com>
Ernst van der Maaten <ernst.vandermaaten@gmail.com>
Eduardo L. T. Conceicao <mail@eduardoconceicao.org>
Marcelino de la Cruz Rot <marcelino.delacruz@upm.es>
Alexandre Adalardo de Oliveira <ecovirtualpackage@gmail.com>
Tomas J. Aragon Developer <aragon@berkeley.edu>
Manuel Oviedo de la Fuente <manuel.oviedo@usc.es>
Eduardo San Miguel Martin
<eduardo.san.miguel.martin@gmail.com>
Shaiful Anuar Abu Bakar <saab@um.edu.my>
Vincent T van Hees <vincentvanhees@gmail.com>
Gabriel Coelho Goncalves de Abreu <abreu_ga@yahoo.com.br>
Geraldine Van der Auwera <vdauwera@broadinstitute.org>
Rafael de Andrade Moral <rafael_moral@yahoo.com.br>
"Markus Loecher, Berlin School of Economics and Law (BSEL)" <markus.loecher@gmail.com>
Alejandro Quintela del Rio <aquintela@udc.es>
Jorge Luis Ojeda Cabrera <jojeda@unizar.es>
Eufrasio de A. Lima Neto <eufrasio@de.ufpb.br>
Ricardo Jorge de Almeida Queiroz Filho <rjaqfcin@gmail.com>
Jan van der Laan <djvanderlaan@unrealizedtime.nl>
"Antoine Tremblay, Dalhousie University" <trea26@gmail.com>
"Robin K. S. Hankin" <hankin.robin@gmail.com>
Elizabeth Holmes - NOAA Federal <eli.holmes@noaa.gov>
Fernando Ferraz do Nascimento <fernandofn@ufpi.edu.br>
Antonio Hermes M. da Silva-Junior <hermes@ccet.ufrn.br>
Alysha M De Livera <alyshad@unimelb.edu.au>
Stephen L R Ellison <s.ellison@lgc.co.uk>
Cherise R. Chin Fatt <cherise.chinfatt@utdallas.edu>
Marcelino de la Cruz <marcelino.delacruz@upm.es>
Julio Cesar Hernandez Sanchez <juliocesar_avila@usal.es>
Rune Haubo Bojesen Christensen <rune.haubo@gmail.com>
Euloge Clovis Kenne Pagui <kenne@stat.unipd.it>
Joaquin Bienvenido Ordieres Mere <j.ordieres@upm.es>
ACHIEPO Odilon Yapo M. <kingodilon@gmail.com>
Marieke van der Maaten-Theunissen <marieketheunissen@gmail.com>
Peter J. van der Most <p.j.van.der.most@umcg.nl>
"Shingo Yamamoto (gloops, Inc.)" <si.yamamoto@gloops.com>
Vito M. R. Muggeo <vito.muggeo@unipa.it>
Sy Han (Steven) Chiou <schiou@hsph.harvard.edu>
Raymond K. W. Wong <raymondkww.dev@gmail.com>
María del Carmen Calatrava Moreno
<mc.calatrava.moreno@gmail.com>
Pierre Lafaye de Micheaux <lafaye@dms.umontreal.ca>
Titus von der Malsburg <malsburg@posteo.de>
Rutger M. van den Bor <r.m.vandenbor@umcutrecht.nl>
Marcelino de la Cruz <marcelino.delacruz@urjc.es>
Jakson Alves de Aquino <jalvesaq@gmail.com>
Prof. Juan David Velasquez H. <jdvelasq@unal.edu.co>
Willem Robert van Hage <willem.van.hage@synerscope.com>
Frederick Kin Hing Phoa <fredphoa@stat.sinica.edu.tw>
Stephen A Sefick Jr. <ssefick@gmail.com>
Daniel A. Dos Santos <pseudalopex_79@yahoo.com>
Jesus Maria Rodriguez Rodriguez <jesusmro@ono.com>
K. Gerald van den Boogaart <boogaart@math.tu-freiberg.de>
Antonio Fabio Di Narzo <antonio.fabio@gmail.com>
Joerg Schlarmann (aka Produnis) <schlarmann@produnis.de>
Maintainers are not available to give advice on using a package
they did not author.
Several parts are still preliminary and may be changed in the
future. This typically includes function and argument names, as
well as defaults for arguments and return values.
Several parts are still preliminary and may be changed in the
future. this typically includes function and argument names, as
well as defaults for arguments and return values.
SEVERAL PARTS ARE STILL PRELIMINARY AND MAY BE CHANGED IN THE
FUTURE. THIS TYPICALLY INCLUDES FUNCTION AND ARGUMENT NAMES, AS
WELL AS DEFAULTS FOR ARGUMENTS AND RETURN VALUES.
The header file blaswrap.h, f2c.h and fgsg.h are from the
VisualStudio library created by Julie Langou.
This software comes with NO warranty! It is NOT intended to be
used in clinical applications! For evaluation only!
Package stable is available at http://www.robustanalysis.com
In order to use this package you need your personal Project Vote
Smart API key. To get an API-key you need to sign up for access
to PVS' API (see http://votesmart.org/share/api for details).
Whenever you are using pvsR make sure that your personal PVS
API key is saved as a character string in the variable pvs.key
(pvs.key <- "yourkey"). If there is no valid PVS API key saved
in the variable pvs.key the functions in this package won't
work. This program is free software; you can redistribute it
and/or modify it under the terms of the GNU General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later
version. This program is distributed in the hope that it will
be useful, but WITHOUT ANY WARRANTY; without even the implied
warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the GNU General Public License for more details.
More information about the system requirements can be found in
the README file.
For details and derivation, see Braumoeller, Bear F. "Guarding
Against False Positives in Qualitative Comparative Analysis."
Forthcoming, Political Analysis.
This will be used generally to communicate with HTTP servers and
specifically in the SOAP package, HTML forms and for accessing
data on Web sites that require more state information than
simply URL access (e.g. cookies).
NOTICE regarding the transfer of data from Retrosheet: The
information used here was obtained free of charge from and is
copyrighted by Retrosheet. Interested parties may contact
Retrosheet at "www.retrosheet.org".
See http://www.json.org/JSON_checker/test.zip for tests. We now
use code from the libjson project
(http://libjson.sourceforge.net).
The files configure.in, cleanup, Makevars.in and Makevars.win are
based on the same files found in RPostgreSQL. I thank Dirk
Eddelbuettel for giving the go ahead to reuse their build
setup. Copyright of the unmodified protions remains with the
original authors. The files in src/libpq/ are part of
PostgreSQL. Please refer to http://www.postgresql.org/ for
their copyright and license.
The name "Scrabble" is a trademark of Hasbro, Inc. in the United
States and Canada; elsewhere, it is a trademark of Mattel.
This is experimental software distributed free of charge and
comes with no warranty!  Exercise professional caution.
In version 2.4.0 of this package, a new approach to garbage
collection has been implemented and it is experimental. You can
disable it via the configuration option --enable-nodegc=no.
However, you are encouraged to use this and report problems as
the results are beneficial and being able to produce any errors
should they occur will be very helpful.
2015-01-03 19:56:29 UTC; Steven Harris Ranney
2012-06-11 14:36:21 UTC; Sophie Baillargeon
2010-01-31 13:29:31 UTC; Jens Henrik Badsberg
2015-02-26 17:45:29 UTC; Sophie Baillargeon
2015-08-23 02:08:23 UTC; Fernando de Villar
2016-04-03 15:31:41 UTC; LARMARANGE Joseph
2016-01-21 14:56:42 UTC; Lucas Venezian Povoa
2016-02-23 18:10:11 UTC; LARMARANGE Joseph
2014-08-28 18:37:46 UTC; Sophie Baillargeon
2014-10-17 18:39:03 UTC; Christiane Dargatz
2014-12-04 17:04:02 UTC; Sophie Baillargeon
2016-03-19 23:54:53 UTC; Sophie Baillargeon
Image Magick (for reading non PPM format), dcraw
(for reading RAW images).
Optionally Latte-integrale, Bertini, and Macaulay2.
Cygwin is required for each of the above for Windows users. See
INSTALL file for details.
ImageMagick (http://imagemagick.org) or
GraphicsMagick (http://www.graphicsmagick.org) or LyX
(http://www.lyx.org) for saveGIF(); (PDF)LaTeX for saveLatex();
SWF Tools (http://swftools.org) for saveSWF(); FFmpeg
(http://ffmpeg.org) or avconv (https://libav.org/avconv.html)
for saveVideo()
Requires external zip utility, available in path.
On windows, it's sufficient to install RTools.
JAGS (>= 3.4.0) (see
http://mcmc-jags.sourceforge.net)
OpenBUGS (>= 3.2.2), hence Windows or Linux
MAGeCK (=0.51, from
http://sourceforge.net/p/mageck/wiki/Home/), bowtie2
(http://bowtie-bio.sourceforge.net/bowtie2/index.shtml)
OpenCL library; double-precision AMD or Nvidia GPU;
GNU make
Java (>= 7.0); Stanford CoreNLP
<http://nlp.stanford.edu/software/corenlp.shtml> (>= 3.5.2)
couchDB instance to connect to and work on.
nvcc (release >= 3.1) (NVIDIA Cuda Compiler
driver); Linux operating system; GNU make.
libcurl: libcurl-devel (rpm) or
libcurl4-openssl-dev (deb).
xclip <http://sourceforge.net/projects/xclip/> or
xsel <http://www.vergenet.net/~conrad/software/xsel/> for
accessing the X11 clipboard
none, one or more of JAGS (>= 3.0.0), WinBUGS (>=
1.4), OpenBUGS (>= 3.2.2)
GLPK library package (e.g., libglpk-dev on
Debian/Ubuntu)
Xft (only needed for platforms other than OSX and
Windows)
Python (>= 2.7 or >= 3.5) and elex package
Debian or Ubuntu system with access to Goto Blas,
Intel MKL, Atlas development build as well as a Nvidia GPU with
CUDA support
zlib headers and library. OpenSSL headers and
library. LibSSH2 (optional on non-Windows) to enable the SSH
transport.
Nvidia's CUDA toolkit (>= release 5.0) and Nvidia
GPU with compute capibility >=2.0
C++11 (supporting at least std=c++0x), OpenCL
shared library (provided by an SDK such as AMD/NVIDIA) and
OpenCL headers including the C++ header file (provided by
Khronos if not by SDK)
libhdf5 (>= 1.8.x) with C++ interface
(--enable-cxx=yes) and v18 API enabled
BLAS/LAPACK libraries, PLASMA library , NVIDIA CUDA
toolkit, MAGMA library
Apache Hadoop >= 2.6.0
(https://hadoop.apache.org/releases.html#Download); Obsolete:
Hadoop core >= 0.19.1 and <= 1.0.3 or CDH3
(http://www.cloudera.com); standard unix tools (e.g., chmod)
ImageMagick (http://imagemagick.org) or
GraphicsMagick (http://www.graphicsmagick.org)
A C library with the fesetround/fegetround
functions.
Package vignettes based on R Markdown v2 require
Pandoc (http://pandoc.org). The function rst2pdf() and
vignettes based on reStructuredText require rst2pdf
(https://github.com/rst2pdf/rst2pdf).
ImageJ (>=1.48) (see http://imagej.nih.gov/ij/),
Java
JAGS (>= 3.0.0) (see
http://mcmc-jags.sourceforge.net)
At least trial version of LocalSolver to be
downloaded from http://www.localsolver.com/download.html
ADMB version 11 (http://admb-project.org/) for
use.admb=TRUE; see readme.txt
MonetDB, available from http://www.monetdb.org or
MonetDBLite R package
jags (>= 4.0.0) (see
http://mcmc-jags.sourceforge.net)
pandoc, ipython (>= 3.0) or jupyter,
ipython/jupyter notebook optional dependencies, pywin32 (on
windows)
pandoc (http://johnmacfarlane.net/pandoc) for
exporting markdown files to other formats.
For the MERLIN wrapper, MERLIN
(www.sph.umich.edu/csg/abecasis/merlin) must be installed and
pointed to in the PATH environment variable.
The 'Japanese.Rnw' vignette requires uplatex and
dvipdfmx.
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. MS-MPI (Microsoft HPC Pack 2012) or MPICH2 (>=
1.4.1p1) on Windows.
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. MS-MPI (Microsoft HPC Pack 2012 R2 MS-MPI
Redistributable Package) on Windows.
OpenMPI (>= 1.5.4) on Solaris, Linux and Mac.
(Parallel) HDF5 and (Parallel) NetCDF4 (4.1 or later)
libraries. No MPI library required on Windows.
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. No MPI library required on Windows yet.
Linux, Mac OSX, and Windows, or ZeroMQ library >=
4.0.4. Solaris 10 needs ZeroMQ library 4.0.7 and OpenCSW.
Poppler C++ interface library and headers
Phoenix NLME with Phoenix Modeling Language (PML)
license
For Windows users, Rtools (see
http://cran.r-project.org/bin/windows/Rtools/).
Python 2.7.x or Python 3.2.x-3.4.x, NumPy (Python
scientific computing package)
JAGS (>= 3.2.0) (see
http://mcmc-jags.sourceforge.net)
proj 4.4.6 or higher (http://proj.maptools.org/)
Python (>= 2.7.0) with header files and shared
library (UNIX) / static library (Windows)
Qt4 libraries and headers (http://qt.nokia.com),
cmake (http://www.cmake.org)
OpenBugs for functions bugs() and openbugs() or
WinBUGS 1.4 for function bugs()
linux (>= 3.0), libapparmor-dev (optional)
A valid Bloomberg installation. API headers and
dynamic library are downloaded from
<https://github.com/Rblp/blp> during the build step. See
<http://bloomberg.github.io/blpapi-docs/cpp/3.8> as well as
<http://www.bloomberglabs.com/api/> for API documentation.
GMP (GNU MP bignum library from http://gmplib.org/)
pandoc (>= 1.12.3) -
http://johnmacfarlane.net/pandoc
A Debian-based system with the libapt-pkg-dev
package
A 64-bit POSIX OS such as Linux or OS X with IANA
time zone data in /usr/share/zoneinfo as well as a C++11
compiler.
Octave (>= 3.2.4) and its development files
GNU make, Windows: cmd.exe and cscript.exe,
Solaris: g++ is required
The hiredis library (eg via package libhiredis-dev
on Debian/Ubuntu, hiredis-devel on Fedora/RedHat, or directly
from source from https://github.com/redis/hiredis)
A C++11 compiler. Version 4.6.* of g++ (as
currently in Rtools) is insufficient; versions 4.8.*, 4.9.* or
later will be fine.
DieHarder library (>= 3.31.1) from
http://www.phy.duke.edu/~rgb/General/dieharder.php, GNU GSL for
the GSL random-number generators
MOSEK (http://www.mosek.com) and MOSEK License for
use of Rmosek, optional use of the pogs optimizer may require
CUDA/GPU accoutrements.
for building from source: GDAL >= 1.6.3, library
from http://trac.osgeo.org/gdal/wiki/DownloadSource and PROJ.4
(proj >= 4.4.9) from http://download.osgeo.org/proj/; GDAL OSX
frameworks built by William Kyngesburye at
http://www.kyngchaos.com/ may be used for source installs on
OSX.
GEOS (>= 3.2.0); for building from source: GEOS
from http://trac.osgeo.org/geos/; GEOS OSX frameworks built by
William Kyngesburye at http://www.kyngchaos.com/ may be used
for source installs on OSX.
OpenGL, GLU Library, zlib (optional), libpng
(>=1.2.9, optional), FreeType (optional)
R built as a shared or static library, 'MPI'
library.
Java JDK 1.2 or higher (for JRI/REngine JDK 1.4 or
higher), GNU make
Java (>= 1.5), zlib headers and library.
Oracle Java 7,Apache Kafka 2.8.0-0.8.1.1
notepad.exe, mark.exe (>= 8.0) (or mark32.exe and
mark64.exe) and rel_32.exe (see README.txt)
libmariadb-client-dev | libmariadb-client-lgpl-dev
| libmysqlclient-dev (deb), mariadb-devel (rpm), mariadb |
mysql-connector-c (brew), mysql56_dev (csw)
Oracle Instant Client or Oracle Database Client
Poppler Glib interface headers and libraries
(<http://poppler.freedesktop.org/>) [Debian/Ubuntu:
libpoppler-glib-dev, Fedora: poppler-glib-devel]
GNU make, Windows: cmd.exe and cscript.exe
ProtoBuf libraries and compiler version 2.2.0 or
later. On Debian/Ubuntu these are libprotoc-dev and
libprotobuf-dev, while on Fedora protobuf-devel and
protobuf-compiler are needed.
The 'curl' binary has to be in the path (and this
is checked at package startup), a user API key (which can be
obtained from http://www.pushbullet.com), and one or more
devices to push messages to which may be any one of an (Android
or iOS) phone, the (Chrome or Firefox, or Opera or Safari)
browser or (Windows or Mac) desktop application provided the
corresponding Pushbullet 'app' has been installed on any one of
these.
Windows, Python (>= 2.4.0), ArcGIS (>= 9.2)
Python (>= 2.7) and Python headers and libraries
(See the INSTALL file)
QuantLib library (>= 1.4.0) from
http://quantlib.org, Boost library from http://www.boost.org
need the RDRAND instruction on Intel CPU. and C
compiler must be able to compile a GNU-style in-line assembler.
NW RFC SDK downloaded from http://service.sap.com
Tcl/Tk (>= 8.5), Tktable (>= 2.9, optional)
The Boost 'program_options' library
(http://boost.org) is required.
Python (>=2.6) in path and NumPy module installed,
ghostscript (>=9.0)
ZeroMQ >= 3.0.0 libraries and headers (see
<http://www.zeromq.org/>; Debian packages libzmq3, libzmq3-dev,
Fedora packages zeromq3, zeromq3-devel)
GLPK library, including -dev or -devel part
zlib headers and libraries, optionally also bzip2
and POSIX-compliant regex functions.
(PDF)LaTeX (http://www.latex-project.org/) with
'pdfpages' package for studentGrowthPlot option in visualizeSGP
to bind together student growth plots into school catalogs
Komodo Edit (http://www.openkomodo.com), SciViews-K
(http://www.sciviews.org/SciViews-K)
Antiword (<http://www.winfield.demon.nl/>) for
reading MS Word files, pdfinfo and pdftotext from Poppler
(<http://poppler.freedesktop.org/>) for reading PDF
Teradata Aster Database 5.10 (AD5.10) or higher,
Teradata Aster Analytical Foundation 5.10 (AA5.10) or higher
(5.11 or higher is recommended)
PARI/GP >= 2.3.0 [strongly recommended for
logkda()]
nvcc (release >= 7.1) (NVIDIA Cuda Compiler
driver); GNU make
V8: libv8-dev (deb), v8-devel (rpm), v8-3.14 (arch)
PhantomJS (http://phantomjs.org) for taking
screenshots, ImageMagick (http://www.imagemagick.org) or
GraphicsMagick (http://www.graphicsmagick.org) and OptiPNG
(http://optipng.sourceforge.net) for manipulating images.
Java (>= 5.0); WordNet database files (direct
download:
<http://wordnetcode.princeton.edu/3.0/WNdb-3.0.tar.gz>; Debian
and Fedora package: wordnet)
Perl (>= 5.0), Unitex (>= 3.0
http://www-igm.univ-mlv.fr/~unitex/)
The standalone program xgobi must be installed
additionally, see file README, or INSTALL.windows under Windows
Accurate, Adaptable, and Accessible Error Metrics for Predictive
Models
Access to Abbyy Optical Character Recognition (OCR) API
Tools for Approximate Bayesian Computation (ABC)
Data Only: Tools for Approximate Bayesian Computation (ABC)
ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance
Analysis with this package
Implementation of Artificial Bee Colony (ABC) Optimization
Approximate Bayesian Computational Model for Estimating P2
Approximate Bayesian Computation via Random Forests
Modelling Multivariate Data with Additive Bayesian Networks
Improved False Positive Control of Gene-Permuting GSEA with
Absolute Filtering
Abundant regression and high-dimensional principal fitted
components
Abrupt Change-Point or Aberration Detection in Point Series
Functions for Processing and Analyzing Accelerometer Data
Functions for Processing Minute-to-Minute Accelerometer Data
Missing Value Imputation for Accelerometer Data
Creation and Evaluation of Acceptance Sampling Plans
Data Quality Visualization Tools for Partially Accruing Data
Tools for Autoregressive Conditional Duration Models
ace() and avas() for selecting regression transformations
Estimating Age Modification Effect on Genetic and Environmental
Variance Components in Twin Models
Align-and-Count Method comparisons of RFLP data
Implements ACME Estimator of Bird and Bat Mortality by Wind
Turbines
Affymetrix SNP Probe-Summarization using Non-Negative Matrix
Factorization
Modelling dependence with multivariate Archimax (or any
user-defined continuous) copulas
Convenience functions for analytical Customer Relationship
Management
Download, Manipulate, and Present American Community Survey and
Decennial Data from the US Census
Gene Enrichment Analysis from ACSN Maps or GMT Files
Algorithmic Complexity for Short Strings
Data Only: Algorithmic Complexity of Short Strings (Computed via
Coding Theorem Method)
A Companion Package for the Book "A Course in Statistics with R"
Asymptotic Classification Theory for Cognitive Diagnosis
Actuarial Functions and Heavy Tailed Distributions
ada: an R package for stochastic boosting
Applies Multiclass AdaBoost.M1, SAMME and Bagging
Discrete and Global Optimization Routines
A Class of Adaptive Elastic Net Methods for Censored Data
Adaptive Semiparametric Regression with Simultaneous Confidence
Bands
Implementation of a generic adaptive Monte Carlo Markov Chain
sampler
Binomial and Multinomial Additive Hazards Models
Fit Additive Hazards Models for Survival Analysis
Additivity Tests in the Two Way Anova with Single Sub-class
Numbers
A Package for Analysis of Accelerated Destructive Degradation
Test Data
Analysis of Ecological Data : Exploratory and Euclidean Methods
in Environmental Sciences
Exploratory Analysis of Genetic and Genomic Data
An S4 Lattice-Based Package for the Representation of
Multivariate Data
Analysis of Habitat Selection by Animals
adephylo: exploratory analyses for the phylogenetic comparative
method
Adequacy of probabilistic models and generation of pseudo-random
numbers
calculate ad hoc distance thresholds for DNA barcoding
identification
An Interpretation of the ADM method - automated detection
algorithm
Adaptive Mixture of Student-t distributions
Regularized Model with Selecting the Number of Non-Zeros
Fast Clustering Using Adaptive Density Peak Detection
Upper Clopper-Pearson Confidence Limits for Burn-in Studies
under Additional Available Information
Wavelet Analysis of Genomic Data from Admixed Populations
Change Point Analysis in ARIMA Forecasting
Download and process AEMO price and demand data
Model-Based Estimation of Confounder-Adjusted Attributable
Fractions
Hybrid Simulation and Genome Scan for Dominant Markers
Accelerated Failure Time Model with Generalized Estimating
Equations
Aggregate Numeric, Date and Categorical Variables by an ID
Aggregation Operators and Preordered Sets
Statistical Tools for Measuring Agreement
Statistical Procedures for Agricultural Research
Calculate Agreement or Consensus in Ordered Rating Scales
Estimation in Adaptive Group Sequential Trials
Miscellaneous plotting and utility functions
Regularization for semiparametric additive hazards regression
Estimation and Testing of Average Hazard Ratios
Model Selection and Multimodel Inference Based on (Q)AIC(c)
Estimation of Box-Cox Power Transformation Parameter
Tools for reading AIDA (http://aida.freehep.org/) files into R
Interpolation of Irregularly and Regularly Spaced Data
Adaptive Kmeans algorithm based on threshold
Immunoglobulin Clonal Lineage and Diversity Analysis
Quantile Regression Using Asymmetric Laplace Distribution
Estimating Absolute Protein Quantities from Label-Free LC-MS/MS
Proteomics Data
Haplotype Two Snips Out of a Paired Group of Patients
Comparison of Alternative Multiple Sequence Alignments
Alignment of Phonetic Sequences Using the 'ALINE' Algorithm
Generate Age-Length Keys for fish populations
Allele Imputation and Haplotype Reconstruction from Pedigree
Databases
Identifying unique multilocus genotypes where genotyping error
and missing data may be present
Allele Retention, Inbreeding, and Demography
A fast, unbiased and exact allelic exact test
Computes all of a word's possible spellings
R Client for the Lagotto Altmetrics Platform
Generalization of the Convex Hull of a Sample of Points in the
Plane
Obtain Alpha-Outlier Regions for Well-Known Probability
Distributions
Implementation of the 3D Alpha-Shape for the Reconstruction of
3D Sets from a Point Cloud
Data to accompany Applied Linear Regression 3rd edition
Data to accompany Applied Linear Regression 4rd edition
Multivariate Curve Resolution Alternating Least Squares
(MCR-ALS)
Accelerated line search algorithm for simultaneous orthogonal
transformation of several positive definite symmetric matrices
to nearly diagonal form
Optimal Experimental Designs for Accelerated Life Testing
Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
European Commission Annual Macro-Economic (AMECO) Database
Adaptive Management of Epidemiological Interventions
Additive and Multiplicative Effects Models for Networks and
Relational Data
This package includes pricing function for selected American
call options with underlying assets that generate payouts
A Multidirectional Optimum Ecotope-Based Algorithm
Statistical Analysis of Amplicon Data of the Same Sample to
Identify Artefacts
Simple and Canonical Correspondence Analysis
Analogue and Weighted Averaging Methods for Palaeoecology
Additional Functions for Use with the Analogue Package
Model Layer for Automatic Data Analysis via CSV File
Interpretation
Functions for analysis of fMRI datasets stored in the ANALYZE or
NIFTI format
Assigning Ancestry Based on Population References
Statistical analysis of surveys with anchoring vignettes
An extended Bayesian Learning Technique developed by Dr. Geoff
Webb
Adaptive Neuro Fuzzy Inference System in R
Simulate a Bus Route Creel Survey of Anglers
Animal track reconstruction for high frequency 2-dimensional
(2D) or 3-dimensional (3D) movement data
A Gallery of Animations in Statistics and Utilities to Create
Animations
AnnotLists: A tool to annotate multiple lists from a specific
annotation file
Anonymize Data Containing Personally Identifiable Information
Statistical Methods for Anthropometric Data
Analysis of Overdispersed Data using S3 methods
aoristic analysis with spatial output (kml)
Process the Apache Web Server Log Combined Files
Create American Psychological Association (APA) Style Tables
Phylogenetic Methods for Multiple Gene Data
Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic
Regression" (3rd ed.)
Another Plot PACKage: stem.leaf, bagplot, faces, spin3R,
plotsummary, plothulls, and some slider functions
Pre- and Postprocessing for AP-MS data analysis based on
spectral counts
Compute Appell's F1 hypergeometric function
Approximate Path for Penalized Likelihood Estimators
Functions and Data Sets for 'Applied Predictive Modeling'
Amyloid Propensity Prediction Neural Network
Bayesian prediction of complex computer codes
Datasets from Draper and Smith "Applied Regression Analysis"
(3rd Ed., 1998)
Tools for the a Priori Comparison of Regression Modelling
Strategies
Amdahl's Profiler, Directed Optimization Made Easy
General Utility Functions for the 'Agricultural Production
Systems Simulator'
Edit, Run and Evaluate APSIM Simulations Easily Using R
apsrtable model-output formatter for social science
Functions to help display air quality model output and
monitoring data
Interface methods to use with an ActiveQuant Master Server
AquaEnv - an integrated development toolbox for aquatic chemical
model generation
Segmentation of an autoregressive Gaussian process of order 1
Rigorous Data Reduction and Error Propagation of Ar40 / Ar39
Data
Example Datasets from Archaeological Research
Plant Root System Architecture Analysis Using DART and RSML
Files
Tools for Storing, Restoring and Searching for R Objects
Tools for Archiving, Managing and Sharing R Objects via GitHub
Activated Region Fitting, fMRI data analysis (3D)
Fractional ARIMA (and Other Long Memory) Time Series Modeling
Arfima-MLM Estimation For Repeated Cross-Sectional Data
Command line optional and positional argument parser
Improved Communication to Users with Respect to Problems in
Function Arguments
Data Analysis Using Regression and Multilevel/Hierarchical
Models
Analysis of Large Affymetrix Microarray Data Sets
A Probe-Level Data File Format Used by 'aroma.affymetrix'
[deprecated]
Copy-Number Analysis of Large Microarray Data Sets
Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework
Tools for Simulating Direct Behavioral Observation Recording
Procedures Based on Alternating Renewal Processes
Apply a Function to a Margin of an Array
Aligned Rank Transform for Nonparametric Factorial Analysis
Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme
VArying) Model
Gene and Pathway p-values computed using the Adaptive Rank
Truncated Product
Mining Association Rules and Frequent Itemsets
Mining NB-Frequent Itemsets and NB-Precise Rules
Visualizing Association Rules and Frequent Itemsets
Data Sets for "Applied Survival Analysis Using R""
A Collection of Statistical Tools for Biologists
Export R objects to several markup languages
Simulations for adaptive seamless designs
Linkage Map Construction using the MSTmap Algorithm
Animal Social Network Inference and Permutations for Ecologists
A collection of functions for estimating centrographic
statistics and computational geometries for spatial point
patterns
Bayesian Inference on Causal Genetic Variants using Affected
Sib-Pairs Data
A General Framework for Multivariate Analysis with Optimal
Scaling
Augments the Use of 'Asreml' in Fitting Mixed Models
Readable Check Functions to Ensure Code Integrity
A Lightweight Core of the 'assertive' Package
Assertions to Check Properties of Strings
Assertions to Check Properties of Dates and Times
Assertions to Check Properties of Matrices
Assertions to Check Properties of Models
Assertions to Check Properties of Numbers
Assertions to Check Properties of Variables
Assertive Programming for R Analysis Pipelines
Optimal pricing of assets with fixed expiry date
A Suite of R Functions Implementing Spline Smoothing Techniques
Calculate the Assortativity Coefficient of Weighted and Binary
Networks
Statistical Tests for Genetic Association Studies
A Computational Tool for Astrochronology
Astronomy: time and position functions, misc. utilities
Applied Statistical Time Series Analysis
Average Shifted Visual Predictive Checks
Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic
Data
Regression Analysis of Sparse Asynchronous Longitudinal Data
Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
Inference for Average Treatment Effects using Covariate
Balancing
A GTK GUI for teaching basic concepts in statistical inference,
and doing elementary bayesian tests
Automatically Tuned Markov Chain Monte Carlo
Acoustic Traveltime Calculations for 1-D Atmospheric Models
Support Querying Axibase Time-Series Database
Threshold independent performance measures for probabilistic
classifiers
Variable Selection with Random Forest and the Area Under the
Curve
Approximate Unconditional and Permutation Tests
Sparse Autoencoder for Automatic Learning of Representative
Features from Unlabeled Data
Automated Hierarchical Multiple Regression with Assumptions
Checking
Partial Least Squares Regression with Backward Selection of
Predictors
Minimum Distance Estimation in Autoregressive Model
Automated Vector Autoregression Models and Networks
Calculation of Average Population Attributable Fractions and
Confidence Intervals
Class and Methods Definitions for Packages 'aws', 'adimpro',
'fmri' and 'dti'
Interface with Azure Machine Learning Datasets, Experiments and
Web Services
Adaptive differential evolution, b6e6rl variant
Bayesian Bacterial Growth Curve Analysis in R
Bayesian Bootstrap Predictive Mean Matching - Multiple and
Single Imputation for Discrete Data
Bubble Chart to Compare Biological Annotations by using DAVID
Modeling Framework for Cellular Communities in their
Environments
Bayesian Analysis of Computer Code Output (BACCO)
Reimplementations of Functions Introduced Since R-3.0.0
Learning Causal Cyclic Graphs from Unknown Shift Interventions
Exploring Portfolio-Based Conjectures About Financial
Instruments
Choice of the Hyperparameter Omega in the Bayesian Adjustment
for Confounding (BAC) Algorithm
Bayesian Average Error approach to Sample Size Determination
Ensemble bagging and boosting classifiers
Balanced and Spatially Balanced Sampling
Functions and datasets for books by Jeff Gill
Bayesian Meta-Analysis of Diagnostic Test Data
Analysis and Visualization of Macroevolutionary Dynamics on
Phylogenetic Trees
Functions for simple A/B split test and multi-armed bandit
analysis
Batch Effect Removal (in Phenotype Prediction using Gene Data)
Bayesian Model Averaging using Bayesian Adaptive Sampling
Infrastructure for Computing with Basis Functions
Recovering a Basic Space from Issue Scales
Age-Specific Survival Analysis from Incomplete
Capture-Recapture/Recovery Data
Batching Routines in Parallel and Passing Command-Line Arguments
to R
Statistical Experiments on Batch Computing Clusters
Consistent Batch Means Estimation of Monte Carlo Standard Errors
Convert Categorical Representations of Logicals to Actual
Logicals
An R Package for Data Reduction by Battery Reduction
Bayesian Feature Allocation Model for Tumor Heterogeneity
An Implementation of Rubin's (1981) Bayesian Bootstrap
Power Calculations and Bayesian Analysis of Count Distributions
and FECRT Data using MCMC
Bayesian Analysis of Censored Regression Models Under Scale
Mixture of Skew Normal Distributions
Functions and Datasets for the book "Bayesian Data Analysis"
The Bayesian Dynamic Conditional Correlation GARCH Model
Graphical User Interface for bayesTFR, bayesLife and bayesPop
Computation of Bayes Factors for Common Designs
Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations
Scalable Rejection Sampling for Bayesian Hierarchical Models
Bayesian Analysis of Generalized Elliptical Semi-Parametric
Models and Flexible Measurement Error Models
Bayesian Regression Model with Mixture of Two Scaled Inverse Chi
Square as Hyperprior
Bayesian Melding of GPS and DR Path for Animal Tracking
Bayesian Beta regression: joint mean and precision modeling
Designing Bayesian Multi-Arm Multi-Stage Studies
Mixtures-of-Experts Markov Chain Clustering and Dirichlet
Multinomial Clustering
Default Bayesian Hypothesis Tests for Correlation, Partial
Correlation, and Mediation
Bayesian Mixture Survival Models using Additive
Mixture-of-Weibull Hazards, with Lasso Shrinkage and
Stratification
BayesNI: Bayesian Testing Procedure for Noninferiority with
Binary Endpoints
Hierarchical Bayesian analysis of ecological count data
Bayesian Analysis of Small Area Estimation
Computation of Bayes factors for interrupted time-series designs
MCMC Sampling of Bayesian Linear Models via Summary Statistics
Bayesian Survival Regression with Flexible Error and Random
Effects Distributions
Bayesian thresholds mixed-effects models for categorical data
Bayes Factors, Model Choice and Variable Selection in Linear
Models
R Utilities Accompanying the Software Package BayesX
R Package Distribution of the BayesX C++ Sources
Bayesian analysis of haplotype association using Markov Chain
Monte Carlo
R Functions for Bayesian Hazard Rate Estimation
R Package for Baylor University Educational Psychology
Quantitative Courses
Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
Bayesian Analysis of Significantly Mutated Genes in Cancer
On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
Solving and Optimizing Large-Scale Nonlinear Systems
Bayesian bandwidth estimation and semi-metric selection for the
functional kernel regression with unknown error density
Bayesian bandwidth estimation for multivariate kernel regression
with Gaussian error
Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
Miscellaneous Helper Functions for B. Bischl
Tools for General Maximum Likelihood Estimation
Gene Regulatory Network Inference with Bc3net
Bias-Corrected Bayesian Classification with Selected Features
Business Cycle Dating and Plotting Tools
Bayesian composition estimator: estimating sample (taxonomic)
composition from biomarker data
The Bayesian Causal Effect Estimation Algorithm
Bayesian Models for Cost-Effectiveness Analysis in the Presence
of Structural Zero Costs
Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
Estimation, and Non-Parametric Phase Modelling
Bayesian Palaeoclimate Reconstruction from Pollen
Bayesian Hierarchical Clustering Using Spike and Slab Models
Bayesian Analysis of Change Point Problems
Behavioral change point analysis of animal movement
Bayesian Multiple Changepoint Detection Using Metadata
Advanced Analysis of B Cell Receptor Repertoire Data
Bayesian Continual Reassessment Method for Phase I
Dose-Escalation Trials
Cross-Validation for the SVD (Bi-Cross-Validation)
Bayesian Graph Selection Based on Birth-Death MCMC Approach
Optimisation of Bayesian Decision Problems
Inference and design for predictive values in binary diagnostic
tests
Remove Weekends and Holidays from ggplot2 Axes
Routines for Block Diagonal Symmetric matrices
Bayesian Inference for Discrete Weibull Regression
Analysis of Illumina BeadArray SNP data including MSV markers
Visualization via Beanplots (like Boxplot/Stripchart/Violin
Plot)
Bayesian Estimate of Age-specific Nest Survival Probabilities
Quantifies effects of geo/eco distance on genetic
differentiation
Matrices Backed by Binary PED Files (PLINK)
Genomic Region Processing using Tools Such as Bedtools, Bedops
and Tabix
Easily Play Notification Sounds on any Platform
The Bee Swarm Plot, an Alternative to Stripchart
28 benchmark densities from Berlinet/Devroye (1994)
Benchmark and Frontier Analysis Using DEA and SFA
Benford Analysis for Data Validation and Forensic Analytics
Statistical Tests for Evaluating Conformity to Benford's Law
Bent-Cable Regression for Independent Data or Autoregressive
Time Series
Bayesian analysis for exponential random graph models
Function Collection Related to Plotting and Hydrology
Bessel -- Bessel Functions Computations and Approximations
Bayesian Estimation Supersedes the t-Test
Detecting rare variants for quantitative traits using nuclear
families
Partitioning beta diversity into turnover and nestedness
components
Functions to incorporate taxonomic uncertainty on multivariate
analyses of ecological data
Simulation, estimation and forecasting of Beta-Skew-t-EGARCH
models
Breaks For Additive Season and Trend (BFAST)
Binary Generalized Extreme Value Additive Models
Bayesian Estimation in Generalized Linear Models
Gaussian Mixture Modeling Algorithms And The Belief-based
Mixture Modeling
Markov Beta and Gamma Processes for Modeling Hazard Rates
Block Gibbs Sampler with Incomplete Multinomial Distribution
Useful Functions for Box, Hunter and Hunter II
Bias correction of the parameter estimates of the beta
regression model
Calculates the bidimensional regression between two 2D
configurations
Inferences for bi- and trifactorial trial designs
Tools for Survey Statistics in Educational Assessment
BLAS routines for native R matrices and big.matrix objects
Utilities for 'big.matrix' Objects from Package 'bigmemory'
Case-Control Analysis of Multi-Allelic Loci
Scalable Least-Angle Regression and Lasso
Big Lasso: Extending Lasso Model Fitting to Big Data in R
bounded memory linear and generalized linear models
Manage Massive Matrices with Shared Memory and Memory-Mapped
Files
A shared resource interface for Bigmemory Project packages
PCA, Transpose and Multicore Functionality for 'big.matrix'
Objects
An Interface to Google's 'BigQuery' 'API'
Generalized Ridge Regression (with special advantage for p >> n
cases)
Table, Apply, and Split Functionality for Matrix and
'big.matrix' Objects
Top Scoring Pair based methods for classification
Power for SNP analyses using silver standard cases
Estimates Mixture Models for Case-Control Data
Variable Selection for Binary Data Using the EM Algorithm
Mean and Variance Modeling of Binary Data
Multi-Class Discriminant Analysis using Binary Predictors
Methods for Analyzing Binned Income Data
Evaluation and experimental design for binomial group testing
Asymptotic simultaneous confidence intervals for many-to-one
comparisons of proportions
Data Generation with Binary and Continuous Non-Normal Components
Simultaneous generation of multivariate binary and normal
variates
Binomial Confidence Intervals For Several Parameterizations
'Taxonomic' Specification and Parsing Methods
Generates binomial random numbers via the coupling from the past
algorithm
Efficient MCMC for Binomial Logit Models
Confidence intervals and sample size determination for a
binomial proportion under simple random sampling and pooled
sampling
Performing diagnostics on binomial regression models
Concurrent Generation of Binary, Ordinal and Continuous Data
Cut Numeric Values into Evenly Distributed Groups
Exact Binary Sequential Designs and Analysis
Feature Selection and Classification with the Embedded
Validation Procedures for Biomedical Data Analysis
Package for Community Ecology and Suitability Analysis
Multilevel Modeling of Dendroclimatical Fluctuations
Biodiversity Assessment Using Functional Tools
Process Biogas Data and Predict Biogas Production
Point Data Quality Assessment and Coordinate Conversion
BioGeography with Bayesian (and Likelihood) Evolutionary
Analysis in R Scripts
Simulation of Dynamic Microbial Inactivation
Predict environmental conditions from biological observations
An interface package (beta) for the BIOM file format
Find Biomarkers in Two-Class Discrimination Problems
Functional Annotation and Biological Data Retrieval with R
Ensemble Platform for Species Distribution Modeling
Utilities for the BIOM (Biological Observation Matrix) Format
Simulation of deterministic and stochastic biochemical reaction
networks using Petri Nets
Search and Download Papers from the bioRxiv Preprint Server
From BIOlogical Sequences to MultiDimensional Scaling
Tools for Electromyogram Signals (EMG) Analysis
Tools for Biometry and Applied Statistics in Agricultural
Science
Visualising bipartite networks and calculating some (ecological)
indices
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
BIPOD (Bayesian Inference for Partially Observed diffusions)
Methods to Analyse Ring Re-Encounter Data
Tools to find bad commits with git bisect
Toolkit to Identify Candidate Synthetic Lethality
Bayesian Isotonic Regression with Bernstein Polynomials
A S3 Class for Vectors of 64bit Integers
Binarization and Trinarization of One-Dimensional Data
Estimating the Parameters of Some Bivariate Distributions
Sample size calculations for bivariate longitudinal data
Conduct Univariate and Bivariate Wavelet Analyses
Functions to compute the biweight mean vector and covariance &
correlation matrices
Business Days Calculations and Utilities
Plots (Slightly Extended) Bland-Altman Plots
Calculate and Analyze Blau Status for Measuring Social Distance
Black-Litterman and Copula Opinion Pooling Frameworks
Analyze biotic homogenization of landscapes
Fitting block ERGM given the block structure on social networks
Binomial linear and linear-expit regression
Data Files and Functions Accompanying the Book "Bayesian Data
Analysis in Ecology using R, BUGS and Stan"
Coclustering Package for Binary, Categorical, Contingency and
Continuous Data-Sets
blockmatrix: Tools to solve algebraic systems with partitioned
matrices
Creates strings that show a text message in 8 by 8 block letters
An R package for Generalized and classical blockmodeling of
valued networks
Latent and Stochastic Block Model Estimation by a 'V-EM'
Algorithm
Randomization for block random clinical trials
Nested Block Designs for Unstructured Treatments
Block, Assign, and Diagnose Potential Interference in Randomized
Experiments
Statistical Comparisons with Distance-Function Based Permutation
Tests
Request Data from the U.S. Bureau of Labor Statistics API
Benchmark dose analysis for dose-response data
Mediation analysis with missing data using bootstrap
Bayesian Sampling for Stick-Breaking Mixtures
The pseudo-likelihood method for pairwise binary markov networks
Bundle Methods for Regularized Risk Minimization Package
Bayesian Models for Rare Variant Association Analysis
Learning Discrete Bayesian Network Classifiers from Data
Data Generator based on Bayesian Network Model
Bayesian Network Structure Learning, Parameter Learning and
Inference
Bagged k-Nearest Neighbors Survival Prediction
Bayesian Estimation for Normal Heteroscedastic Nonlinear
Regression Models
Ferguson-Klass Type Algorithm for Posterior Normalized Random
Measures
A Bayesian Nonparametric Algorithm for Time Series Clustering
Bayesian Non- and Semi-Parametric Model Fitting
Bayesian Network Structure Learning from Data with Missing
Values
Bayesian Output Analysis Program (BOA) for MCMC
Profilling of Peripheral Blood Mononuclear Cells using CyTOF
Bacterium and Virus Analysis of Orthologous Groups (BOG) is a
Package for Identifying Differentially Regulated Genes in the
Light of Gene Functions
Interface to the Boilerpipe Java Library
Bayesian Optimal INterval (BOIN) Design for Single-Agent and
Drug- Combination Phase I Clinical Trials
Functions for Elementary Bayesian Inference
An Improved Multiple Testing Procedure for Controlling False
Discovery Rates
Construction, Simulation and Analysis of Boolean Networks
Boosted Multivariate Trees for Longitudinal Data
A modular framework to bag or boost any estimation procedure
Optimized GWAS cohort subset selection for resequencing studies
Bootstrap Functions (Originally by Angelo Canty for S)
Bootstrapped Confidence Intervals for (Negative) Likelihood
Ratio Tests
Bootstrap Methods for Various Network Estimation Routines
Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Bootstrapped Response and Correlation Functions
A bootstrap test for the probability of ruin in the classical
risk process
Bootstrap Subsamplings of Sparse Partial Least Squares -
Discriminant Analysis for Classification and Signature
Identification
Functions for the Book "An Introduction to the Bootstrap"
Fast, Exact Bootstrap Principal Component Analysis for High
Dimensional Data
Bootstrap Tolerance Levels for Credit Scoring Validation
Statistics
Bayesian Ordination and Regression AnaLysis
Wrapper Algorithm for All-Relevant Feature Selection
a Bunch of Structure and Sequence Analysis
Analytic Solutions for (ground-water) Boussinesq Equation
Double Box Plot for Two-Axes Correlation
Biplot of Multivariate Data Based on Principal Components
Analysis
Beta Product Confidence Procedure for Right Censored Data
bPeaks: an intuitive peak-calling strategy to detect
transcription factor binding sites from ChIP-seq data in small
eukaryotic genomes
Bayesian Phylogeographic and Ecological Clustering
Visualize Combined Action Response Surfaces and Report BRAID
Analyses
Fitting Dose Response with the BRAID Combined Action Model
Helper functions to misc3d and rgl packages for brain imaging
Basic wavelet analysis of multivariate time series with a
visualisation and parametrisation using graph theory
Bootstrapped Robustness Assessment for Qualitative Comparative
Analysis
Species Richness Estimation and Modeling
An R Package for Multiple Break-Point Detection via the
Cross-Entropy Method
Templating Framework for Report Generation
Extracting Usable Data from the Grad Cafe Results Search
Bias reduction in binomial-response generalized linear models
Brier score decomposition of probabilistic forecasts for binary
events
Bayesian Regularization for Feed-Forward Neural Networks
Convert Statistical Analysis Objects into Tidy Data Frames
A Compression Format Optimized for the Web
Bayesian Inference on the Ratio of Two Poisson Rates
Interface to the 'OpenBUGS' MCMC Software
Statistical methods for safety assessment in agricultural field
trials
Bayesian Survival Model with Lasso Shrinkage Using Generalized
Weibull Regression
Nonparametric Smoothing of the Hazard Function
Bayes Screening and Model Discrimination
bspmma: Bayesian Semiparametric Models for Meta-Analysis
Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing
Matrix Estimates
Birnbaum-Saunders Model Based on Skew-Normal Distribution
Temporal Exponential Random Graph Models by Bootstrapped
Pseudolikelihood
Estimates univariate function via Bayesian trend filtering
Modelling Heterogeneity in Paired Comparison Data
Buckley-James Regression for Survival Data with High-Dimensional
Covariates
Markov model for bursty behavior in streams
Bayesian Analysis of a Vector Autoregressive Model with
Stochastic Volatility and Time-Varying Parameters
A Simple alternative to proportional Venn diagrams
The Stark-Parker algorithm for bounded-variable least squares
Solvers for Boundary Value Problems of Differential Equations
Bayesian Variant Selection: Bayesian Model Uncertainty
Techniques for Genetic Association Studies
Baumgartner Weiss Schindler Test of Equal Distributions
Extended Inference for Lasso and Elastic-Net Regularized Cox and
Generalized Linear Models
Infering large-scale gene networks with C3NET
C5.0 Decision Trees and Rule-Based Models
Simple, Multiple and Joint Correspondence Analysis
Bootstrap Confidence Regions for Correspondence Analysis
Classification Accuracy and Consistency under Item Response
Theory
Conditional Density Estimation Network Construction and
Evaluation
This package performs the CADF unit root test proposed in Hansen
(1995)
Conditional Akaike information criterion for lme4
R graphics device using cairo graphics library for creating
high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG,
PostScript) and display (X11 and Win32) output
Calculations for All Common Subsequences
Multiple imputation using MICE and Random Forest
Automated Parameter Estimation for Complex (Ecological) Models
Calibration of Scatterplot and Biplot Axes
Bayesian calibration of complex computer codes
Improved Allele-Specific Copy Number of SNP Microarrays for
Downstream Segmentation
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
Camera Trap Data Management and Preparation of Occupancy and
Spatial Capture-Recapture Analyses
Estimation of Temporal Ordering of Cancer Abnormalities
Visualizing Generalized Canonical Discriminant and Canonical
Correlation Analysis
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal
and Spatial Clonal Evolutionary History by Next-Generation
Sequencing
Directly Extracts Complete CANSIM Data Tables
Combined Analysis of Pleiotropy and Epistasis
Comparative Analyses of Phylogenetics and Evolution in R
Numbers Figures and Creates Simple Captions
CAlibrating Penalities Using Slope HEuristics
Estimates population size from non-invasive sampling
Spatial Generalised Linear Mixed Models for Areal Unit Data
Data Sets Used in the Vignette Accompanying the CARBayes Package
Spatio-Temporal Generalised Linear Mixed Models for Areal Unit
Data
Estimation of the Number of Fatalities from Carcass Searches
Identification of Cardinal Dates in Ecological Time Series
Cardiovascular Safety Exposure-Response Modeling in Early-Phase
Clinical Studies
High-Dimensional Regression and CAR Score Variable Selection
Statistical package for population size estimation in
capture-recapture models
Estimation of caribou abundance based on large scale
aggregations monitored by radio telemetry
Functions For Statistics Classes At Carleton College
Ecological Quality Ratios Calculation and Plot
A Collection of Database, Data Structure, Visualization, and
Utility Functions for R
CRISPR AnalyzeR for Pooled CRISPR Screens
Reparameterized and marginalized posterior sampling for
conditional autoregressive models, OpenCL implementation
Censored Autoregressive Model with Exogenous Covariates
Séries temporelles avec R - Méthodes et cas
Identify Similar Cases for Qualitative Case Studies
Analysis of categorical-variable datasets with missing values
Categorical Data Analysis Program Package
Fishery Stock Assessment by Generalized Depletion Models
High Dimensional Factor Analysis and Confounder Adjusted Testing
and Estimation
Community Assembly by Traits: Individuals and Beyond
An R Package for Simulating IRT-Based Computerized Adaptive
Tests
Tools: moving window statistics, GIF, Base64, ROC AUC, etc
Procedures to Generate Patterns under Computerized Adaptive
Testing
Special models for categorical variables
Tools for Estimating Causal Dose Response Functions
Deriving Expressions of Joint Interventional Distributions and
Transport Formulas in Causal Models
Methods for Estimating Causal Effects from Observational Data
Estimation of Causal Effects with Generalized Additive Models
Selection Bias Approach to Sensitivity Analysis for Causal
Effects
Analysis utilities for binary classification and Causata users
Statistics Netherlands (CBS) Open Data API Client
Bayesian Canonical Correlation Analysis and Group Factor
Analysis
(Robust) Canonical Correlation Analysis via Projection Pursuit
Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Combined Cluster and Discriminant Analysis
Cox Model for Case-Cohort Data with Stratified
Subcohort-Selection
Convex Clustering Methods and Clustering Indexes
Simulate Congruence Class Model for Networks
Significance Tests for Canonical Correlation Analysis (CCA)
One and two locus GWAS of binary phenotype with
case-control-population design
Cultural Consensus Theory applications to data
Coupled dipole approximation of light scattering by clusters of
nanoparticles
Retrieve U.S. Flu Season Data from the CDC FluView Portal
Conditional Distance Correlation and Its Related Feature
Screening Method
Quantile Regression for Random Variables on the Unit Interval
Coordinate Descent Algorithms for Lasso Penalized L1, L2, and
Logistic Regression
Components of Canadian Monetary and Credit Aggregates
Phylogenetically Classifies Retention Mechanisms of Duplicate
Genes from Gene Expression Data
Constrained Dual Scaling for Detecting Response Styles
Statistical Inference of C- And D-Vine Copulas
Benchmark for the CEC 2005 Special Session on Real-Parameter
Optimization
Benchmark functions for the Special Session and Competition on
Real-Parameter Single Objective Optimization at CEC-2013
Collection of Common Astronomical Conversion Routines and
Functions
Translate Spreadsheet Cell Ranges to Rows and Columns
Functions to fit cell volume distributions and thereby estimate
cell growth rates and division times
Censored Linear Mixture Regression Models
Fits Normal and Student-t Censored Regression Model
Cross-Entropy R Package for Optimization
Discriminant Analysis of Time Series in the Presence of
Within-Group Spectral Variability
Context Driven Exploratory Projection Pursuit
Outlier detection using the iterated RMCD method of Cerioli
(2010)
Covariance Estimation Regularized by Nuclear Norm Penalties
Cause-Specific Framework for Competing-Risk Analysis
Estimate quantiles using any order Cornish-Fisher expansion
Canadian Forest Fire Danger Rating System
Compare Groups, Analytically and Graphically
Calculate AUC-type measure when gold standard is continuous and
the corresponding optimal linear combination of variables with
respect to it
R-Based API for Accessing the MSKCC Cancer Genomics Data Server
(CGDS)
Microarray CGH analysis using the Smith-Waterman algorithm
Detecting hot spot on CGH array data with fused lasso
regression
Segmentation Methods for Array CGH Analysis
Statistical Methods and Models for Claims Reserving in General
Insurance
Markov Model for the Online Multi-Channel Attribution Problem
Shiny Web Application for the Multichannel Attribution Problem
Charge Transfer Rates and Charge Carrier Mobilities
Install Packages from Snapshots on the Checkpoint Server for
Reproducibility
Analysis and Visualisation of Ecological Communities
Calibration Functions for Analytical Chemistry
Multivariate Statistical Analysis in Chemometrics
Chemometrics with R - Multivariate Data Analysis in the Natural
Sciences and Life Sciences
Multiple Testing Methods for Exploratory Research
Calculation of standard deviation scores adduced from different
growth standards
Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Toolkit of Helper Functions to Pre-Process Amplification Data
Chemical Thermodynamics and Activity Diagrams
Simplify the Creation of Choropleth Maps in R
Contains an Administrative-Level-1 Map of the World
Contains maps used by the choroplethr package
Interface to Chromosome Counts Database API
Analysis of chromosomal interactions data (correction,
segmentation and comparison)
Chronological Objects which can Handle Dates and Times
Chunkwise Text-File Processing for 'dplyr'
Generative Models for Complex Networks with Conditionally
Independent Dyadic Structure
Weighted summary of cumulative incidence functions
Co-Information based N-Order Epistasis Detector and Visualizer
CircNNTSR: An R package for the statistical analysis of circular
data using nonnegative trigonometric sums (NNTS) models
Detection of Outliers in Circular-Circular Regression
Circular Statistics, from "Topics in circular Statistics" (2001)
CIT Breast Cancer Molecular SubTypes Prediction
CIT Colon Cancer Molecular SubTypes Prediction
Visualization of structure and contents of a database
Client for the Comprehensive Knowledge Archive Network ('CKAN')
'API'
Optimal k-Means Clustering for One-Dimensional Data
C++ implementations of phylogenetic cladogenesis calculations
Time Series Modeling for Climate Change Proxies
Construct Graphs of S4 Class Hierarchies
Explore classification models in high dimensions
Classification Accuracy and Consistency under IRT models
Robust multivariate classification using highly optimised SVM
ensembles
Cleaning Geometries from Spatial Objects
Simultaneous Variables Clustering and Regression
Model-Based Clustering of Categorical Sequences
Analyzes Clickstreams Based on Markov Chains
Easily Download and Visualise Climate Data from CliFlo
Climate Classification According to Several Indices
Constrained L1-minimization for Inverse (covariance) Matrix
Estimation
Statistical Methods for Climate Sciences
Clinical Trial Design and Data Analysis Functions
Read and Write from the System Clipboard
Constrained Inference for Linear Mixed Effects Models
Fitting exact conditional logistic regression with lasso and
elastic net penalties
Central Limit Theorem Experiments (Theoretical and Simulation)
Clustering Method Based on Local Shrinking
Clustering and Visualization of Mixed-Type Data
Wilcoxon Rank Sum Test for Clustered Data
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Explore clustering interactively using R and GGobi
Random Cluster Generation (with Specified Degree of Separation)
Identifying clusters in genomics data by recursive partitioning
Optimal Distance-Based Clustering for Multidimensional Data with
Sequential Constraint
Power calculations for cluster-randomized and cluster-randomized
crossover trials
Reproducibility of gene expression clusters
Calculate Cluster-Robust p-Values and Confidence Intervals
Searching for Optimal Clustering Procedure for a Data Set
Assessment of Stability of Individual Objects or Clusters in
Partitioning Solutions
Clustering of Observations with Geographical Constraints
k-Prototypes Clustering for Mixed Variable-Type Data
Variable Selection in Clustering by Mixture Models for Discrete
Data
Methods for joint dimension reduction and clustering
Clustering of Variables Around Latent Variables
Variable Selection for Model-Based Clustering
Covariance Matrix Adapting Evolutionary Strategy
Covariance Matrix Adaptation Evolution Strategy
Computational Methods for Numerical Analysis
Control Charts for Conway-Maxwell-Poisson Distribution
Subdistribution Analysis of Competing Risks
Analysis of Competing Risks Using Quantile Regressions
Misc Functions of the Center for the Mathematical Research
The Complex Multivariate Gaussian Distribution
A Package for Coincidence Analysis (CNA)
Canonical Non-Symmetrical Correspondence Analysis in R
Maximum Likelihood Estimation of a Log-Concave Density Function
Pre-process DNA Copy Number (CN) Data for Detection of CN Events
Association Analysis of CNV Data and Imputed SNPs
Example data sets for association analysis of CNV data
A Collection of Functions to Help with Analysis of Coarsely
Observed Data
COnstrained B-Splines (Sparse Matrix Based)
Statistical Comparisons of Two or more Alpha Coefficients
Output Analysis and Diagnostics for MCMC
Markov chain Monte Carlo burn-in based on "bridge" statistics
Automated C Code Generation for Use with the 'deSolve' and
'bvpSolve' Packages
Alternative Factor Coding Matrices for Linear Model Formulae
Robust Coefficient Alpha and Omega with Missing and Non-Normal
Data
Species coexistence modeling and analysis
Conditional Inference Procedures in a Permutation Test Framework
Simultaneous Confidence Interval for Multinomial Proportion
Collocation Inference for Dynamic Systems
Auxiliary Package for Package 'CollapsABEL'
Colocalisation tests of two genetic traits
Implementation of Colored Independent Component Analysis and
Spatial Colored Independent Component Analysis
Plot and add custom coloring to Venn diagrams for 2-dimensional,
3-dimensional and 4-dimensional data
Tools for colors in a Hue-Saturation-Value (HSV) color model
Synergy/Antagonism Analyses of Drug Combinations
Construction Methods of some Series of PBIB Designs
Exact Test from the Combinations of Mutually Exclusive
Alterations (CoMEt) Algorithm
Computational Methods for Immune Cell-Type Subsets
Print Nicely Formatted Comments for Use in Script Files
Bindings to the CommonMark Reference Implementation
Extract and plot common trends from a cointegration system.
Calculate P-value for Johansen Statistics
Comparative Phylogeographic Analysis using the Community Tree
Framework
Creates empty plots with compact axis notation
Compare Two Correlated C Indices with Right-censored Survival
Outcome
Interface to Diverse Estimation Methods of Causal Networks
Do a Git Style Diff of the Rows Between Two Dataframes with
Similar Structure
comparison of medical forms in CDISC ODM format
Correct for Verification Bias in Diagnostic Accuracy & Agreement
Multivariate likelihood ratio calculation and evaluation
Event-specific incidence rates for competing risks data
Tools for Retrieval and Storage of Functional Genomics Data
Conway-Maxwell-Poisson GLM and distribution functions
Numerically Evaluate Integrals and Derivatives (also Higher
Order) of Vector- And Complex-Valued Functions
Robust Linear Regression with Compositional Data as Covariates
Regression Estimation Based on the Compound Covariate Method
Under the Cox Proportional Hazard Model
Distribution function of quadratic forms in normal variables
Composite-Likelihood Based Analysis of Random Fields
Optimisation with Continuous Convex Piecewise (Linear and
Quadratic) Functions
Approximate conditional inference for logistic and loglinear
models
Parameter estimation in conditional GEE for recurrent event gap
times
Conditional Density Estimation with Neural Network Conditional
Mixtures
Condition Number Regularized Covariance Estimation
Conditional Visualization for Statistical Models
Primal or Dual Cone Projections with Routines for Constrained
Regression
Confidence Estimation of Environmental State Classifications
Conformal Prediction for Regression and Classification
Configural Frequencies Analysis Using Log-Linear Modeling
Algorithms for Fitting Circles, Ellipses and Conics Based on the
Work by Prof. Nikolai Chernov
A package to check the cancellation axioms of conjoint
measurement
A Tool for Reproducible Research by Converting 'LaTeX' Files
Generated by R Sweave to Rich Text Format Files
Tools for working with connectivity matrices
Conover-Iman Test of Multiple Comparisons Using Rank Sums
Partial Linear Least-Squares Regression using Constrained
Splines
Compute the Median Ranking(s) According to the Kemeny's
Axiomatic Approach
Constrained, Covariance-Matching Constrained and Universal Point
or Block Kriging
Model-Based Clustering and Classification with the Multivariate
Contaminated Normal Distribution
Contouring of Non-Regular Three-Dimensional Data
Median Comparison for Two-Sample Right-Censored Survival Data
Quantifies and assesses the significance of convergent evolution
Probabilistic Species Co-Occurrence Analysis in R
Co-Operation: Fast Covariance, Correlation, and Cosine
Similarity Operations
Cooperative aspects of optimal trees in weighted graphs
General Bivariate Copula Theory and Many Utility Functions
Fitting the copCAR Regression Model for Discrete Areal Data
Coverage Probability Excursion (CoPE) Sets
Copula Based Bivariate Beta-Binomial Model for Diagnostic Test
Accuracy Studies
Estimation of Distribution Algorithms Based on Copulas
Estimation and Statistical Process Control Under Copula-Based
Time Series Models
Bivariate Copula Based Regression Models
Copula Mixed Effect Models for Bivariate and Trivariate
Meta-Analysis of Diagnostic Test Accuracy Studies
Computing Statistical Indices to Detect Answer Copying on
Multiple-Choice Tests
Baseline Correction for Copy Number Data from Cancer Samples
Generate correlated count random variables
Community Estimation in G-Models via CORD
Classification, Regression and Feature Evaluation
TDT for compound heterozygous and recessive models
The Clustering of Regression Models Method
Efficient Estimation of Covariance and (Partial) Correlation
Statistics and data sets for corpus frequency data
Nonparametrics with Clustered Binary and Multinomial Data
Linear Regression Based on Linear Structure Between Covariates
Functions and Methods for Correspondence Regression
A collection of functions for graphing correlation matrices
Estimate Correlations Between Repeatedly Measured Endpoints
(E.g., Reliability) Based on Linear Mixed-Effects Models
Tools for processing data after a Genome Wide Association Study
Tools for estimating and predicting the cosinor model
Functions for cosmological distances, times, luminosities, etc
Photometric redshift estimation using generalized linear models
Fit Regularized Nonparametric Regression Models Using COSSO
Penalty
Flexible Univariate and Bivariate Count Process Probability
Mean and Variance Modeling of Count Data
A Residue-Residue Contact Detecting Method
Local Polynomial Regression of State Dependent Covariates in
State-Space Models
Brownian Motion Processes for 'nlme'-Models
Latent Class Models with Covariate Effects on Underlying and
Measured Variables
A simultaneous regression model for the mean and covariance
Robust Covariance Estimation via Nearest Neighbor Cleaning
Tests for Determining if the Covariance Structure of
2-Dimensional Data is Separable
Computes covariance test for adaptive linear modelling
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Messages, Warnings, Strings with Ascii Animals
Cox models by likelihood based boosting for a single survival
endpoint or competing risks
Cox-Type Models for Interval-Censored Data
Cox Regression (Proportional Hazards Model) with Multiple Causes
and Mixed Effects
Confirmatory Path Analysis through the d-sep tests
Methods to perform Common Principal Component Analysis (CPCA)
Concordance Probability Estimates in Survival Analysis
Association Between Methylation and a Phenotype of Interest
Parallelized Genomic Prediction and GWAS
CpG Filtering Method Based on Intra-class Correlation
Coefficients
Find the maximum likelihood estimator of the shape constrained
hazard baseline and the effect parameters in the Cox
proportional hazards model
Sequential and Batch Change Detection Using Parametric and
Nonparametric Methods
Correction of the pvalue after multiple coding
Conditional probability function of a competing event
Quantile, Composite Quantile Regression and Regularized Versions
Conditional Maximum Likelihood for Quadratic Exponential Models
for Binary Panel Data
Power Calculation for Weighted Log-Rank Tests in Cure Rate
Models
Probabilistic damage tolerance analysis for fatigue cracking of
metallic aerospace structures
Multivariate nonparametric Cramer-Test for the
two-sample-problem
Download Logs from the 'RStudio' 'CRAN' Mirror
Fit Continuous-Time Correlated Random Walk Models to Animal
Movement Data
Categorical Randomized Block Data Analysis
Censored Regression with Conditional Heteroscedasticity
Functions for calculating the CreditMetrics risk model
Analyze Cricketers Based on ESPN Cricinfo Statsguru
Group-Based Modelling of Longitudinal Data
Statistical Methods for Crime Series Linkage
Continual Reassessment Method (CRM) for Phase I Clinical Trials
CCMN and other noRMalizatioN methods for metabolomics data
Object-Oriented Implementation of CRM Designs
Downloads and Builds datasets for Climate Reference Network
A Partial Clustering Algorithm with Automatic Estimation of the
Number of Clusters and Identification of Outliers
Analysis and Search of Crossover Designs
Confidence intervals for crossover points of two simple
regression lines
Cross-Recurrence Quantification Analysis for Categorical and
Continuous Time-Series
Penalized Variable Selection in Competing Risks Regression
Competing risks regression for Stratified and Clustered data
Stepwise Covariate Selection for the Fine & Gray Competing Risks
Regression Model
Nonlinear Regression Parameters Estimation by 'CRS4HC' and
'CRS4HCe'
Doubly Robust Inverse Probability Weighted Augmented GEE
Estimator
Sample Size Estimation Functions for Cluster Randomized Trials
Interface to Climatic Research Unit Time-Series Version 3.21
Data
Identifying cryptic relatedness in genetic association studies
Statistical Tests for Cryptographic Randomness
Functions for Conditional Simulation in Regression-Scale Models
Covariate-adjusted Skewed Functional Model (cSFM)
Methods to Test Hypotheses on the Distribution of Spatial Point
Processes
csSAM - cell-specific Significance Analysis of Microarrays
Substantive significance testing for regression estimates and
marginal effects
Modeling Animal Movement with Continuous-Time Discrete-Space
Markov Chains
Continuous Time Structural Equation Modelling
A Class of Mixture Models for Ordinal Data
Rule- and Instance-Based Regression Modeling
CUDA Parallel Implementation of a Bayesian Multilevel Model for
fMRI Data Analysis
Data sets for the examples used in the package "cudaBayesreg"
Charles's Utility Function using Formula
Analyze Multivariate Phenotypes by Combining Univariate results
Extends ddply to allow calculation of cumulative quantities
Change point detection in genomic sequences
Tools to Transform 'cURL' Command-Line Calls to 'httr' Requests
The package will formally test two curves represented by
discrete data sets to be statistically equal or not when the
errors of the two curves were assumed either equal or not using
the tube formula to calculate the tail probabilities
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
Customized Training for Lasso and Elastic-Net Regularized
Generalized Linear Models
Compute Decision Interval and Average Run Length for CUSUM
Charts
CUTOFF: A Spatio-temporal Imputation Method
An R package to perform LPUE standardization and stock
assessment of the English Channel cuttlefish stock using a
two-stage biomass model
Cross-Validated Area Under the ROC Curve Confidence Intervals
Estimation of the Calibration Equation with Error-in
Observations
Penalized Logistic Regression Model using Majorization
Minimization by Coordinate Descent (MMCD) Algorithm
Calculate the predictive squared correlation coefficient
Fast Cross-Validation via Sequential Testing
Cross-validation tools for regression models
Regularized Estimators of Covariance Matrices with CV Tuning
Miscellaneous Functions for Math, Plotting, Printing,
Statistics, Strings, and Tools
extend cxxfunction by saving the dynamic shared objects
Query 'Team Cymru' 'IP' Address, Autonomous System Number
('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware'
Hash Data Services
Cycle and Phase Identification for mastication data
Predicting Causal Direction from Dependency Features
Interactive Heat Maps Using 'htmlwidgets' and 'D3.js'
Tools for creating D3 JavaScript network, tree, dendrogram, and
Sankey graphs from R
Data Analysis and Graphics Data and Functions
Data Sets and Functions, for demonstrations with expression
arrays and gene sequences
Data Sets and Functions, supplementary to DAAG
Three-Way Data Analysis Through Densities
Functions Useful in the Design and ANOVA of Experiments
Design and Analysis of Experiments with R
Learning directed acyclic graphs (DAGs) through bootstrap
aggregating
Graphical Analysis of Structural Causal Models
Diagnostic accuracy of classification models
Dynamical Assembly of Islands by Speciation, Immigration and
Extinction
DALY Calculator - A GUI for stochastic DALY calculation in R
Dynamic Assembly Model of Colonization, Local Extinction and
Speciation
Dams in the United States from the National Inventory of Dams
(NID)
Dandelion Plot for R-Mode Exploratory Factor Analysis
Package for Deep Architectures and Restricted Boltzmann Machines
Statistical Tools to Analyze Your Darts Game
Interactive Data Visualization with D3.js
File-Based Access to Large Matrices Stored on HDD in Binary
Format
Tools for Easily Combining and Cleaning Data Sets
Divide and Recombine for Large, Complex Data
dataframes2xls writes data frames to xls files
Estimating Finite State Machine Models from Data
A system for mapping foreign objects to R variables and
environments
Easily Source Publicly Available Data on Derivatives
A Flexible Container to Transport and Manipulate Data and
Associated Resources
Performs variable level data quality checks and generates
summary statistics
Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
An Implementation of a SAS-Style Data Step
General Purpose Hierarchical Data Structure
Support functions for packages VBmix, semisupKernelPCA, and
patchPlot
Data and Workspace Browser for Terminals
Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
Functions for "Data Analysis in Vegetation Ecology"
Discriminant Analysis with Additional Information
Discrete Bayesian Additive Regression Trees Sampler
Provides a graphical user interface to connect with databases
that use MySQL
Goodness-of-fit and two sample comparison tests using sample
entropy
methods of distance-based gene set functional enrichment
analysis
Discrete Beta Kernel Graduation of Mortality Data
Compute the NPMLE of distribution from doubly censored data
Distance-Based Measures of Spatial Structures
Density Based Clustering of Applications with Noise (DBSCAN) and
Related Algorithms
Analyzing Dichotomous Choice Contingent Valuation Data
A Package for Image Analysis of DCE-MRI (S4 Implementation)
Differential Co-expression Analysis and Differential Regulation
Analysis of Gene Expression Microarray Data
Analysis of Ontologies and Protein Domain Annotations
Claims Reserving under the Double Chain Ladder Model
Data Cloning and MCMC Tools for Maximum Likelihood Methods
Functions for the Detection of Spatial Clusters of Diseases
Hierarchical Models Made Easy with Data Cloning
Attribute profile estimation using Diagnostic Classification
Models and MCMC
List Linear n-Peptide Constraints for Overlapping Protein
Regions
Distance Covariance and Correlation for Time Series Analysis
Conventional Cross-validation statistics for climate-growth
model
Depth-Based Classification and Calculation of Data Depth
Variance Stabilization by Data-Driven Haar-Fisz (for
Microarrays)
Analysis and Visualization of Droplet Digital PCR in R and on
the Web
Learning Bayesian Networks with Mixed Variables
Deconvolution density estimation with adaptive methods for a
variable prone to measurement error
DEComposition of Indirect and Direct Effects
Quantitative Support of Decision Making under Uncertainty
Differential Co-Expression and Differential Expression Analysis
Deconvolution Estimation in Measurement Error Models
Identifies Signatures Present in a Tumor Sample
Additional dialogs and functions for Deducer
Deductive Correction, Deductive Imputation, and Deterministic
Correction
Data Correction and Imputation Using Deductive Methods
Dirichlet-multinomial Evolutionary Event Profile Randomization
(DEEPR) test
Integration of One-Dimensional Functions with Double Exponential
Formulas
Detection of differentially expressed genes
Models for Skewed Count Distributions Relevant to Networks
Statistical Functions for the Delaporte Distribution
Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Estimation of Multivariate Densities Using Adaptive Partitions
Identification of dichotomous differential item functioning
(DIF) using Angoff's Delta Plot method
Functions to calculate relatedness on diploid genetic data
Evaluating the genetic differentiation between populations based
on Gst and D values
Differential Expression from Multiple Indicators
Deming, Thiel-Sen and Passing-Bablock Regression
Forecasting mortality, fertility, migration and population data
Kernel Density Estimation for Demonstration Purposes
DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using
Test Set
Faster Dendrogram Manipulation using 'Rcpp'
Extra functions to cut, label and colour dendrogram clusters
Dendrogram seriation: ordering for visualisation
Modular Leaf Ordering Methods for Dendrogram Nodes
Statistical Analyses of De Novo Genetic Variants
Visualization of Multivariate Functions, Sets, and Data
Clustering by Fast Search and Find of Density Peaks
Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for
density estimation
Dens-Based Method for Partial Correlation Estimation in Large
Scale Brain Networks
Density strips and other methods for compactly illustrating
distributions
Global Optimization by Differential Evolution
Differential Evolution Optimization in Pure R
Statistical Inference for Parametric and Semiparametric Models
Based on Dependently Truncated Data
Dependent Mixture Models - Hidden Markov Models of GLMs and
Other Distributions in S4
Depth functions tools for multivariate analysis
Statistical Depth Functions for Multivariate Analysis
Seasonal Adjustment by Frequency Analysis
An Interface to the DescribeDisplay GGobi Plugin
Describe Data in R Using Common Descriptive Statistics
Optimal deseasonalization for geophysical time series using AR
fitting
Computational tool for designing genetical genomics experiments
Finding Optimal Block Designs for a Generalised Linear Mixed
Model
Construction of Optimally Matched Samples for Randomized
Experiments and Observational Studies that are Balanced by
Design
Desirability Functions for Ranking, Selecting, and Integrating
Data
Desirability Function Optimization and Ranking
Bagging with Distance-based Regression for Differential Gene
Expression Analyses
Solvers for Initial Value Problems of Differential Equations
(ODE, DAE, DDE)
Estimation of Diagonal Elements of Sparse Precision-Matrices
Plotting Field Plans for Agricultural Experiments
Analyzing Wildlife Data with Detection Error
Detect Data Containing Personally Identifiable Information
Implementation of the DetMCD Algorithm (Robust and Deterministic
Estimation of Location and Scatter)
Suite of Deterministic and Robust Algorithms for Linear
Regression
Start the detrendeR Graphical User Interface (GUI)
A computer program to detect markers responding to selection
Data sets from Devore's "Prob and Stat for Eng (7th ed)"
Tools to Make Developing R Packages Easier
Phase I/II Adaptive Dose-Finding Design for Combination Studies
Dose-finding by the continual reassessment method
Explore data.frames by plotting NA and classes of each variable
Differential Functioning of Items and Tests
Phase I/II Adaptive Dose-Finding Design for MTA
Capture-Recapture Estimation using Bayesian Model Averaging
Differential Geometric LARS (dgLARS) method
Simulating Data for PLS Mode B Structural Models
Double Hierarchical Generalized Linear Models
Independence Testing via Hilbert Schmidt Independence Criterion
Block Diagonal Extraction or Replacement
Functions for visualising simple graphs (networks), plotting
flow diagrams
Create Graph Diagrams and Flowcharts Using R
Export DiagrammeR Graphviz Graphs as SVG
Diagnostic test summary measures for three ordinal groups
Calculate probabilities of various dice-rolling events
Construction and Evaluation of Metamodels
Kriging Methods for Computer Experiments
Kriging-Based Optimization for Computer Experiments
Plot methods for computer experiments design and surrogate
Dictionaries for reading microdata surveys from IBGE
Defines some physical constants and dielectric functions
commonly used in optics, plasmonics
R Interface to the ZEIT ONLINE Content API
Detection of Differential Item Functioning (DIF) in Rasch Models
by Boosting Techniques
Analyzing and Visualizing Differential Correlation Networks in
Biological Data
Calculates Confidence Intervals for two Dependent Proportions
Functions from the book Solving Differential Equations in R
Metrics of Difference for Comparing Pairs of Maps
Diffusion IRT Models for Response and Response Time Data
Display Differences Between Two Files using Codediff Library
Baseline identification and peak decomposition for x-ray
diffractograms
Inference and Analysis for Generalized Quadratic Diffusions
Inference and Analysis for Jump Generalized Quadratic Diffusions
A penalty approach to Differential Item Functioning in Rasch
Models
Collection of Methods to Detect Dichotomous Differential Item
Functioning (DIF)
Item Focused Trees for the Identification of Items in
Differential Item Functioning
Create Compact Hash Digests of R Objects
An application programming interface for generating null models
of social contacts based on individuals' space use
Data-Informed Link Strength. Combine multiple-relationship
networks into a single weighted network. Impute (fill-in)
missing network links
DIME (Differential Identification using Mixture Ensemble)
DiNAMIC A Method To Analyze Recurrent DNA Copy Number
Aberrations in Tumors
Hartigan's Dip Test Statistic for Unimodality - Corrected
Bayesian Clustering of Multivariate Data Under the
Dirichlet-Process Prior
Direction Analysis for Pathways and Kinases
Discrete Laplace Mixture Inference using the EM Algorithm
DiscML: An R package for estimating evolutionary rates of
discrete characters using maximum likelihood
Multiple testing procedures for discrete test statistics
Create and Manipulate Discrete Random Variables
Discrete Weibull Distributions (Type 1 and 3)
Data preprocessing, discretization for classification
Discrimination of Alternative Reproductive Tactics (ARTs)
Tools of the Trade for Discriminant Analysis
Modelling Spatial Variation in Disease Risk for Areal Data
Calculate Dissimilarity Matrix for Dataset with Mixed Attributes
A Pipeline to Analyze Resistance and Tolerance from Drug Disk
Diffusion Assays
2D Hausdorff and Simplex Dispersion Orderings
Disparity Filter Algorithm of Weighted Network
Create Disposable R Packages for Testing
Utilities for making pairwise comparisons of multivariate data
Distance Sampling Detection Function and Abundance Estimation
Calculates Study Size Required for Distance Sampling
DiSTATIS Three Way Metric Multidimensional Scaling
Computations over Distributed Data without Aggregation
Method Functions for Confidence Intervals and to Distill
Information from an Object
Object oriented implementation of distributions
Documentation for Packages distr, distrEx, distrSim, distrTEst,
distrTeach, distrMod, and distrEllipse
S4 classes for elliptically contoured distributions
Object Oriented Implementation of Probability Models
Package distr classes for distributions from Rmetrics
Simulation classes based on package distr
Extensions of package distr for teaching Stochastics/Statistics
in secondary school
Estimation and Testing classes based on package distr
Provides tools for quality checks of georeferenced plant species
accessions
Comparative Phylogenetic Analyses of Diversification
A Comprehensive, General Purpose Population Genetics Analysis
Package
Building Diversity Models from Multiple Species Occupancy Models
Functions for re-sampling a community matrix to compute
diversity indices at different sampling levels
Tools for Analysis of Diversity and Similarity in Biological
Systems
Nearest Neighbour Contingency Table Analysis
Distance Measure Based Judgment and Learning
Bayesian and Likelihood Analysis of Dynamic Linear Models
Dynamic Modeling and Parameter Estimation in ODE Models
Delete or Merge Regressors for linear model selection
Functions and data for "Data Mining with R"
Tools for analysing forensic genetic DNA data
Integrative Analysis of Omics Data in Terms of Network,
Evolution and Ontology
Analysis of Discretely Observed Linear
Birth-and-Death(-and-Immigration) Markov Chains
Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
Extract Data Tables from Microsoft Word Documents
Functions for Acceptance Sampling Ideas originated by H.F. Dodge
Full Factorials, Orthogonal Arrays and Base Utilities for DoE
Packages
Wrapper package for design of experiments functionality
ADI (average dominance index), social network graphs with dual
directions, and music notation graph
R Console Bindings for the 'Domino Command-Line Client'
Foreach parallel adaptor for the Rmpi package
Foreach Parallel Adaptor for the 'parallel' Package
Foreach parallel adapter for the rredis package
Generic Reproducible Parallel Backend for foreach Loops
Planning and Analyzing Dose Finding Experiments
Foreach Parallel Adaptor for the 'snow' Package
Dot-and-Whisker Plots of Regression Results
Test against parametric regression function
Differential Exon Usage Test for RNA-Seq Data via Empirical
Bayes Shrinkage of the Dispersion Parameter
Local Linear Hazard Estimation with Do-Validated and
Cross-Validated Bandwidths
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's
Book Measuring Market Risk
Dirichlet Process Mixture model simulation for clustering and
image segmentation
Data Pre-Processing and Visualization Functions for
Classification
Methods for Dimension Reduction for Regression
Doubly Robust Generalized Estimating Equations
Discontinuous Regression and Image Processing
Regression and association models for repeated categorical data
Dual Empirical Likelihood Inference under Density Ratio Models
in the Presence of Multiple Samples
Analyze Drop Out of an Experiment or Survey
Dose-Response Modeling with Smoothing Splines
Implementation of a Machine Learning Framework for Predicting
Drugs Side Effects
Discretization-Based Direct Random Sample Generation
Bayesian subgroup analysis in clinical trials
Dynamic Systems Estimation (Time Series Package)
Density Surface Modelling of Distance Sampling Data
Spatial Modelling for Distance Sampling Data
Recursive Partitioning for Discrete-Time Survival Trees
Exploring Disease Similarity in Terms of Dysfunctional
Regulatory Mechanisms
A Wrapper of the JavaScript Library 'DataTables'
Comparison of Binary Diagnostic Tests in a Paired Study Design
Analysis of Diffusion Weighted Imaging (DWI) Data
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted
for Unequal Variances and Unequal Sample Sizes
Suite of functions related to discrete-time discrete-state
Markov Chains
Estimation and Comparison of Dynamic Treatment Regimes
Learning Algorithms for Dynamic Treatment Regimes
DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and
Q-Learning
Time Series Clustering Along with Optimizations for the Dynamic
Time Warping Distance
Time-Weighted Dynamic Time Warping for Remote Sensing Time
Series Analysis
Dual Scaling Analysis of Multiple Choice Data
Create dummy/indicator variables flexibly and efficiently
Automatic Creation of Dummies with Support for Predictive
Modeling
Software implementation of step-down and step-up Dunnett test
procedures
Dunn's Test of Multiple Comparisons Using Rank Sums
Bayesian inference from count data using discrete uniform priors
Discrete variations of a fractional Brownian motion
Analyze Dose-Volume Histograms and Check Constraints
Parametric Regression for Discrete Response
Interface to 'Dygraphs' Interactive Time Series Charting Library
Dynamically visualized probability distributions and their
moments
Methods for Detection of Clusters in Hierarchical Clustering
Dendrograms
Implementation of the Dynamic TOPMODEL Hydrological Model
Full Interactive GUI for Dynamic Biplot in R
Denoising and clustering for dynamical image sequence (2D or
3D)+T
Dynamic Nomograms for Linear, Generalized Linear and
Proportional Hazard Models
Companion Package to "Dynamic Prediction in Clinical Survival
Analysis"
Dynamic Simulations of Autoregressive Relationships
Methods for Estimating Dynamic Treatment Regimes
Misc Functions of the Department of Statistics, Probability
Theory Group (Formerly: E1071), TU Wien
Plots of the Empirical Attainment Function
Early Warning Signals Toolbox for Detecting Critical Transitions
in Timeseries
Efficient Approximate Bayesian Computation Sampling Schemes
Analysis of variance and other important complementary analyzes
Utility functions for working with mark-recapture data
Sample Size Estimation for Experimental Designs
Search and Retrieve Scientific Publication Records from Pubmed
Evaluation of stratified genome-wide association meta-analysis
results
Ensemble Forecast Verification for Large Data Sets
Entropy reweighting to create balanced samples
Empirical Bayes Thresholding and Related Methods
Empirical Bayes Estimation of Dynamic Bayesian Networks
Genotyping using Next Generation Sequencing Data
Empirical Bayesian Lasso and Elastic Net Methods for Generalized
Linear Models
Genotyping and SNP calling using single-sample next generation
sequencing data
Programmatic Access to the European Central Bank's Statistical
Data Warehouse (SDW)
Simulation from Endpoint-Conditioned Continuous Time Markov
Chains
Elliptic Distribution Based on Elliptic Curves
Functions for Spatial Point Pattern Analysis
Efficient calculation of fine structure isotope patterns via
Fourier transforms of simplex-based elemental models
Dissimilarity-based functions for ecological analysis
Programmatic Interface to the API Serving UC Berkeley's Natural
History Data
Spatial Analysis of Phenotypic, Genotypic and Environmental Data
A community modeling foundation for Eco-Hydrology
"A practical guide to ecological modelling - using R as a
simulation platform"
Ecological Regression using Aggregate and Individual Data
Simulating Community Assembly and Ecological Diversification
Using Ecospace Frameworks
Procedures for Ecological Assessment of Surface Waters
Non-Parametric Multiple Change-Point Analysis of Multivariate
Data
Exploratory and Descriptive Event-Based Data Analysis
More Powerful Unconditional Testing of Negative Binomial Means
for Digital Gene Expression Data
Network Reconstruction and Changepoint Detection
Simultaneous Edit-Imputation for Continuous Microdata
Parsing, Applying, and Manipulating Data Cleaning Rules
Empirical Differentially Methylated Regions Calculation
Estimation of the effective dimension reduction (EDR) space
Provides tools for dimension reduction methods
Tools for analysis and classification of electroencephalography
(EEG) data
Read and Preprocess Fluorescence Excitation-Emission Matrix
(EEM) Data
Tools for Pre-Processing Emission-Excitation-Matrix (EEM)
Fluorescence Data
Convenience Functions for Education Data
Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images
Effect Displays for Linear, Generalized Linear, and Other Models
Test changes of a grouped response relative to baseline
Visualization of Categorical Response Models
The Causal Effects for a Causal Loglinear Model
Hierarchical Modelling of Faecal Egg Counts
Tool for ego-centric measures in Social Network Analysis
Exploration and Graphics for RivEr Trends (EGRET)
Exploration and Graphics for RivEr Trends (EGRET) Confidence
Intervals
R Wrapper for the Energy Information Administration (EIA) API
Generates (dense) matrices that have a given set of eigenvalues
Semiparametric factor and regression models for symmetric
relational data
Computes confidence intervals for principal components
eiPack: Ecological Inference and Higher-Dimension Data
Management
An algorithm for reducing errors-in-variable bias in simple
linear regression
Ecological Inference with individual and aggregate data
Enhanced Least Absolute Shrinkage and Selection Operator
Regression Model
General Purpose Interface to 'Elasticsearch'
Elastic-Net for Sparse Estimation and Sparse PCA
Collection of functions for statistical election audits
Functions for election audits using stratified random samples
Data Sets, Functions and Examples from the Book: "The Elements
of Statistical Learning, Data Mining, Inference, and
Prediction" by Trevor Hastie, Robert Tibshirani and Jerome
Friedman
Load Associated Press Election Results with Elex
Functions for drawing ellipses and ellipse-like confidence
regions
Implementation of ELM (Extreme Learning Machine ) algorithm for
SLFN ( Single Hidden Layer Feedforward Neural Networks )
Preference Rating for Visual Stimuli Based on Elo Ratings
Animal Dominance Hierarchies by Elo Rating
Empirical Likelihood Analysis for the Cox Model and
Yang-Prentice (2005) Model
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Evolutionary Monte Carlo (EMC) algorithm
EM Algorithm for Model-Based Clustering of Finite Mixture
Gaussian Distribution
Empirical Mode Decomposition and Hilbert Spectral Analysis
Support Functions and Data for "Ecological Models and Data"
Exponentially Modified Gaussian (EMG) Distribution
Evaluation of Modeling without Information Leakage
EM Algorithms for Estimating Item Response Theory Models
Contrasts in mixed effects for EMMIX model with random effects
The EM Algorithm and Skew Mixture Distribution
Fitting Unrestricted Multivariate Skew t Mixture Models
Fitting Mixed Models with Known Covariance Structures
Eye Movement Analysis Package for Fixation and Saccade Detection
Expected Maximum Profit Classification Performance Measure
Routines for Performing Empirical Calibration of Observational
Study Estimates
Simulation-Based False Discovery Rate in RNA-Seq
Empirical Likelihood Ratio for Censored/Truncated Data
Empirical Likelihood Ratio Test for Two Samples with Censored
Data
Exact Multinomial Test: Goodness-of-Fit Test for Discrete
Multivariate data
Main Package of the EMU Speech Database Management System
Entropy Minimization over Variable Clusters (EMVC)
R Package for Fitting Multinomial Probit Models with Endogenous
Selection
R Package for Analyzing Endorsement Experiments
Data sets from "Introductory Statistics for Engineering
Experimentation"
Automated Runs and Evaluations of Ecological Niche Models
Ensemble Partial Least Squares Regression
An R Package for the Analysis of Multiple ChIP-Seq Data
Enrichment assessment of virtual screening approaches
Extensible Package for Parallel, Batch Training of Base Learners
for Ensemble Modeling
Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Extensible Package for Cross-Validation-Based Integration of
Base Learners
Extensible Package for Principal-Component-Regression-Based
Integration of Base Learners
Extensible Classes and Methods for Penalized-Regression-based
Integration of Base Learners
Entropy Partitioning to Measure Diversity
Estimation of Entropy, Mutual Information and Related Quantities
Estimation of Entropy and Related Quantities
Tools for Exploring Differential Shannon Entropy, Differential
Coefficient of Variation and Differential Expression
Isotope Pattern, Profile and Centroid Calculation for Mass
Spectrometry
Peak Picking for High Resolution Mass Spectrometry Data
Statistical Analysis of Environmental Space-Time Processes
Package for Environmental Statistics, Including US EPA Guidance
Statistical Functions for the Censored and Uncensored
Epanechnikov Distribution
Gaussian Approximation of Bayesian Binary Regression Models
A Package for Statistical Analysis in Epidemiology
Elementary Epidemiological Functions for Epidemiology and
Biostatistics
Implements Hierarchical Bayesian Models for Epidemiological
Applications
Epidemiological Tool for Contact Tracing
EpiEstim: a package to estimate time varying reproduction
numbers from epidemic curves
Flexible Modelling Functions for Epidemiological Data Analysis
Mathematical Modeling of Infectious Disease
Tools for the Analysis of Epidemiological Data
Basic Sensitivity Analysis of Epidemiological Results
Density Estimation with Soft Information by Exponential
Epi-splines
EPoC (Endogenous Perturbation analysis of Cancer)
EQS Output Conversion to lavaan Functions
Tools for analyzing eQTL experiments: A complementary to Karl
Broman's 'qtl' package for genome-wide analysis
Direct, Chain and Average Equating Coefficients with Standard
Errors Using IRT Methods
Provides Tests and Graphics for Assessing Tests of Equivalence
Nonparametric Multiple Expectile Regression via ER-Boost
Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Fit, Simulate and Diagnose Exponential-Family Models for
Networks with Count Edges
Fit, Simulate and Diagnose Exponential-Family Random Graph
Models to Egocentrically Sampled Network Data
ERG Modeling Based on Graphlet Properties
Local Health Department network data set
Fit, Simulate and Diagnose Exponential-Family Models for
Rank-Order Relational Data
User-specified terms for the statnet suite of packages
Significance Analysis of Event-Related Potentials Data
Event-Related Potential (ERP) Data Exploration Made Easy
Event-related potentials (ERP) analysis, graphics and utility
functions
Estimate Number of Latent Factors and Factor Matrix for Factor
Analysis
ESEA: Discovering the Dysregulated Pathways based on Edge Set
Enrichment Analysis
Toolkit for the simulation of financial assets and interest
rates models
Ensemble of Subset of K-Nearest Neighbours Classifiers for
Classification and Class Membership Probability Estimation
Calibrating Parameters for the Samejima's Continuous IRT Model
Estimation of Heritability in High Dimensional Sparse Linear
Mixed Models using Variable Selection
Tools for Assessing Estimability of Linear Predictions
Modeling Earthquake Data Using ETAS Model
Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
Utility Functions to Execute Standard Extract/Transform/Load
Operations (using Package 'ff') on Large Data
eulerian: A package to find eulerian paths from graphs
Bayesian Single Arm Sample Size Calculation Software
Extreme Value Analysis with Goodness-of-Fit Testing
Parsing and Evaluation Tools that Provide More Details than the
Default
Modelling Actual, Potential and Reference Crop
Evapotranspiration
Functions for Extreme Value Distributions
Bayesian Analysis in Extreme Value Theory
A Powerful Tool to Quickly Compare Huge Lists and Draw Venn
Diagrams
Extreme Value Mixture Modelling, Threshold Estimation and
Boundary Corrected Kernel Density Estimation
Comparative and Population Genetic Analyses
Tools for Evolutionary Quantitative Genetics
Mean of order p, peaks over random threshold Hill and high
quantile estimates
Evolutionary Learning of Globally Optimal Trees
Goodness-of-Fit Tests for the Exponential and Two-Parameter
Weibull Distributions
Exact Conditional Tests and Confidence Intervals for 2x2 tables
Exact P-Values and Matching Confidence Intervals for Simple
Discrete Parametric Cases
Inductive Confidence Intervals for the difference between two
proportions
Monte Carlo Exact Tests for Log-linear models
Exact solution paths for regularized LASSO regressions with L_1
penalty
Exact Distributions for Rank and Permutation Tests
Confidence regions for exceedance sets and contour lines
Convenient Data Exchange with Microsoft Excel
Excursion Sets and Contour Credibility Regions for Random Fields
Calls Copy Number Variants from Targeted Sequence Data
Expanding Ploidy and Allele-Frequency on Nested Subpopulations
Modular Differential Evolution for Experimenting with Operators
experiment: R package for designing and analyzing randomized
experiments
Modeling without data using expert opinion
Explanation of Predictions for Classification and Regression
Models
Interactive Interfaces for Results Exploration
Exploratory analysis with the singular value decomposition
Calculate density dependent likelihood of a phylogenetic tree
Spatial analysis of extra-pair paternity
Data Sets from "Forecasting with Exponential Smoothing"
Fast, Reliable and Elegant Reproducible Research
Convenience Functions for Botanists to Create Specimens Indices
Extending the Range of Functions for Probability Distributions
Maximum penalized likelihood estimation with extended lasso
penalty
Extra-binomial approach for pooled sequencing data
Categorical Data Analysis and Visualization
Extremely Randomized Trees (ExtraTrees) Method for
Classification and Regression
Estimation of Extreme Value Dependence for Time Series Data
Estimate Lower Extreme Quantile with the Censored Weibull MLE
and Censored Weibull Mixture
Easy Analysis and Visualization of Factorial Experiments
Easy Interface to Effective Concentration Calculations
selects significant non-additive interaction between two
variables using fast GLM implementation
Avoid the Typical Working Directory Pain When Using 'knitr'
provide an easy to use framework to conduct simulation
Summarise Data in the Quick and Easy Way
Bayesian Sparse Factor Analysis model for the inference of
pathways responsive to drug treatment
Combination of Factorial Methods and Cluster Analysis
Multivariate Exploratory Data Analysis and Data Mining
Bayesian quantile regression factor models
Perform Factorial Analysis from FactoMineR with a Shiny
Application
Scores the FACT and FACIT Family of Patient-Reported Outcome
Measures
thin wrapper for the Factual.com server API
Variable selection for supervised classification in high
dimension
Distributions that are Sometimes Used in Hydrology
Data from the Book "Multivariate Statistical Modelling Based on
Generalized Linear Models", First Edition, by Ludwig Fahrmeir
and Gerhard Tutz
Faisal Conjoint Model: A New Approach to Conjoint Analysis
Finding Allele-specific Copy Number in Next-Generation
Sequencing Data
Simulation of Time-to-Event Family Data and Penetrance
Estimation
Probabilities for Pedigrees Given DNA Data
A Convex Formulation for Modeling Interactions with Strong
Heredity
Maximum Likelihood and Bayesian Estimation of Univariate
Probability Distributions
Factor Analysis for Multiple Testing (FAMT) : simultaneous tests
under dependence in high-dimensional data
Penalized Likelihood Factor Analysis via Nonconvex Penalty
Building Kriging Models from FANOVA Graphs
Visualisation of Sequential Probability Distributions Using Fan
Charts
Download Data from the FAOSTAT Database of the Food and
Agricultural Organization (FAO) of the United Nations
Influential Case Detection Methods for Factor Analysis and
Structural Equation Models
Modelization for Functional AutoRegressive Processes
Functions and Datasets for Books by Julian Faraway
Rmetrics - Analysing and Modelling Financial Assets
Implementation of the Fourier Amplitude Sensitivity Test (FAST)
Fast Estimation of a Covariance Matrix by Banding the Cholesky
Factor
A Fast Solver for Parameterized Linear Programming Problems and
Constrained L1 Minimization Approach to Sparse Precision Matrix
Estimation
Fast Hierarchical Clustering Routines for R and Python
Lasso and elastic-net penalized Cox's regression in high
dimensions models using the cocktail algorithm
Fast, Low Memory-Footprint Digests of R Objects
Fast Rcpp implementation of Gauss-Hermite quadrature
Efficiently Using Gaussian Processes with Rcpp and RcppEigen
Fast Drawing and Shading of Graphs of Statistical Distributions
Robust Algorithm for Principal Component Analysis
Hierarchical Independent Component Analysis: a Multi-Scale
Sparse Non-Orthogonal Data-Driven Basis
FastICA Algorithms to perform ICA and Projection Pursuit
Learn from Training Data then Quickly Fill in Missing Data
A Fast Multiple-Kernel Method Based on a Low-Rank Approximation
Fast Computation of Multivariate M-estimators
FastPCS Robust Fit of Multivariate Location and Scatter
Foundations and Applications of Statistics Using R
Fits the FastRCS Robust Multivariable Linear Regression Model
Fast Interactive Framework for Web Scripting Using R
Fast Utility Function for Time Parsing and Conversion
Two-Locus Family-Based Association Test with Polytomic Outcome
Kiener Distributions and Fat Tails in Finance
Functions and Datasets for "Forest Analytics with R"
Gene by Environment Interaction and Conditional Gene Tests for
Nuclear Families
Algorithm for searching the space of Gaussian directed acyclic
graphical models through moment fractional Bayes factors
FISH Based Normalization and Copy Number inference of SNP
microarray data
Analyzing and Managing Facebook Ads from R
Association Football (Soccer) Ranking via Poisson Regression
Fast Algorithms to Bootstrap Receiver Operating Characteristics
Curves
Basics of Certificates and Structured Products Valuation
Rmetrics - Bivariate Dependence Structures with Copulae
A Method to Search for Differentially Expressed Genes and to
Detect Recurrent Chromosomal Copy Number Aberrations
Measuring functional diversity (FD) from multiple traits, and
other tools for functional ecology
Functional Data Analysis: K-Mean Alignment
Functional data analysis in a mixed model framework
Functional Data Analysis and Empirical Dynamics
Functional Data Analysis and Partial Differential Equations;
Statistical Analysis of Functional and Spatial Data, Based on
Regression with Partial Differential Regularizations
Interval Testing Procedure for Functional Data
Functional Data Analysis and Utilities for Statistical Computing
Multivariate Dependence with FDG Copulas
Permutation-based FDR Point and Confidence Interval Estimation
False Discovery Rate Procedure Under Discrete Null Distributions
Compute Sample Size that Meets Requirements for Average Power
and FDR
Estimation of (Local) False Discovery Rates and Higher Criticism
Frequency Distribution Tables, Histograms and Polygons
Local Inferential Feature Significance for Multivariate Kernel
Density Estimation
Creates a Model Matrix via Feature Hashing with a Formula
Interface
Feature Extraction for Discretely-Sampled Functional Data
Fechnerian Scaling of Discrete Object Sets
Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Client Package for the U.S. Federal Register API
Fixed Effects Nonlinear Maximum Likelihood Models
fExpressCertificates - Structured Products Valuation for
ExpressCertificates/Autocallables
Rmetrics - Extreme Financial Market Data
memory-efficient storage of large data on disk and fast access
functions
Basic Statistical Functions for Package 'ff'
Force field simulation for a set of points
Wrapper for FFTW3: Includes 1-D, Univariate and Multivariate,
and 2-D Transform
Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Fractional Gaussian Noise and power law decay time series model
fitting
Feature Grouping and Selection Over an Undirected Graph
Tests for Right and Interval-Censored Survival Data Based on the
Fleming-Harrington Class
Provide functions for forest inventory calculations
Classical, Reloaded and Adaptive FastICA Algorithms
File-Backed Matrix Class with Convenient Read and Write Access
Rmetrics - Economic and Financial Data Import
Financial Instrument Model Infrastructure for R
Classifies implicit trading activity from market quotes and
computes the probability of informed trading
Time Value of Money, Time Series Analysis and Computational
Finance
Covariance Matrix Estimation and Regularization for Finance
Find all root(s) of the equation and Find root(s) of the
equation by dichotomy
Python tools to find an acceptable python binary
Functions to operate on binary fingerprint data
Computation of the probability of ruin within a finite time
horizon
Financial Data from U.S. Securities and Exchange Commission
Companion to Tsay (2005) Analysis of Financial Time Series
Fisheye and Hyperbolic-space-alike Interactive Visualization
Tools in R
Iterative FISH-based Calibration of Hi-C Data
Fits Poisson-sum-of-Gammas GLMs, Tweedie GLMs, and delta
log-normal mdoels
FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
Help to Fit of a Parametric Distribution to Non-Censored or
Censored Data
FITS (Flexible Image Transport System) utilities
fitTetra is an R package for assigning tetraploid genotype
scores
Feature-Based Landscape Analysis of Continuous and Constraint
Optimization Problems
Fits Piecewise Constant Models with Data-Adaptive Knots
Implementation of optimal hierarchical clustering
Flexible Parametric Models for Censored and Truncated Data
Flexible Parametric Survival and Multi-State Models
Tools for Interacting with the Brazilian Flora 2020
Cytometric Diversity Indices from 'FlowJo' Workspaces
Tools for characterizing flowering traits
Forecasts future values of a univariate time series
Streamlining Design and Deployment of Complex Workflows
Daily Streamflow Trend and Change Point Screening
Path algorithm for the general Fused Lasso Signal Approximator
Flux rate calculation from dynamic closed chamber measurements
Data sets from "Forecasting: methods and applications" by
Makridakis, Wheelwright & Hyndman (1998)
A Flexible Modelling Environment for Inverse Modelling,
Sensitivity, Identifiability, Monte Carlo Analysis
Filtered Monotonic Polynomial IRT Models
Variable Selection in Finite Mixture of AFT Regression and FMR
Functions for Medical Statistics Book with some Demographic Data
Regression Models with Finite Mixtures of Skew Heavy-Tailed
Errors
Variance estimation of FMT method (Fully Moderated t-statistic)
Rmetrics - Analysing and Modeling Multivariate Financial Return
Distributions
Fast Nearest Neighbor Search Algorithms and Applications
Nonlinear and Chaotic Time Series Modelling
visualisation and analysis of food web networks
Rmetrics - Pricing and Evaluating Basic Options
Foraminifera and Community Ecology Analyses
Provides Foreach Looping Construct for R
Forecasting Functions for Time Series and Linear Models
Floating-Point Genetic Algorithms with Statistical Forecast
Based Inheritance Operator
Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka,
dBase, ...
Statistical Methods in Forensic Genetics
Statistical tools for the interpretation of forensic DNA
mixtures
Visualizes Random Forests with Feature Contributions
Advanced Forest Plot Using 'grid' Graphics
Imputation of Missing Values Through a Forward Imputation
Algorithm
Functions from the 2nd Italian Forest Inventory (INFC)
Elementary arithemtic in formal series rings
Utilities for Formulas, Expressions, Calls and Other Objects
Palaeoecological and Palaeogeographical Analysis Tools
Bayesian 4 Parameter Item Response Model
Restricted MLE for Functional Principal Components Analysis
Reliable Comparison of Floating Point Numbers
Rmetrics - Portfolio Selection and Optimization
Computing the noncentrality parameter of the noncentral F
distribution
Data for "Forecasting: principles and practice"
Approximation of First-Passage-Time Densities for Diffusion
Processes
Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
Fraction Proliferation via a Quiescent Growth Model
Fractal Time Series Modeling and Analysis
Estimation of Parameters p and q for Randomized Sierpinski
Carpet for [p-p-p-q]-Model
Generate fractal time series with non-normal returns
distribution
General Frailty Models: Shared, Joint and Nested Frailty Models
with Prediction
General Semiparametric Shared Frailty Model
Financial Risk Modelling and Portfolio Optimisation with R
Fuzzy Rule-Based Systems for Classification and Regression Tasks
Fast Regularized Canonical Correlation Analysis
Statistical algorithms used in common data mining course
Rmetrics - Regression Based Decision and Prediction
FREQ: Estimate population size from capture frequencies
Frequency Domain Analysis for Multivariate Time Series
Frequency Moving Average Plots (MAP) of Multinomial Data by a
Continuous Covariate
Frequency Profiles Computing and Plotting
Feature Selection Algorithms for Computer Aided Diagnosis
Fractional Factorial designs with 2-level factors
Catalogues of resolution IV 128 run 2-level fractional
factorials up to 33 factors that do have 5-letter words
Regression Analysis of Fractional Responses
Regression Analysis of Fractional Responses Under Unobserved
Heterogeneity
Regression Analysis of Panel Fractional Responses
The Generalized Hyperbolic Distribution, Related Distributions
and Their Applications in Finance
Functions for Simple Fisheries Stock Assessment Methods
Data to Support Fish Stock Assessment (FSA) Package
Automated Feature Selection from 'caret'
Import and Analysis of OMR Data from FormScanner
Wrapper Functions for FSL (FMRIB Software Library) from
Functional MRI of the Brain (FMRIB)
Social Relations Analyses with Roles ("Family SRM")
Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance
Mass Spectrometry Data
Features and Strings for Nonparametric Regression
R interface to tslib (a time series library in c++)
Spectral Density Estimation and Comparison for Functional Time
Series
FUzzy GEnetic, a machine learning algorithm to construct
prediction model based on fuzzy logic
Full Text of 'Scholarly' Articles Across Many Data Sources
Chi-Square and Exact Tests for Non-Parametric Functional
Dependencies
Functional Profiling of Microarray Expression Data
A package for functional data clustering
An algorithm for gene and gene set network inference
Clustering in the Discriminative Functional Subspace
Fungible Coefficients and Monte Carlo Functions
Model-based clustering in group-specific functional subspaces
Learning Data Cleaning, Visual Analysis and Model Performance
Simple Utility Providing Terminal Access to all R Functions
funreg (Functional Regression for Irregularly Timed Data)
Community Detection via Fused Principal Component Analysis
A Tiny Utility Providing Polymorphic Operations
Random matrix generation and manipulation
A framework for working in a functional programming paradigm in
R
Find, Characterize, and Explore Heat Waves in Climate
Projections
Exact calculation of fuzzy decision rules for multiple testing
Join Tables Together on Inexact Matching
Fuzzy Rank Tests and Confidence Intervals
Fuzzy Stationary Probabilities from a Sequence of Observations
of an Unknown Markov Chain
Forward search for Mokken scale analysis
Selecting Variables in Regression Models
Fire Weather Index System and Fire Behaviour Prediction System
Calculations
A package performing Dynamic Bayesian Network inference
Grain-Size Statistics and Description of Sediment
A genetic algorithm approach to determine stratum boundaries and
sample sizes of each stratum in stratified sampling
Abbreviating Items Measures using Genetic Algorithms
Framework for Generalized Subspace Pattern Mining
GAD: Analysis of variance from general principles
First Passage Time Simulation for Gaussian Diffusion Processes
Graphical Extension with Accuracy in Parameter Estimation
(GAIPE)
Genetic algorithms and C-steps based LTS (Least Trimmed Squares)
estimation
Fit the GamBin Model to Species Abundance Distributions
Generalized linear and additive models by likelihood based
boosting
Estimating multistate models using gamboost()
Functions and Data for a Course on Modern Regression and
Classification
Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for
Binary Classification
Statistical Estimation of Game-Theoretic Models
Generalised Additive Models for Location Scale and Shape
Fitting an Interval Response Variable Using gamlss.family
Distributions
Distributions to be Used for GAMLSS Modelling
Fitting Mixture Distributions with GAMLSS
Fitting non linear parametric GAMLSS models
Generating and fitting truncated (gamlss.family) distributions
Generalized additive mixed models using mgcv and lme4
classic gamma regression: joint modeling of mean and shape
parameters
Generalized additive mixed model analysis via slice sampling
Fit Regularization Path for Generalized Additive Models
Gene Association Network-based Pathway Analysis
Genetic Algorithm optimization for real-based and
permutation-based problems
Functions for Drawing Gapped Cluster Heatmap with ggplot2
Authorize and Request Google Analytics Data
Genetic Algorithm (GA) for Variable Selection from
High-Dimensional Data
Genetic Data Manipulation (Quality Control, GRM and LD
Computations, PCA), Linear Mixed Models (AIREML Algorithm),
Association Testing
Difference measures for multivariate Gaussian probability
density functions
Collection of functions for Gaussian quadrature
Gazepath Transforms Eye-Tracking Data into Fixations and
Saccades
Generalize Lambda Distribution and Generalized Bootstrapping
Generalized Beta Distribution of the Second Kind: Properties,
Likelihood, Estimation
Utilities for processing Rd objects and files
Simulation of Real and Complex Numbers and Small Programming
Utilities
Guided Correction Approach for Inherited bias (GCAI.bias)
Graph-based two-sample tests for categorical data
GPU/CPU Benchmarking in Debian-based systems
LASSO and (adaptive) Elastic-Net penalized least squares,
logistic regression, HHSVM and squared hinge loss SVM using a
fast GCD algorithm
Concord method for Graphical Model Selection
Datasets for the Book Graphical Data Analysis with R
Wrappers for the Geospatial Data Abstraction Library (GDAL)
Utilities
Various R Programming Tools for Data Manipulation
A toolbox for the analysis of categorical data in social
sciences, and especially Geometric Data Analysis
Download, slice, and normalize GDELT data
Generalized Diffusion Magnetic Resonance Imaging
Distances and Routes on Geographical Grids
Functions for Generalized Dissimilarity Modeling
Modified Variance Estimators for Generalized Estimating
Equations
Calculate Generalized Eigenvalues, the Generalized Schur
Decomposition and the Generalized Singular Value Decomposition
of a Matrix Pair with Lapack
Network Meta-Analysis Using Bayesian Methods
Package contains data which is used by GenABEL example and test
functions
Global ENvironmental ASsessment Information System (GENASIS)
computational tools
Clopper-Pearson Confidence Interval and Generalized Binomial
Distribution
Predict Gender from Names Using Historical Data
Identification of Periodically Expressed Genes
Bayesian calculation of gene-specific FST from genomic SNP data
Detection of structure from multilocus genetic data
Profiling a gene list into GOslim or KEGG function pie
Belief Propagation in Genotype-Phenotype Networks
Genetic Epidemiology Design and Inference
Blinder-Oaxaca Decomposition for Generalized Linear Model
Generate Data Containing Fake Personally Identifiable
Information
Construct time delay gene regulatory network
Genome-Wide Association Study with SLOPE
Identify Favorable Subsets of Germplasm Collections
Collection of Genetic Data Analysis Tools
Spatial Graph-Theoretic Genetic Gravity Modelling
The Forward Imputation: A Sequential Distance-Based Approach for
Imputing Missing Data
A New, Fast, and Outlier Resistant Hierarchical Clustering
Algorithm
Functions for generating and manipulating binned kernel density
estimates
Path algorithm for generalized lasso problems
Functions for the Bayesian Analysis of GWAS Data
Application of MOSS algorithm to genome-wide association study
(GWAS)
Plot Publication-Grade Gene and Genome Maps
Simulation of Discrete Random Variables with Given Correlation
Matrix and Marginal Distributions
Generalized PATHMOX Algorithm for PLS-PM, LS and LAD Regression
Generalized Ridge Trace Plots for Ridge Regression
R Functions for Generalized Simulated Annealing
Spline Based Window Boundaries for Genomic Analyses
Draw and Annotate Maps, Especially Charts of the North Atlantic
Analysis of Geostatistical Data using Bayes and Empirical Bayes
Methods
Analysis and Modeling for Geostatistical Count Data
A geometrical Approach to Differential expression and gene-set
enrichment
3D-Visualization of Geoelectric Resistivity Measurement Profiles
Spatial Prediction for Function Value Data
Quantification of the effect of geographic versus environmental
isolation on genetic differentiation
Convert Data from and to 'geoJSON' or 'topoJSON'
Web-Processing of Large Gridded Datasets
Data for topographic and Geologic Mapping
Network Visualization in the 'ggplot2' Framework
Geometric Morphometric Analyses of 2D/3D Landmark Data
Interface to www.geonames.org web service
Geophysics, Continuum Mechanics, Mogi Models, Gravity
A Package for Generalised Linear Spatial Models
Robust Geostatistical Analysis of Spatial Data
Facilitate Generating of Distance Matrices Used in Package
'spacom' and Plotting Data on Maps
Geostatistical Analysis and Design of Optimal Spatial Sampling
Networks
Spatio-Temporal; Inverse Distance Weighting and Radial Basis
Functions with Distance-Based Regression
Geostatistical Modelling with Likelihood and Bayes
An R Plug-in for the Distributed Hydrological Model GEOtop
Interactive exploratory spatial data analysis
Estimation and Fit Diagnostics for Generalized Exponential
Random Graph Models
Generalized Structured Component Analysis (GSCA)
Get Meteorological Data for Hydrologic Models
Parsing Command-Line Arguments and Variable Interpolation
GetR: Calculate Guttman error trees in R
General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
Get Data for Brazilian Bonds (Tesouro Direto)
Learning Optimization and Machine Learning for Statistics
GEV Conditional Density Estimation Network
ARMA-GARCH/APARCH Models with GEV and Stable Distributions
A visual, intuitive, easy to use software giving access to a new
type of information buried into your microarray data
Tools for Working with Hansen et al. Global Forest Change
Dataset
Extra Coordinate Systems, Geoms and Statistical Transformations
for 'ggplot2'
Categorical Scatter (Violin Point) Plots
Visualization of a Correlation Matrix using 'ggplot2'
Create Dendrograms and Tree Diagrams Using 'ggplot2'
Visualization Tools for Genealogical Data
Add Marginal Histograms to 'ggplot2', and More 'ggplot2'
Enhancements
Data Visualization Tools for Statistical Analysis Results
Make 'ggplot2' Graphics Interactive Using 'htmlwidgets'
Group Lasso Penalized Learning Using A Unified BMD Algorithm
Tools for Analyzing MCMC Simulations from Bayesian Inference
Gaussian Graphical Models Using Ridge Penalty Followed by
Thresholding and Reestimation
Geometries to Plot Networks with 'ggplot2'
Variations of Parallel Coordinate Plots for Categorical Data
An Implementation of the Grammar of Graphics
Allows Interactive Visualization of Data Through a Web Browser
GUI
Repulsive Text and Label Geoms for 'ggplot2'
Scientific Journal and Sci-Fi Themed Color Palettes for
'ggplot2'
'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
North Symbols and Scale Bars for Maps Created with 'ggplot2' or
'ggmap'
Extensions to 'ggplot2' for Radiation Spectra
Offers Various Swiss Maps as ggplot2 Objects
An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Extra Themes, Scales and Geoms for 'ggplot2'
A package on the generalized hyperbolic distribution and its
special cases
Gene Set Uncertainty in Enrichment Analysis
Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
Naive Gibbs Sampling with Metropolis Steps
Random Variate Generator for the GIG Distribution
Gillespie's Stochastic Simulation Algorithm (SSA)
Group Iterative Multiple Model Estimation
Computing the Gini Coefficient for Weighted and Negative
Attributes
Generalized Iterative Proportional Fitting for Relational Models
The giRaph package for graph representation in R
Quantification of Pinned Microbial Cultures
Constructing panels of population pyramid plots based on lattice
Lasso Penalization in Large Scale Generalized Linear Array
Models
Generalized Linear Autoregressive Moving Average Models
Graphical lasso- estimation of Gaussian graphical models
General Linear Ballistic Accumulator Models
Calculate Textures from Grey-Level Co-Occurrence Matrices
(GLCMs)
Estimation and Use of the Generalised (Tukey) Lambda
Distribution
Fitting Single and Mixture of Generalised Lambda Distributions
(RS and FMKL) using Various Methods
An Asymmetry-Steepness Parameterization of the Generalized
Lambda Distribution
Fit GLD Regression Model and GLD Quantile Regression Model to
Empirical Data
Learning Interactions via Hierarchical Group-Lasso
Regularization
Fitting Generalized Linear Models Subject to Constraints
Distributed 'glm' for Big Data using 'ddR' API
Graph-Constrained Regularization for Sparse Generalized Linear
Models
Fit GLM with LEP-based penalized maximum likelihood
Generalized Linear Mixed Models via Monte Carlo Likelihood
Approximation
Generalised Linear Mixed Models and Spatial Models with WinBUGS,
BRugs, or OpenBUGS
Gauss-Seidel Generalized Linear Mixed Model solver
Variable Selection for Generalized Linear Mixed Models by
L1-Penalized Estimation
Generalized linear models with clustering
Generalized Linear Mixed Model (GLMM) for Binary Randomized
Response Data
Lasso and Elastic-Net Regularized Generalized Linear Models
Fit a penalized constrained continuation ratio model for
predicting an ordinal response
L1 Regularization Path for Generalized Linear Models and Cox
Proportional Hazards Model
Fit a penalized continuation ratio model for predicting an
ordinal response
Model selection and multimodel inference made easy
Variable Selection Deviation Measures and Instability Tests for
High-Dimensional Generalized Linear Models
Testing the additional predictive value of high-dimensional data
Bi-Level Optimization of Metabolic Network Models
Global Gene-Set Analysis for Association Studies
Generate Functions to Get or Set Global Options
Objective functions for benchmarking the performance of global
optimization algorithms
Identify Global Objects in R Expressions
Plot 2D and 3D Views of the Earth, Including Major Coastline
Fitting and Testing Generalized Logistic Distributions
Generalized Logrank Tests for Interval-censored Failure Time
Data
Generalized Least Squares with Measurement Error
Distance and Travel Time Between Two Points from Google Maps
Fast Estimation of Gaussian Mixture Copula Models
Graph Based Multiple Comparison Procedures
Generalized Minimum Distance of distributions
Short Term Forecasting via GMDH-Type Neural Network Algorithms
Geometric Median, k-Median Clustering and Robust Median PCA
Meta-Analysis via a Unified Framework of Confidence Distribution
Descriptive Statistics, Transition Plots, and More
Generalized Method of Moments and Generalized Empirical
Likelihood
Multinomial Logit Models with Random Parameters
Various R Programming Tools for Model Fitting
Interface between GMT Map-Making Software and R
Computation of Generalized Nash Equilibria
Generalized Non-negative Matrix Factorization Based on Renyi
Divergence
Read Data from Files Readable by Gnumeric
Weighted and lexicographical goal programming and optimization
Model-diagnostics based on cumulative residuals
Testing Goodness-of-Fit with the Kernel Density Estimator
Tests of Fit for some Probability Distributions
Classical Goodness-of-Fit Tests for Univariate Distributions
Generalized Orthogonal GARCH (GO-GARCH) models
Association Analysis for Categorical Variables
Easy Authentication with Google OAuth2 APIs
Collect Data Programmatically by POST Methods to Google Forms
Working with Google Public Data Explorer DSPL Metadata Files
Visualization of Functional Analysis Data
Fit Generalized Odds Rate Mixture Cure Model with Interval
Censored Data
functions to get public survey data in Japan
Gaussian Processes for Pareto Front Estimation and Optimization
Batch Effect Detection via Guided Principal Components Analysis
GPCSIV, Generalized Principal Component of Symbolic Interval
variables
General Profiling Method for Delay Differential Equation
Bootstrap goodness-of-fit test for the generalized Pareto
distribution
Apply Gaussian Process in Functional data analysis
Generalized partial linear models (GPLM)
Various R Programming Tools for Plotting Data
Generalized Partially Linear Tree-Based Regression Model
Analysing and plotting genotype-phenotype maps
A Minimalistic package to apply Gaussian Process in R
gpseq: Using the generalized Poisson distribution to model
sequence read counts from high throughput sequencing
experiments
Maximum Likelihood Estimation of Multiple Membership Mixed
Models Used in Value-Added Modeling
Graph-Constrained Estimation and Hypothesis Tests
Species distribution modelling using latent Gaussian random
fields
Graphical Representation and Modeling of Metagenomic Reads
Graphical Analysis of Variance Using ggplot2
Efficient selection of undirected graphical models for
high-dimensional datasets
A Multi-Platform GUI for Drawing Customizable Graphs in R
Graphical VAR for Experience Sampling Data
Cluster Detection with Hypothesis Free Scan Statistic
Inference in Graphical Gaussian Models with Edge and Vertex
Symmetries
Fit a Grey-Zone Model with Survival Data
Miscellaneous Functions for "Grid" Graphics
Redraw Base Graphics Using 'grid' Graphics
Uses Grieg-Smith method on 2 dimentional spatial data
Generalized Regression on Orthogonal Components
The package was developed to fit fit many growth curves obtained
under different conditions
Gromov-Hausdorff Type Distances for Labeled Metric Spaces
Regression Analysis of Grouped and Coarse Data
Regularized Multivariate Regression for Identifying Master
Predictors Using the GroupRemMap Penalty
A GUI-Based Program to Compute Probabilities Regarding Group
Sequential Designs
Multiple Testing Procedure for Grouped Hypotheses
Bayesian Semi and Nonparametric Growth Curve Models that
Additionally Include Multiple Membership Random Effects
Bayesian Non-Parametric Dependent Models for Time-Indexed
Functional Data
Simple Metrics to Summarize Growth Curves
Bayesian reconstruction of growth velocity
Estimate Growth Rates from Experimental Data
Fitting user specified models with Group Lasso penalty
Concave 1-norm and 2-norm group penalty in linear and logistic
regression
Regularization Paths for Regression Models with Grouped
Covariates
Penalized Regression Models with Overlapping Grouped Covariates
Alternative Implementations of Base R Functions
Tools for the Analysis of Gutenberg-Richter Distributions of
Earthquake Magnitudes
Gene Set Analysis using the Gamma Method
Two functions for Generalized SARIMA time series simulation
Robust Estimation in the Presence of Cellwise and Casewise
Contamination and Missing Data
Semi-Supervised Generalized Structural Equation Modeling
Group Sequential Design in Equivalence Studies
Download Google Sheets Using Just the URL
Copula Density and 2-D Hazard Estimation using Smoothing Splines
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Utilities for strings and function arguments
Estimation of the Generalized Symmetry Point, an Optimal
Cutpoint in Continuous Diagnostic Tests
Calculate efficiencies of group testing algorithms with
correlated responses
Game-Theoretically OPtimal (GTOP) Reconciliation Method
R Functions to Perform and Display Google Trends Queries
Maps, data and methods related to Guerry (1833) "Moral
Statistics of France"
Adjust Estimates of Learning for Guessing
Implementation of Sampling Formulas for the Unified Neutral
Model of Biodiversity and Biogeography, with or without Guild
Structure
Statistical Analysis of Monthly Background Checks of Gun
Purchases
Fast Calculation of the Likelihood of a Stochastic Survival
Model
Regularized Categorical Effects/Categorical Effect
Modifiers/Continuous/Smooth Effects in GLMs
Global Validation of Linear Models Assumptions
Genome-Wide Association/Interaction Analysis and Rare Variant
Analysis with Family Data
Exact Hardy-Weinburg testing for Genome Wide Association Studies
Controlling the genome-wide type I error rate in association
mapping experiments
Calculation of probabilities for inadequate and excessive
gestational weight gain
gWidgets API for building toolkit-independent, interactive GUIs
Rewrite of gWidgets API for Simplified GUI Construction
Implementation of gWidgets2 for the RGtk2 Package
Toolkit Implementation of gWidgets2 for tcltk
Toolkit implementation of gWidgets for RGtk2
Toolkit implementation of gWidgets for tcltk package
Geographically Weighted Logistic Elastic Net Regression
Generalized Waring Regression Model for Count Data
Fits geographically weighted regression models with diagnostic
tools
Genome-wide significance for whole genome sequencing studies
Maximum Likelihood Estimation for Gene-by-Measured Environment
Interaction Models
Software to perform Haar Fisz transforms
Estimation, Simulation and Visualization of Hierarchical
Archimedean Copulae (HAC)
Utilities for using R scripts in Hadoop streaming
Hierarchical Optimal Matching and Machine Learning Toolbox
Univariate non-parametric two-sample test based on empirical
Hankel transforms
Inference of Trait Associations with SNP Haplotypes and Other
Attributes using the EM Algorithm
Analyzing Case-Parent Triad and/or Case-Control Data with SNP
Haplotypes
Estimate Haplotype Relative Risks in Case-Control Data
Statistical Analysis of Haplotypes with Traits and Covariates
when Linkage Phase is Ambiguous
Tool for Clustering Genotypes in Haplotypes
Haplotype Inference and Statistical Analysis of Genetic
Variation
Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Harmonic Regression to One or more Time Series
Full feature implementation of hash/associated
arrays/dictionaries
A collection of non-cryptographic hash functions
Generate Short Unique YouTube-Like IDs (Hashes) from Integers
Hawkes process simulation and calibration toolkit
Damage functions from FEMA's HAZUS software for use in modeling
financial losses from natural disasters
Hierarchical Bayesian Modeling of Decision-Making Tasks
Hierarchical Bayesian Regression for GLMs
Hill/Bliss Independence Model for Combination Vaccines
Hierarchical Bayesian Analysis of Recognition Memory
Hierarchical Bayesian Small Area Estimation
Hierarchical Bayesian Space-Time models for Gaussian space-time
data
Interval estimation for the parameters of linear models with
heteroskedasticity (Wild Bootstrap)
Change Point Estimation for Regression with Heteroscedastic Data
High Dimensional Supervised Classification and Clustering
Use known groups in high-dimensional data to derive scores for
plots
Hierarchical DECOmposition of Entropy for Categorical Map
Comparisons
Tests for High Dimensional Generalized Linear Models
Statistical Analysis Tools for High Dimension Molecular Data
(HDMD)
Nomograms for High-Dimensional Cox Models
Interface to the UNDR Human Development Report API
Highest density regions and conditional density estimation
The Lasso for the Tweedie's Compound Poisson Model Using an
IRLS-BMD Algorithm
Health Effects of Air Pollution and Temperature (HEAT)
Heat exchange calculations during physical activity
Fit statistic for binary dependent variable models
Robust Estimation Using Heavy-Tailed Distributions
Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()'
and 'as.data.frame()'
Visualizing Hypothesis Tests in Multivariate Linear Models
Hierarchical Exponential-Family Random Graph Models
Marker-Based Estimation of Heritability Using Individual Plant
or Plot Data
Holonomic Gradient Method and Gradient Descent
Handy Functions for Working With HGNC Gene Symbols and
Affymetrix Probeset Identifiers
Statistical Analysis and Data Display: Heiberger and Holland
Heller-Heller-Gorfine Tests of Independence and Equality of
Distributions
The Hilbert-Huang Transform: Tools and Methods
Simulation from distributions supported by nested hyperplanes
Multiple Logistic Regression for 3D Chromatin Domain Border
Analysis
The All-Configurations, Maximum-Interaction F-Test for Hidden
Additivity
Inference on High Dimensional Max-Stable Distributions
Functions For Performing Hierarchical Analysis of Distance
Sampling Data
Set Data Visualization Using Hierarchies
Hierarchical Multiplicative Partitioning of Complex Phenotypes
Estimation and Tests of Hierarchical F-Statistics
A graphical user interface for calculating power and sample size
for hierarchical data
Convex Hierarchical Testing of Interactions
Two-Sample Tests for Equality of Means in High Dimension
Outlier Detection Algorithms for High-Dimensional Data
Two-Sample Tests for High-Dimensional Mean Vectors
Determining and Evaluating High-Risk Zones
Simultaneous Critical Values for t-Tests in Very High Dimensions
Estimation of Heritability in Linear Mixed Models
H-Index Calculator using Data from a Web of Science (WoS)
Citation Report
Tools for hypothesis testing based on Hypergeometric
Intersection distributions
Hierarchical Semiparametric Regression of Test Statistics
Data Sets from the History of Statistics and Data Visualization
Construction of regular and irregular histograms with different
options for automatic choice of bins
"Hit and Run" and "Shake and Bake" for Sampling Uniformly from
Convex Shapes
HIV calibrated model life tables for countries with generalized
HIV epidemics
Conversion Tools for HK80 Geographical Coordinate System
Spatial Extreme Value Analysis with the Hierarchical Model of
Reich and Shaby (2012)
Diagnostic Tools for Hierarchical (Multilevel) Linear Models
Hierarchical Latent Space Network Model (HLSM)
The H-measure and other scalar classification performance
metrics
Hidden Markov Model for Continuous Observations Processes
Hidden Markov Models with Discrete Non-Parametric Observation
Distributions
Analysing accelerometer data using hidden Markov models
Hypothesis Testing and Power Calculations for Comparing
Metagenomic Samples from HMP
Statistical Object Oriented Data Analysis of RDP-Based Taxonomic
Trees from Human Microbiome Data
Flux Estimation with Static Chamber Data
Half-Normal Plots with Simulation Envelopes
Information Retrieval for Genetic Datasets
Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
Theoretical Model to Simulate Radical Polymerization
Homogeneity tests for Regional Frequency Analysis
Transmissions and Receptions in a Hop by Hop Network
Horn's (1965) Test to Determine the Number of Components/Factors
Hot Deck Imputation Methods for Missing Data
A lower bound for the number of correct rejections
Heligman Pollard mortality model parameter estimation using
Bayesian Melding with Incremental Mixture Importance Sampling
High Performance Cluster Models Based on Kiefer-Wolfowitz
Recursion
Miscellaneous convenience functions and dataset
Regularization Paths for Huber Loss Regression and Quantile
Regression Penalized by Lasso or Elastic-Net
Hierarchical Spatial Autoregressive Model (HSAR)
A Handbook of Statistical Analyses Using R (1st Edition)
A Handbook of Statistical Analyses Using R (2nd Edition)
A Handbook of Statistical Analyses Using R (3rd Edition)
Manage, Analyse and Simulate Hyperspectral Data
hierarchical Bayesian species distribution models
Canonical Correlation Analysis based on Kernel Independence
Measures
Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data
Meta-Analysis of Diagnostic Test Accuracy when Reference Test is
Imperfect
Facilitates Automated HTML Report Creation
Clustering high throughput sequencing (HTS) data
compute HUM value and visualize ROC curves
Simplify Analysis and Annotation of Human Microarray Datasets
Morphological Analysis and Spell Checker for R
Models and Tests for Departure from Hardy-Weinberg Equilibrium
and Independence Between Loci
Bayesian investigation of Hardy-Weinberg Equilibrium via
estimation and testing
Objective Bayesian Testing for the Hardy-Weinberg Equilibrium
Problem
Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
HTML Writer - Outputs R objects in HTML format
hwriterPlus: Extending the hwriter Package
Exact Tests for Hardy-Weinberg Proportions
Build, Deploy and Evaluate Hybrid Ensembles
Implementation of the Hybrid Monte Carlo and Multipoint Hybrid
Monte Carlo sampling techniques
Stochastic Hybrid Models in Dynamic Networks
Hybrid Bayesian Networks Using R and JAGS
Tools and models for hydrological applications
Groundwater data presentation and interpretation
Goodness-of-fit functions for comparison of simulated and
observed hydrological time series
R codes for estimating water retention and infiltration model
parameters using experimental data
Particle Swarm Optimisation, with focus on Environmental Models
Hydrologic Indices for Daily Time Series Data
Time series management, analysis and interpolation for
hydrological modelling
A generalization of the Dirichlet distribution
Work with Hyperspectral Data, i.e. Spectra + Meta Information
(Spatial, Time, Concentration, ...)
High-Dimensional Kernel Density Estimation and Geometry
Operations
Tools to Hyphenate Strings Using the 'Hunspell' Hyphenation
Library
Macroevolutionary phylogentic analysis of species trees and gene
trees
Confidence Intervals and Tests of Statistical Hypotheses
Tools for Modeling Rate-Dependent Hysteretic Processes and
Ellipses
Synthesizing Information Across Collaborating Research
Model Selection for Index of Asymmetry Distribution
Functions to use with data from the Implicit Association Test
Implicit Association Test Scores Using Robust Statistics
Integrative Bayesian Analysis of Transcriptomic and CGH Data
Functions for the Analysis of IBD Haplo Output
Convert Between Different IBD-State Labelling Schemes
Regression Methods for IBD Linkage With Covariates
Simulation of Chromosomal Regions Shared by Family Members
Irregular-lattice based ensemble empirical mode decomposition
Iboot: iterated bootstrap tests and confidence sets
R API to Interactive Brokers Trader Workstation
An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
A Copy Number and Expression-Based Classifier for Breast Tumours
Inequality and Concentration Indices and Curves
Standardized high-throughput evaluation of cell-based compound
screens
Independent Components Analysis (ICA) based artifact correction
Calibrates and Reweights Units in Samples
Bayesian Semiparametric Models for Interval-Censored Data
Facilitating Estimation of the Intraclass Correlation
Coefficient
Multilevel model intraclass correlation for slope heterogeneity
Calculation of Sample Size and Power for ICC
Tools for Working with ICD-9 Codes, and Finding Comorbidities
Individual Conditional Expectation Plot Toolbox
Incremental Cost-Effectiveness (ICE) Statistical Inference from
Two Unbiased Samples
Regression Models for Interval Censored Data
Study Design and Data Analysis in the Presence of Error-Prone
Diagnostic Tests and Self-Reported Outcomes
Estimation of number of clusters and identification of atypical
units
Fit Generalized Odds Rate Hazards Model with Interval Censored
Data
Inequality constrained inference in linear normal situations
A Button-Based GUI for Financial and Economic Data Analysis
Integrative clustering of multiple genomic data types
A Modified Random Survival Forest Algorithm
Tools for Exploring Multivariate Data via ICS/ICA
A package for semiparametric regression analysis of
interval-censored data
R Interface to the US Census Bureau International Data Base API
Jacquard Condensed Coefficients of Identity
Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch)
Imprecise Dirichlet Process for Survival Analysis
Identify Turtles by their Plastral Biometries
R Analysis package for iDynoMiCS Simulation Results
Functions to set and get the IEEE rounding mode
Irucka Embry's Miscellaneous Data Collection
An integrative factor analysis model for drug-pathway
association inference
Toolkit for Item Factor Analysis with OpenMx
Italian Fiscal Code ('Codice Fiscale') Utilities
Statistical Tests and Utilities for Genetic Association
Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic'
Data)
A Collection of Network Data Sets for the 'igraph' Package
Convert iGraph graps to SoNIA .son files
Instagram 2014 Vancouver Top Colour Dataset
Consistency, Homogeneity and Summary Statistics of
Climatological Data
Improved Laplace Approximation for Integrals of Unimodal
Functions
Lee-Carter Mortality Models using Iterative Fitting Algorithms
Item Response Models for Multiple Ratings
Identifying Causal Effect for Multi-Component Intervention Using
Instrumental Variable Method
Imprecise Inferential Framework for Poisson Sampling Model
Minimum distance estimation in an imprecise probability model
A collection of methods for left-censored missing data
imputation
The Multifactor Dimensionality Reduction (MDR) Analysis for
Incomplete Data
Impute Missing Values in a Predictive Context
Imputing the Last Largest Censored Observation(s) Under Weighted
Least Squares
Mixture models for longitudinal count data
Analysing Inbreeding Based on Genetic Markers
Nonparametric tests of independence between random vectors
Relationship Between Species and Groups of Sites
Integrate INEGI’s (Mexican Stats Office) API with R
Measuring Inequality, Concentration, and Poverty
Interpolation and Extrapolation for Species Diversity
Infine-dimensional model (IDM) to analyse phenotypic variation
in growth trajectories
Functions to extract inferential values of a fitted model object
Inference about the standardized mortality ratio when evaluating
the effect of a screening program on survival
Methods for Causal Inference with Interference
Tools for Detecting Influential Data in Mixed Effects Models
Software Tools to Quantify Structural Importance of Nodes in a
Network
Case Influence in Structural Equation Models
Information Decomposition of Two-phase Experiments
Data Exploration with Information Theory (Weight-of-Evidence and
Information Value)
Performance Analysis and Companion Functions for Binary
Classification Models
Sequence Statistics for Relational Event Models
Functions to Inline C, C++, Fortran Function Calls from R
Convert inline comments to documentation
Analyse Text Documents Using Ecological Tools
insideRODE includes buildin functions with deSolve solver and
C/FORTRAN interfaces to nlme, together with compiled codes
Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
Check, Install and Load CRAN & USGS GRAN Packages
Using R to Install Stuff (Such As: R, Rtools, RStudio, Git, and
More!)
A Collection of Insurance Datasets Useful in Risk Classification
in Non-life Insurance
procedures for automated interpolation - methods only to be used
interactively, not included in intamap package
Iterated Convex Minorant Algorithm for interval censored event
data
Joint Modelling of the Gene-Expression and Bioassay Data, Taking
Care of the Effect Due to a Fingerprint Feature
Tests for marginal interactions in a 2 class response model
Calculates Critical Test Statistics to Control False Discovery
and Familywise Error Rates in Marginal Effects Plots
interactive network analysis and visualization
Compute Chi-Square Measures with Corrections
Cure Rate Estimators for Interval Censored Data
Exact Confidence Intervals in the Presence of Interference
Coercion Routines for Network Data Objects
Plot the Effects of Variables in Interaction Terms
Hourly interpolation of multiple temperature daily series
Binary Classifier and Regression Model Interpretation Functions
Simulation of Inter-Related Genomic Datasets
Weighted Logrank Tests and NPMLE for interval censored data
Tools for Working with Points and Intervals
Interventional Inference for Dynamic Bayesian Networks
Numerical Integration for Integrated Likelihood
linear programming solver by the interior point method and
graphically (two dimensions)
methods for analyzing introgression between divergent lineages
Threshold regression that fits the (randomized drift) inverse
Gaussian distribution to survival data
A Unified Framework for Input-Output Operations in R
Calling Copy Number Alterations in Amplicon Sequencing Data
Calculate the Number of Required Flows for Semiconductor
Sequencing
Functions for smoothing with infinite order flat-top kernels
Tools for subgroup analyses with multiple trial data using
aggregate statistics
Spatial Interpolation by Inverse Path Distance Weighting
Fast Implementation of the Iterative Proportional Fitting
Procedure in C
Builds and analyses Integral Projection Models (IPMs)
Interfaces to Phylogenetic Software in R
Introduction to Probability and Statistics Using R
Manipulate, Validate and Resolve 'IP' Addresses
Integrative Random Forest for Gene Regulatory Network Inference
Regression methods for interval-valued variables
Classes and Methods for Seismic Data Analysis
Fast Truncated SVD, PCA and Symmetric Eigendecomposition for
Large Dense and Sparse Matrices
Various Coefficients of Interrater Reliability and Agreement
Simple interface to the estimation and plotting of IRT models
Utilities and Probability Distributions Related to
Multidimensional Person Item Response Models
Estimation of Tree-Based Item Response Models
Iterative Selection of Blocks of Features - ISBF
Provides datasets for Introduction to Statistical Data Analysis
for the Life Sciences
Fitting Ising models using the eLasso method
Sampling Methods and Distribution Functions for the Ising Model
Stochastic Island Biogeography Theory Made Easy
Data for An Introduction to Statistical Learning with
Applications in R
An Introduction to Statistical Modeling of Extreme Values
Functions to Perform Isotonic Regression
Confidence intervals for current status data based on
transformations and bootstrap
Order-Restricted Inference for Microarray Experiments
Calculation of isotopic pattern for a given molecular formula
Active Set and Generalized PAVA for Isotone Optimization
Penalized Isotonic Regression in one and two dimensions
Week of the year and weekday according to ISO 8601
Approximate probability densities by iterated Laplace
Approximations
Efficient Iterator for Permutations and Combinations
itertools2: Functions creating iterators for efficient looping
Tools for classification and regression trees, with an emphasis
on interpretability
Interpreting Time Series and Autocorrelated Data Using GAMMs
Time series analysis package for students
Incorporating Uncertainties in Propensity Scores
Bayesian Instrumental Variable Estimation and Model
Determination via Conditional Bayes Factors
Instrumental fixed effect panel data model
Uses heteroscedasticity to estimate mismeasured and endogenous
regressor models
Statistical Inference and Sensitivity Analysis for Instrumental
Variables Model
Improved methods for causal inference and missing data problems
Simulation-Based Maximum Likelihood Parameter Estimation
Jackknife Estimates of Kaplan-Meier Estimators or Integrals
Statistical Inference of Variables Driving Systematic Variation
Blind Source Separation Methods Based on Joint Diagonalization
and Some BSS Performance Criteria
A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
Joint Analysis of Genotype and Group-Specific Variability Using
a Novel Score Test Approach to Map Expression Quantitative
Trait Loci (eQTL)
Analysis Tools for the 'JAMES' Framework
R modules for JASPAR databases: a collection of transcription
factor DNA-binding preferences, modeled as matrices
Misc Small Tools and Helper Functions for Other Code of J.
Buttlar
One-to-One Gene-Probeset Mapping for Affymetrix Human
Microarrays
Joint Generalized Estimating Equation Solver
Performs the Joint Graphical Lasso for sparse inverse covariance
estimation on multiple classes
Chinese Text Segmentation Data for jiebaR Package
Joint Modeling of Longitudinal and Survival Data
Joint Modeling of Longitudinal and Time-to-Event Data under a
Bayesian Approach
Joint Mean-Covariance Models using 'Armadillo' and S4
Joint Modeling of Longitudinal and Survival Data - Power
Calculation
Tools for Time Series Analysis Based on Symbolic Aggregate
Dicretization
Permutation Tests for Nonparametric Statistics
Joint modelling of repeated measurements and time-to-event data
Penalized Likelihood Estimation and Prediction under the Joint
Cox Models Between Tumour Progression and Death for
Meta-Analysis
Joint Approximate Diagonalization of a set of square matrices
Risk estimation using the joint probability method
Joint Modelling of Mixed Correlated Binary and Continuous
Responses : A Latent Variable Approach
Multilevel Joint Modelling Multiple Imputation
Functions for some Unit-Level Small Area Estimators and their
Variances
Covariance and Inverse Covariance Matrix Estimation Using Joint
Penalty
Methods for population-based cancer survival analysis
Joint Random Forest (JRF) for the Simultaneous Estimation of
Multiple Related Networks
Jack-Knife Support for Evolutionary Distinctiveness Indices I
and W
Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes
A Robust, High Performance JSON Parser and Generator for R
Create a Simple Web API for your R Functions
Package to identify and sort genes overexpressed
Kantorovich Distance Between Probability Measures
Non-Additive Measure and Integral Manipulation Functions
Sample Size Estimation Functions for Studies of Interobserver
Agreement
Calculates "vectorial Kappa", an index of congruence between
patchy mosaics
K-Adaptive Partitioning for Survival data
Kinetic analysis and visualization of DCE-MRI data
Kernel Smoothing for Bivariate Copula Densities
Nonparametric method for identifying discordant phylogenetic
trees
Kernel Estimator and Bandwidth Selection for Density and Its
Derivatives
Arrays with Better Control over Dimension Dropping
Calculate Solutions to the Kelvin Differential Equation using
Bessel Functions
Kendall rank correlation and Mann-Kendall trend test
Nonparametric kernel estimation of the distribution function.
Bandwidth selection and estimation of related functions
Expectile Regression in Reproducing Kernel Hilbert Space
Distance Weighted Discrimination (DWD) and Kernel Methods
Kernel Factory: An Ensemble of Kernel Machines
Kernel Density Estimation for Heaped and Rounded Data
Functions for Kernel Smoothing Supporting Wand & Jones (1995)
Kalman Filter and Smoother for Exponential Family State Space
Models
Integrated Code Chunk Anchoring and Referencing for R Markdown
Documents
Kalman Filter, Smoother and Disturbance Smoother
Framework for the Analysis of Kinetic Visual Field Data
Routines for Fitting Kinetic Models to Chemical Degradation Data
a Keep It Simple Species Migration Model
Spectral response of water wells to harmonic strain and pressure
Linear equations with Kronecker structure
Kaplan-Meier Estimator with Constraints for Right Censored Data
-- a Recursive Computational Algorithm
Confidence intervals for the Kaplan-Meier estimator
Kaplan-Meier Simultaneous Confidence Band for the Survivor
Function
Distributed k-Means for Big Data using 'ddR' API
Kaplan-Meier multiple imputation for the analysis of cumulative
incidence functions in the competing risks setting
Clustering longitudinal data using the likelihood as a metric of
distance
K-Means for Longitudinal Data using Shape-Respecting Distance
K-Means with Simultaneous Outlier Detection
Data sets from Klein and Moeschberger (1997), Survival Analysis
A General-Purpose Package for Dynamic Report Generation in R
Nearest-neighbor Classification with Categorical Variables
Knockoff Filter for Controlling the False Discovery Rate
Tools for the provision of scientific fisheries management
advice
Knowledge discovery by accuracy maximization
A Genetic Algorithm for Fixed-Size Subset Selection
Functional Summary and Meta-Analysis of Gene Expression Data
Supervised and Unsupervised Self-Organising Maps
An Improved Evaluation of Kolmogorov's Distribution
Koul's Minimum Distance Estimation in Linear Regression and
Autoregression Model
Method for Clustering Partially Observed Data
Kriging-based Inversion for Deterministic and Noisy Computer
Experiments
Kernel-based Regularized Least squares (KRLS)
K-Sample Rank Tests and their Combinations
Identify Kinase Substrate Relationships Using Dynamic Data
Configurable function for solving families of nonlinear
equations
k-Top Scoring Pairs for Microarray Classification
Datasets and functions from the (now non-existing) Faculty of
Life Sciences, University of Copenhagen
Calculation of Groundwater Mounding Beneath an Infiltration
Basin
Utility Functions by Youyi, Krisz and Others
Kolmogorov-Zurbenko Fourier Transform and Applications
Kolmogorov-Zurbenko Spatial Smoothing and Applications
l2boost - Friedman's boosting algorithm for regularized linear
regression
Ordination and Multivariate Analysis for Ecology
Relabelling MCMC Outputs of Mixture Models
Convert labels or tables to a dendrogram
Libreria Del Laboratorio Di Statistica Con R
Data Sets for the Book "Experimental Design for Laboratory
Biologists"
Estimation of indicators on social exclusion and poverty
Duncan test, Tukey test and Scott-Knott test
Local Approximate Gaussian Process Regression
Tools for the Analysis of Ecosystem Metabolism
Lake Temperatures Collected by Situ and Satellite Methods from
1985-2009
Collection of Internal Consistency Reliability Coefficients
Modeling Data with Functional Programming
Tools for Modeling Data with Functional Programming
Probabilistic Models to Analyze and Gaussianize Heavy-Tailed,
Skewed Data
Liquid Association for Network Dynamics Detection
Landmark Estimation of Survival and Treatment Effect
Landmark Prediction of a Survival Outcome
Radiometric and topographic correction of satellite imagery
Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or
Temperature
Langevin Analysis in One and Two Dimensions
Data sets and functions with "Analyzing Linguistic Data: A
practical introduction to statistics"
Laplace Deconvolution with Noisy Discrete Non-Equally Spaced
Observations on a Finite Time Interval
Local Average Response Functions for Instrumental Variable
Estimation of Treatment Effects
Least Angle Regression, Lasso and Forward Stagewise
Likelihood Analysis of Speciation/Extinction Rates from
Phylogenies
High-Dimensional Inference with the Penalized Score Test
L1 regularized regression (Lasso) solver using the Cyclic
Coordinate Descent algorithm aka Lasso Shooting
Draws Diagrams Useful for Checking Latent Scales
Latent Position and Cluster Models for Statistical Networks
Functions to Calculate Common Laterality Statistics in
Primatology
Density estimation and nonparametric regression on irregular
regions
Extra Graphical Utilities Based on Lattice
Multiresolution Kriging Based on Markov Random Fields
Complex Survey Structural Equation Modeling (SEM)
Client for 'Turfjs' for 'Geospatial' Analysis
Tools for Biostatistics, Public Policy, and Law
Latent Budget Analysis for Compositional Data
Limited Memory BFGS Minimizer with Bounds on Parameters
Length-biased correction to survival curve estimation
Latent Class Analysis (LCA) with familial dependence in extended
pedigrees
Data sets for package ``LMERConvenienceFunctions''
Extended Mixed Models Using Latent Classes and Latent Processes
Local Correlation, Spatial Inequalities, Geographically Weighted
Regression and Other Tools
Collapsed Gibbs Sampling Methods for Topic Models
Multivariate Condition Matching by Backwards Elimination Using
Linear Discriminant Analysis
Interactive Visualization of Topic Models
Lan-DeMets Method for Group Sequential Boundaries
Linkage disequilibrium corrected by the structure and the
relatedness
Graphical display of pairwise linkage disequilibria between SNPs
LD LASSO Regression for SNP Association Study
Finding Locally D-optimal optimal designs for some nonlinear and
generalized linear models
Methods for likelihood-based dimension reduction in regression
Exact tests for Linkage Disequilibrium and Hardy-Weinberg
Equilibrium
Analysis and Visualization of Plant Leaf Angle Distributions
Rapid Digital Image Analysis of Leaf Area
Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
Interactive Web-Maps Based on the Leaflet JavaScript Library
Likelihood Estimation of Admixture in Parents From Offspring
Genotypes
latent effect adjustment after primary projection
Functions for Learning Bayesian Inference
Data and functions to accompany the book "Learning R"
An Interactive Environment for Learning Statistics
Phylogenetic and Functional Analyses for Ecology
Functions and datasets to accompany the book "Le logiciel R:
Maitriser le langage, Effectuer des analyses statistiques"
(french)
Tools for Data Handling and Analysis in Macroecology
Utilities for Formatting Strings with Consistent Capitalization,
Word Breaks and White Space
Plot Lexis Diagrams for Demographic Purposes
Estimation of the Local False Discovery Rates by Type II Maximum
Likelihood Estimation
Calculation of Low Flow Statistics for Daily Stream Flow Data
Tools for linear grouping analysis (LGA)
Simulation and Estimation of Log-GARCH Models
Tests for Genetic Association/Gene-Environment Interaction in
Longitudinal Gene-Environment-Wide Interaction Studies
Set-Based Tests for Genetic Association in Longitudinal Studies
A set of methods for longitudinal data objects
Computational Routines for Proton and Ion Radiotherapy
Linear Predictive Models Based on the LIBLINEAR C/C++ Library
Linear Classification with Online Adaptation of Coordinate
Frequencies
Linearized Bregman Algorithms for Generalized Linear Models
Light Cone Reconstruction of States - Predictive State
Estimation From Spatio-Temporal Data
Sensitivity Analysis for Case Weight in Normal Linear Regression
Financial and Actuarial Mathematics for Life Contingencies
Two-Parameter HMD Model Life Table System
Compute the Top Decile Lift and Plot the Lift Curve
Tools for Communication with Lightning-Viz Server
Implementation of the 'Lights Out' Puzzle Game
Methods for Maximum Likelihood Estimation
Functions to Analyze and Visualize Likert Type Items
Linear Inverse Model examples and solution methods
Jitter/CI Plot with Ordered Points Below the Limit of Detection
Binning and Plotting of Linearly Referenced Data
Static Univariate Frequentist and Bayesian Linear Calibration
Functions to Explore L-Systems (Lindenmayer Systems)
Minimum Distance Estimation in Linear Regression Model
Tools for Generating, Visualizing, and Analysing Link
Communities in Networks
Linkage information based genotype imputation method
Interactive Interpretation of Linear Regression Models
Manipulation of Linear Systems of (in)Equalities
Fitting lasso penalised additive isotone models
Statistical Methods for the Item Count Technique and List
Experiment
Tests of independence based on the Longest Increasing
Subsequence
Leveraging Learning to Automatically Manage Algorithms
Local Log-linear Models for Capture-Recapture
Add Standardized Regression Coefficients to lm-Objects
Linear Mixed-Effects Models using 'Eigen' and S4
Linear Mixed-Effects Models with Censored Responses
Compute the Personalized Activity Index Based on a Negative
Binomial Model
Compute the Personalized Activity Index Based on a Flexible
Bayesian Negative Binomial Model
Linear Mixed Effects Models with Non-Stationary Stochastic
Processes
Model Selection and Post-hoc Analysis for (G)LMER Models
Add smoothing spline modelling capability to nlme
Latent Markov Models with and without Covariates
Testing for a subset of variance components in linear mixed
models
Functions for estimation and inference of selection in
age-structured populations
Linear Mixed Effect Model Splines for Modelling and Analysis of
Time Course Data
L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Regional frequency analysis using L-moments
Predicting Modulator and Functional/Survival Analysis
Functions for Performing Local FDR Estimation when Null and
Alternative are Poisson
Local Regression, Likelihood and Density Estimation
Test of Stationarity and Localized Autocovariance
Datasets for "Statistics: UnLocking the Power of Data"
Datasets for 'Statistics: Unlocking the Power of Data'
Genome-Wide Association Analysis of a Biomarker Accounting for
Limit of Detection
A simple logging system for R, based on log4j
Relative Risk Regression Using the Log-Binomial Model
Log-concave Density Estimation in Arbitrary Dimensions
Maximum likelihood estimation of a log-concave density based on
censored data
Estimate a Log-Concave Probability Density from iid Observations
Compute MLE of Log-Concave Density on R with Fixed Mode, and
Perform Inference for the Mode
Estimate a Log-Concave Probability Mass Function from Discrete
i.i.d. Observations
CoxPH Model with Log Concave Baseline Distribution
LOGICOIL: multi-state prediction of coiled-coil oligomeric
state
Firth's bias reduced logistic regression
Diagnostic Tests for Models with a Binomial Response
Functions, Data and Code for Binary and Binomial Data
Fitting l2-regularized logit choice models via generalized
gradient descent
Infer network based on binary arrays using regularized logistic
regression
Functions for the logitnormal distribution
Double log normal distribution functions
Log-Multiplicative Models, Including Association Models
Logrank Test for Aggregated Survival Data
Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Package for Plotting Categorical Longitudinal and Time-Series
Data
Model-Based Clustering and Classification for Longitudinal Data
Statistics for Long-Memory Processes (Jan Beran) -- Data and
Functions
Sample size calculations for longitudinal data
Expand Short URLs Using the 'LongURL' API
Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
loop decomposition of weighted directed graphs for life cycle
analysis, providing flexbile network plotting methods, and
analyzing food chain properties in ecology
A Collection of Tools to Conduct Levins' Loop Analysis
Uses an Archive to Amend Previous Stages of a Pipe using Current
Output
Logistic Ordinal Regression Differential Item Functioning using
IRT
LOw Rand and sparsE Covariance matrix estimation
Missing morphometric data simulation and estimation
Runs Lotka's Law which is One of the Special Applications of
Zipf's Law
Lassoed principal components for testing significance of
features
Local polynomial estimators of intensity function or its
derivatives
Linear Parametric Models Applied to Hydrological Series
Local Polynomial Estimator in Measurement Error Models
Merging linkage maps by linear programming
Modeler for linear programs (LP) and mixed integer linear
programs (MILP)
Linear Predictor Score, for Binary Inference from Multiple
Continuous Variables
Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
R Interface to 'lp_solve' Version 5.5.2.0
Learned Pattern Similarity and Representation for Time Series
LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series
Modelling
Dose Response Signal Detection under Model Uncertainty
Sources an R "Module" with Caching & Encapsulation, Returning
Exported Vars
Different types of estimators to deal with multicollinearity
A Likelihood Ratio Test Accounting for Genetic Heterogeneity
Locally stationary two-dimensional wavelet process estimation
scheme
A Multiscale Test of Spatial Stationarity for LS2W processes
Applied Latent Semantic Analysis (LSA) Functions
Least-Squares Bilinear Clustering for Three-Way Data
Local Statistical Complexity - Automatic Pattern Discovery in
Spatio-Temporal Data
Solving Least Squares Problems under Equality/Inequality
Constraints
American options pricing with Least Squares Monte Carlo method
Companion to "Learning Statistics with R"
the accelerated failure time model to right censored data based
on least-squares principle
Simulation-Based Bayesian Inference for Latent Traits of Item
Response Models
Longitudinal Targeted Maximum Likelihood Estimation
LTPD and AOQL Plans for Acceptance Sampling Inspection by
Variables
Ridge and Liu Estimates based on LTS (Least Trimmed Squares)
Method
Likelihood inference from case-control data Under Covariate
Assumptions (LUCA)
Printing Floating Point Numbers in a Human-Friendly Format
Comprehensive Luminescence Dating Data Analysis
Lunar Phase & Distance, Seasons and Other Environmental Factors
A Latent Variable Model for Mixed Continuous and Ordinal
Responses
An Automated Approach to Evaluating Dose-Effect Experiments
Following Litchfield and Wilcoxon (1949)
Accurate Estimation of Clonal Coincidences and Abundances from
Biological Replicates
Data from the M4 Time Series Forecasting Competition
Binary and Multiclass Boosting Algorithms
Machina Time Series Generation and Backtesting
Class prediction based on microarray data and clinical
parameters
Automatic Differentiation of Multivariate Operations
A Flexible Microarray Data Simulation Model
Data Class and Tools for Handling Spatial-Temporal Data
Pretty Scientific Plotting with Minor-Tick and log Minor-Tick
Support
A Graphical User Interface for Microarray Data Analysis
Creates an empty package framework for the LCFD format
Quantitative Analysis of Mass Spectrometry Data
A wrapper around the Java machine learning tool MALLET
Calculation of Minimum Averaged Mean Squared Error (MAMSE)
weights
Matrix Analysis and Normalization by Concordant Information
Enhancement
Access and Process Data and Documents of the Manifesto Project
Manly Mixture Modeling and Model-Based Clustering
Multiple testing procedures of Cox (2011) and Wang and Cox
(2007)
Mapping Markers to the Nearest Genomic Feature
Mapping Smoothed Effect Estimates from Individual-Level Data
Geographic Display of Survey Data Statistics
Tools for Reading and Handling Spatial Objects
Mapping, pruning, and graphing tree models
Interactive Viewing of Spatial Objects in R
Multivariate Autoregressive Modeling for Analysis of Community
Time-Series Data
Multiplicative AR(1) with Seasonal Processes
Estimation of Meiotic Recombination Rates Using Marey Maps
Approximate marginal inference for regression-scale models
Mark-Recapture Analysis for Survival and Abundance Estimation
Markov Chain Models for Phylogenetic Trees
Easy Handling Discrete Time Markov Chains
Statistical Significance of the Markowitz Portfolio
Multivariate Analysis Based on Relative Likelihoods
Import, Plot and Analyze Bathymetric and Topographic Data
An algorithm for least-squares curve fitting
Mandallaz' Model-Assisted Small Area Estimators
Support Functions and Datasets for Venables and Ripley's MASS
Body Mass Estimation Equations for Vertebrates
ML and MCMC Methods for Pedigree Reconstruction and Analysis
Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
Multivariate and Propensity Score Matching with Balance
Optimization
Computation of the Balance - Sample Size Frontier in Matching
Methods for Causal Inference
MatchIt: Nonparametric Preprocessing for Parametric Casual
Inference
Combining Matching and Linear Regression for Causal Inference
Optimal Multilevel Matching using a Network Algorithm
A Code Converter from the Matlab/Octave Language to R
Tools to Assess Mating Potential in Space and Time
Measuring Association and Testing Independence Efficiently
An Interface for MATLAB using System Calls
Matrix Functions for Teaching and Learning Linear Algebra and
Multivariate Statistics
Sparse and Dense Matrix Classes and Methods
Collection of functions for matrix calculations
Matrix eQTL: Ultra fast eQTL analysis via large matrix
operations
Modelling with Sparse And Dense Matrices
Matrix-Based Partial Least Squares Estimation
Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Data.frame-Like Operations on Sparse and Dense Matrix Objects
Modern Calibration Functions for the Modern Analog Technique
(MAT)
Three methods to identify differentially expressed gene sets,
ordinary least square test, Multivariate Analysis Of Variance
test with n contrasts and Random forest
Exact max-type Cochran-Armitage trend test(CATT)
Low-memory Multinomial Logistic Regression with Support for Text
Classification
Selecting the Best Set of Relevant Environmental Variables along
with the Optimal Regularization Multiplier for Maxent Niche
Modeling
Maximum Likelihood Estimation and Related Tools
Model species distributions by estimating the probability of
occurrence using presence-only data
Mazama Science Spatial Data Download and Utility Functions
Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and
Destruction Rate Modelling
Moment-Based Estimation for Hierarchical Models
Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
Model Based Multifactor Dimensionality Reduction
Access Data from the Massachusetts Bay Transit Authority (MBTA)
Web API
Multivariate Bayesian Variable Selection Method Exploiting
Dependence among Outcomes
Tools for Two-Dimensional Monte-Carlo Simulations
Translates information from netcdf files with MC2 output into
inter-PVT transitions
Matrix Computation Based Identification Of Prime Implicants
Functions to Support the Multicriteria Decision Aiding Process
Maximum Likelihood Estimation for Generalized Linear Mixed
Models
Machine Coded Genetic Algorithms for Real-Valued Optimization
Problems
Warnes and Raftery's MCGibbsit MCMC diagnostic
Global optimization using Monte Carlo and Quasi Monte Carlo
simulation
Monte Carlo hypothesis tests with Sequential Stopping
Multiplicative Competitive Interaction (MCI) Model
IRT models for multiple choice items (mcIRT)
Gaussian Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Posterior Distribution of Extreme Value Models in R
Bayesian Analysis of Multivariate Counts Data in DNA
Metabarcoding and Ecology
Multiple Criteria Optimization Algorithms and Related Functions
Conjoint Analysis through Averaging of Multiple Analyses
Multiple Comparisons Using Normal Approximation
A Simplified Interface for Running Commands on Parallel
Processes
A Monte Carlo permutation method for multiple test correlation
Design and Analysis of Dose-Finding Studies (see also
DoseFinding package)
Functions for Monte Carlo Methods with R
Selecting Bandwidth for Kernel Density Estimator with Minimum
Distance Method
Mixture and Flexible Discriminant Analysis
Multivariate Data Analysis for Chemometrics
Measuring the Difference Between Two Empirical Distributions
Multivariate Double Hierarchical Generalized Linear Models
Multi-Dimensional MA Normalization for Plate Effect
Detect gene-gene interactions using multifactor dimensionality
reduction
Improved Score Tests for Generalized Linear Models
Functions for Analysis of Data with General Recognition Theory
Detection and Control of Tree-Ring Widths on Scanned Image
Sections
Maximum Entropy Bootstrap for Time Series
Bayesian Methods for Identifying the Most Harmful Medication
Errors
Flexible Mediation Analysis Using Natural Effect Models
Medical Risk and Comorbidity Tools for ICD-9-CM Data
A max-margin supervised Sparse Topical Coding Model
Multivariate Data Handling in Ecology and Biogeography
Multivariate Data Handling with S4 Classes and Sparse Matrices
Interactive model exploration using GGobi
Spatial pattern detection in genetic distance data using Moran's
Eigenvector Maps
Tools for Management of Survey Data and the Presentation of
Analysis Results
Data sets from Mixed-effects Models in S
Tools for Analyzing Mixed Effect Regression Models
Meta-Analysis for Diagnostic Test Studies
Meta-analysis of genome-wide SNP association results
Probabilistic latent variable models for metabolomic data
Analysis of the "Elements of Metacommunity Structure"
Evaluate Periodicity in Large Scale Data
MetaDE: Microarray meta-analysis for differentially expressed
gene detection
Metapopulation simulations for conserving salmon through
portfolio optimization
Fused Lasso Approach in Regression Coefficient Clustering
Comprehensive Research Synthesis Tools for Systematic Reviews
and Meta-Analysis
Inference in Meta Analysis and Meta Regression
Metaheuristic Optimization Framework for Preprocessing
Combinations
Landscape and Range Expansion Simulation
Likelihood Inference in Meta-Analysis and Meta-Regression Models
Diagnostic and prognostic meta analysis (metamisc)
Bayesian Mixture Analysis for Metagenomic Community Profiling
Meta-Analysis of Studies with Non Statistically-Significant
Unreported Effects
Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)
MetaPCA: Meta-analysis in the Dimension Reduction of Genomic
data
MetaQC: Objective Quality Control and Inclusion/Exclusion
Criteria for Genomic Meta-Analysis
Meta-Analysis using Structural Equation Modeling
Advanced Statistical Methods to Model and Adjust for Bias in
Meta-Analysis
Meta Analysis for SNP-Set (Sequence) Kernel Association Test
Meta-analysis for Classification Data and Correction to
Imperfect Reference
Spatio-Temporal Analysis and Mapping of Meteorological
Observations
Fitting and Plotting Tools for the Maximum Entropy Theory of
Ecology (METE)
Meth27QC: sample quality analysis, and sample control analysis
Functions for Analysis of Agreement in Method Comparison Studies
Detection of Differentially Methylated Regions using
MethylCap-Seq Data
Statistical Methods for Normalizing Metabolomics Data
Create Interactive Charts with the JavaScript 'MetricsGraphics'
Library
Test Metric and Null Model Statistical Performance
GUI Tool for Estimating Sample Sizes for Metabolomic Experiments
A Fixed Memeory Moving Expanding Window Average
Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR)
Processes
Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness
Estimation
Structural Pursuit Over Multiple Undirected Graphs
Multivariate Response Generalized Linear Models
Model Averaging for Multivariate GLM with Null Models
mgpd: Functions for multivariate generalized Pareto distribution
(MGPD of Type II)
Graphing map attributes and non-map variables in R
API Client for the MG-RAST Server of the US DOE KBase
Gene set analysis based on GSZ-scoring function and asymptotic
p-value
General Markov Chain Monte Carlo for Bayesian Inference using
adaptive Metropolis-Hastings sampling
Minimum Hellinger Distance Test for Normality
Inference for Hidden Markov and Semi-Markov Models
Multiple Hypothesis Testing for Variable Selection in
High-Dimensional Linear Models
Bayesian Model Selection in Logistic Regression for the
Detection of Adverse Drug Reactions
Missing Data Imputation and Model Checking
Multivariate Imputation by Chained Equations
Some Additional Multiple Imputation Functions, Especially for
'mice'
Demand Analysis with the Almost Ideal Demand System (AIDS)
Analysis with the Constant Elasticity of Substitution (CES)
function
Symmetric Normalized Quadratic Profit Function
Promotion Time Cure Model with Mis-Measured Covariates
Utilities for Official Spanish Microdata
Multiple Imputation by Distance Aided Donor Selection
Multiple Comparisons Procedures Based on Studentized Midrange
and Range Distributions
Implementing dispersal into species distribution models
Methods for the Indirect Estimation of Bilateral Migration
Graphical User Interface to the 'mi' Package
Multiple Imputation for Interval Censored Data
Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
MIcrosimulation Lung Cancer (MILC) model
Mixture summary method for multiple imputation
Data sets included in Utts and Heckard's Mind on Statistics
Maximal Information-Based Nonparametric Exploration R Package
for Variable Analysis
Implementation of the Well-Known Game to Clear Bombs from a
Given Field (Matrix)
Create a Mini Version of CRAN Containing Only Selected Packages
R Interface to the Levenberg-Marquardt Nonlinear Least-Squares
Algorithm Found in MINPACK, Plus Support for Bounds
Gene region-level testing procedure for SNP data, using the min
P test resampling approach
Derivative-free optimization algorithms by quadratic
approximation
An R Package for Linear Mixed Model Analyses
MINimal VALidation for Stoichiometric Reactions
Multidimensional Iterative Proportional Fitting and Alternative
Models
Mutant Identification through Probabilistic High throughput
Enabled NOrmalization
Computerized Adaptive Testing with Multidimensional Item
Response Theory
Microbiome Based Sum of Powered Score (MiSPU) Tests
'Correctly Analyse Disease Recurrence with Missing at Risk
Information using Population Mortality'
Nonparametric Missing Value Imputation using Random Forest
Handling Missing Values with Multivariate Data Analysis
Testing Homoscedasticity, Multivariate Normality, and Missing
Completely at Random
Mixed effects Score Test for continuous outcomes
Data Sets, Functions and Examples from the Book: "Modern
Industrial Statistics" by Kenett, Zacks and Amberti
Methods in Structural Reliability Analysis
Mixture of Student t Distributions using Importance Sampling and
Expectation Maximization
Tools for Multiple Imputation in Multilevel Modeling
Tools for multiple imputation of missing data
Estimation/Multiple Imputation for Mixed Categorical and
Continuous Data
Multivariate Normal Mixture Models and Mixtures of Generalized
Linear Mixed Models Including Model Based Clustering
Mixed effects cumulative link and logistic regression models
Missing Data Imputation for Continuous and Categorical Data
using Nonparametric Bayesian Joint Models
Tools for Discrete Multivariate Mixed Membership Models
Design and Analysis of Mixture Experiments
Evaluation of the FIM in NLMEMs using MCMC
Model Based Clustering, Classification and Discriminant Analysis
Using the Mixture of Generalized Hyperbolic Distributions
Mixed Model ANOVA and Statistics for Education
Functions to fit mixtures of regressions
A Random-Forest-Based Approach for Imputing Clustered Incomplete
Data
Forensic Genetics DNA Mixture Separation
Simulating Data to Study Performance of Clustering Algorithms
Fitting Finite Mixture of Scale Mixture of Skew-Normal
Distributions
DE Analysis of RNA-Seq Data by Mixtures of NB
Tools for Analyzing Finite Mixture Models
Curve Fitting and Mixture Toxicity Assessment
Mixture Models for Clustering and Classification
Multi-species sIZE spectrum modelling in R
2D and 3D movement-based kernel density estimates (MKDEs)
Routines for Fitting Kinetic Models with One or More State
Variables to Chemical Degradation Data
Efficient multi-level k-circulant supersaturated designs
Latent Class Item Response Theory (LC-IRT) Models under
Within-Item Multidimensionality
Machine Learning-based Differential Network Analysis of
Transcriptome Data
Exploratory Data Analysis and Manipulation of Multi-Label Data
Sets
R Ultimate Multilabel Dataset Repository
Machine learning algorithms with unified interface and confusion
matrices
Computation of the MLE for bivariate (interval) censored data
Maximum Likelihood Estimates of Gaussian Processes
Independent Component Analysis using Maximum Likelihood
ML estimation under multivariate linear mixed models with
missing values
Examples from Multilevel Modelling Software Review
Bayesian Model Averaging for Multinomial Logit Models
A package for Multilinear Regression Model Population Analysis
Use the MLS Junk Generator Algorithm to Generate a Stream of
Pseudo-Random Numbers
Most Likely Transformations: Documentation and Regression Tests
Single-Sample Classifier of Medulloblastoma Subtypes for
Medulloblastoma Patient Samples, Mouse Models, and Cell Lines
Gene Expression Datasets for the 'MM2S' Package
Mathematical Morphology in Any Number of Dimensions
Estimation of Multinormal Mixture Distribution
an R package for analyzing multivariate longitudinal data with
multivariate marginal models
Multivariate marginal models with shared regression parameters
Multi-Marker Molecular Signature for Treatment-specific Subgroup
Identification
Modern Measures of Population Differentiation
Various Similarity and Distance Metrics for Marked Point
Processes
Markov Modulated Poisson Process for Unsupervised Event
Detection in Time Series of Counts
Model-Based Clustering and Classification with Mixtures of
Modified t Factor Analyzers
Convert Dates to MMWR Day, Week, and Year
Multivariate Nonparametric Methods. An Approach Based on Spatial
Signs and Ranks
Multivariate Normal Distributions with Power Integrand
The Multivariate Normal and t Distributions
R Package for Fitting the Multinomial Probit Model
Multi-objective optimization for collecting cluster alternatives
Multiscale Analysis for Density Functions
Model-free estimation of a psychometric function
Modeling and Map Production using Random Forest and Stochastic
Gradient Boosting
A Model Object Framework for Regression Analysis
Tools and Classes for Statistical Models
Find the Modes and Assess the Modality of Complex and Mixture
Distributions, Especially with Big Datasets
R tools for processing Level 2 Cloud Mask products from MODIS
Community Structure Detection via Modularity Maximization
Modelling temperature effects using time series data
Multiobjective Genetic Algorithm for Variable Selection in
Regression
Dental Surface Complexity Measurement Tools
Moment-Matching Methods for Weighted Sums of Chi-Squared Random
Variables
Moments, cumulants, skewness, kurtosis and related tests
A Simple Graphical Representation of the Relative Occurrence and
Co-Occurrence of Events
Monotone Multi-Layer Perceptron Neural Network
Geometric Morphometric Analysis of Monogenean Anchors
Estimation for Multivariate Normal and Student-t Data with
Monotone Missingness
Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups
in a Phylogeny
Functions and Datasets for the Book by Keon-Woong Moon
MOPSOCD: Multi-objective Particle Swarm Optimization with
Crowding Distance
Check Time Homogeneity and Markov Chain Order
Color schemes compatible with red-green color perception
difficulties
Calculations and Visualisations Related to Geometric
Morphometrics
MOdelling Tools for Reproduction and Survival Data in
Ecotoxicology
Simple raw data generator based on user-specified summary
statistics
Smoothing and Forecasting Poisson Counts with P-Splines
Project MOSAIC Statistics and Mathematics Teaching Utilities
Project MOSAIC (mosaic-web.org) data sets
Learning Hybrid Bayesian Networks using Mixtures of Truncated
Basis Functions
Mountain Plots, Folded Empirical Cumulative Distribution Plots
Mouse-Tracking Measures from Trajectory Data
Visualizing and Analyzing Animal Track Data
Animal Movement Modelling using Hidden Markov Models
Mixtures of von Mises-Fisher Distributions
Multi-Patient Analysis of Genomic Markers
Multinomial Probit Bayesian Additive Regression Trees
Multivariate Process Capability Indices (MPCI)
Data sets and scripts for Modeling Psychophysical Data in R
The package can implement the network-based metabolite pathway
identification of pathways
Modified Profile Likelihood Estimation for Weibull Shape and
Regression Parameters
Graphical Model Stability and Variable Selection Procedures
Automating Mplus Model Estimation and Interpretation
Symbolic Computation and More with Multivariate Polynomials
Mposterior: R package for Robust and Scalable Bayes via a Median
of Subset Posterior Measures
Statistics for analysing multiple simultaneous point processes
on the real line
Modeling Phylogenetic Signals using Eigenvector Maps
Analyze Multinomial Processing Tree Models
Data Sets from Montgomery, Peck and Vining's Book
Metabolomic Quantitative Trait Locus Mapping
Inferences for ratios of coefficients in the general linear
model
Methods for Analyzing Multiple Response Categorical Variables
(MRCVs)
Fits regression models when the outcome is partially missing
Multi-Resolution Estimation of the Hazard Rate
Modified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted
Rand Index (1 and 2.1 and 2.2)
Management, Display, and Processing of Medical Imaging Data
An R package for conditional maximum likelihood estimation in
mixed Rasch models
Multilocus Random Mixed Linear Model for Genome-Wide Association
Study
Multivariate Regression Models for Reserving
R package for parallelized mRMR ensemble feature selection
Minimal Clinically Important Difference and Response Shift
Effect for Health-Related Quality of Life
Multi-Resolution Scanning for Cross-Sample Differences
Multinomial Response Models with Structured Penalties
A multiplicative-regression model for relative survival
Multiresolution time warping for functional data
Statistical analysis for Methylation-sensitive Amplification
Polymorphism data
Draw Diagrams (mis)Representing the Results of Mass Spec
Experiments
Multiscale Bernstein Polynomials for Densities
Markov-Switching, Bayesian, Vector Autoregression Models
Combine Data from Positive and Negative Ionization Mode Finding
Common Entities
Metabolite set enrichment analysis for factor loading in
principal component analysis
Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS)
data
Data and Functions for the Book Modern Statistical Graphics
High Dimensional Multiclass Classification Using Sparse Group
Lasso
A library to serialize or unserialize data in MessagePack format
Degrees of freedom of elastic net, adaptive lasso and
generalized elastic net
Assess Tumor Microsatellite Instability with a Decision Tree
Classifier from Exome Somatic Mutations
Improved Techniques to Estimate Trend, Velocity and Acceleration
from Sea Level Records
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions and Datasets for "Methods of Statistical Model
Estimation"
Datasets and Functions used in Multivariate Statistics: Old
School by John Marden
Morse-Smale Approximation, Regression and Visualization
Package for Calculation of ARMSS, Local MSSS and Global MSSS
Nonparametric Estimation for Multistate Models
Data Preparation, Estimation and Prediction in Multi-State
Models
Read Data from Delimited MTConnect Data Files
All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS)
and Estimating Multivariate Volatility Models
Multivariate time series data imputation
Munich Franz-Josef-Strauss Airport Pattern Analysis
Hazard Function Estimation in Survival Analysis
Exploring Data with Tree Data Structures
Optimal Allocation in Stratified Sampling
Simultaneous Inference in General Parametric Models
Multiple Equivalence Tests and Simultaneous Confidence Intervals
GEE Solver for Correlated Nominal or Ordinal Multinomial
Responses
Finite Difference Method for Multi-Asset Option Valuation
Quantitative Linkage Analysis Tools using the Variance
Components Approach
Multiple Copy Number Variation Detection
Permutations of Multisets in Cool-Lex Order
Read Fixed Width Format Files Containing Lines of Different Type
Multidimensional Latent Class Item Response Theory Models
Capture-Mark-Recapture Analysis using Multiple Non-Invasive
Marks
Meta-analysis of Multivariate Genome Wide Association Studies
Regression analysis of overdispersed correlated count data
Simultaneous confidence intervals for multinomial proportions
according to the method by Sison and Glaz
Robust Estimation of Overdispersed Multinomial Regression Models
Generation of multivariate ordinal variates
A Package to Test for Pleiotropic Effects
Variable Importance Analysis with Population Intervention Models
Weighted Cox-regression for Nested Case-Control Data
Algebraic Tools for the Analysis of Multiple Social Networks
Calculate Multivariate Richness via UTC and sUTC
Bias, Precision, and Power for Multi-Level Random Regressions
Clustering a Dataset using Multi-SOM Algorithm
MultiSV: an R package for identification of structural
variations in multiple populations based on whole genome
resequencing
Simultaneous manipulation of multiple arrays of data, with
data.list objects
Multivariate Random Forest for Linearly Related Output Features
Estimation of Multivariate Long-Memory Models Parameters
Common Multiple Testing Procedures and Gatekeeping Procedures
Metabolomics Univariate and Multivariate Analysis
Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
Murphy Diagrams for Forecast Comparisons
Conversion of Nuclear Magnetic Resonance spectrum in audio file
A Graphical User Interface for the MuToss Project
MultiClass Visualizable Classification using Combination of
Projections
An Introduction to Applied Multivariate Analysis with R
Statistical Methods for Analysing Multivariate Abundance Data
Modelling Multivariate Binary Data with Blocks of Specific
One-Factor Distribution
Workspace organization, code and documentation editing, package
prep and editing, etc
Multivariate Variance Components Tests for Multilevel Data
Wavelet analysis of multiple time series
Multivariate Generalized Linear Mixed Models for Ranking Sports
Teams
Influence Measures and Diagnostic Plots for Multivariate Linear
Models
Multivariate Meshes and Histograms in Arbitrary Dimensions
Multivariate and Univariate Meta-Analysis and Meta-Regression
Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Nelson-Aalen estimator of the cumulative hazard in multistate
models
Moving Grid Adjustment in Plant Breeding Field Trials
ML estimation for multivariate normal data with missing values
Normality test for multivariate variables
Generate New Multivariate Normal Samples from Permutations
Goodness of Fit Tests for Multivariate Normality
Multivariate outlier detection based on robust methods
Orthant Probability of the Multivariate Normal Distribution
Mean and Variance of Truncated Normal Distribution
Generalized Shapiro-Wilk test for multivariate normality
Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Estimation and Testing for the Multivariate t-Distribution
Causal Inference in Spatiotemporal Event Data
Multichannel Wavelet Deconvolution with Additive Long Memory
Noise
Efficient mixed-level k-circulant supersaturated designs
Integrative immunoinformatics for Mycobacterial diseases in R
platform
Automatic Correlation and Regression Test in a Data Frame
Interface to Myrrix. Myrrix is a complete, real-time, scalable
clustering and recommender system, evolved from Apache Mahout
External jars required for package Myrrix
Regression Models for Monozygotic Twin Data
Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low
Dimensions
Nondetects And Data Analysis for environmental data
Provide namespace managment functions not (yet) present in base
R
Tools for Nanoparticle Simulation and Calculation of PDF and
Total Scattering Structure Function
Normalize NanoString miRNA and mRNA Data
Performs the Processing and Normalisation of Nanostring miRNA
and mRNA Data
Collection of datasets from the ASA 2006 data expo
NeuroAnatomy Toolbox for Analysis of 3D Image Data
NeuroAnatomy Toolbox (nat) Extension for Assessing Neuron
Similarity and Clustering
NeuroAnatomy Toolbox ('nat') Extension for Handling Template
Brains
File System Utility Functions for 'NeuroAnatomy Toolbox'
Maximum Likelihood method in estimating effective population
size from genetic data
Determining the Best Number of Clusters in a Data Set
Vignette Engine Wrapping IPython Notebooks
NBD-Dirichlet Model of Consumer Buying Behavior for Marketing
Research
Functions for Optimal Non-Bipartite Matching
Negative Binomial Models for RNA-Sequencing Data
NCA Calculation and Population PK Model Diagnosis
Interface to Unidata netCDF (Version 4 or Earlier) Format Data
Files
Helper functions for use with the ncdf4 package
Miscellaneous Functions for Creating Adaptive Functions and
Scripts
Regularization Paths for SCAD and MCP Penalized Regression
Models
Calculating Effective Sizes Based on Known Demographic
Parameters of a Population
Estimating the Number of Essential Genes in a Genome
Access to the Neotoma Paleoecological Database Through R
Network Assisted Algorithm for Epigenetic Studies Using Mean and
Variance Combined Signals
Survival Analysis for Cohorts with Missing Covariate Information
Mann-Whitney-Wilcoxon Test for Nested Ranks
Inference of Species Associations from Co-Occurrence Data
netClass: An R Package for Network-Based Biomarker Discovery
Statistical Modeling with Network Cohesion
Network Analysis for Diffusion of Innovations
Network Generator for Combinatorial Graph Problems
Estimating network indices, including trophic structure of
foodwebs in R
Network Meta-Analysis using Frequentist Methods
Network Strengths and Weaknesses Analysis
Tools for using network reporting estimators
Simulate Bipartite Graphs with Fixed Marginals Through
Sequential Importance Sampling
Visualization and Analysis Tools for Neural Networks
Data Structures and Handling for Neuroimaging Data
Functions to Generate fMRI Data Including Activated Data, Noise
Data and Resting State Data
Computes Pdf, Cdf, Quantile and Random Numbers, Measures of
Inference for 19 General Families of Distributions
Parallel Analysis and Non Graphical Solutions to the Cattell
Scree Test
Numerical Formal Concept Analysis for Systematic Clustering
A Simple General Purpose N-Gram Tokenizer
Fitting the centered autologistic and sparse spatial generalized
linear mixed models for areal data
Data from the US National Health and Nutrition Examination Study
Non-hierarchical evolutionary multi-objective tree learner to
perform cost-sensitive classification
Compiling the NHL Real Time Scoring System Database for easy use
in R
Bayesian NHMM Modeling (Multiple Time Series)
Non-Homogeneous Markov Switching Autoregressive Models
Modelling and Validation of Non Homogeneous Poisson Processes
(Niche) (R)egion and Niche (Over)lap Metrics for
Multidimensional Ecological Niches
Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal
Testing
Nonlinear least squares examples from NIST
Fundamental Physical Constants and Unit Conversions from NIST
Noninferiority Tests with Variable Margins
Solve Nonlinear Optimization with Nonlinear Constraints
Linear and Nonlinear Mixed Effects Models
Non-linear mixed-effects modelling in nlme using differential
equations
Datasets and utility functions enhancing functionality of nlme
package
Functions for Nonlinear Least Squares Solutions
Nonlinear Network Reconstruction and Clustering Based on DCOL
(Distance Based on Conditional Ordered List)
Higher Order Inference for Nonlinear Heteroscedastic Models
Non-Linear Relative Risk Estimation and Plotting
Fitting Structural Equation Mixture Models
Nonlinear regression in predictive microbiology
Fitting nonlinear models with scale mixture of skew-normal
distributions
Utilities and Kinship Information for Research with the NLSY
A nondecimated lifting transform for signal denoising
Wald Test of Nonlinear Restrictions and Nonlinear CI
Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)
Numerical Methods and Optimization in Finance
Feed-Forward Neural Networks and Multinomial Log-Linear Models
Prediction Intervals of Multi-Layer Neural Networks
Non-Negative Lasso and Elastic Net Penalized Generalized Linear
Models
Fast and Versatile Non-Negative Matrix Factorization
The Lawson-Hanson algorithm for non-negative least squares
(NNLS)
Calculate Design Parameters for Biomarker Validation Studies
Node Harvest for Regression and Classification
Compares the Distribution of Sister Clades Through a Phylogeny
Implementation of the Natural and Orthogonal InterAction (NOIA)
model
Biplot representations of categorical data
U.S. Census Regional and Demographic Data
Causal Inference in the Presence of Treatment Noncompliance
Under the Binary Instrumental Variable Model
Nonparametric Methods for Measuring Efficiency and Productivity
Model Checking and Variable Selection in Nonparametric
Regression
Stratification and matching by the propensity score
Detecting Isotope, Adduct and Homologue Relations in LC-MS Data
Quantized simulation data of isotope pattern centroids
Normal (1-d) Mixture Models (S3 Classes and Methods)
Dataset for Climate Analysis with Data from the Nordic Region
Analysis of multivariate normal datasets with missing values
Routines for Exponential Power Distribution
Evaluates complex erf, erfc, Faddeeva, and density of sum of
Gaussian and Student's t
Generation of Multivariate Data with Arbitrary Marginals
Send push notifications to your smartphone via pushover.net
(ACCOUNT REQUIRED!)
NOVEL Integration of the Sample and Thresholded (NOVELIST)
Correlation and Covariance Estimators
Nonparametric kernel smoothing methods for mixed data types
Non-Parametric Measures of Actigraphy Data
Multiple Comparisons and Simultaneous Confidence Intervals
Nonparametric Analysis of Longitudinal Data in Factorial
Experiments
Non-Parametric Bayesian Multiple Imputation for Categorical Data
Nonparametric Combination of Hypothesis Tests
Nonparametric Methods for Cognitive Diagnosis
Some Nonparametric Tests for Change-Point Detection in Possibly
Multivariate Observations
Normalised prediction distribution errors for nonlinear
mixed-effect models
Sample Size Calculation for the Proportional Hazards Mixture
Cure Model
Nonparametric Interaction Tests for Factorial Designs with
Repeated Measures
Plotting linkage and association results
Type-Specific Failure Rate and Hazard Rate on Competing Risks
Data
Nonparametric maximum likelihood estimation for random effect
models
tertiary probabilistic model in predictive microbiology for use
in food manufacture
Nonparametric Comparison of Multivariate Samples
Nonparametric Partially-Balanced Incomplete Block Design
Analysis
Nonparametric Estimation of Regression Models with
Factor-by-Curve Interactions
Convenience Functions and Tests for Working With the Net
Promoter Score (NPS)
Nonparametric and Stochastic Efficiency and Productivity
Analysis
Nonparametric Smoothing for contaminated data using
Simulation-Extrapolation
Package for Nonparametric Statistical Methods using R
Generalization of Hewitt's Seasonality Test
Post-normalization of total copy numbers
Simulation and Estimation of the Neyman-Scott Type Spatial
Cluster Models
Elitist Non-dominated Sorting Genetic Algorithm based on R
Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Numeric Routines for Optically Stimulated Luminescence Dating
Audioscrobbler data for "R in a Nutshell"
R functions for NetWorkSpaces and Sleigh
Data about flights departing NYC in 2013
General Purpose 'Oai-PMH' Services Client
Multiple Sclerosis Lesion Segmentation using Magnetic Resonance
Imaging (MRI)
Outright Tool for the Analysis of Spatial Inequalities and
Segregation
Oblique Random Forests from Recursive Linear Model Splits
An R package to assess agreement between observers
Objective Bayesian Model Discrimination in Follow-Up Designs
Sensitivity analysis for Observational studies
Visualisation of Oceanographic Data and Model Output
Regression for Rank-Indexed Compositional Data
Open Document Databases (.odb) management
Support for odfWeave on the survey package
Estimation of Ordered Generalized Linear Models
Survival analysis supplement to OpenIntro guide
Multivariate Methods Based on the Oja Median and Related
Concepts
Retrieve Oklahoma Mesonet climatological data
filter the molecular descriptors for QSAR
Maximum likelihood tree models for oncogenesis
Planing, Monitoring and Evaluating Oncological Phase 2 Studies
Software for constructing genetic maps in experimental crosses:
full-sib, RILs, F2 and backcrosses
Efficient Authenticated Interaction with the O*NET API
Functions for Visualising Sets of Ontological Terms
Functions for Calculating Ontological Similarities
Opasnet Modelling Environment Utility Functions
Option Pricing and Estimation of Financial Models in R
Tools for the Analysis of Air Pollution Data
A System for Embedded Scientific Computing and Reproducible
Research with R
OpenIntro data sets and supplemental functions
Control number of OpenMP threads dynamically
Apache OpenNLP Jars and Basic English Language Models
Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Tools for Creating and Analysing Air Trajectory Data
Utilities for Working with R's Operators
Optimal Combinations of Diagnostic Tests Based on AUC
Estimation of optimal number of biomarkers for two-group
microarray based classifications at a given error tolerance
level for various classification rules
Determine Optimal Clustering Algorithm and Number of Clusters
Near-Optimal and Balanced Group-Sequential Designs for Clinical
Trials with Continuous Outcomes
Estimation of value and hedging strategy of call and put
options
Computing optimal cutpoints in diagnostic tests
R port of the Scilab optimsimplex module
A Replacement and Extension of the optim() Function
Optimal Two and Three Stage Designs for Single-Arm and Two-Arm
Randomized Controlled Trials with a Long-Term Binary Endpoint
Option Pricing with Efficient Simulation Algorithms
Simplifies and Automates Analyzing and Reporting OptiQuant's log
Data
Optimal Mixture Weights in Multiple Importance Sampling
Optimal Partitioning of Similarity Relations
Optimization Toolbox for solving linear systems
Convenient Tools for Working with Oracle Databases
Computation of Graphlet Orbit Counts in Sparse Graphs
Several confidence intervals for the odds ratio
Order Restricted Clustering for Microarray Experiments
Estimate procedure in case of first order autocorrelation
Modelling comparison data with ordinal response
Estimate parent distributions with data of several order
statistics
Ordered Lasso and Time-lag Sparse Regression
Least Squares, Logistic, and Cox-Regression with Ordered
Predictors
Ordinal Regression Analysis for Continuous Scales
Ordinal Regression for High-dimensional Data
Biplot representations of ordinal variables
Compute least squares estimates of one bounded or two ordered
isotonic regression curves
Concurrent Generation of Ordinal and Normal Data with Given
Correlation Matrix and Marginal Distributions
Selection and/or Smoothing of Ordinal Predictors
An R Interface to the Oniguruma Regular Expression Library
Connector to the Objective Revision Evaluation Service (ORES)
Analyse Text Files Created by Emacs' Org mode
Order-restricted Information Criterion-based Clustering
Algorithm
Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
The package deals with Operations Research LOCational Analysis
models
Rigorous - NIfTI + ANALYZE + AFNI : Input / Output
Order Restricted Assessment Of Microarray Titration Experiments
Southern Ocean Frontal Distributions (Orsi)
Converting Odds Ratio to Relative Risk in Cohort Studies with
Partial Data Information
Dynamic Panel Models with Orthogonal Reparameterization of Fixed
Effects
Collection of functions for orthogonal and orthonormal
polynomials
Orthogonal Signal Deconvolution for Spectra Deconvolution in
GC-MS and GCxGC-MS Data
Design and analysis of observational studies
Customisable Images of OpenStreetMap Data
Interface Between R and the OpenStreetMap-Based Routing Service
OSRM
Optimal Trees Ensembles for Regression, Classification and Class
Membership Probability Estimation
Variable Selection for Optimal Treatment Decision
North Temperate Lakes - Microbial Observatory 16S Time Series
Data and Functions
Ornstein-Uhlenbeck Models for Phylogenetic Comparative
Hypotheses
Bayesian Reconstruction of Disease Outbreaks by Combining
Epidemiologic and Genomic Data
Basic Tools for the Analysis of Disease Outbreaks
Outlier Detection using quantile regression for Censored Data
Outlier Detection for Multi-replicated High-throughput Data
Functions for Solving Multiple-criteria Decision-making Problems
Analysis of Evolutionary Rates in an OU Framework
Estimates of Coefficient of Overlapping for Animal Activity
Patterns
Estimation of Overlapping in Empirical Distributions
Processing of Oxy-Bisulfite Microarray Data
Plot the Australian Coastline and States
Posterior Predictive Checks of Coalescent Models
Performance Attribution for Equity Portfolios
Summarize Daily Physical Activity from 'activPAL' Accelerometer
Data
Pabon Lasso Graphs and Comparing Situations of a Unit in Two
Different Times
PAC-Bayesian Estimation and Prediction in Sparse Additive
Models
Track R Package Downloads from RStudio's CRAN Mirror
A few useful functions for statisticians
A Dependency Management System for Projects and their R Package
Dependencies
Procrustes Application to Cophylogenetic Analysis
Variational Bayes (VB) Approximation of Gibbs Posteriors with
Hinge Losses
Attributable Fraction Function for Censored Survival Data
Nonparametric Estimation of Preferential Attachment and Node
Fitness in Temporal Complex Networks
An API Client for Wikimedia Traffic Data
The package can identify the dysregulated KEGG pathways based on
global influence from the internal effect of pathways and
crosstalk between pathways
Pathway Analysis Methods for Genomewide Association Data
Confidence intervals for the ratio of locations and for the
ratio of scales of two paired samples
Visualization using Eulerian tours and Hamiltonian
decompositions
Rasch Model Parameters by Pairwise Algorithm
Confidence Intervals for Two Sample Comparisons
Significance Tests for Palaeoenvironmental Reconstructions
Download and Process Data from the Paleobiology Database
Analysis of Charcoal Records from the Global Charcoal Database
Paleontological and Phylogenetic Analyses of Evolution
Principal Axes Methods for Contingency Tables with Partition
Structures on Rows and Columns
Power Analysis for Random Effects in Mixed Models
Implementation of the Panel Data Approach Method for Program
Evaluation
Pam: prediction analysis for microarrays
Multiple Imputation for Multivariate Panel or Clustered Data
Benchmarking and Rescaling R2 using Noise Percentile Analysis
Preferential Attachment Based Common Neighbor Distribution
Derived Functional Associations
Estimation of Linear AR(1) Panel Data Models with
Cross-Sectional Heteroskedasticity and/or Correlation
Random Effects and/or Sample Selection Models for Panel Count
Data
A Toolbox for Writing Pretty Papers and Reports
Random Forest Classification with Parallel Computing
Automate parallelization of function calls by means of dynamic
code analysis
Unified Interface to Parallelization Back-Ends
Methods for combining independent subset Markov chain Monte
Carlo (MCMC) posterior samples to estimate a posterior density
given the full data set
A Parallel-Voting Algorithm for many Classifiers
Paralellised Versions of Constraint Based Causal Discovery
Algorithms
A Parallel-Voting Version of the Support-Vector-Machine
Algorithm
Helpers for Parameters in Black-Box Optimization, Tuning and
Machine Learning
Horn's Test of Principal Components/Factors
Regularized estimation of partial correlation matrices
Parallel implementation of the "segment" function of package
"DNAcopy"
Conduct the Parent-Offspring Test Using Monomorphic SNP Markers
Computing, Fitting and Validating the PPS Distribution
Parallelized functions for palaeoecological and
palaeogeographical analysis
Portfolio Allocation and Risk Management Applications
Parallel Mutual Information estimation for Gene Network
reconstruction
Recognize and Parse Dates in Various Formats, Including All ISO
8601 Formats
Partitioning Using Deletion, Substitution, and Addition Moves
Compute a distance metric between two partitions of a set
Periodic Autoregressive Time Series Models
Preprocessing of Aligned Sequences from HTS Analyses
Prediction and Stability Selection of Tuning Parameters
Package for Analysis of Space-Time Ecological Series
Phylogenetic Assembly with Soft Taxonomic Inferences
Probability and Statistics with R, Second Edition
Communication Between Editor and Viewer for Literate Programs
Classification using biological pathways as prior knowledge
Basic functions for drawing path diagrams
Pathmox Approach of Segmentation Trees in Partial Least Squares
Path Modeling
Class-focused pattern metric comparisons using simulation
Bayesian Experimental Design for Systems Biology
Perceptual Analysis, Visualization and Organization of Spectral
Color Data in R
Adding Progress Bar to '*apply' Functions
Protracted Birth-Death Model of Diversification
Programming with Big Data -- Base Wrappers for Distributed
Matrices
Programming with Big Data -- Demonstrations and Examples Using
'pbdR' Packages
Programming with Big Data -- Distributed Matrix Methods
Programming with Big Data -- Interface to MPI
Programming with Big Data -- Interface to Parallel Unidata
NetCDF4 Format Data Files
Programming with Big Data --- MPI Profiling Tools
Programming with Big Data -- Scalable Linear Algebra Packages
Programming with Big Data -- Interface to ZeroMQ
A Set of Datasets Used in My Classes or in the Book 'Modele
Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych'
Parametric Bootstrap and Kenward Roger Based Methods for Mixed
Model Comparison
Mapping Fisheries Data and Spatial Analysis Tools
GUI Tools Made Easy: Interact with Models and Explore Data
Segmenting Multiple Time Series by Contemporaneous Linear
Transformation
Create 2D Principal Component Plots with Bootstrapping
Principal Component Analysis for Outlier Detection
Methods for Graphical Models and Causal Inference
Semiparametric regression analysis of panel count data using
monotone splines
Principal Component of Explained Variance
Preconditioned Conjugate Gradient Algorithm for solving Ax=b
Piecewise Constant Hazards Models for Censored and Truncated
Data
Implementation of POSIXct work-alike for 365 and 360 day
calendars
IRT Models for Polytomous and Continuous Item Responses
Partial Correlation Coefficient with Information Theory
Principal Coordinates of Phylogenetic Structure
Calculate the probability of correct selection (PCS)
Panel-Corrected Standard Error Estimation in R
Cluster analysis via nonparametric density estimation
Fetch Economic and Financial Time Series Data from Public
Sources
Extract Text and Data from PDF Documents
Proximal/distal modeling framework for Pavlovian conditioning
phenomena
Panel Dynamic OLS Estimation of Cointegrating Vectors
PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher
Approximations
Panel Data Regression: Threshold Model and Unit Root Tests
Positive definite sparse covariance estimators
Periodogram Peaks in Correlated Time Series
Peak Picking Methods Inspired by Biological Data
Package for Periodic Autoregression Analysis
Maximum Likelihood Inference for the Pearson VII Distribution
with Shape Parameter 3/2
Independent component analysis using score functions from the
Pearson system
Prediction Error Curves for Risk Prediction Models in Survival
Analysis
Functions to facilitate power and sensitivity analyses for
genetic studies of natural populations
An implementation for association analysis with CNV data
Population and Evolutionary Genetics Analysis System
Geophysical Inverse Theory and Optimization
A Penalized EM algorithm incorporating missing-data mechanism
Portable Emissions (and Other Mobile) Measurement System
Utilities
L1 (lasso and fused lasso) and L2 (ridge) penalized estimation
in GLMs and in the Cox model
Penalized Classification using Fisher's Linear Discriminant
Feature Selection SVM using penalty functions
Flexible Copula Density Estimation with Penalized Hierarchical
B-Splines
Density Estimation with a Penalized Mixture Approach
Flexible Pair-Copula Estimation in D-Vines using Bivariate
Penalized Splines
Estimating Regularized Multi-state Models Using L1 Penalties
Simulation of high-dimensional data and parallelized repeated
penalized regression
Parallelised Estimation of Prediction Error
Insilico peptide mutation, digestion and homologous comparison
Evaluation of Diversity in Nucleotide Libraries
Calculate Indices and Theoretical Properties of Protein
Sequences
Using Percolation and Conductance to Find Information Flow
Certainty in a Direct Network
PerfMeas: Performance Measures for ranking and classification
tasks
Econometric tools for performance and risk analysis
An Infra-Structure for Performance Estimation of Predictive
Models
Permutational Algorithm to Simulate Survival Data
Permutation-Based Gene Expression Pathway Analyses
A Permutation Based Test for Biomarker Discovery in Microbiome
Data
Functions for Generating Restricted Permutations of Data
Resampling-based prediction error estimation for regression
models
Pictographic Representation of Treatment Effects
Permutation of Species During Turnover Events
Analysis of single serving and composite pesticide residue
measurements
Simulation and Reconstruction of PET Images
Phylogenetics for the Environmental Sciences
Penalized Generalized Estimating Equations in High-Dimension
Generalized Least Square in comparative Phylogenetics
Recursive method for construction of nested resolvable designs
and uniform designs associated
Discover Probable Duplicates in Plant Genetic Resources
Collections
Analysis of Large-Scale Pharmacogenomic Data
Pharmacometric Power calculations for mixed study designs
Phase Plane Analysis of One and Two Dimensional Autonomous ODE
Systems
Auxiliary Functions for Phenological Data Analysis
Auxiliary functions for phenological data processing, modelling
and result handling
Auxiliary functions for phenological data analysis
High-Throughput Generation of Genetic Markers and Maps from
Molecular Phenotypes for Crosses Between Inbred Strains
Tools to Manage a Parametric Function that Describes Phenology
Evaluation of the Proportional Hazards Assumption with a
Standardized Score Process
Proportional Hazards Mixed-effects Model (PHMM)
Convert Letters to Numbers and Back as on a Telephone Keypad
Tools for Phonetic and Acoustic Analyses
Waveband Definitions for UV, VIS, and IR Radiation
R Interface to Geochemical Modeling Software
Panel Data Analysis with Heterogeneous Time Trends
PhViD: an R package for PharmacoVigilance signal Detection
Run Phoenix NLME and Perform Post-Processing
Marks periods of sleep in Actigraph accelerometer data
An Extension (for Package 'SigTree') of Some of the Classes in
Package 'phylobase'
Base Package for Phylogenetic Structures and Comparative Data
Integrating Phylogenetics and Climatic Niche Modeling
Phylogenetic Comparative Methods for High-Dimensional Traits
Functions for Phylogenetically Based Statistical Analyses
Modelling Competitive Exclusion and Limited Dispersal in a
Statistical Phylogeographic Framework
Fast and Exact Algorithms for Computing Phylogenetic
Biodiversity Measures
Estimating Statistical Errors of Phylogenetic Metrics
Exploring the Phylogenetic Signal in Continuous Traits
Implements the Phylogenetic Regression of Grafen (1989)
Marks Periods of 'Bedrest' in Actigraph Accelerometer Data
Process Physical Activity Accelerometer Data
Calculate Physiological Characteristics of Adults and Children
A Fast, Flexible Tool for Sorting Phylogenetic Trees
Phylogenetic Tools for Comparative Biology (and Other Things)
Estimating the Proportion of True Null Hypotheses for FDR
R tools for integrating phylogenies and ecology
Pathwise Calibrated Sparse Shooting Algorithm
Self contained gene set analysis for gene- and
pathway-environment interaction analysis
Sequence ("Fasta"), Annotation ("Gff") and Variants ("Vcf") for
17 Samples of "P. Infestans" and 1 "P. Mirabilis"
Dual-Agent Dose Escalation for Phase I Trials using the PIPE
Design
Tools for Harnessing 'MLBAM' 'Gameday' Data and Visualizing
'pitchfx'
A Fast, Easy-to-use Tool for Manipulating Tables in Databases
and A Wrapper of MADlib
Tables so Beautifully Fine-Tuned You Will Believe It's Magic
Create Simple Packages Which Do not Upset R Package Checks
Model diagnostics for population pharmacokinetic models
Public Key Infrastucture for R Based on the X.509 Standard
A reporting pipeline for checking population pharmacokinetic
model assumption
Modelling and Analysis of Leaf Gas Exchange Data
Partially Linear Additive Quantile Regression
Dynamic Updating Methods for Player Ratings Estimation
A GUI to View, Design and Export Various Graphs of Data
Multiplicity control using Pooled LIS statistic
Additive partially linear models for differential gene
expression analysis
Polytomous logit-normit (graded logistic) model estimation
Multivariate Ordered Probit Model via Pairwise Likelihood
Plotting Multi-Dimensional Data - Using 'rgl'
Plot Spatial or Spatio-Temporal Data Over Google Maps
Visualization of Spatial and Spatio-Temporal Objects in Google
Earth
Create Interactive Web Graphics via 'plotly.js'
Plot Principal Component Histograms Around a Scatter Plot
Useful Networking Tools for Project Management
Creates an envelope that surrounds a set of points plotted in a
two dimensional space
Generate Useful ROC Curve Charts for Print and Interactive Use
Graphing Nonlinear Relations Among Latent Variables from
Structural Equation Mixture Models
Log Linear by Linear Association models and Rasch family models
by pseudolikelihood estimation
Statistical inference in partial linear regression models
Partial Least Squares and Principal Component Regression
Partial Least Squares (PLS) Data Analysis Methods
Degrees of Freedom and Statistical Inference for Partial Least
Squares Regression
Tools for Partial Least Squares Path Modeling (PLS-PM)
Partial Least Squares Regression for Beta Regression Models
Partial Least Squares Regression for Cox Models and Related
Techniques
Partial Least Squares Regression for Generalized Linear Models
Variable Selection in Partial Least Squares
Tools for Splitting, Applying and Combining Data
Parallel Model-Based Clustering using
Expectation-Gathering-Maximization Algorithm for Finite Mixture
Gaussian Model
Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Minimal Working Examples for Particle Metropolis-Hastings
Transforms Input Data from a PMML Perspective
Probit-Normal Marginalized Transition Random Effects Models
Dose Finding in Drug Combination Phase I Trials Using PO-CRM
Bayesian Variable Selection for a Poisson-Logistic Model
PogromcyDanych / DataCrunchers is the Masive Online Open Course
that Brings R and Statistics to the People
Classification and clustering of sequencing data based on a
Poisson model
Poisson lognormal and bivariate Poisson lognormal distribution
Analyzing Pointer Years and Components of Resilience
Data Generation with Poisson, Binary and Continuous Components
Data Generation with Poisson, Binary and Ordinal Components
Generation of up to Four Different Types of Variables
Data Generation with Poisson, Binary, Ordinal and Normal
Components
Confidence Intervals with Poisson Double Sampling
Simultaneous Generation of Count and Continuous Data
Simultaneous generation of multivariate data with Poisson and
normal marginals
Simulating Homogenous & Non-Homogenous Poisson Processes
Fit high dimensional mixtures of Poisson GLMs
Significance analysis of sequencing data based on a Poisson log
linear model
Polytomous variable Latent Class Analysis
Implementation of the Polya-Aeppli distribution
Sensitivity Indexes Calculated from Polynomial Chaos Expansions
Bayesian Population Genomics in Autopolyploids
A Collection of Functions to Implement a Class for Univariate
Polynomial Manipulations
Paternity Exclusion in Autopolyploid Species
Tools for Polyploid Microsatellite Analysis
Simulate and test marker dosage for dominant markers in
autopolyploids
Bayesian mixture models for marker dosage in autopolyploids
Bootstrapped Basis Regression with Oracle Model Selection
Statistical Inference for Partially Observed Markov Processes
Construction and Analysis of Matrix Population Models
Provides Tools For Demographic Modelling Using Projection
Matrices
Population (and Individual) Optimal Experimental Design
Functions for Epidemiological Analysis using Population Data
Useful functions for (batch) file conversion and data resampling
in microsatellite datasets
An Efficient Swiss Army Knife for Population Genomic Analyses
A Simple Framework to Analyse Population Genetic Data
This is an R package that constructs and manipulates population
graphs
For interval estimation of mean of selected populations
Tools for Simplifying the Population and Querying of SQLite
Databases
Genetic Analysis of Populations with Mixed Reproduction
popRange: A spatially and temporally explicit forward genetic
simulator
Reconstruct Human Populations of the Recent Past
Routines for Constructing and Evaluating Self-Organizing Maps
Genomic Breeding Tools: Genetic Variance Prediction and
Cross-Validation
Portmanteau Tests for Univariate and Multivariate Time Series
Models
Portfolio Analysis, Including Numerical Methods for Optimization
of Portfolios
High Frequency Price Estimators by PortfolioEffect
High Frequency Portfolio Analytics by PortfolioEffect
Framework for simulating equity portfolio strategies
Markov Chain Monte Carlo for Potts Models
Computation of Power and Level Tables for Hypothesis Tests
Power and Sample-Size Distribution of 2-Stage Bioequivalence
Studies
Power Calculations for GxE and GxG Interactions for GWAS
Power/Sample Size Calculation for Mediation Analysis
Power analyses for the affected sib pair and the TDT design
Power and Sample Size Calculation for Survival Analysis of
Epidemiological Studies
Power and Sample Size Based on Two One-Sided t-Tests (TOST) for
(Bio)Equivalence Studies
Partial and Semi-Partial (Part) Correlation
Predict Protein-Protein Interactions Based on Functional and
Topological Similarities
Point Process Models with LASSO Penalties
Projection Pursuit Classification Tree Visualization
web tool for estimating under-five deaths caused by poor-quality
antimalarials in sub-Saharan Africa
Functions for Clustering of Presence-Absence, Abundance and
Multilocus Genetic Data
Tools for Designing and Weighting Survey Samples
Provides a pragma / directive / keyword syntax for R
Prais-Winsten Estimation Procedure for AR(1) Serial Correlation
Kvantitatiivsete meetodite praktikumi asjad / Functions used in
the course "Quantitative methods in behavioural sciences"
(SHPH.00.004), University of Tartu
Testing Workbench for Precision-Recall Curves
Precipitation Intensity, Concentration and Anomaly Analysis
Calculate Accurate Precision-Recall and Receiver Operator
Characteristics Curves
Prediction Intervals for Three Basic Statistical Models
Calculate Predicted Means for Linear Models
Classification rule based on Bayesian mixture models with
feature selection bias corrected
Utilities to Fit Paired Comparison Models for Preferences
Dirichlet Process Bayesian Clustering, Profile Regression
Preparing Experimental Data for Statistical Analysis
Tools for Visualization of Interdependent Data Quality Issues
R Markdown Template to Preregister Scientific Studies
R Interface for PreSens Fiber Optic Data
Scale Bar, North Arrow, and Pretty Margins in R
Pretty, Human Readable Formatting of Quantities
Geostatistical Modelling of Spatially Referenced Prevalence Data
Estimating Regional Trends of a Prevalence from a DHS
Permutation Significance for Random Forests
Functions and data for A Primer of Ecology with R
Visually Assessing the Specificity and Informativeness of Primer
Pairs
Fits a Principal Curve in Arbitrary Dimension
Finding and plotting simple basis vectors for multivariate data
Access Data from the Oregon State Prism Climate Project
Protocol Inspection and State Machine Analysis
Differentially Private Regularized Logistic Regression
Estimation of Prevalence Ratios using Logistic Models
Point-Process Response Model for Optogenetics
Elementary Probability on Finite Sample Spaces
Statistical Tools for Probing Moderation Effects
Probabilistic weather forecast using the GOP method
Probit with Spatial Dependence, SAR and SEM Models
probsvm: Class probability estimation for Support Vector
Machines
Inference for the Stress-Strength Model R = P(Y<X)
Product Density Estimation for ICA using tilted Gaussian density
estimates
Product-Limit Estimation for Censored Event History Analysis
The package can prioritize candidate disease metabolites based
on global functional relationships between metabolites in the
context of metabolic pathways
Profile Likelihood for a Parameter in Commonly Used Statistical
Models
Tools for profiling inference functions for various model
classes
Profile Analysis of Multivariate Data in R
An alternative display for profiling information
Finding the Optimal Cluster Number Using Progeny Clustering
support package for "Programming Graphical User Interfaces in R"
Prognostic ROC curves for evaluating the predictive capacity of
a binary test
A simple interface to the PROJ.4 cartographic projections
library
Automates the creation of new statistical analysis projects
Biological Network Construction, Visualization and Analyses
Various confidence interval methods for proportions
Analyzing Combination of Proportions and Relative Risk
Parse Java Properties Files for R Service Bus Applications
Inference on Single Binomial Proportion and Bayesian
Computations
Feature (gene) selection based on the Proportional Overlapping
Scores
Propensity score methods for assigning treatment in randomized
trials
Miscellaneous functions for processing and sample selection of
vis-NIR diffuse reflectance data
Generates Various Protein Descriptors for Machine Learning
Algorithms
Optimization of a multi-stage proteomic study
Statistical Analysis of High Throughput Proteomics Data
Protein (identification and) quantification based on peptide
evidence
Inference on Prototypes from Clusters of Features
Generating Various Numerical Representation Schemes of Protein
Sequence
Manipulate and Play 'ProTracker' Modules
Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics
Statistical Toolbox for Sedimentary Provenance Analysis
Minimal Protein Set Explaining Peptide Spectrum Matches
Precision-Recall and ROC Curves for Weighted and Unweighted Data
Test of periodicity using response surface regression
Bootstrapping for Propensity Score Analysis
Penalized Parametric and Semiparametric Bayesian Survival Models
with Shrinkage and Grouping Priors
Analysis of Parent-Specific DNA Copy Numbers
Political Science Computational Laboratory, Stanford University
Standardizing Physiological Composite Risk Endpoints
Adaptive, Sine-Multitaper Power Spectral Density Estimation
Download Regularly Maintained Political Science Data Sets
Parameter Space Exploration with Latin Hypercubes
Methods for Evaluating Principal Surrogates of Treatment
Response
Algorithm for Pattern Sequence Based Forecasting
Projected Spatial Gaussian Process (psgp) methods
Build Panel Data Sets from PSID Raw Data
Several Local False Discovery Rate Estimators
Non-Linear Mixed-Effects modelling using Stochastic Differential
Equations
Piecewise Exponential Model for Time to Progression and Time
from Progression to Death
Probabilistic Suffix Trees and Variable Length Markov Chains
Simulations of grouped responses relative to baseline
Procedures for Psychological, Psychometric, and Personality
Research
Recursive Partitioning Based on Psychometric Models
Functions for analyzing psychophysical data in R
Produce well-formatted tables for psychological research
Bayesian Variable Selection with Hierarchical Priors
Performs simulation study to look for publication bias, using a
technique described by Ioannidis and Trikalinos; Clin Trials.
2007;4(3):245-53
Printing Results of Statistical Computing in a Publishable Way
Bayesian Estimation of Tumor Purity and Clonality
Population Viability Analysis with Data Cloning
Calculation and Application of p-variation
Hierarchical Clustering with P-Values via Multiscale Bootstrap
Resampling
Computes phylogenetic eigenvectors regression (PVR) and
phylogenetic signal-representation curve (PSR) (with null and
Brownian expectations)
An R package to interact with the Project Vote Smart API for
scientific research
Time Series Regression Using the Power Weighted Densities (PWD)
Approach
Statistical Power Simulation for Testing the Rasch Model
Penn World Table (Versions 5.6, 6.x, 7.x)
Heuristics for the Quadratic Assignment Problem (QAP)
Yet another package for Qualitative Comparative Analysis
Tests for Type I Error in Qualitative Comparative Analysis (QCA)
Modern Functions for Qualitative Comparative Analysis
Professional Functionality for Performing and Evaluating
Qualitative Comparative Analysis
Quality Control of Genome Wide Association Study results
Robust Estimation of Gaussian Mixture Models
Sure Independence Screening via Quantile Correlation and
Composite Quantile Correlation
Bridging the Gap Between Qualitative Data and Quantitative
Analysis
Dictionaries and Word Lists for the 'qdap' Package
Regular Expression Removal, Extraction, and Replacement Tools
Fitting a Quadrilateral Dissimilarity Model to Same-Different
Judgments
Pricing of Vanilla and Exotic Option Contracts
Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
Tools for Quantitative Genetics Data Analyses
Estimate the Coefficients for Non-Convex Penalized Quantile
Regression Model by using QICD Algorithm
Processing Data for Quantitative Language Comparison (QLC)
Utility Sparse Matrix Functions for Quantitative Language
Comparison
Visualization for Quantitative Language Comparison (QLC)
Statistical transformations for post-processing climate model
output
Analysis of Subjective Perspectives Using Q Methodology
Analysis of Health-Related Quality of Life in Oncology
Modelling and analysis of real-time PCR data
Quasi-Potential Analysis for Stochastic Differential Equations
Self Calibrating Quantile-Quantile Plots for Visual Testing
Tools that Create D3 JavaScript Force Directed Graph from R
Simultaneous simulation of Q and R mode factor analyses with
Spatial data
Joint Estimation in Linear Quantile Regression
Quantile Regression for Linear Mixed-Effects Models
Provides R-Language Code to Examine Quantitative Risk Management
Concepts
Quantile Regression for Nonlinear Mixed-Effects Models
Quantitative Structure Activity Relationship (QSAR) Data Sets
Densitometric Analysis of Thin-Layer Chromatography Plates
Interactive Graphics for QTL Experiments
Tools for Mapping Multiple Complex Traits
Tools for Mapping of Quantitative Traits of Genetically Related
Individuals and Calculating Identity Coefficients from
Pedigrees
QuACN: Quantitative Analysis of Complex Networks
Exact permutation moments of quadratic form statistics
Functions to solve Quadratic Programming Problems
Sparsity by Worst-Case Quadratic Penalties
Causal Inference with Qualitative and Ordinal Information on
Outcomes
Implements Indices of Qualitative Variation Proposed by Wilcox
(1973)
Streamline Descriptive Analysis of Quantitative Data Matrices
Quantitative chemical analysis: calibration and evaluation of
results
Quantification of Qualitative Survey Data
Estimation of Conditional Quantiles using Optimal Quantization
Quantile-Based Spectral Analysis of Time Series
Clustering Mutations using High Throughput Sequencing (HTS) Data
Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood
Functions to Make Surveys Processing Easier
Analysis of Queueing Networks and Models
Regularized sparse inverse covariance matrix estimation
Fits Psychometric Functions for Multiple Groups
Build Regression Models Quickly and Display the Results Using
'ggplot2'
Summary charts of micro satellite profiles for a set of
biological samples
Variables Selection for Clustering and Classification
Quasi Variances for Factor Effects in Statistical Models
Generalized Eigenvalues and QZ Decomposition
Estimation of R0 and Real-Time Reproduction Number from
Epidemics
Compressive Sampling: Sparse Signal Recovery Utilities
Estimate Structured Additive Regression Models with BayesX
Bivariate (Two-Dimensional) Confidence Region and Frequency
Distribution
Converting R CRAN outputs into Google Earth
Simple R Interface to Microsoft PowerPoint using rcom or
RDCOMClient
A GTK GUI for fitting and comparing GLM and GLMM in R
r2stl, R package for visualizing data using a 3D printer
Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS'
Racing methods for the selection of the best
R Package for Phylogenetic Analysis of RADseq Data
Normalization and Study of Rank Abundance Distributions
Tools for plotting skew-T diagrams and wind profiles
Inverse-Regression Estimation of Radioactive Doses
Radon and Soil Gas Transport in 2D Porous Medium
Convenience Functions for Routine Data Exploration
Ridge Estimation of Precision Matrices from High-Dimensional
Data
Data Fusion Filters for Attitude Heading Reference System (AHRS)
with Several Variants of the Kalman Filter and the Mahoney and
Madgwick Filters
Rainbow Plots, Bagplots and Boxplots for Functional Data
Obtain and Analyze Rainfall Data from the Climate Prediction
Center
Rainfall Frequency (Design Storm) Estimates from the US National
Weather Service
Retrieves Altmerics Data For Any Published Paper From
Altmetric.com
Tools For Managing File/function Dependencies In R
Regularized Generalized Linear Models with Interaction Effects
Structural Equation Modeling using the reticular action model
(RAM) Notation
Bayesian Geostatistical Modeling with RAMPS
Reinforced Angle-Based Multicategory Support Vector Machines
Random number generator based on AES cipher
Package Provides Access to Fake User Data
Simulation and Analysis of Random Fields
Utilities for the Simulation and Analysis of Random Fields
Breiman and Cutler's Random Forests for Classification and
Regression
Distributed 'randomForest' for Big Data using 'ddR' API
Random Forests for Survival, Regression and Classification
(RF-SRC)
Function to Create a Random List for Crossover Studies
Easy to Use Tools for Common Forms of Random Assignment
Function for Generating Random Names and a Dataset
A Parallel Analysis With Polychoric Correlation Matrices
Random Uniform Forests for Classification, Regression and
Unsupervised Learning
Toolbox for Pseudo and Quasi Random Number Generation and RNG
Tests
Occurrence Filtering and Generation of Species Range Polygons
A Platform for the Study of Macroecology of Life History Traits
Mid-Domain Effect and Species Richness Patterns
Model-Based Clustering for Multivariate Partial Ranking Data
Ranking Responses in a Single Response Question or a Multiple
Response Question
Ranking of Nodes with Kernelized Score Functions
Fast Nearest Neighbour Search (Wraps Arya and Mount's ANN
Library)
Fast Nearest Neighbour Search (Wraps ANN Library) Using L1
Metric
Reliable Accurate Prenatal non-Invasive Diagnosis R package
Bindings to AppArmor and Security Related Linux Tools
Application Directories: Determine Where to Save Data, Caches,
and Logs
Miscellaneous (stats) helper functions with sane defaults for
reporting
Functions to import data from Arc/Info V7.x binary coverages
Testing Gene-Environment Interaction for Rare Genetic Variants
Ecological and biogeographical null model tests for comparing
rarefaction curves
Calculation of Rarity Indices for Species and Assemblages of
Species
Solvers for Large Scale Eigenvalue and SVD Problems
Range Ancestral State Estimation for Phylogeography and
Comparative Analyses
Routines for Solving Rate-Distortion Problems
A Modification of Fleiss' Kappa in Case of Nominal and Ordinal
Variables
Graphical User Interface for Data Mining in R
Parameter estimation for the averaging model of Information
Integration Theory
Interface to the Bird-Watching Dataset Proyecto AVIS
Read and Write BAM (Binary Alignment) Files
The Beta Random Number and Dirichlet Random Vector Generating
Functions
Interface to the 'Biodiversity' 'Heritage' Library
Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction
Data
Handling Linear Gaussian Bayesian Networks
Extensible, Parallelizable Implementation of the Random Forest
Algorithm
Perform Rosenbaum bounds sensitivity tests for matched and
unmatched data
Rbundler manages an application's dependencies systematically
and repeatedly
Fast and Light-Weight Caching (Memoization) of Objects and
Results to Speed Up Computations
Calculation of the Integrated Flow of Particles between Polygons
Access and Plot CanVec and CanVec+ Data for Rapid Basemap
Creation in Canada
Loglinear Models for Capture-Recapture Experiments
This package builds maps with a full cartographic layout
Large, Sparse Optimal Matching with Refined Covariate Balance
Optimal Subset Matching with Refined Covariate Balance
RCEIM - R Cross Entropy Inspired Method for Optimization
Conjugate Gradient Minimization of Nonlinear Functions
Chess Move, Generation/Validation, Piece Placement/ Movement,
and Check/Checkmate/Stalemate Detection
Discrete Choice (Binary, Poisson and Ordered) Models with Random
Parameters
RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather
GENeretor): a package to generate time series of climate
indices from RMAWGEN generations
R tools for integrating with the www.clinicalcodes.org
repository
Download Aggregate Trial Information and Results from
ClinicalTrials.gov
Run 'R CMD check' from 'R' and Capture Results
Rcmdr Plug-In for Business and Customer Analytics
R Commander Plugin for (industrial) Design of Experiments
Plugin de R-Commander para el Manual 'EACSPIR'
Rcmdr Evidence Based Medicine Plug-in Package
R Commander Plug-in for the EZR (Easy R) Package
R Commander Plug-in for Fitting Generalized Waring Regression
Models
An Rcmdr Plug-in for Kaplan-Meier Plots and Other Plots by Using
the ggplot2 Package
Graphical User Interface for Conducting Meta-Analyses in R
Adds menu items to produce mosaic plots and assoc plots to Rcmdr
R Commander Plug-in for University Level Applied Statistics
Graphical POINT of view for questionnaire data Rcmdr Plug-In
Rcmdr Receiver Operator Characteristic Plug-In PACKAGE
Tools for sampling in Official Statistical Surveys
Rcmdr Plugin for Designing and Analyzing Single-case Experiments
R Commander Plug-in for the 'survival' Package
Graphical Integrated Text Mining Solution
Tools for Manipulating and Summarizing CMIP5 Data
Interface to Colombos Compendia using the Exposed REST API
A Collection of Small Text Corpora of Interesting Data
Regions of common profiles modelling with mixtures-of-experts
'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest
Neighbors
'Rcpp' Interface to the APT Package Manager
'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Rcpp bindings for the Boost Date_Time library
Examples using RcppClassic to interface R and C++
Read-Write Support for NumPy Files via Rcpp
Global Optimization by Differential Evolution in C++
'Rcpp' Integration for the 'Eigen' Templated Linear Algebra
Library
Examples using 'Rcpp' to Interface R and C++
'Rcpp' Bindings for the 'Faddeeva' Package
'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Seamless Interface to Octave -- And Matlab
An Interruptible Progress Bar with OpenMP Support for C++ in R
Packages
'Rcpp' Bindings for 'Redis' using the 'hiredis' Library
R Interface to the Shark Machine Learning Library
Rcpp bindings for Sequential Monte Carlo
Rcpp Integration of the Streamulus DSEL for Stream Processing
'Rcpp' Bindings to Parser for Tom's Obvious Markup Language
'Rcpp' Integration of Different "Ziggurat" Normal RNG
Implementations
Access to Cryptsy Crypto-Currency Exchange Public Information
API via R
R interface to the CSDP semidefinite programming library
General Network (HTTP/FTP/...) Client Interface for R
Shrunken Centroids Regularized Discriminant Analysis
'DataCite' Client for 'OAI-PMH' Methods and their Search 'API'
Toolbox for Regression Discontinuity Design ('RDD')
Robust Data Envelopment Analysis (DEA) for R
Relevant Dimension Estimation (RDE) in Feature Spaces
R interface to the dieharder RNG test suite
Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files
R Bindings for the Discourse Network Analyzer
R Interface to the Deutsche Nationalbibliothek (German National
Library) API
Update and Manipulate Rd Documentation Objects
Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Programmatic Interface to the 'Dropbox' API
R Interface to DSDP Semidefinite Programming Library
An R wrapper for the Data Science Toolkit API
The rDVR package allows you to start stop and save a video
server from within R
Reactive transport modelling in 1D, 2D and 3D
Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG)
Reads Mass Spectrometry Data in Bruker *flex Format
Suite of Functions to Flexibly Read Data from Files
Read, Write, Manipulate and Convert GenAlEx-Format Genotype
Files
Reading Machine Learning Benchmark Data Sets in Different
Formats
Reads Mass Spectrometry Data in mzXML Format
Monotonize Point and Interval Functional Estimates by
Rearrangement
Empirical Bayes Estimation and Inference in R
R Client for the eBird Database of Bird Observations
Finite Mixture Modeling, Clustering & Classification
Build Regular Expressions in a Human Readable Way
Core Functionality for the 'rebus' Package
Date and Time Extensions for the 'rebus' Package
Numeric Extensions for the 'rebus' Package
Unicode Extensions for the 'rebus' Package
Relevant Component Analysis for Supervised Distance Metric
Learning
Redundancy Control in Pathways databases
Ordination Methods for the Analysis of Beta-Diversity Indices
Lab for Developing and Testing Recommender Algorithms
Book-Crossing Dataset (BX) for 'recommenderlab'
Recommender System using Matrix Factorization
Companion Package to the Book 'R: Einführung durch angewandte
Statistik'
Reconstruction of Daily Data - Precipitation
Markov Chain Monte Carlo Methods for Redistricting Simulation
Applications of Empirical Dynamic Modeling from Time Series
Regression Trees with Random Effects for Longitudinal (Panel)
Data
EWAS using Reference-Free DNA Methylation Mixture Deconvolution
Gene and Splice Site Annotation Using Annotation Data from
Ensembl and UCSC Genome Browsers
Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
Interactive Plotting for Functional Data Analyses
Wavelet-Domain Regression with Functional Data
Cluster analysis via regression coefficients
Detecting Mislabeled Samples in Genetic Data
Risk Estimation for Genetic and Environmental Traits
Gaussian linear models with linear covariance structure
Expander Functions for Generating Full Gradient and Hessian from
Single- and Multi-Slot Base Distributions
Random Subspace Method (RSM) for Linear Regression
Performs Regularization on Structural Equation Models
Detect and Test Regular Sequences and Subsequences
Searching for Footprints of Selection using Haplotype
Homozygosity Based Tests
Item Analysis Package with Standard Errors
Relative importance of regressors in linear models
Data Structures and Algorithms for Relations
relax -- R Editor for Literate Analysis and lateX
Relaxation of glmnet models (as in relaxed lasso, Meinshausen
2007)
Functions for estimating parameters in software reliability
models
Tools for Structural Reliability Analysis
Package for some probability distributions
Relative Contribution of Effects in a Regression Model
Relationship Inference Based on Mixtures
Extensible Markov Model for Modelling Temporal Relationships
Between Clusters
Regularized Multivariate Regression for Identifying Master
Predictors
Empirical Orthogonal Teleconnections in R
Remote R: Control a Remote R Session from a Local One
Fitting Linear Models with Endogenous Regressors when No
External Instruments are Available
Renewal Method for Extreme Values Extrapolation
Reordering the dendrogram according to the class labels
GWAS for Multiple Observations on Related Individuals
Global tests for expression data of high-dimensional sets of
molecular features
Replicability Analysis for Multiple Studies of High Dimension
Tools for Handling EpiJSON (Epidemiology Data) Files
Two-Way ANOVA-Like Method to Analyze Replicated Point Patterns
Miscellaneous Tools for Reproducible Research
Repeated Measures Proportional Odds Logistic Regression
Microsoft Word, Microsoft PowerPoint and HTML Documents
Generation
External jars required for package ReporteRs
A General Message and Error Reporting System
Tools for automatically generating reproducible clinical report
Assist the Workflow of Writing Academic Articles and Other
Reports
Generate LaTeX Tables of Descriptive Statistics
R Interface to 'EPP-Lab', a Java Program for Exploratory
Projection Pursuit
Determine the representativity of two multidimensional data sets
Reproduce Statistical Analyses and Meta-Analyses
General Purpose Client for 'ERDDAP' Servers
Regression and Similarity Evaluation for Memory-Based Learning
in Spectral Chemometrics
Tools for Analysis, Design, and Operation of Water Supply
Storages
Flexibly Reshape Data: A Reboot of the Reshape Package
A GUI for the reshape2 and plyr packages
electrical properties of resistor networks
Resource Selection (Probability) Functions for Use-Availability
Data
Functions for Working with the 'www.estimize.com' Web Services
Robust Estimation of Location and Scatter
Import Professional Baseball Data from 'Retrosheet'
Repeated Function Evaluation for Sensitivity Analysis
Revealed Preferences and Microeconomic Rationality
R Markdown Format for 'reveal.js' Presentations
R wrappers for EXPOKIT; other matrix functions
Get Seismic Data from the International Federation of Digital
Seismograph Networks
Rapid Feasible Generalized Least Squares
Importance Measure and Selection for Groups of Variables with
Random Forests
Easy Handling of and Access to Files Organized in Structured
Directories
'Programmatic Interface to the 'openfisheries.org' API'
Multivariate Analysis of Metabolomics Data using Random Forests
MarkLogic NoSQL Database Server in-Database Analytics for R
Graphics for Spherical Distributions and Earthquake Focal
Mechanisms
Data Integration Feature for Force.com and Salesforce.com
Code Examples to Accompany the Book "R for Dummies"
BATWING for calculating forensic trace-suspect match
probabilities
Estimate Permutation p-Values for Random Forest Importance
Metrics
Random Forests Model Selection and Performance Evaluation
Gabriel Multiple Comparison Test and Plot the Confidence
Interval on Barplot
Gamma convolutions for methylation array background correction
Interface to the Global 'Biodiversity' Information Facility
'API'
Hierarchical Modeling and Frequency Method Checking on
Overdispersed Gaussian, Poisson, and Binomial Data
RGCCA and Sparse GCCA for multi-block data analysis
Bindings for the Geospatial Data Abstraction Library
Tools To Generate Daily-Precipitation Time Series
R Version of GENetic Optimization Using Derivatives
Interface to Geometry Engine - Open Source (GEOS)
Build, Import and Export GEXF Graph Files
Access WHO Global Health Observatory Data from R
R Interface to Global Biotic Interactions
Unsampled Data in R for Google Analytics Premium Accounts
UI for the RGP genetic programming framework
Data and Functions from the Book R Graphics, Second Edition
Interface Between GRASS 7 Geographical Information System and R
Data frame editor and dialog making wrapper for RGtk2
Interface to the 'Handsontable.js' Library
Retrieve data sets from the HealthData.gov data API
Side Effect Risks in Hospital : Simulation and Estimation
Permits *apply() Style Dispatch for 'HPC'
Heart rate variability analysis of ECG data
Regularized Hotelling's T-square Test for Pathway (Gene Set)
Analysis
Methods for Accessing Huge Amounts of Data [deprecated]
ri: R package for performing randomization-based inference for
experiments
Randomization inference for treatment effects on a binary
outcome
Computes and compares species richnesses
R Package for Ridge Fusion in Statistical Learning
Ridit Analysis (An extension of the Kruskal-Wallis Test.)
Read 'ImageJ' Region of Interest (ROI) Files
C++ Classes to Embed R in C++ Applications
Risk Regression Models for Survival Analysis with Competing
Risks
Riskset ROC curve estimation from censored survival data
Risk Quantification for Stock Portfolios under the T-Copula
Model
Isothermal Titration Calorimetry (ITC) Data Analysis
In vitro in vivo correlation linear level A
Steady and Unsteady Open-Channel Flow Computation
Reversible Jump MCMC for the Analysis of CGH Arrays
A Clean, Whitespace-Sensitive Template Language for Writing HTML
Analysis of Data Acquired Using the Receiver Operating
Characteristic Paradigm and Its Extensions
Provides access to databases through the JDBC interface
Perform JIVE Decompositions for Multi-Source Data
R-interface to Gene Drop Simulation from JPSGCS
R interface of the Gateway to Advanced and User-friendly
Statistics Service
Serialize R objects to JSON, JavaScript Object Notation
Using Apache 'Kafka' Messaging Queue Through 'R'
External Jars Required for Package 'rkafka'
Random KNN Classification and Regression
Topological Analysis of Knotted Proteins, Biopolymers and 3D
Structures
Mann-Kendall Test, Seasonal and Regional Kendall Tests
Data Exchange Between R and LabKey Server
Package for the Analysis of Lake Physics
R Interface to RNG with Multiple Streams
Ensemble Empirical Mode Decomposition (EEMD) and Its Complete
Variant (CEEMDAN)
A Toolbox for Non-Tabular Data Manipulation
R Parallel Implementation of Local Outlier Factor(LOF)
Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive
Models
Modelling Ordinary Differential Equations Leading to
Luminescence
'Shiny' Applications for the R Package 'Luminescence'
Fit Multi-Modal Mallows' Models to ranking data
Continuous Optimization using Memetic Algorithms with Local
Search Chains (MA-LS-Chains) in R
Read and Write MAT Files and Call MATLAB from Within R
The MCFS-ID Algorithm for Feature Selection and Interdependency
Discovery
HTML Output Formats and Templates for 'rmarkdown' Documents
'R' 'Markdown' Format for 'shower' Presentations
An Individual-Based Population Genetic Simulation Environment
Data Mining Classification and Regression Methods
Combining Mixture Components for Clustering
Miscellaneous Collection of Functions for Medical Data Analysis
Connect R with MOA for Massive Online Analysis
Rounded Mixture Package. Performs Probability Mass Function
Estimation with Nonparametric Mixtures of Rounded Kernels
R MPFR - Multiple Precision Floating-Point Reliable
Interface (Wrapper) to MPI (Message-Passing Interface)
RMRAINGEN (R Multi-site RAINfall GENeretor): a package to
generate daily time series of rainfall from monthly mean values
Root-mean-square goodness-of-fit test for simple null hypothesis
Distributions, Statistics and Tests derived from Random Matrix
Theory
Database Interface and 'MySQL' Driver for R
Wrapper for several R packages and scripts to automate RNA-seq
analysis
Using Graphs as a Navigational Infrastructure
Some image data used in the RnavGraph package demos
Visualization of High-Throughput Data on Large-Scale Biological
Networks
EUtils libraries for use in the R environment
Obtain, Organize, and Visualize NCEP Weather Data
Fast Network Modularity and Roles Computation by Simulated
Annealing (Rgraph C Library Wrapper for R)
Provides an Interface to the Agent-Based Modelling Platform
NetLogo
Tools for Analyzing Content Homogeneity and News Diffusion using
Computational Text Analysis
Semantically Rich I/O for the 'NeXML' Format
Seeding the Default RNG with a Numeric Vector
Utility functions for working with Random Number Generators
Toolbox for WELL Random Number Generators
Random number generator WELL19937a with 53 or 32 bit output
Image Registration Using the NiftyReg Library
An Interface to the NOAA Operational Model Archive and
Distribution System
UK National River Flow Archive Data from R
Robust Estimation for Compositional Data
Optimally robust influence curves and estimators for location
and scale
Infinitesimally robust estimators for preprocessing omics data
A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler'
Permissions Checker
Robust Periodogram and Periodicity Detection Methods
Three-Step Regression and Inference for Cellwise and Casewise
Contamination
Optimally robust influence curves for regression and scale
Robust Regularized Singular Value Decomposition
Data Management for Hydrology and Beyond Using the Observations
Data Model
Truncated Maximum Likelihood Fit and Robust Accelerated Failure
Time Regression for Gaussian and Log-Weibull Case
Robust Mixture Modeling Fitted via Spatial-EM Algorithm for
Model-Based Clustering and Outlier Detection
Robust Methods using Exponential Tilt Model
An Object Oriented Solution for Robust Factor Analysis
Robust Estimation for Generalized Additive Models
Robust Methods for High-Dimensional Data
Robust estimation of the generalized log gamma model
An Extended Rao-Stirling Diversity Index to Handle Missing Data
Robust Estimation of Variance Component Models
eXperimental Functionality for Robust Statistics
Construction of diagnostic or prognostic scoring system and
internal validation of its discriminative capacities based on
ROC curve and 0.633+ boostrap resampling
RObust rank COrrelation COefficient and test
Visualizing the Performance of Scoring Classifiers
Time-Dependent ROC Curve Estimators and Expected Utility
Functions
Non-parametric estimation of ROC curves without Gold Standard
Test
Provides Access to Databases Through the ODBC Interface
Parameterized Queries Extension for RODBC
Plots Surfaces of Rates of Mortality Improvement
R Object-Oriented Programming with or without References
Finds roots, extrema and inflection points of a curve
Nonlinear Root Finding, Equilibrium and Steady-State Analysis of
Ordinary Differential Equations
Optimally robust estimation - old version
Optimally robust estimation for regression-type models
OCI Based Oracle Database Interface for R
Plot Raster Map Tiles from Open Street Map and Other Sources
Interface to the 'Open Tree of Life' API
Roughened Random Forests for Binary Classification
Simplification of Decision Tables using Rough Sets
Data Analysis Using Rough Set and Fuzzy Rough Set Theories
Royston's H Test: Multivariate Normality Test
Simple interactive controls for R using the tcltk library
Recursive Partitioning and Regression Trees
Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Classification trees for ordinal responses
Tools for parsing and manipulating rpart objects, including
generating machine readable rules
RobustPCA: Decompose a Matrix into Low-Rank and Sparse
Components
Tools for the Construction of Clinical Code Lists for Primary
Care Database Studies
RPCLR (Random-Penalized Conditional Logistic Regression)
Read, write, visualize and manipulate PDB files
Easy Interface to Advanced PostgreSQL Features
Interface to PHAST Software for Comparative Genomics
Phylogenetic Comparative Tools for Missing Data and
Within-Species Variation
Build Powerful Pivot Tables and Dynamically Slice & Dice your
Data
Interface to the Search 'API' for 'PLoS' Journals
Graphical User Interface (GUI) for Interactive R Analysis
Sessions
R interface to the PostgreSQL database system
Sample Size Computations Controlling the Type-II Generalized
Family-Wise Error Rate
Resolvable partially pairwise balanced design and Space-filling
design via association scheme
Reads, Annotates, and Normalizes Reverse Phase Protein Array
Data
Database Preferences and Skyline Computation
Functions for Working with 'Eprime' Text Files
rpubchem - Interface to the PubChem Collection
R Interface to the Pushbullet Messaging Service
Statistical Methods for the Randomized Response Technique
Ridge Regression and Other Kernels for Genomic Selection
Re-parametrization of RR-BLUP to allow for a fixed residual
variance
Scalable Robust Estimators with High Breakdown Point
Robust Multivariate Methods for High Dimensional Data
Scalable Robust Estimators with High Breakdown Point for
Incomplete Data
'DRNG' on Intel CPUs with the 'RdRand' Instruction for R
Environment for Assessing Recommender Systems
Invoke 'Repast Simphony' Simulation Models
Fitting Distributions to Given Data or Known Quantiles
Robust Regularized Linear Discriminant Analysis
Correlation and Regression Analyses for Randomized Response Data
Dynamic Generation of Scientific Reports
Randomized Response Techniques for Complex Surveys
Data related to the book "R Statistical Application Development
by Example"
SAGA Geoprocessing and Terrain Analysis in R
Tools, Classes, and Methods for Interfacing with SaTScan
Stand-Alone Software
An R Package for Stepwise Cluster Analysis
Bi-Directional Interface Between R and Scala with Callbacks
SciMark 2.0 Benchmark for Scientific and Numerical Computing
Deployment Interface for R Markdown Documents and Shiny
Applications
A Method to Download Department of Education College Scorecard
Data
statconn: provides portable C-style interface to R
(StatConnector)
Ray Shooting Depth (i.e. RS Depth) functions for bivariate
analysis
Tools for Reading SDMX Data and Metadata
Estimating the Proportion of Genetically Modified Seeds in
Seedlots via Multinomial Group Testing
Robust Structural Equation Modeling with Missing Data and
Auxiliary Variables
Gini methodology-based correlation and clustering analysis of
microarray and RNA-Seq gene expression data
Robust Sparse Gaussian Graphical Modeling via the
Gamma-Divergence
Functions for Hierarchical Bayesian Estimation: A Flexible
Approach
Siena - Simulation Investigation for Empirical Network Analysis
Robust Signature Selection for Survival Outcomes
Get Real-Time Meteorological Data in SMET Format
Plant Root System Markup Language (RSML) File Processing
Neural Networks in R using the Stuttgart Neural Network
Simulator (SNNS)
Get SNP (Single-Nucleotide Polymorphism) Data on the Web
Efficient Score Statistics for Genome-Wide SNP Set Analysis
Port of sofia-ml (http://code.google.com/p/sofia-ml/) to R
Adapt Numerical Records to Fit (in)Equality Restrictions
Spatially-Explicit Power Analysis for Conservation and Ecology
Conversion Between Attitude Representations of DCM, Euler
Angles, Quaternions, and Euler Vectors
SQL Server R Database Interface (DBI) and dplyr SQL Backend
A Collection of Methods for Singular Spectrum Analysis
Persistent Fast Amortized Stack and Queue Data Structures
Bayesian Applied Regression Modeling via Stan
Access to the Digital Universe Data set API
Random orthonormal matrix generation on the Stiefel manifold
Simulate and Develop Streaming Processing in [R]
Suite of Nonlinear Differential Algebraic Equations Solvers in R
Interface to 'Sunlight' Foundation 'APIs'
Robust Estimation of the Proportion of Treatment Effect
Explained by Surrogate Marker Information
Design and Analysis of Disease Surveillance Activities
Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays
An R SVG graphics device with dynamic tips and hyperlinks
R interface to SymPy computer algebra system
Manage and manipulate large collections of R objects stored as
tape-like files
Tools for analyzing sales report files of iTunes Connect
Tools for Tensor Analysis and Decomposition
Automatic Text Classification via Supervised Learning
Functions for calculation of texture metrics for Grey Level
Co-occurrence Matrices
Transcription Factor Binding Site Identification Tool
STK++ Core Library Integration to R using Rcpp
Interpolation of Data with Variable Spatial Support
Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
T-Distributed Stochastic Neighbor Embedding using Barnes-Hut
Implementation
The R Implementation of the 't-walk' MCMC Algorithm
Implementation of Unobserved Components Model (UCM)
Data and Functions for USA State and County Unemployment Data
Convert 'RUnit' Test Functions into 'testthat' Tests
Runiversal - Package for converting R objects to Java variables
and XML
Interface Utilities, Model Templates, Parallel Computing Methods
and Additional Distributions for MCMC Models in JAGS
R Interface to the UNU.RAN Random Variate Generators
A GUI for the UNU.RAN random variate generators
Detect and Remove Unwanted Variation using Negative Controls
Diverse Basic Statistical and Graphical Functions
R-Values for Ranking in High-Dimensional Settings
Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Query 'R' Versions, Including 'r-release' and 'r-oldrel'
Search 'Vertnet', a 'Database' of Vertebrate Specimen Records
Rare Variants Association Analyses with Family Data
R Graphics Devices for Vector Graphics Output
Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators
Calling haplotype-based and variant-based pedigree
disequilibrium test for rare variants in pedigrees
Variable Metric Nonlinear Function Minimization
Methods for Family-Based Rare-Variant Genetic Association Tests
Probability of Sharing Rare Variants among Relatives
population control weighted rare-variants TDT
A package for accessing World Bank climate data
Detects spatial outliers using a Random Walk on Bipartite Graph
R wrapper around the Yahoo! Weather, Google Weather and NOAA
APIs
R x C Ecological Inference With Optional Incorporation of Survey
Information
Functions to Parse and Create XMCDA Files
Functions to Compute Chemical Reaction Similarity
Facilities for Simulating from ODE-Based Models
Maximum Likelihood Shrinkage via Generalized Ridge or Least
Angle Regression
R interface to the yacas computer algebra system
R package provide functions to translate English words into
Chinese
Companion to the Forthcoming Book - R you Ready?
Access to the YouTheria mammal trait database
Grain size analysis, textural classifications and distribution
of unconsolidated sediments
GUI Tool for Data Management like SPSS or Stata
Functions for University of Auckland Course STATS 201/208 Data
Analysis
Set of Common Tools for Forecast Verification
Spatial Two Stage Least Squares Estimation
Biclustering via Sparse Singular Value Decomposition
Incorporating Stability Selection
Sabermetrics Functions for Baseball Analytics
Detection of Fixations in Eye-Tracking Data
SA Counterparty Credit Risk under Basel III
Maximum Likelihood Models for Species Abundance Distributions
Small Area Estimation: Time-series Models
Stochastic Approximation Expectation Maximization (SAEM)
algorithm
A Stacked Autoencoder Implementation with Interface to
'neuralnet'
Small Area Estimation for Rao and Yu Model
Simulation Tools for Small Area Estimation
A Toolbox for the Analysis of Proteomics Data
Sensitivity Analysis for Functional Input
Software for the Analysis of Genetic Architecture
Elastic Net and (Adaptive) Lasso Penalized Sparse Asymmetric
Least Squares (SALES) and Coupled Sparse Asymmetric Least
Squares (COSALES) using Coordinate Descent and Proximal
Gradient Algorithms
A Framework for Comparing the Performance of MCMC Samplers
Sample Size Calculation for Various t-Tests and Wilcoxon-Test
Sample Size Calculations for Complex Surveys
Sample size calculations for normal means
Calculating sample size requirements when estimating the
difference between two binomial proportions
Optimal Stratification of Sampling Frames for Multipurpose
Sampling Surveys
Sampling Surface Simulation for Areal Sampling Methods
SAM: Significance Analysis of Microarrays
Stochastic Augmentation of Matched Data Using Restriction
Methods
Sensitivity Analysis of a Meta-analysis with Unpublished but
Registered Analytical Investigations
Statistical Analysis of Network Data with R
C/C++ source code to trigger Address and Undefined Behaviour
Sanitizers
Stratified Analysis with Nonparametric Covariable Adjustment
Spectral Analysis for Physical Applications
Import ASCII files directly into R using only a SAS input script
Data sets from "SAS System for Mixed Models"
Various Functions for Handling and Manipulating Remote Sensing
Data
Spanning Trees Used for Network Inference
Bayesian Emulation, Calibration and Validation of Computer
Models
Small-Sample Adjustments for Wald tests Using Sandwich
Estimators
Semiparametric Bayesian Gaussian copula estimation and
imputation
sbioPN: Simulation of deterministic and stochastic spatial
biochemical reaction networks using Petri Nets
Semidefinite Programming for Fitting Block Models of Equal Block
Sizes
Detecting structural breaks using rectangle covering
(non-parametric method)
Compute scagnostics - scatterplot diagnostics
Shape-Constrained Additive Regression: a Maximum Likelihood
Approach
Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models
Simultaneous Confidence Bands for the Mean of Functional Data
Construct Reduced Trees with Predefined Nodal Structures
Stellar CharactEristics Pisa Estimation gRid
Stellar CharactEristics Pisa Estimation gRid for Binary Systems
Supervised Component Generalized Linear Regression
Analyse Citation Data from Google Scholar
Functions and datasets for math used in school
Tools for Analyzing Factorial Experiments
A package on the Schwartz two-factor commodity model
Standardized Climate Indices such as SPI, SRI or SPEI
A Tool Set for Analyzing Political Behavior Data
Scientific Graphing Functions for Factorial Designs
Measure Growth Patterns and Align Sampling Spots in Photographs
Statistical Comparison of Multiple Algorithms in Multiple
Problems
A Package to Score Behavioral Questionnaires
Score Persons Using the Generalized Graded Unfolding Model
Quickly Score Models in Data Science and Machine Learning
SCORER 2.0: an algorithm for distinguishing parallel dimeric and
trimeric coiled-coil sequences
Implements the Scout Method for Covariance-Regularized
Regression
Tools for Scraping Data from HTML and XML Documents
Screen and clean variable selection procedures
Analysis of High-Dimensional Categorical Data such as SNP Data
Transcript-Based Unit Tests that are Easy to Create and Maintain
Simulating the Evolution of Biological Sequences
Diving Calculations and Decompression Models
Shrinkage Discriminant Analysis and CAT Score Variable Selection
Statistical Disclosure Control Methods for Anonymization of
Microdata and Risk Estimation
Graphical User Interface for Package 'sdcMicro'
Methods for Statistical Disclosure Control in Tabular Data
Statistical Disclosure Control Substitution Matrix Calculator
Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome
Similarity Networks
Simulation and Inference for Stochastic Differential Equations
Synthesizing List of Differentially Expressed Features
Species Distribution Modelling Tools: Tools for processing data
associated with species distribution modelling exercises
Create Virtual Species for Species Distribution Modelling
Soft Discretization-based Bayesian Network Inference
Scale-Dependent Hyperpriors in Structured Additive
Distributional Regression
Measures of Risk for the Compound Poisson Risk Process with
Diffusion
Scenario Discovery Tools to Support Robust Decision Making
Tools for Custom Searches / Subsets / Slices of Named R Objects
Seasonal analysis and graphics, especially for climatology
Score Equity Assessment- summary index computation
Statistical Estimation of Cluster Parameters (SECP)
Sampling Design for Spatially Explicit Capture-Recapture
Spatially Explicit Capture-Recapture for Linear Habitats
Access Data from the SeeClickFix Web API
Simulation of Evolutionary and Epidemiological Dynamics
Statistics for Environmental Sciences, Engineering, and
Geography
Simulation of Ecological and Environmental Models
reading and writing SEER*STAT data files
SEER and Atomic Bomb Survivor Data Analysis Tools
A set of tools for measuring spatial segregation
Determine Event Boundaries in Event Segmentation Experiments
Regression Models with Breakpoints/Changepoints Estimation
Spatial Exposure-Hazard Model for Exposure and Impact Assessment
on Exposed Individuals
Predict Information Cascade by Self-Exciting Point Process
Fast Rolling Functions for Seismology using Rcpp
An Information About Deputies and Votings in Polish Diet from
Seventh to Eighth Term of Office
KoNLP static dictionaries and Sejong project resources
Correcting Biased Estimates Under Selection
A Tool for Calculation and Optimization of the Expected Gain
from Multi-Stage Selection
Estimation of Weight Functions in Meta Analysis
Translate CSS Selectors to XPath Expressions
Select Point Pattern Models Based on Minimum Contrast, AIC and
Goodness of Fit
Select Features Reliably with Cohen's Effect Sizes
Genotype Probabilities in Intermediate Generations of Inbreeding
Through Selfing
Regularization for Variable Selection in Model-Based Clustering
and Discriminant Analysis
Goodness-of-fit indexes for structural equation models
Hierarchical Models for Parametric and Semi-Parametric Analyses
of Semi-Competing Risks Data
Identifiability of Linear Structural Equation Models
Semiparametric Copula Bivariate Regression Models
Semiparametric Sample Selection Modelling with Continuous or
Discrete Response
Kernel PCA projection, and semi-supervised variant
Path diagrams and visual analysis of various SEM packages'
output
Structural Equation Modeling Using Partial Least Squares
Semiparametric Estimation of Stochastic Frontier Models
Useful Tools for Structural Equation Modeling
Tool for sending interactive plots with tool-tip content
Sensitivity Analysis for 2x2xk Tables in Observational Studies
Sensitivity Analysis for Case-Control Studies
Sensitivity Analysis in Observational Studies
Sensitivity analysis using weighted M-statistics
Principal Stratification Sensitivity Analysis Functions
Analysis of Sensory and Consumer Data in a Mixed Model Framework
Simultaneous Model-Based Clustering and Imputation via a
Progressive Expectation-Maximization Algorithm
Thurstonian Models for Sensory Discrimination
Simulation and Group Sequential Monitoring of Randomized
Two-Stage Treatment Efficacy Trials with Time-to-Event
Endpoints
A Tool to Associate FASTA Sequences and Features
Simple GUI for Graph Based Visualization of Cluster of DNA
Sequence Reads
Hidden Markov Models for Life Sequences and Other Multivariate,
Multichannel Categorical Time Series
Biological Sequences Retrieval and Analysis
Meta-Analysis of Region-Based Tests of Rare DNA Variants
Efficiently Read Sequence Data (VCF Format, BCF Format and METAL
Format) into R
Sequential Monitoring of Clinical Trials
Generates a permutation matrix based upon a sequence
Simulation and visualization of restriction enzyme cutting
pattern from DNA sequences
Exact Sequential Analysis for Poisson and Binomial Data
Copy Number Estimation from Tumor Genome Sequencing Data
Infrastructure for Ordering Objects Using Seriation
Estimating Infection Rates from Serological Data
A Simple HTTP Server to Serve Static Files or Dynamic Documents
Spatially explicit structural equation modeling
Functions for interacting with, saving and restoring R sessions
SetMethods: A Package Companion to "Set-Theoretic Methods for
the Social Sciences"
Set (Normal) Random Number Generator and Seed
Sets, Generalized Sets, Customizable Sets and Intervals
Automatically Set the Width Option on Terminal Emulators
Calculates the historic date of extinction given a series of
sighting events
Utilities from "Seminar fuer Statistik" ETH Zurich
Functions for Systems Factorial Technology Analysis of Data
Spatial Graph Based Clustering Summaries for Spatial Point
Patterns
Stochastic Gradient Descent for Scalable Estimation
An Object-Oriented Framework for Geostatistical Modeling in S+
Fit a GLM (or cox model) with a combination of lasso and group
lasso regularization
An R package for power and boundary calculations in
pre-licensure vaccine trials using a sequential generalized
likelihood ratio test
Student Growth Percentiles & Percentile Growth Trajectories
Sparse Generalized Principal Component Analysis
Sparse Group Partial Least Square Methods
Enrichment Analysis of CRISPR/Cas9 Knockout Screen Data
Functions for plotting graphical shapes, colors
Change-Point Estimation using Shape-Restricted Splines
Collection and Analysis of Otolith Shape Data
Shape Selection for Landsat Time Series of Forest Dynamics
Statistical Significance of the Sharpe Ratio
Models and Data Sets for the Study of Species-Area Relationships
Tools to Support the Sheffield Elicitation Framework (SHELF)
Bootstrap 2 Web Components for Use with Shiny
A Server-Side File System Viewer For Shiny
Perform Common JavaScript Operations in Shiny Apps using Plain R
Code
Interactive Visual and Numerical Diagnostics and Posterior
Analysis for Bayesian Models
SHrinkage covariance Incorporating Prior knowledge
Slope Heuristic for Block-Diagonal Covariance Selection in High
Dimensional Gaussian Graphical Models
Convert a SpatialLinesDataFrame object to a "igraph-class"
object
Global, Parameterwise and Joint Shrinkage Factor Estimation
The shuffle estimator for explainable variance
Substitution and Indel Distances to Infer Evolutionary
Relationships
Perform Exact Sign Test and Asymptotic Sign Test in Large
Samples
Identify and Visualize Significantly Responsive Branches in a
Phylogenetic Tree
Calculate ANSI S3.5-1997 Speech Intelligibility Index
A Collection of functions for similarity analysis of vegetation
data
Simultaneous inference for diversity indices
Simulating Longitudinal Data with Causal Inference Applications
Simultaneous Comparisons for Multiple Endpoints
Safe Implementation of Monte Carlo Tests
Structure for Organizing Monte Carlo Simulation Designs
Simulation of Ecological (and Other) Dynamic Systems
Constrained Single Index Model Estimation
SIMEX- and MCSIMEX-Algorithm for measurement error models
Simulated Survival and Hazard Analysis for Time-Dependent
Exposure
A Framework for Stochastic Disease Spread Simulations
Subnetwork Integration for Multi-Modal Signatures
Simulation of Event Histories for Multi-State Models
Statistical Inference for MOdular NEtworks (SIMoNe)
Tools for Simulating and Plotting Quantities of Interest
Estimated from Cox Proportional Hazards Models
Simple Graph Data Types and Basic Algorithms
Bayesian Inference and Sensitivity Analysis for Causal Effects
from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured
Confounding
Regression Analysis of Proportional Data Using Simplex
Distribution
Simulation of Synthetic Populations for Survey Data Considering
Auxiliary Information
Power Analysis for Generalised Linear Mixed Models by Simulation
Simulations to Predict the Number of RAD and GBS Loci
Linear Model Data Simulation and Design of Computer Experiments
Tools for Simulation Studies in Parallel
Nonparametric Simulation of RNA-Seq Data
Conduct Simulation Studies with a Minimal Amount of Source Code
Simulation process of 4 selection methods in predicting chemical
potent compounds
A SINful Approach to Selection of Gaussian Graphical Markov
Models
An Enhanced Chart for Simple and Truthful Representation of
Single Observations over Multiple Classes
Functions for Calculating Daily Solar Radiation and
Evapotranspiration
Supplementary Item Response Theory Models
SISUS: Stable Isotope Sourcing using Sampling
Some Invalid Some Valid Instrumental Variables Estimator
Super Imposition by Translation and Rotation Growth Curve
Analysis
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header
Files
Format a number to a string with SI prefix
Sensitivity Indices with Dependent Inputs
Six Sigma Tools for Quality Control and Improvement
Data Transformation and Labelled Data Utility Functions
Data Visualization for Statistics in Social Science
SNP-Set (Sequence) Kernel Association Test
Efficient meta analysis for the SKAT test
Sparse (Multicategory) Kernel Discriminant Analysis
Densities and Sampling for the Skellam Distribution
The Skew Hyperbolic Student t-Distribution
The Skillings-Mack Test Statistic for Block Designs with Missing
Observations
Send messages, images, R objects and files to Slack.com
channels/users
Estimation and Use of the Quantile-Based Skew Logistic
Distribution
Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd
Ed)"
Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd
Ed)"
Tools for Fitting Sparse Latent Factor Model
Maximin-Distance (Sliced) Latin Hypercube Designs
Discrete Prolate Spheroidal (Slepian) Sequence Regression
Smoothers
Smoothing methods for nonparametric regression and density
estimation
Sparse Multi-category Angle-Based Large-Margin Classifiers
Statistical Methods for the Analysis of Case-Control Point Data
Statistical Modeling of Animal Movements
Sparse Multivariate Analysis via Rank Transformation
Tools for Accessing Various Datasets Developed by the Foundation
SmarterPoland.pl
(Standardised) Major Axis Estimation and Testing Routines
Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
A simple Monte Carlo optimizer using adaptive coordinate
sampling
Smoothed minimax concave penalization (SMCP) method for
genome-wide association studies
Data Sets for Statistical Methods in Customer Relationship
Management by Kumar and Petersen (2012)
Utility functions for sequential Monte Carlo
Data to accompany Smithson & Merkle, 2013
R functions and data from Chapter 5 of 'Statistical Methods for
Financial Engineering'
SMfSB 2e: Stochastic Modelling for Systems Biology, second
edition
Smooth Multivariate Interpolation for Gridded and Scattered Data
Provides two taxonomic coefficients from E. S. Smirnov
"Taxonomic analysis" (1969) book
Fitting Univariate Censored Regression Model Under the Family of
Scale Mixture of Normal Distributions
Single and Multi-Objective Optimization Test Functions
Functions Relating to the Smoothing of Numerical Data
Fitting illness-death model for interval-censored data
Smooth Hazard Ratio Curves Taking a Reference Value
Smoothed M-estimators for 1-dimensional location
Survival Regression with Smoothed Error Distribution
Smooth Estimation of GPD Shape Parameter
Practicals for use with Davison (2003) Statistical Models
Datasets for Agresti and Finlay's "Statistical Methods for the
Social Sciences"
The Skew-Normal and Skew-t Distributions
Gadget N-body cosmological simulation code snapshot I/O
utilities
Snipping methods for robust estimation and clustering
Snowball stemmers based on the C libstemmer UTF-8 library
Easier cluster computing (based on snow)
Fault Tolerant Simple Network of Workstations
SNPs-based whole genome association studies
Maximally selected statistics for SNP data
Bivariate Gaussian Genotype Clustering and Calling for Illumina
Microarrays
Random Forest for SNPs to Prevent X-chromosome SNP Importance
Bias
Flexible writing of snpStats objects to flat files
Accessing, subsetting and plotting mouse SNPs
Standard and Nonstandard Statistical Models and Methods for Test
Equating
Memory management in R by delayed assignments
Specific Correspondence Analysis for the Social Sciences
Tools for Collecting Social Media Data and Generating Networks
for Analysis
Generates social networks based on distance
Social Position Indicators Construction Toolbox
Functions and Examples for "Software for Data Analysis"
SODA: Main and Interaction Effects Selection for Discriminant
Analysis and Logistic Regression
Optimal Discriminant Clustering(ODC) and Sparse Optimal
Discriminant Clustering(SODC)
Interfaz interactiva con fines didacticos
Matrix Completion via Iterative Soft-Thresholded SVD
A package to consistently represent soil properties along a soil
profile
Models of Soil Organic Matter Decomposition
Soil Spectroscopy Tools and Reference Models
Functions for Soil Texture Plot, Classification and
Transformation
Implementation of Parametric Formulas for Soil Water Retention
or Conductivity Curve
Solar Position Algorithm for Solar Radiation Applications
General-Purpose Optimisation With the Self-Organising Migrating
Algorithm
SOM Bound to Realize Euclidean and Relational Outputs
Controlling the Generalized Familywise Error Rate
Estimating Abundance of Clones from DNA fragmentation data
Single Objective Optimization Benchmark Functions
Non-Parametric Estimation of the Off-Pulse Interval of a Pulsar
Estimation using Sequential Offsetted Regression
Turns a data frame into an HTML file containing a sortable
table
An R client for the OGC Sensor Observation Service
Stochastic Ordering Using Permutations (and Pairwise
Comparisons)
Tools for the Reading and Tokenization of R Code
Soybean Nested Association Mapping Dataset
Design and Simulation of seamless Phase II-III Clinical Trials
Implements The Sequential Predictions Algorithm
SPA3G: R package for the method of Li and Cui (2012)
A Program to Estimate Animal Abundance and Density using
Bayesian Spatially-Explicit Capture-Recapture Models
Sparse conditional graph estimation with joint additive models
Classes and Methods for Spatio-Temporal Data
Spatial and Phylogenetic Analysis of Community Diversity
Spatially Weighted Context Data for Multilevel Modelling
Develop and Run Spatially Explicit Discrete Event Simulation
Models
Mixed Models, Particularly Spatial GLMMs
Perform rare variants association analysis based on summation of
partition approaches
Perform sparse hierarchical clustering and sparse k-means
clustering
Sparklines and Graphical Tables for TeX and HTML
Sparse Biclustering of Transposable Data
Sparse and Regularized Discriminant Analysis
Scaling Count and Binary Data with Sparse Factor Analysis
Sparse Learning Algorithms Using a LASSO-Type Penalty for
Coefficient Estimation and Model Prediction
RcppEigen back end for sparse least trimmed squares regression
Multivariate Normal Functions for Sparse Covariance and
Precision Matrices
Fit sparse linear regression models via nonconvex optimization
Sparse Bayesian Models for Regression, Subgroup Analysis, and
Panel Data
Sparse-aware Maximum Likelihood for Structural Equation Models
Sparse Truncated Singular Value Decomposition (from 'SVDLIBC')
Solution Paths of Sparse Linear Support Vector Machine with
Lasso or ELastic-Net Regularization
Sparse Time Series Chain Graphical Models
Simulation Parameter Analysis R Toolkit ApplicatioN: Spartan
Spatio-Temporal Modeling of Large Data Using a Spectral SPDE
Approach
Graph Edge Computations for Spatial Point Patterns
Functions for Kriging and Point Pattern Analysis
Computation of Spatial Covariance Matrices for Data on
Rectangles
Methods and Data for Spatial Epidemiology
Application of 2D Convolution Kernel Filters to Matrices or 3D
Arrays
Hierarchical spatial generalized extreme value (GEV) modeling
with Bayesian Model Averaging (BMA)
Nonparameteric estimation of spatial segregation in a
multivariate point process
Performs spatial NBDA in a Bayesian context
Multivariate nonparametric methods based on spatial signs and
ranks
Segregation measures for multitype spatial point patterns
Estimation of spatial tail dependence models
R functions for working with spatial data
Regularized Principal Component Analysis for Spatial Data
Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Bayesian Spatial Survival Analysis with Parametric Proportional
Hazards Models
Univariate and Multivariate Spatial-temporal Modeling
Bayesian Modeling and Analysis of Spatially Correlated Survival
Data
Statistical Process Control -- Collection of Some Useful
Functions
Functions for Calibrating Control Charts
A New Reduced-Rank Linear Discriminant Analysis Method
Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Sparse Estimation of a Covariance Matrix
Spatial Dependence: Weighting Schemes, Statistics and Models
Spatio-Dynamic Wetland Plant Communities Model
Tools for Nuclear Magnetic Resonance Spectrum Alignment and
Quantitative Analysis
Alternative spectral clustering, with automatic estimation of k
Statistical package for species richness estimation
Prepare Species Distributions for the Use in Phylogenetic
Analyses
Specificity of personality trait-outcome (or trait-trait)
associations
Metabolomics and Spectral Data Analysis and Mining
Forecast Verification Routines for the SPECS FP7 Project
Approximate Gaussian Processes Using the Fourier Basis
Singular Spectrum Analysis (SSA) Tools for Time Series Analysis
Spectra Visualization, Organizer and Data Preparation
Fitting Linear and Generalized Linear Models to Large Data Sets
Semiparametric efficient estimation for a two-sample treatment
effect
Calculation of the Standardised Precipitation-Evapotranspiration
Index
Auxiliary Functions to Estimate Centers of Biodiversity
Spatial Error Estimation and Variable Importance
Spatial Stochastic Frontier models estimation
Interface Between GRASS 6+ Geographical Information System and R
Statistical Patterns in Genomic Sequences
Numerical integration over spheres and balls in n-dimensions;
multivariate polar coordinates
Spherical Wavelets and SW-based Spatially Adaptive Methods
Estimation of spatial autoregressive models with and without
heteroskedastic innovations
A genetic-based assay for the identification of cell lines
Prediction and variable selection using spike and slab
regression
Bayesian Variable Selection and Model Choice for Generalized
Additive Mixed Models
Sparse Generative Model and Its EM Algorithm
Spatial and Space-Time Point Pattern Analysis
Stack and Reshape Datasets After Splitting Concatenated Values
Econometric Models for Spatial Panel Data
Sparse Partial Least Squares (SPLS) Regression and
Classification
Wrapper Functions for SPM (Statistical Parametric Mapping)
Version 12 from the Wellcome Trust Centre for Neuroimaging
Semiparametric Maximum Likelihood Method for Interactions
Gene-Environment in Case-Mother Control-Mother Designs
Interface to Species Occurrence Data Sources
Semiparametric proportional odds rate model
Sparse Arrays and Multivariate Polynomials
Statistical Package for Reliability Data Analysis
Calculate Species Richness and Extrapolation Metrics
Framework for Screening Prognostic Interactions
Sparse and Non-Sparse Partial Robust M Regression and
Classification
Wald's Sequential Probability Ratio Test
Optimization of Sample Configurations using Spatial Simulated
Annealing
Shape-Preserving Uni-Variate and Bi-Variate Spline Interpolation
Site Percolation on Square Lattice (SPSL)
spsmooth: An Extension Package for 'mgcv'
Spatially Varying and Spatio-Temporal Dynamic Linear Models
Nonparametric Hypothesis Tests of Isotropy and Symmetry
Functions for Spatial Thinning of Species Occurrence Records for
Use in Ecological Models
Spatio-Temporal Bayesian Modelling Using R
Functions and Datasets for "Introduction to Scientific
Programming and Simulation Using R"
Squared extrapolation methods for accelerating fixed-point
iterations
Color-Based Plots for Multivariate Visualization
Statistical Ranking Color Scheme for Multiple Pairwise
Comparisons
Nonparametric Smooth ROC Curves for Continuous Data
The Stepwise Response Refinement Screener (SRRS)
'dplyr'-Like Syntax for Summary Statistics of Survey Data
Fisheries Stock Assessment Simulation Testing with Stock
Synthesis
Sample Size Adjusted for Nonadherence or Variability of Input
Parameters
Robust Correlation Estimation and Testing Based on Spatial Signs
Sample Size Determination (SSD) for Unordered Categorical Data
Tools Developed for Structured Sufficient Dimension Reduction
(sSDR)
Fitting of parametric models using summary statistics
Local and remote system commands with output and error capture
Sample Size Calculations for Microarray Experiments
Sample Size Calculation for RNA-Seq Experimental Design
Skew Scale Mixtures of Normal Distributions
Robust estimation and inference in sample selection models
Estimating Hidden Population Size using Respondent Driven
Sampling Data
Two-dimensional sociometric status determination with rating
scales
Sample Size Calculation using Restricted Mean Survival Time
Tools for Importing Files in the Triple-s (Standard Survey
Structure) Format
Fitting Semi-Parametric log-Symmetric Regression Models
Shrinkage t Statistic and Correlation-Adjusted t-Score
Estimate the 4 parameters of stable law using different methods
Stable Specification Search in Structural Equation Models
Stylized concatenation of data.frames or ffdfs
Modelling the Population Dynamics of a Stage-Structured Species
in Continuous Time
Statistical Analysis of Mixed Ploidy Populations
Well-Formatted Regression and Summary Statistics Tables
Modelling Space Time AutoRegressive Moving Average (STARMA)
Processes
Tools Inspired by Stata to Manipulate Tabular Data
Extract Statistics from Articles and Recompute P Values
Statistical Analysis for Environmental Data
U.S. State Cartogram Heatmaps in R; an Alternative to Choropleth
Maps for USA States
Get Hourly Meteorological Data from Global Stations
Easy Data Manipulation, Data Quality and Statistical Checks
Software Tools for the Statistical Analysis of Network Data
Common R Scripts and Utilities Used by the Statnet Project
Software
A Graphical User Interface for Network Modeling with 'Statnet'
Statistical Tools for Social Network Analysis
Statistical Rank Aggregation: Inference, Evaluation, and
Visualization
ICA and Tests of Independence via Multivariate Distance
Covariance
Testing Steepness of Dominance Hierarchies
Semi-Parametric Stein-Like Estimator with Instrumental Variables
Subpopulation Treatment Effect Pattern Plot (STEPP)
L2 penalized logistic regression with a stepwise variable
selection
Stepwise detection of recombination breakpoints
Stereo Camera Calibration and Reconstruction
Klimontovich's S-Theorem Algorithm Implementation and Data
Preparation Tools
Calculation of the Standardized Temperature Index
Separable Gaussian Process Interpolation (Emulation)
Simultaneous Threshold Interaction Modeling Algorithm
Stineman, a consistently well behaved method of interpolation
Enhanced Seasonal Decomposition of Time Series by Loess
Estimation of the Structural Topic Model
A Tool for Structural Topic Model Visualizations
Plots a QQ-Norm Plot with several Gaussian simulations
Fit a Spatial Occupancy Model via Gibbs Sampling
Stochastic Profiling using Maximum Likelihood Estimation
Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Real-Time Stock Price & Volume in China Market
Build stock models and analyze stock portfolios
Fast Functions for Stock Market Analysis
R Functions for Solving Stoichiometric Equations
Write Storm Bolts in R using the Storm Multi-Language Protocol
Stochastic Simulator for Reliability Modeling of Repairable
Systems
Selection of Training Populations by Genetic Algorithm
Stochastic Model for Analysis of Longitudinal Data
Space-Time Point Pattern simulation, visualisation and analysis
Perform residual analysis on space-time point process models
Stratigraphic Tree Analysis for Palaeontology
Summaries and Population Structure Analyses of Genetic Data
Univariate Stratification of Survey Populations
Toolkit for the plotting and analysis of stratigraphic and
palaeontological data
Calculate Single Station Metabolism from Diurnal Oxygen Curves
Interface for MOA Stream Clustering Algorithms
Functions to help the process of learning structural equation
modelling
Fetch and plot financial stress index and component data
Computation and estimation of reliability of stress-strength
models
Approximate String Matching and String Distance Functions
PPI and Gaussian Network Construction from Transcriptomic
Analysis Results Integrating a Multilevel Factor
Simple, Consistent Wrappers for Common String Operations
Structured Trellis Displays Without Strips for Lattice Graphics
Testing, Monitoring, and Dating Structural Changes
Multiple Testing for Hypotheses with Hierarchical or Group
Structure
STRUctural Modeling of Latent Variables for General Pedigree
Process Control and Internal Validation of Forensic STR Kits
Class and Methods for Structural Time Series Models
Functions for a Variety of Stylometric Analyses
Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures
Methods for exploring treatment effect heterogeneity in subgroup
analysis of clinical trials
Gene selection using Lasso for Microarray data with user-defined
genes fixed in model
Identify Metabolic Subpathways Mediated by MicroRNAs
Identify Signal Subpathways Competitively Regulated by LncRNAs
Based on ceRNA Theory
Unconstrained Optimization using the Subplex Algorithm
Computes Copula using Ranks and Subsampling
SubScore Computing Functions in Classical Test Theory
An Ensemble Method for Combining Subset-Specific Algorithm Fits
Cluster analysis to find molecular subtypes and their assessment
Tools for Making and Spoiling Sudoku Games
Dataframe Summaries, Frequency Tables and Numerical Summaries
with Customizable Output
Supervised Clustering of Predictor Variables such as Genes
Generating Robust Biclusters from a Bicluster Set (Ensemble
Biclustering)
R Code for Testing Markov Chain Nonconvergence
Exact Test and Visualization of Multi-Set Intersections
Implements the supervised multidimensional scaling (superMDS)
proposal of Witten and Tibshirani (2011)
Basic Functions for Supporting an Implementation of Best-Worst
Scaling
Basic Functions for Supporting an Implementation of Choice
Experiments
Fitting Hansen Models to Investigate Convergent Evolution
Evaluation of Surrogate Endpoints in Clinical Trials
LaTeX descriptive statistic reporting for survey data
Inference for model-free between-group parameters for censored
survival data
Estimate accuracy measures for risk prediction markers from
survival data
Estimators of prediction accuracy for time-to-event data
C-statistics for risk prediction models with censored survival
data
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Generate a Survey that can be Completed by Survey Respondents
The Gini concentration test for survival data
IDI and NRI for comparing competing risk prediction models with
censored survival data
Penalised Maximum Likelihood for Survival Analysis Models
Time-dependent ROC curve estimation from censored survival data
Survival Prediction by Joint Analysis of Microarray Gene
Expression Data
Analysis of Proportional Hazards Model with Sparse Longitudinal
Covariates
Miscellaneous Functions for Survival Data
Presmoothed Estimation in Survival Analysis
Survival analysis for recurrent event data
Weibull Regression for a Right-Censored Endpoint with
Interval-Censored Covariate
Simulation of Simple and Complex Survival Data
Power Calculations for SNP Studies with Censored Outcomes
Measures of the Sturdiness of Regression Coefficients
Surrogate variable analysis using partial least squares in a
gene expression study
2d and 3d Space-Varying Coefficient Models
Interfaces to Various State-of-Art SVD and Eigensolvers
SciViews GUI API - Dialog boxes using Tcl/Tk
R 'Htmlwidget' to Add Pan and Zoom to Almost any R Graphic
SciViews GUI API - Functions to manage GUIs
3D Animated Interactive Visualizations Using SVG
SciViews GUI API - IDE and code editor functions
SciViews GUI API - Functions to interface with Komodo Edit/IDE
Linear/Nonlinear SVM Classification Solver Based on ADMM and
IADMM Algorithms
SciViews GUI API - Miscellaneous functions
Causal Effect Estimation and Diagnostics with Support Vector
Machines
SciViews GUI API - Tools (wrapper for packages tools and
codetools)
Nomograms for Right-Censored Outcomes from Survey Designs
A package for complex surveys including plausible values
Visualization, analysis and adjustment of high-dimensional data
in respect to sample annotations
Ensemble Learning Algorithms Based on Support Vector Machines
A multi-OS implementation of the TAMU SWAT model
Utilities for Sweave together with TeX listings package
Miscellaneous Functions for Southwest Fisheries Science Center
Air Quality Data of Switzerland for one year in 30 min
Resolution
Switching nonparametric regression models for a single curve and
functional data
Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Publish Package Manifests to GitHub Gists
Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Efficient Constrained Based Modelling in R
Cost Constrained FLux Balance Analysis: MetabOlic Modeling with
ENzyme kineTics (MOMENT)
cycle-Free Flux balance analysis: Efficient removal of
thermodynamically infeasible cycles from metabolic flux
distributions
Dynamic FBA : dynamic flux balance analysis
Using Gene Expression Data to Improve Flux Balance Analysis
Predictions
Symbolic central and noncentral moments of the multivariate
normal distribution
Framework for the Analysis of Genomic Prediction Data using R
Methods for computing spatial, temporal, and spatiotemporal
statistics
Subsample Temporal Data to Synchronal Events and Compute the MCI
SYNCSA - Analysis of functional and phylogenetic patterns in
metacommunities
Interface to The Synergizer service for translating between sets
of biological identifiers
Inference and Analysis of Sympatry Networks
Synthetic Likelihood methods for intractable likelihoods
Synthetic RNA-Seq Network Generation and Mutual Information
Estimates
Synthetic Control Group Method for Comparative Case Studies
Generating Synthetic Versions of Sensitive Microdata for
Statistical Disclosure Control
Estimating Systems of Simultaneous Equations
Extracts Sentiment and Sentiment-Derived Plot Arcs from Text
Functions for Creating Summary Tables for Statistical Reports
Write Formatted Tables in Excel Workbooks
Produces summary tables and exports them to multi-tab
spreadsheet format (.xls or .xlsx)
Create "Table 1" to Describe Baseline Characteristics
Represents tables as semi-graphic displays
Tableplot, a Visualization of Large Datasets
Tabplotd3, interactive inspection of large data
Helpers for Data Analysis and Presentation Focused on Undergrad
Psychology
Minimum Distance Estimation of Tail Dependence Models
Estimate the Probability in the Upper Tail of the Aggregate Loss
Distribution
Time Course Analysis of Variance for Microarray
Flexible Tree Taper Curves Based on Semiparametric Mixed Models
Replicate Tariff Method for Verbal Autopsy
Collection of utility and convenience functions
Earthquake Traveltime Calculations for 1-D Earth Models
Efficient Computation and Testing of the Bergsma-Dassios Sign
Covariance
Provides various portfolio optimization strategies including
random matrix theory and shrinkage estimators
Taxonomic Information from Around the Web
Taxonomic Standardization of Plant Species Names
Functions for tuberculosis diagnostics research
Tree Branches Evaluated Statistically for Tightness
Survival Analysis using a Transform-Both-Sides model
Simple TCGA Data Access for Integrated Statistical Analysis in R
Advanced Data Analysis of Immune Receptor Repertoires
Statistical Tools for Topological Data Analysis
Analyze High-Dimensional Data Using Discrete Morse Theory
A Boosted Tweedie Compound Poisson Model
Gene Network Inference from Time-Series Transcriptomic Data
Time-Domain Deconvolution of Seismometer Response
Nonparametric Estimation of Time-Dependent ROC Curve from Right
Censored Survival Data
Demonstrations for Teaching and Learning
Selection of Samples and Parameter Estimation in Finite
Population
Fits neural networks to learn about back propagation
Turbulence Time Series Event Detection and Classification
Trimmed Elemental Estimation for Linear Models
Model-Based Clustering and Classification with the Multivariate
t Distribution
Methods for Temporal Disaggregation and Interpolation of Time
Series
Advanced tensors arithmetic with named indices
Covariance Inference and Decompositions for Tensor Datasets
Test for A+B Traditional Escalation Rule
Fit, Simulate and Diagnose Models for Network Evolution Based on
Exponential-Family Random Graph Models
Visualisation, verification and calibration of ternary
probabilistic forecasts
Diversification Rate Estimation and Fast Simulation of
Reconstructed Phylogenetic Trees under Tree-Wide
Time-Heterogeneous Birth-Death Processes Including
Mass-Extinction Events
Tests and checks characteristics of R objects
Bootstrap Test for Similarity of Dose Response Curves Concerning
the Maximum Absolute Deviation
GUI for Entering Test Items and Obtaining Raw and Transformed
Scores
Statistical tests to compare two survival curves with recurrent
events
A mocking, stubbing, and file testing framework extending
testthat
Treatment Effect eXplorer for Microbial Ecology eXperiments
(using Sequence Counts)
Conversion of R Regression Output to LaTeX or HTML Tables
Fast Text Mining Framework for Vectorization and Word Embeddings
Functions for Text Mining and Topic Modeling
Textual Data Analysis Package used by the TXM Software
n-Gram Text Regression, aka Concise Comparative Summarization
Detect Text Reuse and Document Similarity
Technology Forecasting using DEA (Data Envelopment Analysis)
Efficient and Accurate P-Value Computation for Position Weight
Matrices
The Standard Distribution Functions for the Truncated
Generalised Gamma Distribution
Binary Regressions under Independent Student-t Priors
Temperature Measurement with Thermocouples, RTD and IC Sensors
Design and Analysis of Clinical Non-inferiority or Superiority
Trials with Active and Placebo Control
Thresholded variable selection and prediction based on
estimating equations
ML Estimator for Baseline-Placebo-Treatment (Three-Group)
Experiments
Interactive 3D Scatter Plots, Networks and Globes
Represent Precise Coordinates in Three Words
Threshold Regression for Interval-Censored Data with Cure-Rate
or without Cure-Rate Model
Three-Stage Least Squares Estimation for Systems of Simultaneous
Equations
Execution Functions for Tick Data Back Test
Functions for timing R scripts, as well as implementations of
Stack and List structures
Create dynamic reports using a TiddlyWiki template
Tide Analysis and Prediction of Predominantly Semi-Diurnal Tides
A Grammar for Turning 'JSON' into Tidy Tables
Easily Tidy Data with `spread()` and `gather()` Functions
Load Census TIGER/Line Shapefiles into R
Hidden Markov Models for ChIP-on-Chip Analysis
Characterization of functional genes in complex microbial
communities using tiling DNA microarrays
Rmetrics - Chronological and Calendar Objects
Time Delay Estimation for Stochastic Time Series of
Gravitationally Lensed Quasars
Time-ordered and time-aggregated network analyses
Flexible Regression Models for Survival Data
Time-Dependent ROC Curve and AUC for Censored Survival Data
Bootstrap computations for time series objects
Detecting Differentially Expressed Genes in Time Course RNA-Seq
Data
Rmetrics - Financial Time Series Objects
Manage Time Series with R and PostgreSQL
Seasonal/Sequential (Instants/Durations, Even or not) Time
Series
Interface to the TimeTree of Life Webpage
Target Inhibition Interaction using Maximization and
Minimization Averaging
Fitting Separable Nonlinear Models in Spectroscopy and
Microscopy
TIMe Series Analysis and Control package
Tinflex - Universal Non-Uniform Random Number Generator
Using Tip Dates with Phylogenetic Trees in BEAST
Automated measure-based classification for flint tools
Titration analysis for mass spectrometry data
Acid/Base, Complexation, Redox, and Precipitation Titration
Curves
Pairwise Distance Estimation with TKF91 and TKF92 Model
Effects under Linear, Logistic and Poisson Regression Models
with Transformed Variables
Linear Student-t Mixed-Effects Models with Censored Data
Two-level normal independent sampling estimation
Template Model Builder: A General Random Effect Tool Inspired by
ADMB
Targeted Maximum Likelihood Estimation for Network Data
Targeted Learning of a NP Importance of a Continuous Exposure
Import texts from files in the Alceste format using the tm text
mining framework
Import Articles from 'Europresse' Using the 'tm' Text Mining
Framework
Import articles from Factiva using the tm text mining framework
Import Articles from LexisNexis Using the tm Text Mining
Framework
Retrieve Structured, Textual Data from Various Web Sources
Truncated Multivariate Normal and Student t Distribution
Temporal Network Autocorrelation Models (TNAM)
Software for Analysis of Weighted, Two-Mode, and Longitudinal
Networks
Big Data in-Database Analytics with Teradata Aster
Total Operating Characteristic Curve and ROC Curve
Fundamental Definitions and Utilities of the Time Oriented
Language (TOL)
Functions for Calculating Tolerance Intervals
Function for Converting Cardinal to Ordinal Numbers by Adding a
Language Specific Ordinal Indicator to the Number
Inference, Aggregation and Visualization for Top-K Ranked Lists
Implementation of the hydrological model TOPMODEL in R
Gene Set Analysis Exploiting Pathway Topology
TOPSIS method for multiple-criteria decision making (MCDM)
Instrumental Variables Two Stage Least Squares estimation
Experimental design for binary toxicity tests
Estimation of Transition Probabilities for the Illness-Death
Model
Estimation of Transition Probabilities in Multistate Models
A Tool for Downloading Functional Traits Data for Plant Species
Infrastructure for Running and Cycling Data from GPS-Enabled
Tracking Devices
Reconstruct animal tracks from magnetometer, accelerometer,
depth and optional speed data
A package for reading, manipulating and visualising magnetic
resonance images
Tree Ring Analysis of Disturbance Events in R
An interface for creating GUIs modeled in part after traits UI
module for python
A Predictive Model for Trait Based Community Assembly of Plant
Species
Trajectory Miner: a Toolbox for Exploring and Rendering
Sequences
TRFLP Analysis and Matching Package for R
Automated Transcription of Audio Files Through the HP IDOL API
Bindings for the Google and Microsoft Translation APIs
Toolset for Translating SPSS-Syntax to R-Code
R Manuals Literally Translated in Korean
Fit Linear Transformation Models for Censored Data
Implementation of Transportation Problem Algorithms
Sensitivity Analysis for Causal Inference
Discovery, Access and Manipulation of 'TreeBASE' Phylogenies
Numerical Calibration of Proxy-Climate Relationships
Centre of Mass Assessment and Consolidation of Trees
An Adaptive Multi-Scale Basis for High-Dimensional, Sparse and
Unordered Data
Estimating birth and death rates based on phylogenies
Exact and Asymptotic K Sample Permutation Test
'dplyr' Functionality for Matched Tree and Data Objects
Statistical Exploration of Landscapes of Phylogenetic Trees
Simulating Phylogenetic Trees under a General Model
Methods for Tree-based Local Adaptive Thresholding
Create and Navigate Large Multi-Panel Visual Displays
Non-Parametric Trend Tests and Change-Point Detection
Provides the Standard Distribution Functions for the Triangle
Distribution
Analysing and Visualizing Tribology Measurements
Some basic facilities for ternary fields and plots
Propensity Score Matching of Non-Binary Treatments
An Implementation of Common Response Time Trimming Methods
Trimmed opinion pools of trees in a random forest
A data smoothing approach to explore and test gene-environment
interaction in case-parent trio data
Tools for the Analysis of Animal Track Data
Triangulation of Irregularly Spaced Data
Metropolis Sampler and Supporting Functions for Estimating
Animal Movement from Archival Tags and Satellite Fixes
Social Relation Model (SRM) Analyses for Single or Multiple
Groups
Pseudo-Vectors Containing All Permutations, Combinations and
Subsets of Objects Taken from a Vector
Functions and Datasets to Accompany the Book "The R Software:
Fundamentals of Programming and Statistical Analysis"
Implementation the TrueSkill algorithm in R
GoF tests allowing for left truncated data
Semi-parametric estimators of truncated regression models
Trust Region Optimization for Nonlinear Functions with Sparse
Hessians
Calculate normalising constants for Bayesian time series models
Tools for Blind Source Separation for Time Series
Likelihood-ratio Tests for Two-Sample Comparisons
Nonlinear Time Series Models with Regime Switching
Time Series Analysis and Computational Finance
Entropy Based Analysis and Tests for Time Series
Mining Univariate and Multivariate Motifs in Time-Series Data
'TSdbi' Extensions to Wrap Miscellaneous Data Sources
Time Series Modeling for Air Pollution and Health
Tools for Temporal Social Network Analysis
T-distributed Stochastic Neighbor Embedding for R (t-SNE)
Transposable Sphering for Large-Scale Inference with Correlated
Data
Improved Prediction Intervals for ARIMA Processes and Structural
Time Series
Instance Feature Calculation and Evolutionary Instance
Generation for the Traveling Salesman Problem
Functions for Baseline-Based Time Series Prediction
'TSdbi' Extension to Connect with 'SDMX'
Generic SQL Helper Functions for 'TSdbi' SQL Plugins
Ternary Search Tree for Auto-Completion and Spell Checking
Fitting and Predict Time Series Interactive Laboratory
Temporal Trend Analysis Graphical Interface
Sampling and Calculating the First and Second Moments for the
Doubly Truncated Multivariate t Distribution
Master Curve Estimates Corresponding to Time-Temperature
Superposition
Genome-wide DNA methylation sites screening by use of training
and testing samples
Tufte-style html document format for rmarkdown
Multi-objective parameter tuning for classifiers
Find every match, or orphan, duplicate, triplicate, or other
replicated values
A Suite of Convergence Acceleration Schemes for EM, MM and other
fixed-point algorithms
Turn vectors and lists of vectors into indexed structures
Convert R Markdown Files to DataCamp Light HTML Files
Lumped Hydrological Model for Education Purposes
Toolkit for Weighting and Analysis of Nonequivalent Groups
Twitter Collector and Export to 'SQLite', 'postGIS' and 'GIS'
Format
Interactive manipulation of R expressions
Nonparametric test of equality between two copulas
Estimate Gene-Treatment Interaction Exploiting Randomization
Compute thresholds and power for two-stage gwas
Conditional Logistic Regression: A Two-Step Estimation Method
Functions to Simulate and Conduct Dose-Escalation Phase I
Studies
UC Berkeley graduate division thesis template
Bayesian Analysis of a Non-Informative Parametrization for
Gaussian Mixture Distributions
Structural Equation Modelling in R with 'OpenMx'
Function estimation via Unbalanced Haar wavelets
Implements Models of Uncertainty into the Interpolation
Functions
Tools for Creating Universal Numeric Fingerprints for Data
Stereological Unfolding for Spheroidal Particles
Univarate shrinkage prediction in the Cox model
Abbreviate Strings to Short, Unique Identifiers
Finding Unique or Duplicated Rows or Columns for Atomic Matrices
Unimodal penalized spline regression using B-splines
Assessment and Evaluation of Formations in United
Updated Classification Methods using Unlabeled Data
Unsupervised Photometric Membership Assignment in Stellar
Clusters
A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets
Unit Root and Cointegration Tests for Time Series Data
R Wrapper for the 'Bit.ly', 'Goo.gl' and 'Is.gd' URL Shortening
Services
Vectorised Tools for URL Handling and Parsing
Unit Root Tests for Seasonal Time Series
Historical and Contemporary Boundaries of the United States of
America
Create US cancer datasets from SEER, IARC, and US Census data
US Census 2000 Designated Places Shapefiles and Additional
Demographic Data
US Census 2000 Tract Level Shapefiles and Additional Demographic
Data
Uncertainty Analysis for Species Distribution Models
Data Sets, Etc. for the Text "Using R for Introductory
Statistics", Second Edition
Model-based clustering via mixtures of unrestricted skew-t
factor analyzer models
Analyze System Scalability with the Universal Scalability Law
Construct, Evaluate and Plot Value and Utility Functions
Tools for generating and handling of UUIDs
Unbinned weighted histogram analysis method (UWHAM)
Vaccination Activities Coverage Estimation Model
One-Sided Multivariate Testing Procedures for Rating Systems
Results from the Virginia Lottery Draw Games
Variational inference for Bayesian variable selection
Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Computes value at risk and expected shortfall for over 100
parametric distributions
VAR modelling: estimation, testing, and prediction
Capture the Genes and Variants Related to a Genetic Disease from
Public Databases
Testing of genotypic variance heterogeneity to detect
potentially interacting SNP
An Algorithm for Morphometric Characters Selection and
Statistical Validation in Morphological Taxonomy
Variable Selection for Model-Based Clustering using the
Integrated Complete-Data Likelihood of a Latent Class Model
Sign Restrictions, Bayesian, Vector Autoregression Models
Pricing a variance swap on an equity index
Transform Definition of Variables to R Scripts
Variational Bayes Discrete Mixture Model
Variational Bayes Latent Position Cluster Model for Networks
Variational Bayes Spike Regression Regularized Linear Models
Tools for Working with Variant Call Format ('VCF') Files
Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Variance Dispersion Graphs and Fraction of Design Space Plots
Variance dispersion graphs and Fraction of design space plots
for response surface designs
Plots of Scaled Prediction Variances for Response Surface
Designs
like base::sets tools but keeps duplicate elements
Vector analysis using graphical and analytical methods in 2D
Vector analysis using graphical and analytical methods in 3D
Tools to Encode Visualizations with the 'Grammar of
Graphics'-Like 'Vega-Lite' 'Spec'
Static and Dynamic 3D Plots for the 'vegan' Package
Access Vegetation Databases and Treat Taxonomy
Jost Diversity Measures for Community Data
Generate High-Resolution Venn and Euler Plots
Query and Install Specific Versions of Packages on CRAN
Creates Vertex Similarity Matrix for an Undirected Graph
Vector Generalized Linear and Additive Models
Discrimination/Classification in very high dimension with linear
and quadratic rules
Vertical and Horizontal Inheritance Consistence Analysis
VIF Regression: A Fast Regression Algorithm For Large Data
Detecting Change-Points via VIFCP Method
Variational Bayesian Inference for Genome-Wide Regression
Visualization and Imputation of Missing Values
Multivariate Dependence Modeling with Vines
Combination of violin plot with mean and standard deviation
1-D Scatter Plots with Jitter Using Kernel Density Estimates
Plot Categorical Data Using Quasirandom Noise and Density
Estimates
Default Color Maps from 'matplotlib' (Lite Version)
Generation of Virtual Species Distributions
Network Visualization using 'vis.js' Library
Graph Probability Distributions with User Supplied Parameters
and Stats
Visualisation of Clusters in Multivariate Data
Fitting Routines for the Vitality Family of Mortality Models
Graphical visualization tools for complex observational data
with focus on health sciences (VizOR)
Frequency Matrix Approach for Assessing Very Low Frequency
Variants in Sequence Records
Variable Length Markov Chains ('VLMC') Models
GUI Tools to Process, Analyze and Plot Fisheries Data
Using V-algorithm and Newton-Raphson Method to Obtain
Multiple-objective Optimal Design
Generic Voss algorithm (random sequential additions)
Vowel Manipulation, Normalization, and Plotting
Metrics extraction of trees from T-LiDAR data
Genome Scans to Accommodate and Target Genetic and Non-Genetic
Effects on Trait Variance
Change Point Estimation for Regression with Varying Segments and
Heteroscedastic Variances
Generate 3D visualizations for data exploration on the web
Variance Ratio tests and other tests for Martingale Difference
Hypothesis
Variable selection for clustering and classification
A Collection of Tools for the Analysis of Remote Acoustic
Telemetry Data
Visualization of Univariate Data for Comparison
Useful functions for visual word recognition research
A Graphical Tool for Wavelet (Cross) Correlation and Wavelet
Multiple (Cross) Correlation Analysis
R Interface to W3C Markup Validation Services
Multivariate Weather-State Approach Conditionally Skew-Normal
Generator
A package to simulate constrained phenotypes under a disease
model H1
Autocorrelation and Heteroskedasticity Correction in Fixed
Effect Panel Data Model
Random Walks in the Intersection of Hyperplanes and the
N-Simplex
Weaning Age Reconstruction with Nitrogen Isotope Analysis
Visualisation and analysis of output files of the hydrological
model WASIM
Actual Evapotranspiration with Energy Balance Models
An R Package for Retrieval, Analysis, and Anomaly Calculation of
Daily Hydrologic Time Series Data
Fetch and Analyze Data from 'WaterML' and 'WaterOneFlow' Web
Services
Spatial Watershed Aggregation and Spatial Drainage Network
Analysis
Computes credible intervals for Bayesian wavelet shrinkage
A package of functions for computing wavelet filters, wavelet
transforms and multiresolution analyses
Wavelet routine for multiple correlation
Data Estimation using Weighted Averages of Multiple Regressions
Basic wavelet routines for one-, two- and three-dimensional
signal processing
Wild Binary Segmentation for Multiple Change-Point Detection
Multiple Change-Point Detection for Nonstationary Time Series
SOM Networks for Comparing Patterns with Peak Shifts
Detection of QTL effects in a small mapping population
World Development Indicators (World Bank)
Functions to Convert Between Weather Metrics
Tools for Handling and Scrapping Instant Weather Forecast Feeds
A New Format for Lossless and Lossy Image Compression
Tools for Reading Formatted Access Log Files
Weighted Portmanteau Tests for Time Series Goodness-of-fit
Weighted Scores Method for Regression Models with Dependent Data
A Hydraulics Package to Compute Open-Channel Flow over Weirs
Weighted Linear Fixed Effects Regression Models for Causal
Inference
Whole Genome Average Interval Mapping for QTL Detection using
Mixed Models
Wilcoxon based gene set enrichment analysis
WhatIf: Software for Evaluating Counterfactuals
{{mustache}} for R, logicless templating
White Matter Normalization for Magnetic Resonance Images using
Whitestripe
R Client for the World Health Organization API
Username, Full Name, Email Address, 'GitHub' Username of the
Current User
High-Speed Processing of VCF, FASTA and Alignment Data
Weighting by Inverse Distance with Adaptive Least Squares for
Massive Space-Time Data
Penalized Regression with Polynomial Basis Expansions
Functions and datasets of the german WikiBook "GNU R"
Public Subject Attention via Wikipedia Page View Statistics
Wilcoxon-based variable selection in cross-validation
Calculate Indices of Dynamic Interaction for Wildlife Telemetry
Data
Best Hand Analysis for Poker Variants Including Wildcards
windex: Analysing convergent evolution using the Wheatsheaf
index
Run Code 'With' Temporarily Modified Global State
Convert Between Spatial Objects and Well-Known Binary Geometry
GUI Implementing Bayesian Working Memory Models
Discriminant Analysis Methods by Weight Mahalanobis Distance and
bayes
Wavelet Leaders in Multifractal Analysis
Wavelet Methods for Time Series Analysis
Computes Weight of Evidence and Information Values
Matches words in one file with words in another file
Classical word pools used in studies of learning and memory
IRT Item-Person Map with 'ConQuest' Integration
Function for exporting data to SNNS pattern files
Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
A Collection of Robust Statistical Methods
Functions for working with Worldwide Reference System (WRS)
Weighted Random Sampling without Replacement
Benchmark and Correctness Data for Weighted Random Sampling
Without Replacement
Who Are You? Bayesian Prediction of Racial Category Using
Surname and Geolocation
Weighted Subspace Random Forest for Classification
Weighted SVM with boosting algorithm for improving accuracy
Competing Risks Regression Models with Covariate-Adjusted
Censoring Weights
R Wrapper for the 'Wufoo.com' - The Form Building Service
Wegener Center Climate Uncertainty Explorer
x12 - wrapper function and structure for batch processing
Provide the 'x13ashtml' Seasonal Adjustment Binary
Extraction of Business Financial Information from 'XBRL'
Documents
Extensions of Exponential Random Graph Models
Common Infrastructure for Extensions of Exponential Random Graph
Models
Interface to the XGobi and XGvis programs for graphical data
analysis
Exploring Genomic Relations at the Gene and SNP Level Through
Enrichment, Similarity and Network Analysis
Plotting ggplot2 Graphics in an XKCD Style
JAR dependencies for the XLConnect package
Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
Package required POI jars for the xlsx package
A Toolbox for Multivariate Meta-Analysis
Xiaobei's miscellaneous classes and functions
Tools for Parsing and Generating XML Within R and S-Plus
Markov Random Fields for High-Throughput Genetics Data
Exact Goodness-of-Fit Test for Multinomial Data with Fixed
Probabilities
Tools for Analyzing Crossover Interference
Tools for Nonlinear Mixed-Effect Model Building and Diagnostics
Assessing Functional Impact on Gene Expression of Mutations in
Cancer
Terminal Text Formatting Using Escape Sequences
Calculates Credit Risk Valuation Adjustments
A Method for Creating Xylophone-Like Frequency Density Plots
Yet Another Canonical Correlation Analysis Package
Nearest Neighbor Observation Imputation and Evaluation Tools
A Simple Wrapper for the k-Means Library Yakmo
Data exploration tools from Yale University
Methods to convert R data to YAML and back
Yield curve or zero-coupon prices interpolation and
extrapolation
Modelling and estimation of the yield curve
Analyze Cricket Performances Based on Data from Cricsheet
Plant Architectural Analysis with Yplant and QuasiMC
The Short-Term and Long-Term Hazard Ratio Model for Survival
Data
A Simple Approach to Scale Gene Expression Data Derived from
Different Platforms for Integrated Analyses
Imputation of Zeros and Nondetects in Compositional Data Sets
ZeBook Working with dynamic models for agriculture and
environment
Functions to Compute Compositional Turnover Using Zeta Diversity
Bayesian Inference for Zero-Inflated Count Models
R Interface to Zillow Real Estate and Mortgage Data API
Zero-Inflated Models for Count Time Series with Excess Zeros
Statistical models for word frequency distributions
Seismic Reflection and Scattering Coefficients
Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Analytical Tools for Zooarchaeological Data
Analysis of numerical zooplankton images
Reproducible, Accessible & Shareable Species Distribution
Modelling
Dynamic Plots for Time Series Forecasting
Zebra-Striped Tables in LaTeX and HTML Formats
'Expectation-Maximization Binary Clustering for Behavioural
Annotation', (submitted to PLOS ONE)
For source code, development versions and issue tracker see
https://github.com/hofnerb/gamboostLSS
http://www.hiplar.org , http://icl.cs.utk.edu/magma/ ,
http://icl.cs.utk.edu/plasma/,
http://www.nvidia.com/object/cuda_home_new.html
The publishers web page is
http://www.crcpress.com/product/isbn/9781482204582
http://www.kasparrufibach.ch ,
http://www.ceremade.dauphine.fr/~fadoua ,
http://www.math.yorku.ca/~hkj
http://multcomp.R-forge.R-project.org The publishers web page is
http://www.crcpress.com/product/isbn/9781584885740
http://en.opasnet.org/w/Main_Page ,
http://en.opasnet.org/w/Modelling_in_Opasnet ,
http://en.opasnet.org/w/OpasnetUtils
https://github.com/abarbour/psd, Barbour and Parker (2014):
http://dx.doi.org/10.1016/j.cageo.2013.09.015, Riedel and
Sidorenko (1995): http://dx.doi.org/10.1109/78.365298
http://www.r-project.org, http://groovy.codehaus.org/,
http://www.groovy-lang.org/indy.html,
http://docs.groovy-lang.org/latest/html/api/index.html,
https://coherentlogic.com/middleware-development/rgroovy?source=cran
https://r-forge.r-project.org/projects/rnomads/ (subversion
repository)
http://www.unc.edu/~haksaeng/rNOMADS/rNOMADS_dods_examples.pdf
(GrADS-DODS examples)
http://www.unc.edu/~haksaeng/rNOMADS/rNOMADS_grib_examples.pdf
(grib examples)
The database is described at:
http://astro.df.unipi.it/stellar-models/
Wing Wong's lab (http://www.stanford.edu/group/wonglab/) &
Stanford Genome Technology Center
(http://gluegrant1.stanford.edu/~DIC/)
Orphaned on 2012-07-18 as the original maintainer, Romain Francois <romain@r-enthusiasts.com>, is unresponsive.
Orphaned on 2014-10-16 at the request of the maintainer.
Orphaned on 2013-11-12 as the maintainer repeatedly failed to respond to requests for valid portable C++ code.
Orphaned on 2009-02-23 as maintainer address <amy_kapp@hotmail.com> bounced.
Orphaned and repaired on 2014-07-21 as Fortran errors were ignored.
Orphaned on 2014-01-12 as maintainer address <mpineda@math.ualbeta.ca> bounced.
Orphaned on 2014-02-07 as the maintainer could not maintain it officially any more.
Orphaned on 2014-12-07 as maintainer address <chenjun@mail.med.upenn.edu> bounced.
Orphaned on 2011-08-11 as requested by the original maintainer, Tamas K Papp <tpapp@princeton.edu>.
Orphaned on 2012-01-10 as maintainer address bounces and maintainer is untraceable.
Orphaned on 2013-12-20 as requested by the maintainer <rgentlem@gmail.com>.
Previous maintainer address bounced in Oct 2012, maintainer is unresponsive so orphaned 2012-12-06.
Orphaned on 2012-12-21 as the maintainer failed to respond to requests for an update for R >= 2.14.0
Orphaned on 2014-12-07 as maintainer address <sarah.gerster@isb-sib.ch> bounced.
Orphaned on 2013-12-21 as maintainer address <mgerster@health.sdu.dk> bounced.
Orphaned on 2015-06-20 as incomplete maintainer address was not corrected despite reminders.
Orphaned on 2014-08-15 as requested by the original maintainer.
Orphaned on 2015-03-01 and corrected by the CRAN team as misuse of \donttest was not corrected.
Orphaned on 2014-12-07 as maintainer address <shaoyu.li@stjude.org> bounced.
Removed on 2013-03-02 for licence incompatibility.
Orphaned on 2013-03-22: the maintainer is unresponsive.
Orphaned on 2014-06-16 as the maintainer address bounced.
abctools, Bagidis, BCBCSF, depth, dgmb, EBMAforecast, fractaldim, hyperdirichlet, informR, interplot, LSDinterface, magic, MetStaT, mlogitBMA, multicon, MultiPhen, multipol, mvmesh, mvProbit, plfm, population, pop.wolf, RcmdrPlugin.EACSPIR, RcmdrPlugin.EBM, RcmdrPlugin.epack, simSummary, spatialfil, spBayes, wux, zoib
ade4TkGUI, adegenet, adehabitat, adehabitatHR, adehabitatHS, adehabitatLT, adephylo, cati, DDD, ecospat, ENiRG, FactoClass, FD, genoPlotR, oncomodel, pamctdp, seqinr, sideChannelAttack, treescape, VARSEDIG
mmod, pegas, PopGenReport, poppr, strataG
GNE, lba, LEAPFrOG, likelihoodAsy, mbbefd
adhoc, apex, apTreeshape, BAMMtools, bayou, BioGeoBEARS, BPEC, Canopy, caper, cati, coalescentMCMC, convevol, corHMM, DAMOCLES, DDD, DiscML, distory, diversitree, ecospat, expoTree, FD, geiger, geomorph, GUniFrac, HAP.ROR, hisse, HyPhy, ips, iteRates, jrich, laser, MCMCglmm, metricTester, MiSPU, MonoPhy, MPSEM, mvMORPH, mvSLOUCH, OUwie, paleotree, pastis, pegas, perspectev, pez, phangorn, phyclust, phyloclim, phylolm, phylotools, phytools, picante, PVR, RADami, rase, recluster, RNeXML, Rphylip, Rphylopars, Rsampletrees, SeqFeatR, spider, strap, surface, TESS, treebase, TreePar, treeplyr, treescape, TreeSim, windex
arulesNBMiner, arulesSequences, arulesViz, ibmdbR, rCBA, recommenderlab
BaM, bayesMCClust, compositions, mpbart, ocomposition, siar
BinNonNor, GNE, LIHNPSD, mederrRank, NPCD, PoisBinNonNor, PoisBinOrdNonNor, PoisNonNor, RobPer
BatchJobs, cmaesr, flacco, mlr, netgen, smoof
bigalgebra, biganalytics, biglasso, bigpca, bigtabulate
bnstruct, cdb, CHCN, cherry, couchDB, GENEAread, muma, R4CouchDB, RCurl
addhaz, aods3, attribrisk, BACprior, bootES, boottol, cardidates, CircStats, classyfire, Comp2ROC, Compind, cramer, dawai, DCluster, dhglm, DLMtool, equivalence, eventstudies, experiment, fishmethods, fishmove, frailtypack, gb, HPbayes, imputeYn, IUPS, joineR, laeken, LCAextend, mdhglm, MDSGUI, mem, moveHMM, nFactors, Oncotree, ordinalCont, pastecs, plsgenomics, popKorn, prLogistic, PsumtSim, QuantPsyc, quickpsy, R2WinBUGS, random.polychor.pa, reglogit, relaimpo, rich, sampSurf, simboot, simpleboot, SiZer, survrec, TestSurvRec, timesboot, titan, tlm, truncSP, verification, wBoot
AtelieR, brainGraph, fit4NM, gWidgetsRGtk2, meta4diag, MetSizeR, PKgraph, playwith, rsgcc, RunuranGUI, sdcMicroGUI, WMCapacity
AER, alr3, alr4, bartMachine, bgmm, candisc, CrypticIBDcheck, DAMisc, Deducer, DiagTest3Grp, DistatisR, DJL, epr, extRemes, genridge, granova, heplots, hysteresis, ibd, ITEMAN, lmSupport, mosaic, muma, mvinfluence, papeR, pequod, phia, quantification, Rcmdr, RcmdrMisc, RcmdrPlugin.SM, seeg, specificity, stepp, systemfit, VARSEDIG
adabag, conformal, fscaret, hsdar, ordBTL
cmrutils, crn, ensembleBMA, ensembleMOS, ImportExport, Interpol.T, kerdiest, MicSim, PhysActBedRest, RH2, RMAWGEN, StreamMetabolism, ViSiElse
adehabitatLT, CircOutlier, LogicForest, moveHMM, verification
CircOutlier, depth, isocir, localdepth, NPCirc, SOPIE, wle
CepLDA, clv, ddalpha, EILA, geneSignatureFinder, kmlShape, KODAMA, kohonen, longitudinalData, mda, Modalclust, multisom, protoclass, svapls, wccsom
abodOutlier, AdaptFit, AssocTests, bios2mds, ccChooser, clusterSim, ClusterStability, clv, clValid, COMMUNAL, CORM, dbstats, divo, dpmixsim, FunCluster, gclus, geneSignatureFinder, GLDEX, ICGE, isopam, knnGarden, labdsv, maptree, MiSPU, MSeasy, NMF, nomclust, optpart, pamr, qrfactor, RPMM, spa, tclust, TraMineRextras, treeClust, TSclust, WeightedCluster
kml, kml3d, longitudinalData, MOCCA, wskm
crrp, crrstep, crskdiag, currentSurvival, gcerisk, missDeaths
adaptMCMC, adaptsmoFMRI, anominate, B2Z, BaM, BANOVA, bayesDccGarch, BayesFactor, BayesLCA, bayespref, BayesSAE, bayesSurv, Bayesthresh, bayou, BAYSTAR, Bergm, bisoreg, bmk, boral, coalescentMCMC, codadiags, cplm, cubfits, dclone, eiPack, elrm, endorse, FME, gemtc, HelpersMG, HSROC, HybridMC, hzar, iFad, InSilicoVA, lira, MasterBayes, mcgibbsit, MCMCglmm, MCMC.OTU, MCMCpack, mcmcplots, MCMC.qpcr, mcsm, metamisc, ocomposition, PhaseType, phcfM, phenology, popReconstruct, prevalence, R2MLwiN, R2WinBUGS, ramps, relevent, rjags, season, siar, SPACECAP, spatial.gev.bma, spBayes, spTDyn, stochvol, superdiag, TESS, Ultimixt, WMCapacity, zoib
asht, kaps, pAnalysis, RcmdrPlugin.coin, uplift
biclust, BiplotGUI, coloc, frontiles, ips, mixAK, prefmod, R2BayesX, RcmdrPlugin.SM, snpStatsWriter, spacodiR, tourrGui, VIM, ViSiElse, W2CWM2C
AssocTests, BayClone2, bayess, bgmm, DJL, fcd, FLR, forensic, GameTheory, genetics, MetaDE, NSM3, PoissonSeq, prob, QuACN, RMallow, SNPmaxsel, steadyICA, symmoments
gskat, iGasso, LGEWIS, LGRF, MiST, pedgene, rvTDT, skatMeta
cgam, ConSpline, DoubleCone, isotonic.pen, ShapeChange, ShapeSelectForest
BivarP, censorcopula, ClusterStability, CoClust, CoImp, gofCopula, HAC, HiDimMaxStable, lcopula, RGENERATEPREC, RMRAINGEN, SemiParSampleSel, vines
arf3DS4, BinNonNor, BinNor, care, clustrd, EDISON, FRB, FRCC, GeneNet, GLSME, Hotelling, HPbayes, idm, kcirt, leapp, longitudinal, MAVTgsa, mgpd, miRtest, MultiOrd, mvMORPH, mvSLOUCH, netgsa, OrdNor, penalizedSVM, PoisBinNonNor, PoisBinOrd, PoisBinOrdNonNor, PoisBinOrdNor, PoisNonNor, PoisNor, qtlhot, sda, sideChannelAttack, SMFI5, st, ttScreening
spatialTailDep, SphericalCubature, stppResid, symmoments, yuima
AF, ARTP2, cffdrs, cvAUC, drgee, edgeRun, EurosarcBayes, greport, hisse, iemisc, lookupTable, orgR, panelaggregation, popEpi, psidR, Rbitcoin, robCompositions, sdcMicro, simPop, slackr, splitstackshape, surveyplanning, ttwa, validateRS, vardpoor, VIM
ilc, Interpol.T, kerdiest, modiscloud, RcmdrPlugin.survival, relsurv, RMAWGEN, ROCt
biglm, datamap, filehashSQLite, ODB, ora, RecordLinkage, RJDBC, RMySQL, ROracle, RPostgreSQL, RSQLite, RSQLServer, sqlutils
DeducerExtras, DeducerPlugInExample, DeducerPlugInScaling, DeducerSpatial, DeducerSurvival, DeducerText
adehabitatHR, BiplotGUI, datautils, expp, highriskzone, ibeemd, stppResid
EcoHydRology, galts, IBHM, likeLTD, micEconCES, quickpsy, selectMeta
AquaEnv, BacArena, bvpSolve, DAMOCLES, DDD, deTestSet, diffEq, DivE, ecolMod, ecosim, embryogrowth, EpiModel, expoTree, FME, growthrates, hgm, hisse, insideRODE, neuRosim, nlmeODE, pauwels2014, phaseR, primer, PSM, ReacTran, scaRabee, simecol, SoilR, TDCor, TESS, TreePar, tseriesChaos, ZeBook
DiceEval, DiceOptim, DiceView, fanovaGraph, GPareto, KrigInv, MuFiCokriging
blockmodels, ElstonStewart, gWidgets2, gWidgets2tcltk, gWidgetstcltk, LLSR, OpenMx, traitr
distrEllipse, distrEx, distrMod, distrRmetrics, distrSim, distrTeach, RandVar, RobAStBase, ROptEst, ROptEstOld, Statomica
distrEllipse, distrMod, distrTeach, RandVar, RobAStBase, ROptEst, ROptEstOld
DoE.wrapper, FrF2, pid, RcmdrPlugin.DoE, support.CEs
BANFF, dCovTS, gdm, GenCAT, GiNA, MixRF, OmicKriging, perspectev, PTE, ramsvm, randomGLM, Rlof, RVPedigree, sdcTarget, SDDE, sms, turboEM, unbalanced, VTrack
censusr, chunked, efreadr, GenCAT, ggmcmc, manifestoR, mosaic, PogromcyDanych, poplite, quickpsy, SEERaBomb, tcR, treeplyr, turfR, vqtl
BayesLCA, bayesMCClust, bios2mds, BSDA, classyfire, ClueR, clustrd, conformal, dad, eegAnalysis, flip, gskat, InventorymodelPackage, KODAMA, MAclinical, mlDNA, obliqueRF, parallelSVM, PASWR, penalizedSVM, RMediation, tiger, VHDClassification
betaper, CrypticIBDcheck, FreeSortR, lvm4net, mada, mdsdt, MetabolAnalyze, metamisc, RAMpath, sigloc, SMPracticals
approximator, BACCO, calibrator, cmvnorm, lmmlasso, MM
Bergm, blkergm, CCMnet, ergm.count, ergm.ego, ergm.graphlets, ergm.rank, ergm.userterms, hergm, latentnet, lvm4net, statnetWeb, tergm, VBLPCM, xergm.common
condmixt, crackR, ddst, evt0, mgpd, Renext, ROptEstOld, truncdist, vqtl
ClustGeo, EnQuireR, Factoshiny, RcmdrPlugin.FactoMineR, SensoMineR, TextoMineR
AnalyzeFMRI, fastHICA, gogarch, icaOcularCorrection, isva, rgr
distrRmetrics, fArma, fAsianOptions, fAssets, fBonds, fCertificates, fCopulae, fExoticOptions, fExtremes, fGarch, fMultivar, fNonlinear, fOptions, fPortfolio, fRegression, fTrading, fUnitRoots, HBSTM, LSMonteCarlo, MetFns, rsgcc, Statomica
Actigraphy, CCA, CollocInfer, cyphid, fdatest, fda.usc, FDRreg, Funclustering, funFEM, funHDDC, geofd, gpDDE, GPFDA, mar1s, pencopula, pendensity, penDvine, quantreg.nonpar, RFgroove, sde, sft, switchnpreg, vows
DBGSA, DiffCorr, GeneCycle, GeneNet, sda, st, TBEST
BayesSummaryStatLM, biglars, dualScale, ETLUtils, ffbase, PopGenome, propagate, RecordLinkage, sprint, tabplot
distrRmetrics, fExtremes, fNonlinear, gogarch, mleur
ASMap, BaySIC, Canopy, CCA, cmsaf, crqa, eegAnalysis, EMD, Geneland, geoelectrics, geosptdb, gptk, gwrr, highriskzone, ibeemd, LatticeKrig, LSC, mgpd, phenology, phylotools, ProbForecastGOP, R2GUESS, sGPCA, spatialfil, SpatialVx, SpherWave, spThin, stilt, SynchWave, TIMP, TrackReconstruction, UncerIn2, verification, Voss, wux
BANFF, biganalytics, cffdrs, clustvarsel, cubfits, DNMF, doMC, doMPI, doParallel, doRedis, doRNG, doSNOW, eiCompare, GA, gam, gamsel, gdm, GenCAT, GiNA, glmnet, gpmap, hdlm, hzar, localgauss, MAVTgsa, MetaPCA, MetaQC, missForest, MixRF, multicon, PAGWAS, parfossil, PAWL, penDvine, permGPU, perspectev, PortfolioAnalytics, QuantumClone, ramsvm, randomGLM, remote, Rlof, RVPedigree, s4vd, sdcTarget, SDDE, selfingTree, sms, spatial.tools, SurvRank, survSNP, turboEM, unbalanced, vacem, VTrack
caschrono, demography, dendrometeR, Dowd, expsmooth, fma, forecTheta, forega, fpp, ftsa, hts, ilc, MAPA, Mcomp, RcmdrPlugin.epack, Rssa, StMoMo, TSPred, ZRA
AnDE, BaM, diverse, epiDisplay, psidR, rsubgroup, Rz, shapefiles, UScensus2000cdp, UScensus2000tract, UScensus2010, vegdata
ARTP2, BayesGESM, BayesSAE, brnn, clusterSEs, DCchoice, Demerelate, detect, DirichletReg, games, gmnl, Hmisc, kaps, mhurdle, mlogit, MRSP, mvctm, npsf, OutlierDC, plm, plmm, quint, Rchoice, rdd, sharx, simplexreg, smbinning, spBayes, ssym, StratSel, threg, thregI, zoib
DoE.wrapper, FrF2.catlg128, pid, RcmdrPlugin.DoE, simrel
CausalGAM, ecospat, GAMens, LSC, MapGAM, mtsdi, ProDenICA, xpose4
acid, binequality, BSagri, gamlss.add, gamlss.cens, gamlss.mx, gamlss.nl, gamlss.spatial, gamlss.tr, gamlss.util
acid, binequality, gamlss, gamlss.add, gamlss.cens, gamlss.demo, gamlss.mx, gamlss.spatial, gamlss.tr, gamlss.util, SemiParSampleSel
BigTSP, bst, ecospat, gbm2sas, mma, twang
cccrm, chromoR, COMBIA, compareGroups, enaR, genetics, iCluster, ImportExport, joineR, LeLogicielR, MixedDataImpute, mixexp, mpMap, NanoStringNorm, nCal, nonparaeff, pSI, TextoMineR, TRSbook, weights
aSPU, diffdepprop, DTComPair, gskat, JGEE, mmm, mmm2, saws
bayou, convevol, DAMOCLES, iteRates, laser, surface, TreeSim, windex
boostSeq, forensic, introgress, luca, MasterBayes
BinOrdNonNor, OrdNor, PoisBinOrd, PoisBinOrdNonNor, PoisBinOrdNor
alphashape3d, contoureR, disp2D, EDFIR, FD, Maeswrap, modQR, munsellinterpol, mvmesh, nonparaeff, RadOnc, YplantQMC
aqfig, FeedbackTS, geofd, geoRglm, lmenssp, LS2Wstat, PrevMap, StatDA
ClimClass, geospacom, move, MUCflights, osmar
ACSNMineR, alakazam, AmpliconDuo, aoristic, apsimr, bde, benchmark, biomod2, bootnet, braidReports, brms, caret, CINOEDV, cjoint, ClimClass, climwin, clustrd, coefplot, conformal, corkscrew, cowplot, crmPack, Crossover, CRTgeeDR, dae, Deducer, DepthProc, dfexplore, diffeR, dMod, dotwhisker, dslice, DTRlearn, dtwclust, earlywarnings, eeptools, ESGtoolkit, fbroc, fishmove, forestmodel, freqparcoord, gapmap, gcerisk, GenCAT, geomnet, gettingtothebottom, ggalt, ggbeeswarm, ggcorrplot, ggfortify, ggiraph, ggmap, ggmcmc, ggnetwork, ggraptR, ggrepel, ggROC, ggseas, ggsn, ggswissmaps, ggtern, gmwm, GOplot, gpmap, granovaGG, gsDesign, GSE, Hmisc, hyperSpec, idm, ifaTools, InSilicoVA, interplot, ITEMAN, LambertW, learnstats, LexisPlotR, likeLTD, likert, lmms, localgauss, lsbclust, MCMC.OTU, MCMC.qpcr, mcprofile, MergeGUI, meteogRam, MissingDataGUI, MIXFIM, mixOmics, mlr, mlxR, mosaic, MRMR, multilevelPSA, ncappc, NeatMap, nullabor, openVA, orgR, OriGen, OutbreakTools, PairedData, pAnalysis, PASWR2, pauwels2014, PAWL, PedCNV, pequod, perry, perspectev, PhaseType, pid, pipe.design, pitchRx, PKgraph, PKreport, plotly, plotROC, pointRes, PopED, popgraph, PortfolioEffectHFT, PPtreeViz, precintcon, prevR, PRISMA, profileR, ProgGUIinR, PSAboot, quadrupen, QualInt, quickpsy, RAM, randomizeR, RcmdrPlugin.KMggplot2, RJafroc, rms, robCompositions, robustHD, rorutadis, rotations, RSA, RSDA, rstan, Rz, SciencesPo, season, SEERaBomb, selfea, sglr, shazam, simmr, sinaplot, slackr, SmarterPoland, SMFI5, soc.ca, sparkTable, SparseFactorAnalysis, sparsereg, spoccutils, sprm, survminer, SWMPr, synthpop, TcGSA, tcR, tdr, timeline, TriMatch, TripleR, tspmeta, useful, userfriendlyscience, varian, vdg, vrcp, waffle, walkr, xkcd, zooaRch
hglasso, lassoscore, MInt, netgsa, rrlda, rsggm, spaceExt, sparseBC, Tsphere
AdapEnetClass, bapred, bigdata, BigTSP, BioMark, CAM, cosso, covTest, DivMelt, DTRlearn, elasso, EstHer, fcd, FindIt, glmnetcr, glmvsd, Grace, hdlm, HiCfeat, InvariantCausalPrediction, ipflasso, lassoscore, MESS, mht, MMMS, MMS, MNS, netgsa, oblique.tree, parcor, PAS, PRIMsrc, prototest, qut, refund.wave, regsel, relaxnet, RVtests, selectiveInference, SIMMS, SIS, SML, SparseLearner, sparsenet, SubLasso, widenet
logmult, multgee, prefmod, StMoMo, vcdExtra
allanvar, ARTIVA, bayesMCClust, bayess, cellVolumeDist, corkscrew, DandEFA, datautils, DensParcorr, DiagTest3Grp, ghyp, iCluster, MDplot, MetabolAnalyze, metabolomics, Meth27QC, muma, PRISMA, RCA, reGenotyper, rehh, ReorderCluster, rnaseqWrapper, ROCR, rsgcc, SubLasso, swamp, YplantQMC
ACSNMineR, climwin, ESGtoolkit, GOplot, HH, ncappc, PPtreeViz, primerTree, rorutadis, sparkTable, tcR
aws, evmix, metacor, palinsol, pgs, QRM, rGammaGamma, tggd
ASMap, bayesMCClust, Biocomb, ConsRank, crossdes, dice, GameTheory, genetics, GESTr, GSM, hier.part, HUM, iCluster, IDPSurvival, interferenceCI, iteRates, JASPAR, likeLTD, MAMA, MasterBayes, MDplot, MetabolAnalyze, modMax, muma, mvtmeta, ordBTL, orQA, PairViz, pipe.design, RCPmod, REQS, RI2by2, rnaseqWrapper, rpsychi, rvHPDT, sensory, SRRS, trioGxE, Ultimixt, WMCapacity
apt, bayesDem, dbConnect, fit4NM, gWidgetsRGtk2, gWidgetstcltk, MetSizeR, mrMLM, nCal, pmg, RenextGUI, reshapeGUI, rsgcc, RunuranGUI, sdcMicroGUI, tourrGui, traitr, WMCapacity
AtelieR, bayesDem, FAiR, fit4NM, iBUGS, MergeGUI, MetSizeR, MicroStrategyR, MissingDataGUI, mrMLM, PKgraph, playwith, pmg, reshapeGUI, RQDA, rsgcc, RunuranGUI, sdcMicroGUI, VIMGUI, WMCapacity
BOG, COMBIA, GABi, HAP.ROR, KoNLP, neuroim, orderbook, rpartitions
acid, anesrake, aspace, caschrono, cg, colorscience, compareGroups, crackR, EBMAforecast, ENmisc, EstCRM, etable, FRESA.CAD, FunCluster, funModeling, greport, greyzoneSurv, gset, ImportExport, its, lawstat, LifeHist, MEET, MicroDatosEs, nonparaeff, PredictABEL, PRIMsrc, prLogistic, pse, RcmdrPlugin.Export, RcmdrPlugin.mosaic, rms, Scale, tables, UsingR, visualFields, weights
censusr, couchDB, GAR, httping, instaR, LightningR, markmyassignment, ores, Rcolombos, request, Rfacebook, RGoogleAnalytics, RGoogleAnalyticsPremium, rHealthDataGov, Rlinkedin, slackr, SmarterPoland, TMDb, tumblR, whoapi, WikipediaR, WikipediR
agop, ARTIVA, bc3net, BDgraph, BPEC, brainGraph, c3net, camel, cccd, CePa, CINOEDV, clickstream, cooptrees, corclass, corkscrew, cvxbiclustr, cvxclustr, dcGOR, DiffCorr, dils, disparityfilter, dnet, dpa, ebdbNet, editrules, ESEA, fanovaGraph, fastclime, FisHiCal, flare, G1DBN, gdistance, GeneReg, genlasso, ggm, gRapfa, hglasso, huge, igraphtosonia, InteractiveIGraph, iRefR, JGL, linkcomm, locits, micropan, mlDNA, MNS, modMax, mRMRe, NEpiC, netassoc, netgsa, NetSwan, optrees, OutrankingTools, PAGI, pathClass, picasso, popgraph, PROFANCY, ProNet, qtlnet, RCA, ReliabilityTheory, rEMM, rgexf, RNetLogo, RNewsflow, ror, RWBP, sand, SDDE, secrlinear, SEMID, sglasso, shp2graph, SOMbrero, spacejam, SubpathwayGMir, SubpathwayLNCE, synRNASeqNet, tcR, timeordered, tnet, wfg, XGR
Bchron, BMA, cxxfunplus, imprProbEst, mkin
clustvarsel, doMC, doMPI, doParallel, doRedis, doSNOW, GA, hdlm, itertools, MetaQC, parboost, SDDE, sms, spatial.tools
GAR, jSonarR, RGoogleAnalyticsPremium, rHealthDataGov, slackr, TMDb, WikipediR
CVST, DTRlearn, kappalab, netClass, pathClass, probsvm, svmadmm, SVMMaj
CHsharp, DiagTest3Grp, EMMIXskew, FCGR, gammSlice, GenKern, GoFKernel, ICE, IsoCI, ks, MEET, mpm, mpmi, qualV, stpp, TPmsm
ElstonStewart, FamEvent, Familias, LCAextend, MasterBayes, paramlink, pedantics, pedgene
BrailleR, EasyHTMLReport, OutbreakTools, PopGenReport, sdcMicro, SOMbrero, spThin, svSweave, tufterhandout
AdapEnetClass, aml, covTest, cumSeg, elasticnet, ExactPath, FeaLect, FindIt, GPC, gwrr, monomvn, multiPIM, OTRselect, PAGWAS, pass, qut, relaxo, RXshrink, scalreg, sealasso, sisVIVE, spikeslab
abcdeFBA, abd, adaptTest, agsemisc, ASMap, assist, backtest, barcode, bayespref, BayesSAE, bc3net, bgmm, biclust, bifactorial, bigdata, biotools, BSDA, camel, cardidates, caret, cem, coalescentMCMC, COMBIA, compeir, ConvergenceConcepts, Cubist, cvTools, cwhmisc, DAAG, dad, DATforDCEMRI, DCL, deseasonalize, designmatch, Devore7, DMwR, DoseFinding, dualScale, eHOF, ELT, EMMIXskew, EngrExpt, equivalence, erboost, EstCRM, factorQR, fastclime, FAwR, FitAR, fit.models, flare, flexclust, flexmix, FTICRMS, gammSlice, gbm, gcbd, geoelectrics, Giza, growthrates, gsbDesign, hett, hgam, HH, Hmisc, hotspots, HSROC, huge, hyperSpec, ICEinfer, iClick, iCluster, IDPmisc, iGasso, insideRODE, irtProb, jagsUI, joineR, kmlShape, kwb.hantush, kzs, latticeExtra, loa, Maeswrap, mapStats, MCPMod, McSpatial, MDR, memisc, mirt, mixexp, mixOmics, mleur, MM2S, MOJOV, MortalitySmooth, mosaic, mritc, msme, nFactors, nlmeODE, odfWeave, OLScurve, optiscale, orderbook, overlapping, PairedData, paleoMAS, PASWR, PASWR2, pbo, pems.utils, pencopula, pendensity, penDvine, phenmod, phmm, picasso, PKgraph, PKreport, playwith, pmg, portfolio, portfolioSim, primer, PROFANCY, ProTrackR, pscl, qtlhot, R2MLwiN, R330, randomLCA, rasterVis, RcmdrPlugin.plotByGroup, RcmdrPlugin.temis, rCUR, REPPlab, rmatio, Rmisc, rms, robfilter, robust, RSA, RxCEcolInf, rysgran, SALTSampler, scaRabee, SEL, semPLS, SetMethods, sExtinct, simFrame, simPop, sme, smint, SML, soilprofile, solaR, spuRs, statnetWeb, stripless, survSNP, svdvisual, sybil, synthpop, TDboost, tdr, titan, TROM, twang, unmarked, vegan, VHDClassification, violinmplot, VizOR, vwr, waterfall, Watersheds, wgaim, wskm, xpose4
COMBIA, DCL, ELT, HH, pencopula, rasterVis, solaR, statnetWeb, twang, vwr, wskm
blavaan, bmem, coefficientalpha, EffectLiteR, eqs2lavaan, fSRM, influence.SEM, lavaan.survey, MIIVsem, profileR, psytabs, RAMpath, regsem, RMediation, RSA, rsem, semTools, simsem, stremo
BACprior, bestglm, BMA, DEMOVA, FitAR, Kpart, MAR1, pampe, R330, reams, speff2trial, TSA
ATmet, DiceOptim, mtk, netgen, penalizedSVM
BCE, EMMAgeo, LIM, MLCIRTwithin, MultiLCIRT, spaceExt
afex, agRee, aods3, ArfimaMLM, arm, bapred, Bayesthresh, BBRecapture, blme, BradleyTerry2, cAIC4, carcass, CLME, difR, fishmethods, fullfact, gamm4, GLMMRR, GWAF, iccbeta, influence.ME, JAGUAR, lmerTest, longpower, marked, MEMSS, merTools, Metatron, mixAK, MixRF, mlma, mlmRev, nonrandom, pbkrtest, pedigreemm, predictmeans, prLogistic, robustlmm, simr
AER, cjoint, dcv, erer, fpp, frontier, ivlewbel, ivpack, mfx, micEconAids, MRMR, rdd, systemfit, vars
abc, BBRecapture, curvetest, DATforDCEMRI, ELT, EMD, mcll, McSpatial, nlts, SimpleTable, TSA
cherry, clime, EDFIR, goalprog, ibd, imprProbEst, irr, kappalab, linprog, mcclust, modQR, mpcv, nonparaeff, pathClass, RcmdrPlugin.sampling, StatMatch, WhatIf
Benchmarking, boostSeq, DJL, GameTheory, qVarSel, safeBinaryRegression, sdcTable, TFDEA
MetFns, MRMR, orgR, RGoogleAnalytics, RGoogleAnalyticsPremium, seawaveQ, TimeProjection, tolBasis, weatherr
DMR, geometry, MM, sdcTarget, SNSequate, SODC, spBayes
efreadr, forestplot, gitlabr, imager, jug, packagetrackr
etasFLP, FeedbackTS, geo, M3, swfscMisc, ternvis, vmsbase
BPEC, cope, ETAS, FeedbackTS, fields, fossil, geo, GeoLight, HBSTM, letsR, M3, mapdata, mapproj, muRL, NightDay, OIdata, openair, OriGen, paleobioDB, phytools, ramps, RNCEP, s2dverification, speciesgeocodeR, ternvis, vmsbase, warbleR
cshapes, DeducerSpatial, Digiroo2, geospacom, GISTools, GWmodel, helsinki, itcSegment, KappaV, lakemorpho, mapStats, McSpatial, micromap, monographaR, Nippon, pycno, qrfactor, rCarto, shp2graph, STMedianPolish, StreamMetabolism, ternvis, UScensus2000cdp, UScensus2000tract, UScensus2010, vdmR, Watersheds
adaptMCMC, adaptsmoFMRI, addhaz, ADMMnet, agop, ahaz, arm, arules, BacArena, BayesFactor, bayesGDS, bc3net, BCE, BDgraph, bigdata, biglasso, BinNonNor, BinNor, bnstruct, BTLLasso, cAIC4, CAM, camel, cherry, CLSOCP, covLCA, CoxBoost, Coxnet, cpgen, cplm, crqa, crrp, CRTgeeDR, ctmcmove, CVST, cvxbiclustr, cvxclustr, DAGGER, dcGOR, dclone, dhglm, distrom, dmm, dosresmeta, DoubleCone, dualScale, EMCluster, EMMREML, epoc, excursions, expm, FAiR, fanc, fastclime, fastcox, fda, FENmlm, fExpressCertificates, FindIt, flare, frailtyHL, FSInteract, FTICRMS, GAMBoost, gamlr, gamm4, gcdnet, gdistance, geeM, genlasso, GenOrd, GeoDE, geostatsp, gettingtothebottom, glmm, glmnet, gptk, GPvam, GrassmannOptim, growthrate, grpreg, grpregOverlap, gskat, gvcm.cat, gwerAM, hglm, hglm.data, HiCfeat, highriskzone, HiPLARM, hts, huge, ibmdbR, inarmix, IPMpack, irlba, isotonic.pen, ivmodel, kinship2, klin, lassoscore, ldr, lfe, lme4, lmerTest, logcondiscr, longpower, LPmerge, LSC, lsgl, mapfit, Matrix.utils, mclogit, MCMCglmm, mdhglm, MDPtoolbox, mediation, MEET, mefa4, MESS, metafor, Metatron, mht, mi, MIIVsem, minque, MMS, msda, msgl, multiAssetOptions, MultiOrd, mvglmmRank, nadiv, netcoh, nonlinearTseries, OpenMx, optimbase, ORDER2PARENT, orderedLasso, OrdNor, PCovR, pedgene, pedigree, pedigreemm, penDvine, phmm, picasso, PivotalR, PoisBinNonNor, PoisBinOrd, PoisBinOrdNonNor, PoisBinOrdNor, PoisNonNor, PoisNor, PRISMA, ProbitSpatial, PROFANCY, qgtools, qlcMatrix, qpcR, QRM, quadrupen, qut, R2STATS, ramps, rCUR, RealVAMS, REBayes, recommenderlab, reglogit, RFGLS, RGENERATEPREC, rmatio, Rmosek, RMRAINGEN, RNewsflow, robustlmm, rsggm, SALES, sdwd, sensory, sglasso, sglOptim, sGPCA, skatMeta, smam, SML, softImpute, sommer, SOR, spacejam, sparseMVN, spatialprobit, SpatioTemporal, spdep, speedglm, sSDR, ssfa, StableEstim, svcm, sybil, sybilccFBA, sybilcycleFreeFlux, sybilEFBA, sybilSBML, systemfit, textir, textmineR, TimeProjection, tmvtnorm, TreePar, trustOptim, ViSiElse, wfe
Bayesthresh, BioPhysConnectoR, dualScale, HRM, hts, MRSP, pom, rrlda, semGOF, sommer, zoib
aSPU, DAMOCLES, FastHCS, FastPCS, FastRCS, GAD, localgauss, LS2Wstat, NSA, r2dRue, samr, ttScreening, visualFields
censReg, games, gmnl, hermite, ihs, IntLik, intReg, lmmot, mhurdle, mlogit, mlogitBMA, mvProbit, oglmx, pglm, PrevMap, Rchoice, sampleSelection, spfrontier, ssfa, truncreg
CAM, expectreg, FDboost, gamboostLSS, globalboosttest, InvariantCausalPrediction, parboost
Bclim, BiSEp, clustvarsel, CNprep, CNVassoc, GESTr, LifeTables, MetabolAnalyze, msir, msos, npde, prabclus, qclust, robustDA, Simpsons, SNPMClust, SQN, tclust, Traitspace, upclass, WACS
adaptsmoFMRI, anominate, bacr, BayesMed, bayespref, CoinMinD, cudia, gset, HSROC, hzar, miscF, NHMM, PhViD, R2GUESS, RxCEcolInf, SimpleTable, uskewFactors
bgeva, CAM, coenoflex, dlmap, dsm, DSsim, eHOF, fda.usc, gamlss.add, gamlss.spatial, gamm4, gammSlice, gvcm.cat, ibr, icaOcularCorrection, iRegression, ismev, itsadug, labdsv, logistf, MAPLES, modTempEff, mombf, MPINet, multipleNCC, nontarget, ordPens, R2BayesX, reams, robustgam, scam, season, SemiParBIVProbit, SemiParSampleSel, semsfa, STAR, trioGxE, TSA, TTS
accelmissing, BaM, CALIBERrfimpute, genpathmox, HardyWeinberg, hot.deck, logistf, miceadds, roughrf, stpm, SYNCSA, weights, weightTAPSPACK
AquaEnv, cellVolumeDist, HydroMe, micEconCES, mkin, onls, propagate, qpcR, Ritc, tumgr
lordif, mirtCAT, NominalLogisticBiplot, OrdinalLogisticBiplot, PerFit
brainR, grt, kml3d, ks, longitudinalData, mritc, ptinpoly, VecStatGraphs3D
DIFlasso, FRESA.CAD, intReg, IQCC, lmmlasso, maxLik, polywog
bayesMCClust, bayess, DiceOptim, FAMT, MaXact, mdsdt, PAGWAS, PLordprob, qtlhot, quantreg.nonpar, Rgbp, siar, StratSel, Sunder, timedelay, WACS
ATmet, BVS, CEoptim, eiPack, hysteresis, ltm, NEff, NHMM, RM2, score, spatial.gev.bma, Surrogate, trioGxE
bifactorial, BSagri, factorplot, HH, MAVTgsa, medflex, mutossGUI, nparcomp, RcmdrPlugin.coin, RcmdrPlugin.doex
adaptsmoFMRI, AdMit, asd, aSPU, AssocTests, AssotesteR, B2Z, BACprior, BAEssd, Bayesianbetareg, Bayesthresh, BAYSTAR, bdots, Bergm, bglm, bgmm, bifactorial, BinNonNor, BinNor, Bmix, bnormnlr, BNPTSclust, CAMAN, caper, CDM, condMVNorm, covmat, CPMCGLM, cslogistic, cudia, dawai, depend.truncation, distrEllipse, dmt, DoseFinding, DunnettTests, edrGraphicalTools, EMC, EMMIXskew, emulator, FactMixtAnalysis, FAmle, faoutlier, fExpressCertificates, fgof, ForImp, freqdom, freqparcoord, genetics, GenForImp, GenOrd, GGMridge, GGMselect, glmm, glmpathcr, GLSME, growthrate, gset, hbim, hdrcde, hglasso, highmean, HPbayes, hsmm, hyperSpec, ICS, ICSNP, IMIS, imputeYn, JPEN, kcirt, ks, lava.tobit, lawstat, LCAextend, lmec, lmenssp, LogConcDEAD, logcondiscr, LSMonteCarlo, mada, MAMS, mc2d, MCPMod, mdhglm, mediation, MetabolAnalyze, metamisc, MetSizeR, mgarchBEKK, mhsmm, miscF, miscFuncs, MitISEM, MIXFIM, mixsmsn, mmcm, MNS, Modalclust, mombf, MRsurv, msma, multcomp, multinomRob, MultiOrd, multxpert, muma, mutoss, mvnTest, mvProbit, mvSLOUCH, netgen, nicheROVER, nlsem, nparcomp, OptInterim, OrdNor, PairedData, parallelMCMCcombine, party, PAWL, PGEE, plgp, PoisBinNonNor, PoisBinOrd, PoisBinOrdNor, PoisNor, polycor, powerGWASinteraction, psbcGroup, qclust, QRM, R2GUESS, RAD, reglogit, RidgeFusion, rPowerSampleSize, RxCEcolInf, SamplerCompare, schwartz97, selectiongain, SeleMix, SemiParSampleSel, SEMModComp, simboot, snipEM, SNPassoc, SNPmaxsel, sp23design, spate, spatialnbda, spatialprobit, spatialTailDep, spfrontier, sscor, ssmrob, SSsimple, Stem, symmoments, tclust, texmex, tlmec, tmvtnorm, TTmoment, uskewFactors, WACS, wbsts, weightedScores, yuima
biglasso, ExactPath, glmvsd, mombf, pass, SIS
Bergm, Blaunet, blkergm, CCMnet, enaR, ergm, ergm.count, ergm.ego, ergm.graphlets, ergm.rank, ergm.userterms, haplotypes, hergm, latentnet, lvm4net, mpa, ndtv, networkDynamic, networkDynamicData, networksis, OutbreakTools, statnetWeb, tergm, tsna, VBLPCM, xergm.common
EpiModel, ndtv, networkDynamicData, tergm, tsna
acc, alphaOutlier, drgee, GNE, likelihoodAsy, sigloc, SPmlficmcm
abd, AdaptFit, AdaptFitOS, assist, bdots, BiDimRegression, BIOdry, cati, cccrm, CorrMixed, covBM, CpGassoc, dlmap, DPpackage, far, FCGR, FlexParamCurve, frailtypack, gamlss, goric, HydroMe, insideRODE, ipdmeta, IPMpack, JM, JMbayes, joineR, JointRegBC, JoSAE, likelihood, lmenssp, lmeSplines, lmfor, longpower, LoopAnalyst, LVMMCOR, mbest, meboot, MethComp, mgcv, MSwM, multilevel, mvctm, nlmeODE, orQA, pheno, picante, plmm, portfolio, prc, predictmeans, ProfileLikelihood, psychometric, qrLMM, ramps, REEMtree, RepeatedHighDim, sae, sitar, spatstat, SPREDA, TapeR
CCpop, corHMM, episplineDensity, MaxPro, OUwie, parma, stpm
abc, BaM, CBPS, depmixS4, epiDisplay, factorplot, gamlss.add, gamlss.mx, HIest, HydeNet, ImpactIV, introgress, LOGICOIL, MDM, partialOR, pocrm, roughrf, sodavis, synthpop
CovSel, DepthProc, rddtools, semsfa, stam
alabama, B2Z, bayesDccGarch, bnormnlr, catIrt, CBPS, CompLognormal, compound.Cox, copCAR, dhglm, DOBAD, FENmlm, fgof, fracprolif, frailtyHL, ghyp, HPbayes, lbfgsb3, lmeNB, ltbayes, mdhglm, mederrRank, mgpd, mipfp, mvglmmRank, mvSLOUCH, optextras, PSM, QRM, RCPmod, SemiMarkov, sgt, SpeciesMix, ssym, stremo, ThresholdROC, turboEM
brainR, COMBIA, cudaBayesreg, dcemriS4, dpmixsim, fslr, mritc
ddst, gaussquad, GPC, LaplaceDeconv, LPTime, uniftest
AtelieR, frmqa, hpcwld, iteRates, MM, NSM3, rTableICC
evtree, NHEMOtree, psychotree, quint, smbinning, vcrpart
ccaPP, DetMCD, muma, rainbow, rrlda, sscor
DIFlasso, DIFtree, lmmlasso, multiPIM, ROC632, subtype, uplift
indicspecies, rich, Storm, Traitspace, vegan
astro, audiolyzR, cytoDiv, DIFtree, dupiR, EasyStrata, epade, GeneticTools, lba, magicaxis, MetFns, mutossGUI, optpart, plotmo, randomizeR, SeqFeatR, simplexreg, surv2sampleComp
autopls, BioMark, ChemometricsWithR, dbstats, dmm, LGEWIS, lspls, MetStaT, monomvn, muma, obliqueRF, RcmdrPlugin.NMBU, robCompositions, RVtests, svapls
abctools, acc, acs, bcpa, bmk, boottol, BSGS, ClustGeo, CPMCGLM, cshapes, DataLoader, EBMAforecast, EIAdata, EurosarcBayes, evolqg, Fgmutils, fishmove, gcbd, gpmap, imager, ivlewbel, JAGUAR, merTools, MRMR, MScombine, NAPPA, ONETr, plotSEMM, PMA, psytabs, pxR, rcbalance, rcbsubset, RDSTK, remix, reshapeGUI, Rmisc, RSAGA, RStorm, sclero, selfea, smatr, SSrat, statcheck, timeordered, unitedR, weightTAPSPACK, wordmatch
adhoc, embryogrowth, gaussquad, kzft, LaplaceDeconv, orthopolynom, rationalfun
colorscience, conicfit, crqa, episplineDensity, GORCure, ICGOR, likelihoodAsy, mousetrack, RAHRS, TapeR, TDD, VideoComparison
DistatisR, ExPosition, InPosition, MExPosition, TExPosition, TInPosition
argparse, AtelieR, benchmark, ggfortify, gsubfn, MetaQC, nls2, PKgraph, pmg, R2STATS, SparseFactorAnalysis, sqldf, traitr
cba, ConsRank, diverse, dtw, dtwclust, kst, recommenderlab, rEMM, rrecsys, smdc, StatMatch, stream, TSdist
accelmissing, anominate, BSGS, emIRT, lctools, oc, wnominate
BinNor, Compind, DeducerPlugInScaling, GAabbreviate, HDMD, multicon, MultiOrd, nFactors, nonparaeff, orddom, PoisBinOrdNor, psytabs, random.polychor.pa, Rz, Scale, SODC, SSDforR, SubLasso
ASMap, dlmap, eqtl, mpMap, mQTL, pheno2geno, qtlbook, qtlhot, qtlnet, vqtl, wgaim, xoi
AdapEnetClass, BLCOP, BSquare, cosso, DAGGER, ForecastCombinations, FRAPO, gtop, imputeYn, iterLap, kappalab, kinship2, ldlasso, MonoPoly, pencopula, RefFreeEWAS, SEL, ShapeChange, SPIn, ternvis, vottrans, wSVM
abc, alphaOutlier, BSquare, cqrReg, EILA, emplik, ForecastCombinations, genpathmox, GeoXp, lss, McSpatial, mvctm, OutlierDC, pheno, plaqr, qrjoint, quantregGrowth, quantreg.nonpar, Rearrangement, Rfit, riv, RobPer, rqPen, turboEM, vdg
Agreement, FFD, HTMLUtils, permPATH, psytabs, RcmdrPlugin.EACSPIR, STAR
DSpat, Geneland, GeoGenetix, LS2Wstat, ProbForecastGOP, UncerIn2
AUCRF, bartMachine, BigTSP, D2C, interpretR, MAVTgsa, missForest, MixRF, mlDNA, ModelMap, partitionMap, quantregForest, RFgroove, rfPermute, rfUtilities, roughrf, spikeslab, sprint, trimTrees, varSelRF
celestial, McSpatial, RapidPolygonLookup, RWBP, StatMatch
biomod2, cffdrs, cmsaf, ctmcmove, diffeR, dismo, downscale, ENiRG, gdistance, gdm, geostatsp, geotopbricks, gfcanalysis, gimms, hsdar, itcSegment, kissmig, letsR, lulcc, mapmisc, maxlike, meteoForecast, MigClim, ModelMap, modiscloud, move, paleobioDB, phyloclim, PopGenReport, PrevMap, rangeBuilder, rasterVis, remote, rts, sampSurf, satellite, ShapeSelectForest, SpatialPosition, spatial.tools, spdynmod, TOC, usdm, virtualspecies, water, zoon
EnQuireR, RcmdrPlugin.BCA, RcmdrPlugin.coin, RcmdrPlugin.depthTools, RcmdrPlugin.doex, RcmdrPlugin.EBM, RcmdrPlugin.EcoVirtual, RcmdrPlugin.epack, RcmdrPlugin.Export, RcmdrPlugin.KMggplot2, RcmdrPlugin.mosaic, RcmdrPlugin.MPAStats, RcmdrPlugin.plotByGroup, RcmdrPlugin.pointG, RcmdrPlugin.ROC, RcmdrPlugin.seeg, RcmdrPlugin.SM, RcmdrPlugin.steepness, RcmdrPlugin.UCA
ASMap, bayespref, beadarrayFilter, ChaosGame, corkscrew, DeducerText, ENmisc, FieldSim, GISTools, GOplot, introgress, latticeExtra, LeLogicielR, linkcomm, LSC, MDplot, MDSGUI, micromap, MonoPhy, mvtsplot, phenmod, profileR, PST, qdap, qPCR.CT, RArcInfo, rCarto, RcmdrPlugin.pointG, RcmdrPlugin.SM, RFLPtools, TrackReconstruction, TraMineRextras, TRSbook, wordcloud
AdaptiveSparsity, Amelia, ASPBay, BaBooN, bcpa, bifactorial, Biocomb, blockmodels, CARBayes, CARBayesST, clogitL1, ClusterStability, ClustMMDD, collUtils, ConConPiWiFun, copCAR, CoxPlus, cqrReg, dbmss, dendextendRcpp, DepthProc, dils, drgee, dslice, ecp, EditImputeCont, emIRT, EPGLM, fastGHQuad, FBFsearch, FCNN4R, FDGcopulas, FRESA.CAD, FSInteract, fugeR, gaston, GeneticTools, GENLIB, glmgraph, Gmisc, gMWT, growcurves, growfunctions, GSE, GUTS, hkevp, HUM, hypervolume, IBHM, IsingSampler, JAGUAR, jmotif, kergp, lm.br, matchingR, mice, miscF, MixedDataImpute, Mposterior, MRIaggr, multicool, MVB, mvcluster, NetSim, ngspatial, nonlinearTseries, NPBayesImpute, oem, OneArmPhaseTwoStudy, OpenMx, orQA, PACVB, PedCNV, PerMallows, PoweR, ProbitSpatial, ProNet, propagate, quadrupen, Rborist, Rclusterpp, rcppbugs, RcppClassicExamples, RcppOctave, RcppXts, regsem, remote, rexpokit, Rmalschains, Rmixmod, RmixmodCombi, robustgam, rotations, RoughSets, RSNNS, RSofia, Rsomoclu, rstanarm, rtkore, rtkpp, RVowpalWabbit, satellite, sdcTable, seismicRoll, sequences, simFrame, snipEM, SOD, spacodiR, steadyICA, StMoSim, survSNP, tagcloud, tbart, treeclim, trustOptim, unmarked, VideoComparison, waffect, wingui, wsrf
FBFsearch, FisHiCal, miscF, MVB, PedCNV, prospectr, robustgam
anametrix, aqr, brewdata, CHCN, couchDB, crn, factualR, fds, helsinki, jSonarR, LightningR, notifyR, OIdata, ONETr, osmar, psidR, pullword, pumilioR, R4CouchDB, rbiouml, rbitcoinchartsapi, RDSTK, restimizeapi, rHpcc, Rjpstatdb, Rlabkey, rLTP, RNaviCell, rneos, ROMIplot, ropensecretsapi, rPlant, RSelenium, RStars, Rtts, RYoudaoTranslate, scrapeR, shopifyr, sos4R, sotkanet, source.gist, SPARQL, streamR, support.CEs, SynergizeR, tibbrConnector, tumblR, VarfromPDB, VideoComparison, zendeskR
biomod2, emme2, gcbd, Giza, lctools, PAWL, pedigree, PhaseType, profileR, rapportools, RcmdrPlugin.EACSPIR, reportRx, RSAP, SMFI5, unmarked, wux
afex, CINOEDV, ClimClass, diverse, ESGtoolkit, gapmap, ifaTools, JAGUAR, mmppr, MRMR, pxR, reshapeGUI, STMedianPolish, tcR, tmpm, TriMatch, validateRS, wordmatch
cffdrs, DeducerSpatial, diffeR, divagis, hsdar, landsat, M3, mgraph, micromap, ModelMap, modiscloud, move, prevR, r2dRue, rangeBuilder, ShapeSelectForest, spatial.tools, SPODT, TOC, UScancer, water
anchors, DiceOptim, FAiR, KrigInv, multinomRob, RobPer
DivE, expp, geospacom, GISTools, Grid2Polygons, highriskzone, ibeemd, itcSegment, KappaV, pycno, Watersheds
abcdeFBA, alphashape3d, animalTrack, bios2mds, BiplotGUI, bpca, brainR, ChaosGame, ConsRank, corregp, depth, DiceView, directPA, DirichletReg, dti, edrGraphicalTools, eegkit, etasFLP, fdaPDE, FieldSim, foodweb, frontiles, fso, gdimap, geoelectrics, geomorph, GeoXp, GGEBiplotGUI, grt, hgam, hiPOD, hypervolume, kml3d, ks, longitudinalData, LSAfun, Maeswrap, MDSGUI, molaR, MSQC, mtk, mvmesh, nat, nat.nblast, nat.templatebrains, NeatMap, nonlinearTseries, optBiomarker, pavo, plot3Drgl, qpcR, qtlc, QuantifQuantile, R330, RadOnc, RcmdrPlugin.TeachingDemos, Rknots, ROCS, rotations, Rpdb, sphereplot, tkrgl, VDA, VecStatGraphs3D, YplantQMC
abcdeFBA, cosso, DAGGER, designmatch, FRAPO, LPmerge, rorutadis, sdcTable, sparkTable
brainGraph, CITAN, fit4NM, GFD, gWidgets2RGtk2, gWidgetsRGtk2, HomoPolymer, MenuCollection, meta4diag, PKgraph, RGtk2Extras, tourrGui
auRoc, BANOVA, BaySIC, HydeNet, lira, metamisc, pcnetmeta, prevalence, PurBayes, R2jags, simmr, zoib
arulesNBMiner, bartMachine, bartMachineJARs, CollapsABEL, collUtils, Crossover, edeR, ENMeval, extraTrees, gemtc.jar, glmulti, gMCP, helloJavaWorld, InSilicoVA, iplots, JGR, KoNLP, mallet, MSIseq, mwa, rCBA, rcdklibs, rChoiceDialogs, rDNA, REPPlab, rGroovy, RH2, RImpala, RJDBC, rJPSGCS, RJSDMX, rJython, rkafka, rkafkajars, rmcfs, RMOA, RMongo, RNCBIEUtilsLibs, RNetLogo, ror, rrepast, rsubgroup, SBRect, scagnostics, sjdbc, spcosa, streamMOA, venneuler, x.ent, xlsx, xlsxjars
couchDB, df2json, edeR, instaR, notifyR, RDSTK, Rfacebook, rJython, Rlabkey, rPlant, RYoudaoTranslate, source.gist, Storm, streamR, tibbrConnector, zendeskR
audiolyzR, factualR, LightningR, pxR, R4CouchDB, rbiouml, rbitcoinchartsapi, restimizeapi, RNaviCell, ropensecretsapi, rPython, RSelenium, RStars, RXKCD, SynergizeR, tumblR, VideoComparison, WDI, weatherr
AMOEBA, CNprep, MicSim, pbdMPI, pbdSLAP, snowFT, sprint
ACTCD, CellularAutomaton, curvetest, DATforDCEMRI, GAD, NSA, R.oo
Bessel, CryptRndTest, frmqa, LDOD, LIHNPSD, pvrank
contrast, CPE, FeaLect, LCAextend, lordif, missDeaths, nonparaeff, Tsphere
BMA, ccaPP, compositions, cvTools, ddalpha, DetMCD, dmm, FastHCS, ForwardSearch, GWmodel, ltsbase, MBmca, muma, perry, qpcR, robCompositions, robfilter, RobPer, robust, RobustAFT, robustgam, robustHD, robustX, rrcov, rrcovHD, rrcovNA, sscor, ssmrob
Comp2ROC, cvAUC, genMOSS, iFad, MEET, obliqueRF, pathClass, PredictABEL, RcmdrPlugin.ROC, rocc, sperrorest, subtype
ibmdbR, ImportExport, mixsep, RODBCext, RODM, stacomirtools, toaster
CellularAutomaton, curvetest, DATforDCEMRI, NPCD, NSA, plmDE, R.filesets, R.utils
AdvBinomApps, diffdepprop, diffEq, ecolMod, eel, errint, FME, hsdar, kmc, LLSR, mkin, pbatR, ProbYX, prop.comb.RR, ReacTran, weightedScores
biotools, erpR, gamlss.demo, GUIDE, LinRegInteractive, MDSGUI, optBiomarker, RVideoPoker, soilphysics, vows
ada, adabag, chemometrics, DStree, fda.usc, gamlss.add, GPLTR, maboost, maptree, multiPIM, NHEMOtree, PSAgraphics, quint, REEMtree, rpart.plot, rpartScore, rpart.utils, sperrorest, stima, treeClust
biwt, BMA, DepthProc, FAiR, FRB, groc, muma, riv, RobAStBase, robust, robustfa, rrcovHD, rrcovNA
alphaOutlier, depmixS4, DiscreteInverseWeibull, DiscreteLaplace, DiscreteWeibull, DNAtools, Familias, GEVStableGarch, GsymPoint, IDPSurvival, JOP, LDOD, likelihoodAsy, mipfp, qualityTools, robustDA, SemiMarkov
CITAN, filehashSQLite, gcbd, MUCflights, RecordLinkage, refGenome, RQDA, snplist, sqldf, SSN
brms, CopulaDTA, hBayesDM, MIXFIM, varian
discrimARTs, DistributionUtils, FKF, futile.paradigm, GeneralizedHyperbolic, permGPU, rkafka, schwartz97, SkewHyperbolic, SoilR, VarianceGamma
acnr, aroma.affymetrix, aroma.cn, aroma.core, calmate, ENiRG, HyPhy, MSIseq, NSA, PubBias, tmle.npvi
AER, CADFtest, cjoint, COUNT, gmm, inference, ivpack, list, mediation, mfx, midasr, RcmdrMisc, rdd, strucchange, vars
ACSNMineR, bios2mds, DeducerSpatial, dslice, geneNetBP, precintcon, RSDA, TriMatch
bpca, CHsharp, GPCSIV, ISDA.R, lle, MDSGUI, poLCA, windex
bmem, dpa, faoutlier, qtlnet, semdiag, semGOF
CryptRndTest, distr, ICEbox, modiscloud, plfm, polycor, simrel, TTS
diagram, ecolMod, EMMAgeo, marelac, pathdiagram, ReacTran, sparsenet, spnet, symbols
adehabitat, aspace, BayesX, DSsim, fossil, RPyGeo, RSAGA
bde, CLME, edgar, EMMAgeo, enviPick, EurosarcBayes, Factoshiny, ifaTools, mirtCAT, phenology, plotSEMM, quipu, RJafroc, sglr, shinystan, Sofi, sparkTable, statnetWeb
biogram, cherry, designmatch, maptpx, qlcMatrix, RcmdrPlugin.temis, Rcplex, Rglpk
fpca, irtoys, magicaxis, mem, plmm, vioplot
cSFM, enveomics.R, GenForImp, LIHNPSD, Rgbp, tclust
bipartite, CCMnet, CEoptim, egonet, enaR, hergm, ndtv, NetCluster, Rambo, relevent, SSrat, statnet
BioPhysConnectoR, CePa, doSNOW, snowfall, snowFT
AMOEBA, bmem, classyfire, DLMtool, fugeR, GlobalDeviance, graphscan, hsphase, kcirt, lle, megaptera, mglmn, MicSim, mlDNA, peperr, PIGE, R2GUESS, reddPrec, RMark, rsgcc, widals
adehabitat, adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, automap, biomod2, CAMAN, cartography, cmsaf, colorscience, constrainedKriging, cshapes, DeducerSpatial, diseasemapping, dismo, divagis, DivE, ecospat, ENiRG, excursions, expp, FedData, FeedbackTS, fossil, frontiles, georob, geospacom, geosphere, geospt, geosptdb, geostatsp, GISTools, graticule, Grid2Polygons, GWmodel, ibeemd, INLABMA, intamap, itcSegment, KappaV, landsat, MapGAM, mapmisc, maptools, MBA, meteoForecast, micromap, modiscloud, move, moveHMM, MUCflights, Nippon, orsifronts, plotGoogleMaps, polyCub, prevR, pycno, r2dRue, RandomFields, rangeBuilder, RapidPolygonLookup, raster, rcanvec, rgdal, rgrass7, rtop, rts, rworldmap, rworldxtra, sampSurf, sdm, secrlinear, seg, sos4R, SpatialEpi, spdep, spdynmod, spgrass6, spgwr, splancs, spnet, SPODT, spsurvey, spTDyn, ssfa, SSN, stam, STMedianPolish, stplanr, surveillance, tbart, trip, UncerIn2, UScensus2000cdp, UScensus2000tract, UScensus2010, usdm, vec2dtransf, vegclust, vetools, water, Watersheds, wux
copCAR, excursions, fields, gamlss.spatial, GPFDA, latticeDensity, LatticeKrig, mvMORPH, smnet, spThin
evmix, hts, maxent, McSpatial, modelfree, pheno, quantreg, rexpokit, rms, RTextTools
adaptsmoFMRI, aoristic, BAT, dbmss, Digiroo2, dixon, DSpat, ecespa, GriegSmith, latticeDensity, ppmlasso, RcmdrPlugin.seeg, sclero, seeg, selectspm, SGCS, siar, siplab, sparr, spatialsegregation, SpatialVx, stpp
AMOEBA, DCluster, Digiroo2, expp, GeoXp, ibeemd, latticeDensity, LS2Wstat, spatialprobit, splm, ssfa
aspace, dixon, DSsim, ecespa, latticeDensity, PVR, soilprofile, stpp, stppResid, Watersheds
Fgmutils, GPCSIV, RSDA, smbinning, vmsbase
asht, exact2x2, exactci, nivm, rPowerSampleSize
cond, CopulaREMADA, csampling, dglm, diffIRT, GHQp, h2o, joineR, lmeNB, marg, mcll, mixcat, MVR, nlreg, PCS, penalizedSVM, survsim
blkergm, ergm, ergm.count, ergm.graphlets, ergm.rank, ergm.userterms, latentnet, tergm
acs, AnDE, enaR, eqs2lavaan, exsic, Fgmutils, FRESA.CAD, fslr, geotopbricks, imager, KoNLP, lettercase, LindenmayeR, Maeswrap, mpoly, mtk, neuroim, orgR, patchSynctex, PepPrep, PhysActBedRest, pxR, quipu, recoder, RGENERATEPREC, RJafroc, rsgcc, RSMET, sdcTable, sqlutils, ssh.utils, TextoMineR, tumblR, vardpoor, VarfromPDB, ViSiElse
cjoint, lavaan.survey, mapStats, MOJOV, odfWeave.survey, pedgene, relaimpo, samplingbook, sptm, ssfit, StatMatch, svyPVpack, twang, VIMGUI, weightTAPSPACK
AER, AF, ahaz, AHR, AIM, anoint, attribrisk, BaM, BayesMixSurv, bayesSurv, BivarP, BMA, BSGW, bshazard, carcass, cchs, cmprsk, CNVassoc, coin, compound.Cox, concreg, cond, CoxBoost, coxinterval, coxme, coxphw, CoxRidge, coxrobust, CPE, crossmatch, crrp, crrSC, csampling, currentSurvival, distcomp, DPpackage, drgee, dynpred, dynsurv, eha, ELYP, epiDisplay, epiR, etm, FamEvent, flexPM, flexsurv, frailtyHL, frailtypack, frailtySurv, gamlss.cens, gamlss.nl, gbm, gcerisk, geneSignatureFinder, glmpath, globalboosttest, glrt, GORCure, greyzoneSurv, GSAgm, gte, gtx, HapEstXXR, haplo.ccs, Hmisc, ICBayes, icenReg, ICGOR, IDPSurvival, imputeYn, InferenceSMR, intcox, interval, invGauss, ipflasso, isoph, JM, JMbayes, joineR, JointRegBC, kaps, kin.cohort, km.ci, kmconfband, kmi, lava.tobit, lcmm, linERR, LncMod, LogicReg, luca, marg, MetaDE, mfp, missDeaths, mmc, MMMS, MPLikelihoodWB, MRH, mRMRe, MRsurv, mstate, multcomp, multipleNCC, NADA, NestedCohort, nlreg, NPHMC, NSM3, OIsurv, optmatch, OrdFacReg, OTRselect, OutlierDC, p3state.msm, packHV, paf, pamr, parfm, partDSA, pbatR, pch, penalized, PenCoxFrail, peperr, permGPU, PHeval, phmm, PIGE, plRasch, PRIMsrc, prognosticROC, PwrGSD, QoLR, qrcm, QualInt, RcmdrPlugin.coin, RcmdrPlugin.survival, relsurv, remix, risksetROC, rms, RobustAFT, ROC632, ROCt, RPCLR, rsig, rstpm2, season, seawaveQ, SemiCompRisks, seqDesign, seqMeta, SIMMS, simMSM, SIS, skatMeta, smcure, smoothHR, smoothSurv, SNPassoc, sp23design, speff2trial, SPREDA, sprinter, sptm, ssym, STAND, STAR, stepp, stpm, superpc, surv2sampleComp, survAccuracyMeasures, survAUC, survC1, survexp.fr, Survgini, survIDINRI, survivalMPL, survJamda, survMisc, SurvRank, SurvRegCensCov, survRM2, survSNP, tdROC, TH.data, threg, thregI, timereg, tnet, TraMineRextras, TransModel, uniah, uniCox
BacArena, GlobalFit, RSeed, sybilccFBA, sybilcycleFreeFlux, sybilDynFBA, sybilEFBA, sybilSBML
AnthropMMD, BiplotGUI, forensim, MDSGUI, mixsep, SeqFeatR, SRRS, stosim
humanFormat, kergp, markmyassignment, MInt, SortableHTMLTables, StableEstim
fArma, fAsianOptions, fAssets, fBasics, fBonds, fCopulae, fExoticOptions, fExtremes, fGarch, fImport, fMultivar, fNonlinear, fOptions, forecast, fPortfolio, fractalrock, fRegression, fTrading, fUnitRoots, TimeProjection, timeSeries
caschrono, fArma, fAsianOptions, fAssets, fBasics, fBonds, fCopulae, fExoticOptions, fExtremes, fGarch, fImport, fMultivar, fNonlinear, fOptions, fPortfolio, FRAPO, fRegression, fTrading, fUnitRoots, QRM
adehabitat, biotools, BiplotGUI, ConvergenceConcepts, FFD, fisheyeR, fit4NM, forensim, GGEBiplotGUI, GUIDE, MDSGUI, OligoSpecificitySystem, onemap, RHRV, RSA, RVideoPoker, soilphysics, SyNet, VIMGUI
DeducerText, manifestoR, maxent, RcmdrPlugin.temis, RNewsflow, smdc, TextoMineR, tm.plugin.dc
eiCompare, fExpressCertificates, imputeLCMD, propagate, spatialprobit, spfrontier, uskewFactors, WACS
FamEvent, GsymPoint, spate, validateRS, zCompositions
aster, cepp, dMod, glmm, iWeigReg, mcemGLM, MInt, relevent, UWHAM
TScompare, TSfame, TSmisc, TSMySQL, TSodbc, TSPostgreSQL, TSsdmx, TSSQLite
acp, AnalyzeTS, CADFtest, earlywarnings, fma, fpp, Mcomp, mgarchBEKK, nonlinearTseries, RcmdrPlugin.epack, RcmdrPlugin.UCA, TSA
AnalyzeTS, egcm, quantmod, smoother, SSDforR
dualScale, ENmisc, RcmdrPlugin.mosaic, RcmdrPlugin.SM, simPop, vcdExtra
analogue, BAT, betaper, BiodiversityR, bipartite, blender, cocorresp, CommunityCorrelogram, dave, FD, flowDiv, FreeSortR, GUniFrac, iDynoR, isopam, MiSPU, mpmcorrelogram, ordiBreadth, palaeoSig, paleoMAS, picante, RAM, rareNMtests, recluster, rich, simba, SYNCSA, vegan3d, vegclust
Bayesthresh, BSquare, EffectStars, errint, EurosarcBayes, GEVcdn, iteRates, lawstat, multgee, ordBTL, pheno2geno, prob
adwave, brainwaver, RHRV, W2CWM2C, wavemulcor, wmlf
binhf, costat, CVThresh, haarfisz, locits, LS2W, refund.wave, treethresh, waveband
dvfBm, eegAnalysis, RFgroove, TSclust, wbsts
cosmosR, DataLoader, ELT, ImportExport, RJafroc
acs, aidar, anametrix, apsimr, biorxivr, brewdata, compareODM, easyPubMed, EcoHydRology, EcoTroph, EIAdata, ESEA, gnumeric, grImport, iDynoR, ips, mseapca, mtk, MUCflights, odfWeave, ONETr, osmar, pmml, pumilioR, RDota, rFDSN, RFinanceYJ, rgexf, rgrass7, rHpcc, Rjpstatdb, Rlinkedin, rneos, RSDA, RSelenium, RWeather, RXMCDA, scrapeR, sos4R, SPARQL, spgrass6, StatDataML, SubpathwayGMir, support.CEs, symbolicDA, VarfromPDB, weatherr, WikipediaR, XML2R
A3, acnr, AmpliconDuo, bayesMCClust, compareGroups, DATforDCEMRI, etable, FactoClass, fifer, gsDesign, IndependenceTests, klausuR, LeLogicielR, likert, LinRegInteractive, MAMA, multilevelPSA, pamctdp, papeR, permPATH, PIGE, quipu, RcmdrPlugin.Export, RcmdrPlugin.NMBU, reporttools, rplotengine, rtable, sdcMicro, SeleMix, seqDesign, stacomirtools, surveillance, survSNP, TableMonster, TRSbook, twang
aqr, bdrift, bsts, cotrend, egcm, EIAdata, eventstudies, FinancialInstrument, highfrequency, hydroTSM, IBrokers, lfstat, PerformanceAnalytics, PortfolioAnalytics, Quandl, quantmod, RcmdrPlugin.epack, RcppXts, RFinanceYJ, rts, YieldCurve
acc, AER, AutoSEARCH, bdrift, betategarch, bsts, changepoint, dendrometeR, dtwSat, dyn, dynlm, egcm, EIAdata, EloRating, Evapotranspiration, eventstudies, fast, FinancialInstrument, FinTS, FLIM, forecast, fts, fxregime, gamlss.util, geotopbricks, gets, ggseas, glogis, highfrequency, hydroGOF, hydroTSM, IBrokers, lgarch, lmtest, mar1s, meteoForecast, Modalclust, phenology, PortfolioAnalytics, QoLR, quantmod, RcmdrPlugin.temis, rdatamarket, reGenotyper, RelValAnalysis, RJSDMX, RObsDat, rts, sde, solaR, STMedianPolish, StreamMetabolism, strucchange, SWMPr, tgram, trackeR, VideoComparison, xts, yuima
alleHap, arm, BayesComm, bayesPop, biomod2, bootnet, brainGraph, brms, CFC, Directional, DMwR, gdimap, geostatsp, glmmBUGS, Gmisc, HH, latentnet, magclass, merTools, ncdf4.helpers, ncdf.tools, neuroim, OpenRepGrid, oro.nifti, pcalg, pssm, quantspec, R2jags, Rcmdr, RcmdrMisc, RCMIP5, rfPermute, RItools, RNCEP, rosm, RSDA, s2dverification, secr, secrdesign, SparseTSCGM, spatial.tools, spatstat, spectral.methods, synbreed, treeclim
BTSPAS, ChainLadder, eggCounts, mbbefd, ReliabilityTheory
adegraphics, ads, brainGraph, clusterSim, entropart, hierfstat, IntClust, Laterality, memgene, msap, PBD, pez, phylobase, PopGenReport, poppr, RAM, rmetasim, RVAideMemoire, STEPCAM, symbolicDA, virtualspecies
adephylo, AFLPsim, apex, hierfstat, outbreaker, rmetasim, StAMPP, treescape
agricolae, conjoint, DoE.wrapper, SPOT, VdgRsm
anim.plots, gfcanalysis, mptools, phytools, spdynmod, srd, stream, TED
AutoModel, DTR, ExomeDepth, LogisticDx, mmeta, reportRx, xmeta
adegenet, adephylo, bcRep, betapart, BMhyd, BoSSA, brranching, CommT, entropart, EpiModel, evobiR, evolqg, expands, gamclass, gquad, GrammR, graphscan, gromovlab, HMPTrees, homals, kdetrees, lefse, markophylo, megaptera, Momocs, monogeneaGM, msap, nLTT, nodiv, outbreaker, OutbreakTools, P2C2M, PBD, PCPS, phyext2, phylobase, phylocurve, phyloland, PhyloMeasures, phylosignal, phyndr, PhySortR, PIGShift, poppr, primerTree, RAM, Reol, rotl, RPANDA, sharpshootR, sidier, SigTree, STEPCAM, strataG, stylo, taxize, TKF, TotalCopheneticIndex, vcfR
blmeco, carcass, CosmoPhotoz, eeptools, hbsae, mi, migui, mlVAR, rr
assertive, assertive.code, assertive.data, assertive.data.uk, assertive.data.us, assertive.datetimes, assertive.files, assertive.matrices, assertive.models, assertive.numbers, assertive.properties, assertive.reflection, assertive.sets, assertive.strings, assertive.types, pathological
assertive, assertive.data, assertive.data.uk, assertive.data.us, pathological
assertive, assertive.code, assertive.datetimes, assertive.strings, pathological
aemo, AntWeb, bigrquery, bnclassify, bold, boxr, broman, coala, codyn, condformat, dataonderivatives, dplyr, easypackages, ecoengine, FastKNN, ggthemes, ggvis, gistr, highcharter, jaatha, listWithDefaults, luzlogr, managelocalrepo, neuroim, nima, prcbench, precrec, prettyunits, rchess, RDML, rdrop2, remoter, reutils, rfisheries, rjstat, rotl, rpcdsearch, rprime, RSQLServer, simcausal, solr, spareserver, textreuse, tibble, tidyjson, tmlenet, wordbankr
AzureML, d3heatmap, emuR, FastRWeb, gitlabr, gmailr, jug, leaflet, MALDIquantForeign, manifestoR, MTurkR, plotly, R.devices, readMzXmlData, RSiteCatalyst, sendmailR, threejs, trelliscope, UNF
aftgee, antitrust, BinOrdNonNor, CatDyn, Compositional, DSBayes, LifeHist, mlt, optimx, orsk, reReg
BatchExperiments, fail, llama, metagen, parallelMap, ParamHelpers, RBPcurve, rsig, SwarmSVM, tspmeta, yakmoR
emdbook, Luminescence, metaplus, rstpm2, ss3sim
pcalg, plm, plsVarSel, sortinghat, sparsediscrim, splm
CollapsABEL, geneSLOPE, mbest, Rdsm, s2dverification
biogram, DNAprofiles, ETLUtils, ffbase, MSBVAR, Stack
caTools, geozoo, HierO, IgorR, nhlscrapr, oro.nifti, Pasha, rLiDAR, SocialMediaLab
adegenet, bandit, biotools, bootLR, brainGraph, BSagri, btergm, catenary, Causata, circular, complmrob, CorrBin, Countr, crs, dagitty, deming, DescTools, drsmooth, eggCounts, energy, extremogram, frair, GeneralOaxaca, gsg, ic.infer, Kendall, lga, MBESS, medflex, metaplus, mixtools, MplusAutomation, multiwayvcov, netdiffuseR, np, pairwiseCI, perspectev, pgirmess, phylosignal, plsRbeta, plsRglm, polyapost, poppr, pse, pubmed.mineR, Qtools, R2OpenBUGS, randomLCA, referenceIntervals, refund, RVAideMemoire, SCBmeanfd, sem, sensitivity, shotGroups, simmr, sisal, soilphysics, sparkTable, SpatialVx, spdep, sprint, TraMineR, treeclim, yhat
BatchJobs, diezeit, leafletR, mapview, opencpu, rdnb, Rook, roxygen2, tabplotd3
AutoModel, cdom, dotwhisker, eyetrackingR, forestmodel, merTools, pixiedust, tadaatoolbox, vdmR
MergeGUI, MissingDataGUI, plfMA, R2STATS, SeqGrapheR, vmsbase, x12GUI
afex, anacor, apaTables, apt, ART, ARTool, AutoModel, bayesLife, BCA, caret, Countr, drc, drsmooth, dynlm, easyanova, EffectLiteR, ez, FactoMineR, FSA, funcy, fxregime, gamclass, gcmr, medflex, miceadds, micEconCES, mixlm, mvdalab, NHPoisson, panelAR, plm, plsRglm, rasclass, RcmdrPlugin.BCA, referenceIntervals, rockchalk, rpubchem, RVAideMemoire, ryouready, sdcMicro, sjPlot, tadaatoolbox, translateSPSS2R, userfriendlyscience, VIM, VSE, zetadiv
aLFQ, caretEnsemble, datafsm, DecisionCurve, ESKNN, LOGIT, parboost, preprocomb, preproviz, RStoolbox, specmine, TLBC
AdaptGauss, bdynsys, climdex.pcic, diveMove, dtwclust, dynRB, envlpaster, funcy, gplots, growthcurver, NHMSAR, PharmacoGx, photobiology, rmarkdown, RSelenium, RTextTools, SchemaOnRead, sdPrior, sValues
AEDForecasting, FlowScreen, GeoLight, MPAgenomics, msltrend
BatchExperiments, BatchJobs, BBmisc, fail, hdm, icd9, lasvmR, lazysql, llama, mlr, parallelMap, ParamHelpers, RBPcurve, RcppShark, rscimark, SwarmSVM, tspmeta, yakmoR
activpalProcessing, bdvis, data.table, dga, Dominance, drLumi, ncdf.tools, qdap, qdapTools, redcapAPI, rugarch, SASxport, sqldf, TideCurves, TideTables, vmsbase, wakefield
activity, kineticF, monogeneaGM, monographaR, sharpshootR
Biocomb, chemometrics, classifly, classInt, clValid, DMwR, dprep, e1071, fpc, HistDAWass, ipred, lineup, mlearning, msSurv, RPEnsemble, Rsomoclu, stylo, supclust, wux
aoristic, cartography, FAOSTAT, GoodmanKruskal, mapStats, plotKML, questionr, rangeMapper, tmap
backShift, cds, DESnowball, JADE, lsbclust, movMF, pcalg, skmeans, stream
ADPclust, agricolae, Anthropometry, aqp, biplotbootGUI, clue, comato, convevol, CORElearn, CrossClustering, DESnowball, disclapmix, DisimForMixed, DrugClust, EMA, FactoMineR, fpc, funcy, geophys, GrammR, gromovlab, Hmisc, hybridHclust, inpdfr, IntClust, MixGHD, monogeneaGM, multibiplotGUI, openair, optCluster, PANDA, PReMiuM, PSF, rainbow, randomUniformForest, recluster, relations, rEMM, RPANDA, rrcov, rrcovNA, sdcMicro, semiArtificial, SemiPar, SensoMineR, seriation, sharpshootR, skmeans, spatialEco, spikeSlabGAM, StatDA, stream, symbolicDA, TcGSA, traj, TSdist, vegan, vmsbase
agRee, arm, auRoc, BaBooN, BANFF, BayesComm, bayescount, bayesGARCH, bayesLife, bayesmix, BayesSingleSub, bayesTFR, BayesX, Bchron, bdpopt, BDWreg, BEST, bfa, BPEC, brms, BRugs, btergm, btf, BTSPAS, CARBayes, CARBayesST, conting, dcmle, EasyMARK, eggCounts, eiwild, emdbook, EpiBayes, ergm, ergm.ego, evolqg, evolvability, geiger, geoBayes, GERGM, hierarchicalDS, HLSM, hSDM, IFP, immer, jagsUI, kobe, latentnet, list, lsmeans, marked, MfUSampler, mixAK, morse, MplusAutomation, MRH, MSBVAR, multimark, networkTomography, nLTT, pcnetmeta, plotMCMC, polySegratioMM, pomp, ptycho, PVAClone, qrjoint, R2admb, R2jags, R2OpenBUGS, r4ss, RcmdrPlugin.RMTCJags, redist, RMark, rr, runjags, SAVE, scape, SeqFeatR, simmr, sirt, sisus, slfm, sns, sparsereg, spBayesSurv, spdep, spikeSlabGAM, spTimer, sspse, stocc, TBSSurvival, tergm, tglm, Zelig, zic
AzureML, datadr, foreach, globals, lintr, markmyassignment, MonetDB.R, multcomp, pkgmaker, PopED, pryr, RStoolbox, svTools
afex, glycanr, matchMulti, nlnet, NPC, NSM3, pairwiseCI, party, shotGroups, sjmisc
anacor, arulesViz, BayesX, BiplotGUI, cds, circlize, copula, DepthProc, DiffusionRgqd, DiffusionRjgqd, effects, extracat, forecast, ftsa, gdimap, geiger, ggthemes, gpairs, HH, IsotopeR, JBTools, mapStats, mcmcplots, metafolio, msr, munsell, NMF, OpenRepGrid, plotKML, qgraph, rainbow, randomcoloR, RcmdrMisc, semPlot, seriation, SGP, shades, simPop, simsalapar, smacof, srd, subspace, TIMP, treemap, vcd, Wats
addreg, cem, CorrBin, DESnowball, DoE.base, isocir, klaR, label.switching, lllcrc, nettools, pcIRT, qualCI, Quor, ReliabilityTheory, rpcdsearch, sirt, TraMineRextras, treescape
gyriq, MDMR, nonnest2, RVPedigree, seqMeta, shotGroups, varComp
apt, cds, copulaedas, PortRisk, strataG, tailDepFun, VineCopula
BinOrdNonNor, BMhyd, bootnet, cape, cate, corHMM, D2C, esaBcv, jackstraw, list, lymphclon, MCMCglmm, mixOmics, netassoc, NORTARA, OUwie, parma, pcalg, perARMA, qgraph, r4ss, relaimpo, RPANDA, semPlot, sparsediscrim, spduration, tileHMM, wux
CorReg, dynRB, GoodmanKruskal, ModelMap, SafeQuant
ALTopt, calibrator, dbmss, downscale, ei, eiCompare, fMultivar, GB2, hyperdirichlet, kdecopula, MCMCglmm, np, planar, tailDepFun, tseriesEntropy, vines
abbyyR, AzureML, captr, clarifai, crunch, curlconverter, dataRetrieval, ecb, elastic, FedData, federalregister, geoknife, httr, installr, MTurkR, MTurkRGUI, OAIHarvester, random, rdian, readr, request, rgho, rio, Rmonkey, RPublica, rversions, telegram, V8, W3CMarkupValidator, wrswoR.benchmark
AFM, aLFQ, APSIM, bedr, benford.analysis, biomartr, brainGraph, caretEnsemble, Causata, ChannelAttributionApp, chromer, clickstream, DataCombine, datadr, DataExplorer, dataview, edmr, eeptools, eiCompare, emil, emuR, extracat, FactoMineR, FAOSTAT, fbRads, FedData, Fgmutils, freqweights, gems, genderizeR, gunsales, IAT, inbreedR, Information, Kmisc, lar, ldamatch, livechatR, lllcrc, LogisticDx, Luminescence, mapview, metaMix, mtconnectR, mvQuad, noncompliance, OptiQuantR, optiRum, PAC, partialAR, PGRdup, PopGenReport, pxweb, qdapTools, quanteda, RAM, rAmCharts, randomNames, rangeMapper, RAPIDR, RbioRXN, rdrop2, RecordLinkage, repmis, rerddap, retrosheet, rfisheries, rgbif, rio, rlist, RndTexExams, RNewsflow, rplexos, RxnSim, SafeQuant, SciencesPo, sdcTable, SetRank, SGP, shazam, simcausal, simPH, SocialMediaLab, solarius, SpaDES, spocc, statar, StatMeasures, stdReg, strvalidator, survMisc, SWMPr, taxize, tcR, text2vec, TideCurves, TideTables, tmlenet, traits, translateSPSS2R, treemap, trelliscope, TSTr, xgboost, yCrypticRNAs
archivist, BatchExperiments, BatchJobs, CITAN, dplyr, emuR, filehashSQLite, marmap, MonetDB.R, poplite, redcapAPI, refGenome, RObsDat, RODBCDBI, rplexos, RPresto, RQDA, SEERaBomb, sejmRP, smnet, snplist, sqldf, sqliter, timeseriesdb, TScompare, TSdbi, TSfame, TSmisc, TSMySQL, TSodbc, TSPostgreSQL, TSsdmx, TSsql, TSSQLite, twitteR, UPMASK, vmsbase
cccd, MFHD, phonR, rLiDAR, SEHmodel, spatstat, spdep, spsurvey
asbio, AssetPricing, bdynsys, bioinactivation, capm, CollocInfer, DAISIE, diversitree, dynatopmodel, EpiDynamics, flexsurv, geiger, gpDDE, HomoPolymer, httk, hypergeo, mkin, nLTT, PBD, pomp, RLumModel, RPANDA, spdynmod, stagePop, TIMP
bisectr, BrailleR, creditr, demi, easypackages, FedData, metacom, opencpu, pacman, wru
ahp, data.tree, gSEM, HydeNet, muir, SpaDES, umx
aqp, archivist, archivist.github, aws.signature, BatchJobs, boxr, caretEnsemble, Crossover, datadr, datapack, devtools, distcomp, downloader, dplR, dpmr, ezsim, fbRads, FeatureHashing, FSelector, fulltext, future, geiger, ggmap, ggplot2, harvestr, htmltools, httpcache, knitcitations, knitr, lintr, Luminescence, MALDIquantForeign, memoise, MonetDB.R, MTurkR, nat, nat.templatebrains, NMF, OpasnetUtils, optmatch, pander, pkgmaker, PKNCA, plotly, pomp, prettymapr, proton, qmethod, R2MLwiN, Rbitcoin, rbokeh, R.cache, RCMIP5, RcppOctave, readMzXmlData, repmis, repo, rerddap, Rexperigen, R.filesets, RLumShiny, RMixpanel, rngtools, ROAuth, rosm, roxygen2, rrepast, rsconnect, RSiteCatalyst, scatterD3, scidb, sharpshootR, shiny, shinyjs, simpleRCache, sisal, SpaDES, stashR, storr, swirl, testthat, text2vec, textreuse, trelliscope, UNF, vegalite
biomod2, ecospat, GSIF, plotKML, PopGenReport, sdm, SSDM, virtualspecies, zoon
distrDoc, logcondens.mode, meteR, miCoPTCM, RobLox, RobLoxBioC, ROptRegTS
MIPHENO, PKNCA, Rphylopars, SensMixed, synbreed
abcrf, ApacheLogProcessor, bcRep, bdots, BDWreg, bingat, breakpoint, BSGW, bst, cape, CFC, cffdrs, Compositional, covmat, Directional, DNMF, EasyMARK, EFDR, ENMeval, enpls, EnsembleBase, EpiModel, fdasrvf, fuzzyforest, GENLIB, gimme, gimms, grpss, GWLelast, GWRM, hbm, HMP, HMPTrees, hybridModels, iLaplace, Information, kergp, LANDD, LPR, Mediana, metricTester, mistral, MNS, Morpho, mpath, mplot, MXM, myTAI, NMF, opentraj, paleoTS, parallelML, parallelSVM, parboost, ParetoPosStable, penDvine, performanceEstimation, phylocurve, prozor, QuantumClone, randomUniformForest, regRSM, reval, RKEEL, RobustEM, robustrao, rplexos, RRreg, RStoolbox, semsfa, SGP, shazam, SHLR, simPop, spatial.tools, StAMPP, SurvRank, timeSeq, VSURF, WGCNA
abcrf, bdots, fuzzyforest, Mediana, RSNPset, SGP
biomartr, dataonderivatives, PharmacoGx, RKEELjars, stationaRy
ACDm, adegenet, ADPclust, aemo, alakazam, ARTool, assertr, AutoModel, backtestGraphics, bigrquery, binomen, bioinactivation, biomartr, bootnet, boxr, broom, cdcfluview, choroplethr, chromer, cofeatureR, CollapsABEL, cometExactTest, compareDF, condformat, cricketr, datacheckr, DataCombine, datadr, dataonderivatives, dataRetrieval, datastepr, ddpcr, denovolyzeR, DisimForMixed, DiversityOccupancy, docxtractr, dotwhisker, ecoengine, edeaR, eemR, EFDR, emil, emuR, estatapi, explor, eyetrackingR, ezec, ezsummary, FactoMineR, finreportr, flora, forestmodel, freqweights, FSA, futureheatwaves, fuzzyjoin, gender, ggalt, ggfortify, ggpmisc, ggraptR, ggspectra, ggvis, gistr, gitlabr, glycanr, googlesheets, graphTweets, gunsales, heemod, highcharter, HydeNet, IATscores, idbr, IMP, internetarchive, laketemps, livechatR, LocFDRPois, longurl, lookupTable, loopr, MazamaSpatialUtils, metricTester, Momocs, morse, mtconnectR, muir, myTAI, ncappc, NCmisc, NPC, nullabor, openair, PAC, packagetrackr, peptider, photobiology, pinnacle.API, pixiedust, pmc, PopED, poppr, prepdat, pRF, purrr, qdap, qwraps2, randNames, rbison, rchess, rcicr, RCMIP5, rcrossref, RDML, rdrop2, rebird, refund.shiny, rerddap, resumer, rfishbase, rgho, rmcfs, RNeXML, rnoaa, rpcdsearch, rplexos, rplos, rPref, rscorecard, RSQLServer, rtimes, RtutoR, rvertnet, rwunderground, saeSim, scholar, SciencesPo, sejmRP, shazam, simPH, sjmisc, sjPlot, solrium, sorvi, SpaDES, sprintfr, srvyr, ss3sim, statar, stationaRy, stplanr, strptimer, SWMPr, taber, tadaatoolbox, textreuse, tidyjson, tidyr, Tmisc, traits, useful, vdmR, wakefield, WHO, wordbankr, WufooR, yorkr, Zelig, ZeligChoice
ddpcr, explor, ggraptR, heemod, machina, merTools, RtutoR, shinystan, wppExplorer
bindata, Biocomb, cati, chemometrics, classInt, clusterfly, clusterSim, Deducer, dpcR, dprep, DrugClust, EnsembleBase, fungible, gld, hda, hybridEnsemble, hydroTSM, IntClust, lfl, LOGIT, LOST, MetaLandSim, mistral, MixGHD, mlearning, msr, nproc, optBiomarker, PASWR2, ppiPre, preprocomb, rasclass, RcmdrMisc, RecordLinkage, REndo, rminer, robCompositions, RObsDat, RobustEM, RTextTools, sdcMicro, simPop, SixSigma, sprint, SSDM, StatDA, stylo, SwarmSVM, symbolicDA, tableone, translateSPSS2R, TTAinterfaceTrendAnalysis, VIM, xseq
bujar, CorReg, epoc, LINselect, smart, sparseLDA
Bchron, convoSPAT, corregp, ei, eiCompare, FactoMineR, flexCWM, IsotopeR, lessR, mcmcse, metaSEM, mixOmics, MNM, MotilityLab, pca3d, qgraph, RobustEM, scatterD3, SciViews, soc.ca, specmine
antitrust, cape, climwin, intamap, mev, RecordLinkage, rtdists, SimCorMultRes
BinaryEPPM, carcass, corHMM, CountsEPPM, ctmm, DAMOCLES, lymphclon, madness, marked, markovchain, MCL, msm, MultiMeta, OUwie, popdemo, powerplus, rags2ridges, rugarch, SCGLR, switchnpreg, TKF
EMA, freqweights, GDAtools, HistDAWass, IntClust, missMDA, pcaBootPlot, RSDA, SHLR
metaplus, mixAK, MultiGHQuad, randomLCA, rstpm2
BLCOP, iClick, lefse, StableEstim, userfriendlyscience
BioGeoBEARS, cati, CluMix, ecospace, pez, RAM, STEPCAM
anacor, Ecfun, ftsa, funcy, hisemi, iWISA, PerFit, refund
cape, ERP, LANDD, nlnet, qgraph, rags2ridges, SimSeq
bootSVD, darch, IsoGene, rmgarch, SpaDES, Stack
accrual, ENiRG, fbati, IsotopeR, MetaLandSim
ADPclust, astrochron, BayesLCA, bayesPop, bipartite, biwavelet, BPEC, CARrampsOcl, chillR, Compositional, convoSPAT, cope, Directional, earlywarnings, eemR, EGRET, etasFLP, fdasrvf, funcy, GeoLight, GEOmap, geospt, hglasso, hht, letsR, lgcp, LICORS, LMERConvenienceFunctions, ltsk, ModelMap, OptimaRegion, popsom, prevR, qlcVisualize, ramps, RNCEP, rNOMADS, RsimMosaic, rworldmap, SEHmodel, smerc, sparseBC, SpatialExtremes, spatsurv, spTest, StMoMo, stocc, SurvCorr, TED, TideCurves, topologyGSA, treescape, vmsbase
Anthropometry, bapred, cccd, customizedTraining, dprep, gstat, HighDimOut, hybridEnsemble, LICORS, mateable, TDA, unbalanced
abcrf, ApacheLogProcessor, bayou, bcRep, bdots, BDWreg, bingat, boostr, brainGraph, breakpoint, BSGW, bst, calibrar, cape, caret, Causata, CFC, Compositional, covmat, D2C, dCovTS, Directional, dtwclust, EasyMARK, EFDR, ei, ENMeval, enpls, EnsembleBase, EpiModel, exifr, ezsim, fdasrvf, fuzzyforest, gdalUtils, GENLIB, gimme, gimms, grpss, GWLelast, GWRM, hbm, hdnom, HighDimOut, HMP, HMPTrees, hybridModels, icenReg, iLaplace, Information, intercure, JBTools, LANDD, ldamatch, lfl, lint, LPR, mbest, Mediana, metricTester, mistral, Morpho, mpath, mplot, mvcwt, MXM, myTAI, NMF, OmicKriging, opentraj, paleoTS, parallelML, parallelSVM, ParetoPosStable, pec, performanceEstimation, phenex, phylocurve, polywog, prettymapr, primerTree, prospectr, proteomics, prozor, randomUniformForest, rangeMapper, regRSM, resemble, reval, RKEEL, RobustEM, robustrao, rosm, rplexos, RRreg, RSNPset, RStoolbox, rusda, semsfa, SGP, shazam, SHLR, SimDesign, simPop, siRSM, spacom, spectral.methods, sperich, ss3sim, StAMPP, taxize, TED, text2vec, timeSeq, toaster, tsDyn, TSMining, TSP, vardpoor, VSURF, WGCNA, YaleToolkit, ykmeans
AEDForecasting, bfast, cricketr, gpDDE, iClick, lfl, midasr, msltrend, tsDyn, tsoutliers
acmeR, Amelia, AzureML, DDIwR, Deducer, DescTools, EffectLiteR, fSRM, Hmisc, intsvy, lessR, maptools, miceadds, pmg, prevR, R2MLwiN, RcmdrPlugin.BCA, retistruct, rio, rsatscan, RStata, SchemaOnRead, sdcMicroGUI, Sofi, spsurvey, synthpop, translateSPSS2R, userfriendlyscience, VIMGUI, vmsbase
curlconverter, ggThemeAssist, knitr, Rd2roxygen, RFormatter, Rz
AER, bdynsys, betareg, BinaryEPPM, cdfquantreg, Countr, CountsEPPM, crch, ExtremeBounds, fdaMixed, frontier, gcmr, glmx, greport, growcurves, HBglm, inferference, ivfixed, ivpanel, jmcm, lfe, mnlogit, moult, npmv, oaxaca, plsRbeta, polywog, psychomix, psychotree, rddtools, sampleSelection, SCGLR, thsls, tosls, varian
nullabor, RPANDA, semiArtificial, stream, tspmeta
discSurv, gitlabr, hpoPlot, manifestoR, networkreporting, ontologyPlot, saeSim, sqliter, translate
darch, fbRads, futile.matrix, ggraptR, ISOpureR, tawny, tawny.types
biomod2, bujar, EnsembleBase, inTrees, mvtboost, SSDM
BioGeoBEARS, comato, DAMisc, Dominance, drLumi, Ecfun, ENiRG, fheatmap, FSA, gmodels, gplots, likeLTD, lmms, LOST, MIPHENO, NetComp, polySegratio, powerbydesign, qdap, QTLRel, rAvis, RbioRXN, rioja, RKEEL, rtematres, simSummary, sisus, TSmisc, vardpoor, wux
aftgee, CorrBin, Cprob, ipw, MethylCapSig, SHLR, Zelig
BMhyd, entropart, evobiR, geomorph, lefse, metricTester, phylocurve, pmc, RADami, Rphylopars, treeplyr
geophys, RFOC, rNOMADS, Rquake, RTOMO, s2dverification
betapart, cati, curvHDR, DepthProc, gdimap, hypervolume, imPois, Momocs, pavo, pdfCluster, restlos, retistruct, rLiDAR, spaMM, STEPCAM, tmle.npvi
convoSPAT, gcmr, reportRx, TED, UncerIn2
birdring, crimelinkage, diveMove, fuzzyjoin, gfcanalysis, ggmap, GWLelast, lakemorpho, letsR, marmap, RStoolbox, stplanr, tmap
DescribeDisplay, ggmcmc, LANDD, MissingDataGUI, PopGenReport, robCompositions, specmine, svdvis, toaster, userfriendlyscience, vdmR
causaleffect, osmplotr, pcalg, piecewiseSEM, qgraph, stablespec
choroplethr, OutbreakTools, RAM, sidier, spoccutils, SWMPr, toaster, tweet2r
CosmoPhotoz, futureheatwaves, PSAboot, RcmdrPlugin.KMggplot2, RtutoR, toaster
graphicalVAR, NHMSAR, qgraph, scout, SelvarMix, shock, SparseTSCGM
anoint, c060, Causata, ComICS, CorReg, customizedTraining, EnsembleBase, EnsemblePenReg, FADA, graphicalVAR, GWLelast, hdi, hdm, hdnom, hit, hybridEnsemble, IsingFit, kernDeepStackNet, knockoff, LPR, metafuse, mgm, MPAgenomics, mpath, mplot, msr, nproc, parboost, polywog, RSDA, rsig, RTextTools, sparsereg, stm, SurvRank, XMRF
cooccur, CryptRndTest, dplR, homomorpheR, kantorovich, partitions, pcalg, robustrao
bayesPop, gtrendsR, MetaLandSim, mplot, RLumShiny, wppExplorer
Compind, mirt, OpenRepGrid, qmethod, TAM, traj, userfriendlyscience
bcRep, bingat, cancerTiming, CluMix, corregp, DNMF, fheatmap, FLLat, FSA, GMD, HMP, IntClust, ionr, JBTools, lmms, matie, MenuCollection, momr, monogeneaGM, msarc, MultiPhen, NCA, optCluster, plotMCMC, quantable, r4ss, RAM, r.jive, RPPanalyzer, SafeQuant, seriation, sesem, shapeR, smart, SSDM, SurvRank, TcGSA, TIMP, TLdating, TopKLists, TROM, xhmmScripts
NMF, playwith, seqHMM, SGP, sidier, simsalapar, SpaDES, treemap
AFM, bamdit, brms, caretEnsemble, ChaosGame, CommT, CosmoPhotoz, covmat, crmPack, DataExplorer, dotwhisker, dynsim, episensr, fSRM, funModeling, gdimap, ggExtra, ggfortify, ggtern, granovaGG, hdnom, Hmisc, IGM.MEA, IntClust, likert, lmms, lsbclust, miscset, morse, mosaic, nima, npregfast, patPRO, PGRdup, Phxnlme, pointRes, prcbench, precrec, preproviz, qdap, QuantumClone, RAM, rangeMapper, RDS, refund.shiny, reproducer, rfPermute, RSPS, rstan, SciencesPo, shinystan, simPH, snht, soc.ca, sparsereg, spikeSlabGAM, statebins, strvalidator, survminer, survMisc, svdvis, SWMPr, TriMatch, UpSetR, userfriendlyscience, varian, vdg, viridis, waffle, yorkr
artfima, brr, copula, dti, gdimap, geospt, geosptdb, mbbefd, MBESS, rtdists
AFM, automap, EFDR, GSIF, hydroTSM, intamap, intamapInteractive, ltsk, meteo, plotKML, prevR, psgp, rtop
datamart, MplusAutomation, smbinning, SpecHelpers, vmsbase
cowplot, GGally, ggalt, ggplot2, ggtern, gridExtra, hierarchicalSets, Hmisc, ncappc, pheatmap, strvalidator, tcR, waffle
apmsWAPP, AutoModel, BayesFactor, bootnet, BradleyTerry2, CoClust, CoImp, conting, cooptrees, datautils, drc, eiwild, gdata, GGMselect, gplots, hierfstat, HKprocess, IGM.MEA, IntClust, LINselect, LogicForest, MarkowitzR, metaMix, mixedMem, MuViCP, NSM3, paleobioDB, Pasha, PolyPatEx, polySegratioMM, qgraph, r4ss, randomUniformForest, RankAggreg, reservoir, RevEcoR, rmetasim, SGP, shinystan, sirt, sisus, smart, ss3sim, STEPCAM, supcluster, svs, TcGSA, TROM, vqtl
extremevalues, GrammR, maGUI, metagear, playwith, plfMA, R2STATS, RQDA, SeqGrapheR, strvalidator, TR8, vmsbase
GrammR, maGUI, metagear, PKgraph, plfMA, R2STATS, SeqGrapheR, strvalidator, vmsbase
ImportExport, mitml, rio, SchemaOnRead, sjmisc, tadaatoolbox, webuse
datadr, extracat, openair, pitchRx, rasterVis, rbokeh, trelliscope
ABCanalysis, aqp, BaBooN, bdynsys, brainGraph, CANSIM2R, choroplethr, CluMix, Compind, datacheck, DeducerSpatial, drLumi, fdapace, FedData, FSA, Gmisc, Greg, HH, HistogramTools, hydroPSO, intsvy, lazyWeave, lmerTest, mapStats, MatchLinReg, matchMulti, mediation, miceadds, momr, MXM, nbpMatching, ndl, nhanesA, nlrr, NSM3, PerFit, pixiedust, progenyClust, qgraph, rags2ridges, RcmdrMisc, redcapAPI, remix, rmngb, RPPanalyzer, SASxport, scape, sdcMicroGUI, SDD, SensMixed, sharpshootR, smacof, SocialMediaLab, soilDB, strataG, SvyNom, TopKLists, TraMineR, translateSPSS2R, VIMGUI, WGCNA, wppExplorer, wux, x12GUI, xkcd, xpose4
DT, formattable, ggiraph, ggvis, highcharter, htmlwidgets, leaflet, mapview, metricsgraphics, miniUI, pixiedust, questionr, radarchart, rAmCharts, rglwidget, rmarkdown, rmdformats, shiny, shinybootstrap2, shinyBS, shinydashboard, shinyFiles, shinyjs, tmap, tufte, vegalite, visNetwork
d3heatmap, DiagrammeR, diffr, DT, dygraphs, edgebundleR, formattable, ggiraph, gSEM, highcharter, leaflet, mapview, metricsgraphics, networkD3, pairsD3, plotly, qrage, qtlcharts, radarchart, rAmCharts, rbokeh, rchess, rglwidget, rhandsontable, rpivotTable, scatterD3, svgPanZoom, threejs, tmap, treescape, trelliscope, vegalite, visNetwork
boxr, emuR, jug, opencpu, rfigshare, servr, shiny, SocialMediaLab, spectrino, switchrGist, tabplotd3
abbyyR, alm, analogsea, AntWeb, archivist, archivist.github, aRxiv, atsd, backblazer, benchmarkme, bigrquery, biomartr, bold, boxr, brranching, cdcfluview, chillR, chromer, ckanr, covr, cranlogs, crunch, curlconverter, dataonderivatives, dataRetrieval, ddeploy, devtools, diezeit, distcomp, dpmr, ecb, ecoengine, elastic, enigma, estatapi, eurostat, federalregister, fitbitScraper, flora, fulltext, gender, genderizeR, geocodeHERE, geojsonio, geoknife, gistr, gitlabr, gmailr, gmum.r, googleAuthR, googleformr, googlesheets, hdr, hoardeR, htmltab, httpcache, idbr, imguR, internetarchive, junr, knitcitations, lintr, longurl, lucr, lumendb, Luminescence, machina, manifestoR, mapr, miniCRAN, move, neotoma, oai, OECD, opencpu, osmplotr, packagetrackr, pageviews, pangaear, pdfetch, pdftables, pinnacle.API, plotly, pollstR, primerTree, prism, pushoverr, pvsR, pxweb, Quandl, quickmapr, randNames, rbhl, rbison, rclinicaltrials, RCriteo, rcrossref, rdian, rdnb, rdrop2, rdryad, rebird, rechonest, redcapAPI, REDCapR, RefManageR, rentrez, repmis, rerddap, rfigshare, rfishbase, rfisheries, rfml, rfoaas, RForcecom, RGA, rgbif, rgeolocate, rgho, ridigbio, rinat, Rmonkey, rnbn, RNeo4j, RNeXML, rnoaa, robotstxt, ROpenWeatherMap, ROptimizely, rorcid, rotl, rplos, RPresto, RPublica, rredlist, rrefine, rscopus, RSiteCatalyst, rsnps, RSocrata, rstatscn, rsunlight, rtimes, rusda, rvertnet, rvest, rWBclimate, rwunderground, RYandexTranslate, scholar, SocialMediaLab, SocialMediaMineR, solr, solrium, SpaDES, spareserver, spocc, spoccutils, stmBrowser, stplanr, stringgaussnet, swirl, SWMPr, taxize, telegram, threewords, tigris, traits, transcribeR, translateR, tuber, twitteR, urlshorteneR, vegdata, WaterML, webchem, WHO, whoami, WikidataR, wikipediatrend, WikiSocio, WufooR, yhatr, yummlyr
adegenet, AFM, alakazam, aop, arulesViz, BacArena, backShift, BANFF, betalink, bipartite, bnstruct, BoolNet, btergm, cancerGI, cape, causaleffect, CausalFX, CDVine, CIDnetworks, comato, crimelinkage, DCGL, degreenet, diffusionMap, Dominance, DSviaDRM, edgebundleR, fbRanks, FCMapper, FedData, flows, FrF2, gemtc, GERGM, ggenealogy, gimme, gmum.r, gRain, graphTweets, gRbase, gRim, gromovlab, highcharter, igraphinshiny, influenceR, intergraph, kknn, LANDD, lintr, lvm4net, markovchain, MatchingFrontier, matie, mixOmics, MRS, nat, nat.templatebrains, netClass, netgen, nets, nettools, networkTomography, nlnet, osmplotr, outbreaker, pcalg, PGRdup, phangorn, phylosignal, poplite, poppr, ppiPre, qdap, qgraph, QuACN, rags2ridges, RcmdrPlugin.RMTCJags, RDS, RedditExtractoR, restlos, RevEcoR, rmcfs, robustrao, RPANDA, rPref, RQDA, semPlot, SeqGrapheR, seqHMM, SetRank, sharpshootR, shock, SID, sidier, simcausal, sirt, smart, smerc, smnet, snowboot, SNscan, SocialMediaLab, SpaDES, SSN, stplanr, stringgaussnet, structSSI, synbreed, TDA, tnam, treemap, VertexSimilarity, VineCopula, VSE, WikiSocio, XMRF
mlearning, optBiomarker, RecordLinkage, RTextTools, SurvRank
bigpca, gyriq, igraph, OmicKriging, textmineR
BOIN, GSSE, hisemi, ORCME, orderedLasso, pi0
boostr, doRNG, foreach, iLaplace, Information, intercure, iterpc, itertools2, ldamatch, lgcp, LPR, mistral, neuroim, paleoTS, polywog, prospectr, randomUniformForest, rcdk, resemble, scidb, semsfa, SGP, shazam, simr, spacom, spatsurv, text2vec, turboEM, YaleToolkit
Ecfun, geomorph, ggmap, gitter, HiveR, imguR, Momocs, qgraph, rcicr, readbitmap, rosm, RsimMosaic, shapeR, StereoMorph, zooimage
alm, analogsea, archivist.github, autovarCore, AzureML, backblazer, BEQI2, bigrquery, binomen, bold, broman, captr, cbsodataR, ckanr, clarifai, colourlovers, covr, cranlogs, crunch, curlconverter, daff, dagitty, dataonderivatives, ddeploy, devtools, diezeit, distcomp, dpmr, ecoengine, elastic, emuR, enigma, eurostat, exCon, fbRads, federalregister, franc, fulltext, gender, geoaxe, geojsonio, getMet, ggvis, gistr, gmailr, googleAuthR, googlesheets, h2o, highcharter, htmlwidgets, httping, httr, idbr, inegiR, jug, junr, lawn, leafletR, lintr, livechatR, machina, manifestoR, MBTAr, mongolite, ndtv, neotoma, opencpu, osrm, pageviews, pdfetch, pinnacle.API, plotly, polidata, pollstR, qtlcharts, Quandl, randNames, rbhl, rbison, rbokeh, rcorpora, rcrossref, RDataCanvas, rdrop2, rebird, rechonest, rentrez, repijson, request, rerddap, reutils, Rexperigen, rfml, RGA, rgbif, rglwidget, rhandsontable, ridigbio, rinat, rio, rjstat, rlist, RMixpanel, rmongodb, Rmonkey, RNeo4j, rnoaa, ROpenWeatherMap, ROptimizely, rorcid, rotl, rplos, RPresto, RPublica, rredlist, rscorecard, RSiteCatalyst, rsnps, RSocrata, rstatscn, rsunlight, rtimes, rtypeform, rvertnet, rWBclimate, RYandexTranslate, seeclickfixr, SensusR, servr, SGP, shiny, shinybootstrap2, SmarterPoland, SocialMediaMineR, solrium, spectrino, spocc, stmBrowser, stmCorrViz, stplanr, taxize, telegram, threejs, tidyjson, traits, trelliscope, urlshorteneR, V8, vegalite, vegdata, visNetwork, webchem, webutils, wellknown, whoami, WikidataR, wikipediatrend, WufooR, x.ent, yhatr, yummlyr, Zelig, ZeligChoice
BKPC, fpc, fPortfolio, funcy, gkmSVM, kernelFactory, LinearizedSVR, pi0, plsRcox, qrjoint, rminer, SwarmSVM, Synth
adegraphics, BiplotGUI, curvHDR, diveMove, DVHmetrics, earlywarnings, gamclass, GeoXp, ggalt, gplots, hdrcde, MSBVAR, prodlim, r2d2, rddtools, SCBmeanfd, SensoMineR, shotGroups, soil.spec, spd, synRNASeqNet, tmap, TSclust, TSdist
dcmr, dlmodeler, MARSS, networkTomography, tsPI
fat2Lpoly, GENLIB, MESS, RVFam, RVPedigree, RVsharing, SHLR
ADPclust, assertive, BEQI2, compareGroups, condformat, confidence, ezknitr, FactoMineR, formattable, gistr, Gmisc, Greg, gSEM, htmlTable, interAdapt, kfigr, Kmisc, knitLatex, knitrBootstrap, liftr, lintr, ncappc, opencpu, optiRum, pixiedust, qmethod, qwraps2, rAmCharts, rchallenge, RcppFaddeeva, ReporteRs, rglwidget, rite, rleafmap, rmarkdown, rmdformats, rNMF, rtable, rticles, survMisc, tufte, ucbthesis, umx, userfriendlyscience, wq
birdring, cdcsis, curvHDR, feature, GPareto, hdrcde, hypervolume, logcondens, rainbow, rugarch, RVPedigree, semiArtificial
futile.logger, futile.matrix, lambda.tools, tawny, tawny.types
chemometrics, CorReg, GGMselect, gpDDE, NHMSAR, plsRcox
ade4TkGUI, adegraphics, agridat, AICcmodavg, aLFQ, ALTopt, analogue, apc, ape, aqp, asbio, automap, bbmle, bdvis, boolean3, c060, caretEnsemble, CDM, cg, ChainLadder, classify, coda, comato, copula, Cprob, cvTools, daewr, DAMisc, DBKGrad, dcmle, DepthProc, desplot, DOBAD, dplR, effects, eiwild, emdbook, EQL, eRm, etm, FactoMineR, faoutlier, fastR, FitAR, fungible, gamclass, gear, GENLIB, ggtern, Giza, Gmisc, gpairs, GPfit, greport, gstat, hexbin, hydroPSO, IGM.MEA, influence.ME, isa2, kdecopula, Kmisc, ldbounds, lfstat, lga, lme4, locfit, LPR, lulcc, maptools, mapview, Matrix, mboost, MCMCpack, metacom, mice, mirtCAT, mixPHM, mountainplot, MplusAutomation, mptools, MSBVAR, msSurv, mvna, mycor, nlme, openair, OUwie, paleofire, pamm, pedometrics, Phxnlme, PKNCA, plm, plotGoogleMaps, plotMCMC, polySegratioMM, PopGenReport, predictmeans, psychomix, qicharts, QTLRel, R2admb, R2STATS, RAM, rangeMapper, RcmdrPlugin.HH, refund, RGraphics, rioja, rminer, RobLox, RobLoxBioC, robustlmm, RPPanalyzer, rrcov, rrcovNA, RSPS, Rssa, runjags, scape, SetMethods, sharpshootR, sisal, SixSigma, slfm, sp, spacetime, SSN, stlplus, stressr, stylo, Surrogate, synbreed, TAM, TestingSimilarity, tiger, tigerstats, timeSeq, trajectories, trelliscope, tripEstimation, VBmix, VineCopula, visreg, waterData, x12GUI, zoo
DAAG, gamclass, greport, Hmisc, hyperSpec, lfstat, mapview, mosaic, mptools, openair, pedometrics, pems.utils, penDvine, qicharts, R2STATS, RcmdrPlugin.temis, sharpshootR, stressr, Surrogate, waterData
faoutlier, gimme, lavaan.shiny, matrixpls, MBESS, NlsyLinks, nonnest2, piecewiseSEM, pscore, qgraph, semPlot, sesem, sirt, TAM, userfriendlyscience
alakazam, assertr, binomen, bioinactivation, chunked, cofeatureR, condformat, datastepr, ddpcr, dplyr, emil, eyetrackingR, forestmodel, ggvis, heemod, jqr, loopr, mosaic, ncappc, openair, poplite, purrr, rbokeh, request, rex, rfishbase, rgho, RNeXML, rscorecard, SciencesPo, scrubr, shazam, simPH, SpaDES, sprintfr, srvyr, statar, strptimer, tadaatoolbox, tibble, tidyr, treeplyr, wrswoR.benchmark
FactoMineR, FitAR, HH, lessR, meifly, mixlm, mplot
covmat, DoE.wrapper, EasyABC, GPfit, hydroPSO, kernDeepStackNet, metagen, polychaosbasics, rrepast
cds, geospt, geosptdb, gpDDE, networkTomography, pi0, restlos, walkr
aroma.affymetrix, aroma.core, future, PSCBS, R.filesets
ARTool, blmeco, brms, climwin, clusterPower, effects, ez, faraway, glmmsr, inferference, LMERConvenienceFunctions, lmSupport, mbest, mediation, metaplus, miceadds, mixlm, MixMAP, mlVAR, MultiRR, MXM, omics, pamm, PBImisc, piecewiseSEM, powerbydesign, R2STATS, refund, refund.shiny, RLRsim, rockchalk, RRreg, rstanarm, RVAideMemoire, RVFam, SensMixed, sjmisc, sjPlot, SoyNAM, spacom, Surrogate, TcGSA, tnam, VCA
AutoModel, betareg, chipPCR, clusterSEs, dynlm, earlywarnings, fRegression, gcmr, georob, glmx, mlogit, mnlogit, plm, rddtools, termstrc, treeclim, vcd
CoImp, hdrcde, KATforDCEMRI, kdecopula, LICORS, paleofire
bmrm, Compind, ergm, label.switching, limSolve, matchingMarkets, mediation, MoTBFs, netgen, QCA, QCAGUI, QCApro, sampling, systemicrisk
aemo, alm, aoristic, APSIM, apsimr, archivist, Biograph, cardioModel, clifro, climwin, cricketr, cruts, dataonderivatives, dataRetrieval, drsmooth, dynatopmodel, ecoengine, edeaR, EGRET, EGRETci, ggpmisc, ggspectra, iClick, iki.dataclim, machina, openair, OptiQuantR, pdfetch, photobiology, PhysActBedRest, plusser, primerTree, RefManageR, RGA, rnoaa, rplexos, rplos, RSQLServer, SensusR, SpaDES, spocc, ss3sim, stationaRy, stplanr, sweidnumbr, TTAinterfaceTrendAnalysis, vetools, Wats
bgeva, GFD, GMMBoost, list, MCPAN, netmeta, permutations, refund, SemiParBIVProbit, SemiParSampleSel, spray
analogsea, aoos, archivist, ARTool, bpa, ckanr, curlconverter, datacheckr, datadr, datastepr, ddpcr, dendextend, dplyr, dpmr, DT, dygraphs, emil, evolqg, FeatureHashing, fulltext, genderizeR, geojsonio, ggvis, gistr, gmailr, Gmisc, googleformr, Greg, gsheet, highcharter, hpoPlot, htmlTable, httping, HydeNet, identifyr, igraph, IsingSampler, jqr, latex2exp, lawn, lazysql, leaflet, lightsout, livechatR, loopr, MakefileR, manifestoR, metricsgraphics, Momocs, nhanesA, NNTbiomarker, ontologyPlot, optigrab, pixiedust, plotly, prettyunits, purrr, rangeMapper, rattle, rbokeh, rdrop2, request, RevEcoR, rex, rgbif, rgho, rglwidget, rhandsontable, rscorecard, rvest, SciencesPo, scrubr, searchable, simmer, sjPlot, spark, sprintfr, srvyr, ss3sim, stplanr, stringr, strptimer, taber, text2vec, tidyr, tigris, useful, vegalite, visNetwork, webshot, wellknown, wordbankr, xgboost
ggmap, openair, pavo, perspectev, rbison, s2dverification
bdvis, etasFLP, ggalt, hyfo, OIdata, qlcVisualize, r4ss, rbokeh, rinat, rvertnet, smerc, SpatialExtremes, SpatialVx, swfscMisc
aoristic, BayesX, biogeo, BPEC, capm, cleangeo, dynatopmodel, ecospat, eeptools, EMbC, geojsonio, ggsn, hyfo, letsR, lgcp, magclass, MapGAM, MetaLandSim, opentraj, pgirmess, plotGoogleMaps, prevR, qlcVisualize, rangeMapper, rAvis, rworldmap, secrlinear, SpatialEpi, SSN, stplanr, SWMPr, tigris, trip, vetools, vmsbase
BEQI2, confidence, datamart, DVHmetrics, ezknitr, formattable, Kmisc, knitr, knitrBootstrap, leaflet, mirtCAT, rite, shinystan, tutorial
cwm, expands, KATforDCEMRI, markovchain, NPC, perARMA, rcicr, rwt
afex, AICcmodavg, apcluster, basefun, benchmarkme, BinOrdNonNor, biom, blockseg, bootnet, brms, btergm, btf, BTYD, cape, ChainLadder, CluMix, coalescentMCMC, codingMatrices, CollocInfer, comato, CompareCausalNetworks, copula, CorReg, Countr, covmat, coxinterval, coxme, CRF, Crossover, ctmm, ctsem, DDD, DESP, diffusionMap, dmt, dnet, DNMF, doBy, dplR, DRaWR, ECOSolveR, EFDR, ergm, eRm, evolqg, expoRkit, ez, fdapace, FDboost, FeatureHashing, FREGAT, funcy, GENLIB, geomorph, GFD, glm.ddR, glmmLasso, glmmsr, gMCP, gmum.r, gnm, goric, graphicalVAR, gRbase, growfunctions, hbm, hbsae, HDPenReg, hierarchicalDS, hierarchicalSets, hisemi, HLMdiag, igraph, influence.ME, influenceR, INLABMA, intercure, IsingFit, kknn, LANDD, lgcp, LICORS, LMERConvenienceFunctions, lpbrim, LPR, ltmle, marked, markovchain, MatrixModels, mboost, medflex, metafuse, metagear, metaMix, metaSEM, mgcv, midasr, mistral, mme, Morpho, moult, MRIaggr, multibiplotGUI, multimark, MuMIn, netClass, netdiffuseR, nettools, neuroim, NORTARA, optBiomarker, optismixture, ordinal, PBImisc, pbkrtest, PEIP, PenCoxFrail, perARMA, PerFit, pez, phangorn, phia, phylocurve, pi0, polywog, popgraph, powerplus, prozor, pvclass, qgraph, qrjoint, quanteda, quantreg, R2MLwiN, randomForest.ddR, randomLCA, RcppEigen, refund, repolr, RevEcoR, rmgarch, robustreg, rodd, Rphylopars, RSiena, rsig, RSpectra, rstanarm, RVFam, RVPedigree, scam, SCGLR, scidb, ScreenClean, scrubr, scs, SemiParSampleSel, seqHMM, seqMeta, SHLR, SID, simcausal, SimInf, sirt, sjmisc, smart, smint, SMNCensReg, spacom, spaMM, sparseHessianFD, sparsesvd, spatgraphs, spatstat, spatsurv, sphet, splm, stm, stocc, strum, superbiclust, surveillance, SwarmSVM, synlik, text2vec, threeboost, threejs, TMB, tmlenet, tmle.npvi, tsDyn, umx, varComp, VCA, xgboost, XGR, XMRF
backShift, BEDASSLE, COUSCOus, fdasrvf, geesmv, ICsurv, madness, MarkowitzR, matrixpls, mgm, PCDSpline, qrLMM, qrNLMM, RMark, rodd, sem, SharpeR, Skillings.Mack, stablespec
ACNE, aroma.affymetrix, aroma.cn, aroma.core, bdynsys, bingat, bnclassify, calmate, carx, dplR, fslr, loo, Luminescence, MFHD, mmtfa, peakPick, PSCBS, randomizationInference, SemiParBIVProbit, SGP, statar, stm, WGCNA
DirichletReg, DWreg, HiDimMaxStable, paramlink, rDEA, splm, Zelig
GEOmap, rNOMADS, Rquake, RSurvey, StatDA
apaTables, auRoc, lessR, miceadds, replicationInterval, userfriendlyscience
AdaptGauss, BANFF, Bchron, chemometrics, clustMD, CONDOP, ContaminatedMixt, CorReg, expands, flexCWM, fpc, KScorrect, optCluster, semiArtificial, TipDatingBeast, VBLPCM, vscc, yCrypticRNAs
BayesLCA, BayesSingleSub, blavaan, coarseDataTools, fdrDiscreteNull, HKprocess, HWEBayes, MCPAN, NSUM, PANICr, PortRisk, qmethod, refund, sparsereg, spikeSlabGAM, Zelig
crayon, devtools, heemod, prcbench, rgho, toaster
MAVIS, metagear, metagen, metaplus, NSM3, RcmdrPlugin.MA, reproducer, xmeta
AdaptFitOS, analogue, apsimr, car, causaldrf, cSFM, demography, discSurv, dlnm, drsmooth, DSpat, ez, FCGR, FDboost, fRegression, funreg, FWDselect, gamclass, groc, gsg, Haplin, HLMdiag, landsat, LMERConvenienceFunctions, loa, LW1949, MHTrajectoryR, mirt, ModelMap, mrds, MvBinary, openair, palaeoSig, pitchRx, QRM, QuasiSeq, RcmdrPlugin.HH, refund, reldist, rioja, RLRsim, rstpm2, secr, SEERaBomb, sesem, simPH, sisal, slp, snht, spatstat, spsmooth, SSDM, StatDA, tripEstimation, tsDyn, vegan, vows, WhiteStripe, zetadiv
boxr, gmailr, httr, jug, markdown, RSocrata, servr, shiny
cdom, DBKGrad, downscale, drLumi, FatTailsR, FME, growthcurver, Luminescence, MetaLandSim, Rquake, TIMP
cplm, geosptdb, glmmLasso, GMMBoost, GxM, lme4, optimx, simecol, VARsignR
censReg, frontier, LOST, MAINT.Data, micEcon, micEconAids, micEconCES, micEconSNQP, mvProbit, sampleSelection, yhat
Compositional, ContaminatedMixt, flexCWM, MixGHD, pmcgd
bapred, BayesCR, bayou, blavaan, ContaminatedMixt, cSFM, dma, EasyABC, ei, eiCompare, EMbC, ERP, FADA, flexCWM, HiDimMaxStable, highmean, lavaan, MBESS, mixAK, paleoTS, phytools, pmcgd, psych, SIBER, sn, ssmn, tsDyn, VBmix
betareg, bujar, coin, eaf, flexmix, PSAboot, psychomix, topicmodels
AFM, BrailleR, cSFM, ecd, expands, frontier, hyfo, mvdalab, MVN, nullabor, PDQutils, royston, semsfa, sisus, ssmn
Biograph, breakpoint, CIDnetworks, clustMD, decisionSupport, drLumi, ei, eiCompare, gems, gmnl, httk, iBATCGH, optBiomarker, parfm, phytools, Rchoice, RMark, rriskDistributions, rtdists, sparsereg, TAM
ANOM, cg, coin, Crossover, Deducer, dpcR, drc, drsmooth, gMCP, lsmeans, MCPAN, mixlm, mutoss, rms, sensR, SimComp, TTAinterfaceTrendAnalysis
asbio, BayesComm, BayesCR, BayesFactor, bayesGARCH, BayesMAMS, BayesSingleSub, bayesTFR, bcpmeta, bcrm, bindata, binMto, BinOrdNonNor, BMhyd, Bolstad, boolean3, bootnet, boral, BPEC, BSagri, CALIBERrfimpute, carx, CCTpack, CDVine, CIDnetworks, clinfun, clusteval, clustMD, coin, conting, cope, copula, copulaedas, CorrBin, CorReg, CosmoPhotoz, covsep, crawl, crmPack, csn, decisionSupport, depth.plot, DescTools, DFIT, discSurv, ei, eiCompare, ETC, evolqg, FastGP, fdasrvf, flexsurv, FMsmsnReg, fMultivar, fpc, freestats, fungible, funreg, geiger, gMCP, goric, graphicalVAR, growfunctions, gsg, gyriq, hierarchicalDS, hmmm, HWEBayes, hyperdirichlet, ic.infer, ifa, intamap, interAdapt, iopsych, kernDeepStackNet, latentnet, LICORS, LINselect, list, lrgs, lsmeans, MARSS, matchMulti, matie, maxstat, MCPAN, mcprofile, Mediana, merTools, MESS, miceadds, missMDA, mistral, MixGHD, mixpack, monomvn, mratios, MSBVAR, msm, MTS, multicon, multimark, MultiMeta, multivator, nonnest2, OPDOE, optismixture, pamm, pcaPP, pez, phylometrics, PIGShift, plsRbeta, plsRglm, plsVarSel, pmhtutorial, pomp, PopED, Power2Stage, PowerTOST, protiq, qrLMM, qrNLMM, random.polychor.pa, rase, rebmix, REndo, RobustEM, rpf, rrcov, sampleSelection, SEHmodel, sensitivity2x2xk, shock, SimComp, simexaft, sirt, SmoothHazard, sns, sortinghat, spaMM, sparsediscrim, SparseTSCGM, spikeSlabGAM, SQDA, supcluster, tailDepFun, TAM, tglm, timeROC, tsbridge, TTAinterfaceTrendAnalysis, umx, uniReg, varComp, VineCopula
cruts, hyfo, lgcp, magclass, marmap, ncdf4.helpers, rerddap, s2dverification, SchemaOnRead
BANFF, bingat, btergm, degreenet, EpiModel, epinet, geomnet, ggnetwork, intergraph, SchemaOnRead, sidier, SparseTSCGM, statnet, tnam, toaster
dynsurv, frailtySurv, fungible, georob, LDPD, meteR, miCoPTCM, PCDSpline
agricolae, AICcmodavg, ape, arm, BayesLCA, boostmtree, broom, cardioModel, caret, carx, cem, cg, CLME, coxme, cplm, dlnm, dsm, easyanova, eba, faraway, FindMinIC, gcmr, geesmv, GeNetIt, georob, Greg, GxM, IntegratedJM, investr, lme4, lmms, lqmm, lsmeans, lucid, MARSS, MBESS, MultiSV, nlmeU, nlsem, OPDOE, piecewiseSEM, PKNCA, plm, PopED, psychometric, rareGE, refund, RLRsim, rms, robustlmm, rstanarm, secr, SemiPar, sjmisc, sjPlot, SMPracticals, spacom, spaMM, spdep, sphet, splm, Surrogate, tergm, TTAinterfaceTrendAnalysis, urca, varComp, vcrpart
lme4, OptimaRegion, pomp, ptw, rugarch, seqHMM, spaMM
NLPutils, openNLP, qdap, syuzhet, textreg, textreuse, tm.plugin.alceste, tm.plugin.dc, tm.plugin.europresse, tm.plugin.factiva, tm.plugin.lexisnexis, tm.plugin.mail, tm.plugin.webmining
BaBooN, BayesTree, Biocomb, biomod2, car, chemometrics, CoImp, DAMisc, dprep, EffectLiteR, effects, EnsembleBase, flexmix, forecast, Frames2, fRegression, gnm, Hmisc, hybridEnsemble, ipred, ipw, IsingSampler, mice, mlearning, MXM, NeuralNetTools, oblique.tree, pvsR, rasclass, RcmdrPlugin.BCA, RecordLinkage, rminer, RTextTools, RVAideMemoire, semiArtificial, simPop, spectral.methods, spls, SSDM, tsDyn, VIM
Anthropometry, gpDDE, hybridEnsemble, isotone, mboost, osd, phangorn, rNMF, simest, smacof, TIMP
AID, BrailleR, earlywarnings, momr, moonBook, MVN, myTAI, NSM3, quickReg, royston, SixSigma
antitrust, bbmle, BinaryEPPM, BMhyd, boolean3, CIDnetworks, condGEE, corHMM, Countr, CountsEPPM, ctmm, DoubleExpSeq, ExtDist, fdapace, FDGcopulas, finiteruinprob, flexCWM, frailtySurv, GB2, geostatsp, gofCopula, GPvam, gsg, HAC, inferference, kergp, lava, marked, markophylo, metaplus, metRology, mets, midasr, mirt, MixGHD, mlt, mlt.docreg, mpath, MPTinR, mrds, optimx, OUwie, phytools, pi0, ProbitSpatial, pssm, Rcgmin, RealVAMS, Renext, robustvarComp, rodd, rstpm2, rugarch, sdprisk, sensR, seqHMM, sn, sns, StableEstim, stochprofML, SurvRegCensCov, timereg, TKF, umx, VCA, vcrpart, xmeta
CLME, CUFF, reproducer, rio, stplanr, TROM
BioGeoBEARS, boolean3, calibrar, CatDyn, Countr, covmat, ecd, ExtDist, gear, invGauss, LifeHist, marked, mrds, MRS, rankdist, REndo, Synth
brainGraph, dti, gdimap, MRIaggr, oasis, oro.dicom, oro.pet, spm12r, vows, WhiteStripe
basefun, mpoly, OPDOE, PDQutils, sadists
BrailleR, brr, DecisionCurve, funModeling, rapport, rapportools, summarytools
HiDimMaxStable, matchingMarkets, mpoly, permutations, spray, untb
EcoGenetics, mboost, multilevelPSA, PSAboot, rminer, simPop, synthpop
activity, BayesFactor, caretEnsemble, cdcfluview, easyVerification, longurl, ResourceSelection, warbleR, WikiSocio
CIDnetworks, ctmm, GPareto, lavaan, sirt
afex, car, lmSupport, piecewiseSEM, predictmeans, simr
chemometrics, CosmoPhotoz, DetR, ftsa, lcopula, OutlierDM, rmgarch, rrcov, rrcovHD, smart, specmine, sprm
mmod, PopGenReport, poppr, readGenalex, rmetasim, strataG
apricom, DIFboost, gpDDE, hdnom, mvdalab, pensim
bipartite, cwm, expands, NPC, pRF, RAM, randomizationInference, rankdist, VdgRsm
coalescentMCMC, CommT, corHMM, markophylo, OUwie, paleotree, phytools, poppr, RADami, RAM, recluster, SeqFeatR, timetree, TKF, treescape
adephylo, BMhyd, PCPS, phyext2, phylosignal, SigTree
BMhyd, BPEC, DDD, evobiR, evolqg, hisse, monogeneaGM, OUwie, paleotree, PBD, phylocurve, PhySortR, RAM, recluster, RPANDA, Rphylopars, TKF, treeplyr
betapart, DAMOCLES, lefse, metricTester, nodiv, PCPS, pez, recluster
asbio, plotKML, shapeR, sparkTable, VBmix
ABCanalysis, aqp, asbio, BayesBD, bcRep, bdvis, BioGeoBEARS, cems, cncaGUI, convoSPAT, coreNLP, cricketr, drc, ei, eiCompare, FSA, GFD, gmnl, HTSCluster, IntClust, IsotopeR, JBTools, KernSmoothIRT, kineticF, LogicForest, LW1949, marmap, MatrixCorrelation, mutoss, ncdf.tools, NPCirc, phonR, phytools, plotKML, plotSEMM, PReMiuM, qdap, Rchoice, rminer, SAGA, simr, SimReg, smacpod, vmsbase, xhmmScripts, yhat
chemometrics, chillR, EasyABC, enpls, groc, IntClust, LINselect, miceadds, mixlm, plsRcox, plsVarSel, rminer, rrcovHD, RVAideMemoire, soil.spec, specmine, spls
AFM, colourlovers, d3heatmap, dplR, Fgmutils, ggmap, ggsn, HiveR, imguR, iplots, leaflet, loa, mapview, monographaR, qgraph, rAltmetric, rcdk, readbitmap, ReporteRs, retistruct, RgoogleMaps, rosm, StereoMorph, tikzDevice, trelliscope, zooimage
AssetPricing, basefun, ecd, ggpmisc, hwwntest, iterpc, mpoly, OPDOE, partitions, preseqR, smacof, tolBasis, tsoutliers, untb
AFM, batteryreduction, bdynsys, cdfquantreg, dpcR, eemR, EMSC, fdapace, GUILDS, iemisc, IRISMustangMetrics, IRISSeismic, MatrixCorrelation, mixlm, mousetrap, PEIP, QuasiSeq, SEHmodel, soundecology
Biocomb, biomod2, FAMILY, LogisticDx, LOGIT, mlDNA, randomUniformForest, SCGLR
bnnSurvival, IntClust, ipred, ModelGood, SmoothHazard
bcRep, cccd, dtwSat, HighDimOut, LDAvis, quanteda, spaMM, vdg
broom, CCTpack, CDM, CorrMixed, CTTShiny, ionr, IRTShiny, lavaan.shiny, likert, lmSupport, manifestoR, matrixpls, mousetrap, multilevelPSA, MVN, OpenRepGrid, prepdat, PSAboot, qgraph, qmethod, qrLMM, qrNLMM, quickReg, sdmvspecies, sirt, sjPlot, TAM, traj, TriMatch, userfriendlyscience
curlconverter, cymruservices, estatapi, fuzzyjoin, googlesheets, highcharter, livechatR, RevEcoR
bootnet, diveRsity, gimme, graphicalVAR, IATscores, IsingFit, mlVAR, semPlot, SparseLearner
adagio, BB, directlabels, dti, earlywarnings, expectreg, FinCovRegularization, flexsurv, fPortfolio, GENLIB, goric, gromovlab, hmmm, hybridEnsemble, ic.infer, lavaan, limSolve, list, mboost, mcprofile, mistral, MixtureInf, mlt, monomvn, MoTBFs, nodeHarvest, npbr, npsp, orderedLasso, parma, penDvine, phangorn, pi0, robustrao, rodd, ROI.plugin.quadprog, ScreenClean, simPH, tseries, uniReg, varComp
bdrift, creditr, DMwR, highcharter, qrmtools, tawny, tawny.types, TSmisc
apTreeshape, car, chipPCR, cmprskQR, cobs, Compositional, crs, diveMove, georob, MAVIS, MCMCpack, MXM, NCA, NSM3, OutlierDM, pez, qrLMM, qrNLMM, Qtools, quantspec, rms, RPPanalyzer, SGP, sitar, Zelig
agRee, bamdit, boral, classify, SeqFeatR
bigrquery, choroplethr, coala, datastepr, data.tree, distcomp, dplyr, glmmsr, googleAuthR, homomorpheR, httr, jaatha, loopr, mcparallelDo, mkin, pbdZMQ, prcbench, progress, PythonInR, rchess, rcrossref, RDML, request, RKEEL, robotstxt, rtson, shiny, shopifyr, simcausal, simmer, storr, telegram, tmlenet, vmsbase
constrainedKriging, geoR, georob, lgcp, SpaDES, spatsurv
abcrf, aCRM, aLFQ, bagRboostR, Biocomb, biomod2, CALIBERrfimpute, cem, CONDOP, conformal, ecospat, EnsembleBase, FSelector, fuzzyforest, gamclass, hybridEnsemble, imputeMissings, kernelFactory, LINselect, mlearning, NAM, nodeHarvest, nproc, optBiomarker, OTE, preprocomb, preproviz, pRF, randomForest.ddR, rasclass, RFmarkerDetector, rminer, RTextTools, SPOT, SSDM, synthpop, TLBC, vita, VSURF
boostmtree, ggRandomForests, riskRegression, sprinter, SurvRank
cda, cepp, FDGcopulas, GPareto, mcGlobaloptim
MRIaggr, ProbitSpatial, RsimMosaic, spatialEco, unbalanced
bfast, biogeo, birdring, clhs, cruts, ctmm, DiversityOccupancy, dynatopmodel, EcoGenetics, ecospat, ENMeval, FedData, gdalUtils, GeNetIt, graticule, GSIF, hddtools, ipdw, lakemorpho, leaflet, lgcp, Luminescence, mapview, marmap, MaxentVariableSelection, memgene, MetaLandSim, meteo, mkde, monographaR, mptools, ncdf.tools, nodiv, OpenStreetMap, opentraj, paleofire, plotGoogleMaps, plotKML, prism, qlcVisualize, quickmapr, rangeMapper, rAvis, rleafmap, rLiDAR, rSPACE, RStoolbox, sdm, sdmvspecies, secr, SEHmodel, sirad, SpaDES, spatialEco, spatsurv, speciesgeocodeR, spectral.methods, SSDM, stplanr, tmap, trip, unmarked, wrspathrow
biomod2, cati, gfcanalysis, lulcc, mapview, mptools
aroma.affymetrix, aroma.cn, aroma.core, fulltext, PSCBS, repmis, R.filesets, R.rsp, scholar
betapart, CausalFX, hitandrun, kantorovich, pavo, sisus
BCA, BiodiversityR, learnstats, RcmdrPlugin.DoE, RcmdrPlugin.EACSPIR, RcmdrPlugin.EZR, RcmdrPlugin.FactoMineR, RcmdrPlugin.GWRM, RcmdrPlugin.HH, RcmdrPlugin.IPSUR, RcmdrPlugin.lfstat, RcmdrPlugin.MA, RcmdrPlugin.NMBU, RcmdrPlugin.orloca, RcmdrPlugin.qual, RcmdrPlugin.RMTCJags, RcmdrPlugin.sampling, RcmdrPlugin.SCDA, RcmdrPlugin.SLC, RcmdrPlugin.sos, RcmdrPlugin.survival, RcmdrPlugin.TeachingDemos, RcmdrPlugin.temis, REST
adegraphics, aoristic, aqp, aroma.core, cape, clifro, edgar, EMbC, EpiModel, ergm.ego, fheatmap, ggalt, granovaGG, HH, hierarchicalSets, HiveR, inpdfr, LambertW, leaflet, LICORS, loa, LogisticDx, lpbrim, LPStimeSeries, mapr, mapStats, micromapST, MKmisc, Mondrian, msarc, MSG, msr, mstate, MultiPhen, mvcwt, mvtboost, myTAI, ncdf.tools, NMF, oaColors, openair, OutbreakTools, patPRO, pcaBootPlot, pems.utils, PharmacoGx, pheatmap, plotKML, pqantimalarials, psd, PubMedWordcloud, quantable, rafalib, RAM, rangeMapper, rasterVis, rbefdata, RcmdrPlugin.KMggplot2, RcmdrPlugin.temis, reproducer, RNCEP, RobLox, RobLoxBioC, RSA, scales, sharpshootR, SigTree, sisus, smoof, solaR, SOMbrero, sorvi, spatsurv, specmine, spectral.methods, spoccutils, statebins, statnetWeb, StMoMo, strataG, svdvis, SWMPr, tagcloud, tdr, tmap, toaster, TraMineR, treemap, TROM, vqtl, waffle, Wats, WeightedCluster, xseq
dbmss, markovchain, roll, rPref, SpatPCA, text2vec
acs, archivist, atsd, bigml, biomartr, blsAPI, Causata, clifro, creditr, dams, datamart, demography, dvn, easyVerification, Ecfun, fbRads, FinCal, finreportr, gfcanalysis, gmapsdistance, gProfileR, gtrendsR, GuardianR, h2o, hddtools, HierO, HMDHFDplus, interAdapt, IRISMustangMetrics, IRISSeismic, MODISTools, nhlscrapr, Ohmage, OIdata, OpasnetUtils, osrm, OutbreakTools, paleobioDB, phylosignal, pinnacle.API, plusser, polidata, pubmed.mineR, PubMedWordcloud, qdap, qdapTools, RAdwords, rainfreq, rAltmetric, rAvis, rbefdata, RbioRXN, Rbitcoin, rClinicalCodes, RCriteo, RCryptsy, rdatamarket, rDVR, rechonest, RefManageR, Reol, retrosheet, reutils, Rexperigen, RForcecom, rglobi, rite, RKlout, RLumShiny, RMixpanel, rNOMADS, rnrfa, ROAuth, ROpenWeatherMap, RPresto, RProtoBuf, rpubchem, rsconnect, rsdmx, rsnps, rtematres, rusda, RYandexTranslate, rYoutheria, scidb, seeclickfixr, SocialMediaLab, SocialMediaMineR, spatialEco, stplanr, stringgaussnet, swirl, taRifx.geo, Thinknum, tm.plugin.webmining, TR8, translate, translateR, treebase, ukgasapi, umx, uptimeRobot, warbleR, webchem, WikiSocio, XML2R, ZillowR, zoon
abbyyR, biomartr, dataonderivatives, dataRetrieval, ddpcr, eemR, estatapi, googlesheets, gunsales, mosaic, ncappc, neuroim, readODS, rgho, rrefine, stationaRy, stplanr, traits, webreadr
chillR, dpcR, EEM, lessR, Luminescence, popprxl, RcmdrMisc, rio, SchemaOnRead, TR8
alm, aqp, automap, benchmark, Biograph, bold, climwin, CommT, contoureR, DecisionCurve, denovolyzeR, drLumi, dynsurv, ezsim, GGally, intsvy, kobe, LOGIT, Methplot, MissingDataGUI, multilevelPSA, MultiSV, opentraj, PopGenReport, rags2ridges, RAM, simTool, soilDB, spikeSlabGAM, SurvRank, timeSeq, TR8, TTAinterfaceTrendAnalysis, WRS2
ABHgenotypeR, adegenet, agridat, aLFQ, algstat, AlignStat, alm, aoristic, AppliedPredictiveModeling, apsimr, backShift, BBEST, BEQI2, blockseg, bmmix, broom, cancerGI, CANSIM2R, capm, caret, cda, ChainLadder, classify, clhs, clifro, clusterfly, coefplot, cooccur, CopulaDTA, covmat, cplm, Cubist, cutoffR, DataExplorer, dataRetrieval, dcmr, deconstructSigs, DescribeDisplay, desplot, dtwclust, dtwSat, DVHmetrics, EasyHTMLReport, EcoGenetics, EEM, EpiDynamics, evolqg, Evomorph, exreport, extracat, ez, ezsummary, fheatmap, FinCal, flows, ForeCA, frailtySurv, FreqProf, fSRM, funModeling, G2Sd, gdm, ggcorrplot, gge, ggenealogy, ggmap, ggparallel, ggplot2, gmwm, granovaGG, graphTweets, growcurves, growfunctions, hazus, HH, HLMdiag, hybridModels, hyfo, IATscores, IGM.MEA, laketemps, LambertW, ldatuning, likert, lmms, lsbclust, lsl, magclass, mapStats, marmap, medicalrisk, metaheur, mizer, mlr, Mobilize, Momocs, mosaic, mousetrap, mpoly, MultiMeta, mvdalab, myTAI, ncappc, neotoma, networkreporting, NeuralNetTools, NMF, oaxaca, obAnalytics, OpasnetUtils, openair, orderedLasso, OutbreakTools, patPRO, pdfetch, pdolsms, planar, PlotPrjNetworks, poppr, powerbydesign, pqantimalarials, prepdat, preproviz, pRF, proteomics, PSAboot, pscore, psData, ptycho, qdap, qgraph, quadrupen, radiomics, rAltmetric, RAM, RCMIP5, RDS, refund.shiny, rmcfs, RNeXML, rplos, RStoolbox, rWBclimate, rYoutheria, scmamp, SEERaBomb, SensMixed, sharpshootR, shinystan, simmr, SixSigma, snht, soc.ca, sorvi, SoyNAM, sprm, StMoMo, strataG, structSSI, sValues, svdvis, SWMPr, taRifx, taxize, TcGSA, timeseriesdb, timma, toaster, TripleR, TSMining, tvm, wppExplorer, wq, yorkr
aoristic, birdring, camtrapR, capm, ctmm, dynatopmodel, EcoGenetics, FedData, gdalUtils, geojsonio, geotopbricks, gfcanalysis, GSIF, hddtools, hyfo, lakemorpho, landsat8, letsR, mapview, MazamaSpatialUtils, meteo, OasisR, OpasnetUtils, OpenStreetMap, opentraj, paleofire, pgirmess, plotGoogleMaps, plotKML, PopGenReport, prettymapr, quickmapr, rangeMapper, rAvis, rcanvec, rnrfa, rosm, rWBclimate, SEHmodel, sperich, stplanr, taRifx.geo, tigris, tmap, tripEstimation, tweet2r, wrspathrow, wux
birdring, cleangeo, constrainedKriging, DSpat, dynatopmodel, GeNetIt, geoaxe, geojsonio, GeoXp, gfcanalysis, hierarchicalDS, hyfo, lakemorpho, letsR, lgcp, MazamaSpatialUtils, MetaLandSim, OasisR, osmplotr, pgirmess, quickmapr, rangeBuilder, rangeMapper, RStoolbox, RSurvey, SEHmodel, spatialEco, spatsurv, spsurvey, stplanr, taRifx.geo, tigris, tmap, wildlifeDI, wrspathrow, wux
AFM, anacor, analogueExtra, Anthropometry, Biocomb, biplotbootGUI, cems, ChemoSpec, clusterSim, cncaGUI, crs, curvHDR, DiffusionRgqd, DiffusionRjgqd, dprep, feature, forestFloor, GrammR, graphscan, homals, HUM, imPois, KernSmoothIRT, LMERConvenienceFunctions, matlib, mixOmics, monogeneaGM, Morpho, msir, msr, multibiplotGUI, mvQuad, nanop, neuroim, NPCirc, OceanView, OpenRepGrid, pca3d, phylocurve, pi0, prim, QuantumClone, rase, restlos, retistruct, rglwidget, rLiDAR, RnavGraph, RockFab, Rquake, rsml, SDD, SEERaBomb, shapes, shinyRGL, Sim.DiffProc, sparr, spatgraphs, spatsurv, specmine, SPOT, StatDA, Surrogate, symbolicDA, termstrc, tolerance, treescape, vegan3d
CRF, fPortfolio, gemtc, HotDeckImputation, MCDA, MultAlloc, networkTomography, npbr, parma, ROI.plugin.glpk
choroplethr, ggmap, loa, openair, PopGenReport, RAM, stplanr
bayesDem, clusterfly, GrammR, inpdfr, maGUI, mrMLM, PKgraph, playwith, rattle, rggobi, RQDA, Rz, strvalidator, VIMGUI, WMCapacity, x12GUI
bamdit, bayescount, bayesmix, bdpopt, BTSPAS, CCTpack, crmPack, dclone, EasyMARK, gemtc, jagsUI, morse, SIBER, StatMethRank
BACA, boilerpipeR, coreNLP, Deducer, DeducerExtras, expands, G2Sd, hive, llama, mailR, mpoly, mutossGUI, Myrrix, Myrrixjars, openNLP, openNLPdata, OpenStreetMap, PortfolioEffectEstim, PortfolioEffectHFT, prcbench, rcdk, ReporteRs, ReporteRsjars, RFreak, RKEA, RKEAjars, RMOAjars, RSQLServer, RWeka, RWekajars, RxnSim, subspace, TSsdmx, wordnet, XLConnect, XLConnectJars
AntWeb, aop, argparse, BerlinData, blsAPI, Causata, d3Network, edgebundleR, geonames, GetoptLong, ggmap, helsinki, james.analysis, mpoly, nhlscrapr, OpasnetUtils, OutbreakTools, paleobioDB, pinnacle.API, prettymapr, RAdwords, rbefdata, rClinicalCodes, rethinker, rfisheries, rglobi, rnrfa, rosm, SmarterPoland, SocialMediaLab, solr, sotkanet, StereoMorph, stmBrowser, structSSI, twitteR, uptimeRobot, vdmR, warbleR, yhatr
bigml, biom, datamart, FAOSTAT, fitbitScraper, googleVis, gridSVG, GuardianR, knockoff, LDAvis, OData, Ohmage, PAC, plusser, pxweb, rAltmetric, Rbitcoin, RCryptsy, rdatamarket, RedditExtractoR, RefManageR, rfigshare, RgoogleMaps, rpubchem, RPushbullet, rsconnect, RSDA, rYoutheria, shinyFiles, shopifyr, stringgaussnet, switchrGist, tabplotd3, taRifx.geo, Thinknum, timeseriesdb, tm.plugin.webmining, translate, translateR, WaterML
datastepr, highcharter, rAmCharts, RDML, rrefine
BrailleR, caRpools, compareGroups, DataExplorer, gistr, Gmisc, knitrBootstrap, liftr, monographaR, prereg, rchallenge, resumer, revealjs, rmdformats, rmdshower, rticles, RtutoR, swirlify, tufte, tutorial
ACNE, aroma.affymetrix, aroma.apd, aroma.cn, aroma.core, calmate, cgdsr, NPCD, PSCBS, R.cache, R.devices, R.filesets, R.huge, R.matlab, R.rsp, rtf, R.utils, sisal, tmle.npvi
downscale, ecd, HH, ldatuning, OUwie, SNscan
apricom, bujar, cg, Daim, ecospat, Greg, greport, haplo.stats, hdnom, lodGWAS, LogisticDx, mztwinreg, nlrr, pec, plsRcox, riskRegression, shrink, spatialEco, Surrogate, SvyNom, VizOR
betas, covmat, groc, qqtest, robustvarComp
CerioliOutlierDetection, chemometrics, chipPCR, complmrob, covmat, cvTools, DetR, ergm, fAssets, fpc, fPortfolio, georob, GeoXp, groc, MKmisc, MVN, mvoutlier, pcalg, robreg3S, robustlmm, robustloggamma, robustvarComp, sdcMicro, semiArtificial, shotGroups, sprm, StatDA, tergm, VIM
aLFQ, AutoModel, Biocomb, btergm, DMwR, DRaWR, DrugClust, EMP, funModeling, gkmSVM, hybridEnsemble, lulcc, mlDNA, MRIaggr, MXM, netClass, OmicKriging, prcbench, RFmarkerDetector
ACNE, aroma.affymetrix, aroma.apd, aroma.cn, aroma.core, calmate, cgdsr, PSCBS, R.cache, R.devices, R.huge, R.matlab, R.rsp, rtf, tmle.npvi
addhazard, BayesCR, bvpSolve, condGEE, drLumi, fbati, nettools, RadTran, rodd, sdprisk, StMoMo
BCA, Biocomb, biomod2, bnclassify, bst, CORElearn, CorReg, DMwR, dprep, fastAdaboost, gamclass, Harvest.Tree, Hmisc, hybridEnsemble, ibmdbR, ipred, MergeGUI, mice, PSAboot, RcmdrPlugin.BCA, RecordLinkage, rminer, rms, rotationForest, SPOT, SSDM, supclust, SurvRank, synthpop, vcrpart, VSURF
GEOmap, geophys, ProfessR, RFOC, Rquake, RSEIS, RTOMO
ACDm, clickstream, fPortfolio, guess, mrds, rmgarch, rugarch, TBSSurvival, wqs
archivist, BatchExperiments, BatchJobs, CollapsABEL, ecd, emuR, maGUI, marmap, poplite, rangeMapper, rplexos, SciencesPo, SEERaBomb, SGP, smnet, sqliter, TSSQLite, tweet2r, UPMASK, vmsbase
devtools, DiagrammeR, getPass, ggThemeAssist, GUIProfiler, lintr, questionr, RNeo4j, rsconnect, summarytools
ACNE, alphahull, aroma.apd, bedr, Causata, CollapsABEL, demi, dplR, edgar, EEM, eiCompare, ezknitr, fslr, gdalUtils, hoardeR, mailR, mcparallelDo, MPAgenomics, PopGenReport, PSCBS, qrcode, R.cache, R.devices, ReporteRs, R.filesets, R.huge, R.matlab, R.rsp, rvg, SDMTools, snplist, SpaDES, spm12r, stplanr, TBSSurvival
finreportr, googleformr, gsheet, MazamaSpatialUtils, nhanesA, rUnemploymentData, scholar, sejmRP, traits, webchem, wikipediatrend
bayesPop, birdring, mapr, SensusR, spoccutils, virtualspecies, wux
Frames2, popgraph, RRTCS, Sofi, SurvRank
betareg, censReg, clusterSEs, fxregime, gcmr, glmx, glogis, Greg, lfe, MarkowitzR, maxLik, medflex, mlt, multcomp, multiwayvcov, nonnest2, party, plm, rddtools, ssym, systemfit, termstrc, vcrpart, Zelig
alakazam, aqp, backtestGraphics, bdrift, bdscale, benchmark, brainGraph, choroplethr, clhs, clifro, complmrob, condformat, covmat, ctmm, d3heatmap, DataExplorer, Deducer, DescribeDisplay, DiagrammeR, drc, dtwSat, EasyHTMLReport, EpiBayes, extracat, ez, FAOSTAT, fslr, fSRM, funModeling, ggalt, ggfortify, ggmap, ggplot2, ggsci, ggspectra, ggtern, ggthemes, gmwm, hierarchicalSets, ldatuning, leaflet, mapview, mousetrap, ncappc, NeuralNetTools, optiRum, OutbreakTools, paleobioDB, pheatmap, plotKML, plotly, primerTree, qdap, qicharts, quadrupen, quantable, RADanalysis, RAM, rAvis, rbokeh, RcmdrPlugin.KMggplot2, RDS, RNewsflow, rnoaa, SCGLR, SEERaBomb, SeqFeatR, sharpshootR, shazam, SixSigma, sjPlot, spikeSlabGAM, starma, statebins, strvalidator, survminer, svdvis, tcR, TDA, toaster, useful, vetools, vqtl
anacor, arulesViz, asbio, caRpools, cricketr, diffusionMap, FactoMineR, fractal, FrF2, homals, PharmPow, phytools, pi0, RSDA, shapes, Sim.DiffProc, SOMbrero, specmine, vegan3d
Actigraphy, lefse, NORRRM, raincpc, rainfreq, shazam, spatialEco, sperich, SSDM
adegenet, alakazam, aLFQ, AlignStat, apmsWAPP, caRpools, CONDOP, evobiR, gkmSVM, gquad, megaptera, prozor, SafeQuant, shazam, signalHsmm, sivipm
arulesViz, corrgram, matie, pergola, qlcVisualize
FindMinIC, intReg, NIPTeR, relations, sdcMicro
CDM, Demerelate, distrMod, FCGR, FrF2, lokern, mcmcplots, mirt, pcalg, RADanalysis, rags2ridges, random.polychor.pa, ReliabilityTheory, simsalapar, sirt, TAM, xseq
cape, circlize, diffEq, EpiBayes, Luminescence, marmap, NPCirc, OceanView, plspm, RBPcurve, rmgarch, vows
Anthropometry, biplotbootGUI, cncaGUI, LOST, multibiplotGUI, symbolicDA
AdaptGauss, adegenet, AFM, backtestGraphics, BBEST, capm, ChannelAttributionApp, chipPCR, cosinor, CosmoPhotoz, crawl, CTTShiny, datacheck, ddpcr, distcomp, diveRsity, dpcR, dropR, DVHmetrics, DynNom, edgebundleR, EffectLiteR, evobiR, explor, flora, formattable, FreqProf, G2Sd, ggExtra, ggraptR, ggThemeAssist, ggvis, HH, igraphinshiny, IMP, interAdapt, IRTShiny, lavaan.shiny, learnstats, lightsout, MAVIS, merTools, miniUI, mldr, mlr, mplot, mwaved, NNTbiomarker, npregfast, pairsD3, plotROC, poppr, pqantimalarials, QCA, QCAGUI, questionr, refund.shiny, ReporteRs, rglwidget, rgpui, RLumShiny, rtable, RtutoR, SciencesPo, SensMixed, SHELF, shinyAce, shinybootstrap2, shinyBS, shinydashboard, shinyFiles, shinyjs, shinyRGL, shinythemes, shinyTree, signalHsmm, soc.ca, SOMbrero, SSDM, StereoMorph, timeseriesdb, treemap, treescape, trelliscope, wppExplorer
explor, MAVIS, RtutoR, SensMixed, treescape
AFM, ddpcr, ggExtra, lightsout, RtutoR, shinystan
AEDForecasting, biosignalEMG, chipPCR, dpcR, erp.easy, IRISMustangMetrics, IRISSeismic, perARMA, psd, TLBC, tuneR
fPortfolio, ldatuning, lpmodeler, LPR, movMF, parma, rDEA, relations, RNewsflow, ROI, ROI.plugin.quadprog, ROI.plugin.symphony, skmeans, stm, textcat, tm, tm.plugin.dc, toaster, topicmodels, wordcloud
caRpools, DAMisc, DepthProc, funcy, MuViCP, rase, SDD, sirt
bssn, Compositional, fAssets, fMultivar, mateable, mvdalab, SGP, ssmn
btergm, ftsspec, geomnet, ggnetwork, keyplayer, latentnet, netdiffuseR, OutbreakTools, qgraph, statnetWeb, tnam, VBLPCM
DeducerText, inpdfr, NLPutils, quanteda, tokenizers
BaSTA, georob, meteo, quantspec, rags2ridges, XMRF
adegraphics, AFM, akima, aoristic, aqp, BayesX, bfast, biogeo, birdring, BPEC, camtrapR, capm, CARBayes, CARBayesdata, chillR, cleangeo, clhs, cruts, csrplus, ctmm, downscale, DSpat, dynatopmodel, EcoGenetics, EEM, EFDR, ei, EMbC, flows, gcmr, gdalUtils, gdistance, gear, GeNetIt, geoaxe, geoBayes, geojsonio, geoknife, geoR, geoRglm, gfcanalysis, graphscan, GSIF, gstat, GWLelast, hddtools, helsinki, hydroPSO, hydroTSM, ipdw, Kernelheaping, kineticF, lakemorpho, landsat8, leaflet, letsR, lgcp, ltsk, magclass, mapr, mapStats, mapview, marmap, MazamaSpatialUtils, MetaLandSim, meteo, mkde, Momocs, monographaR, mptools, nodiv, OpasnetUtils, OpenStreetMap, opentraj, osmplotr, osrm, perspectev, pgirmess, plotKML, PopGenReport, popgraph, prettymapr, qlcVisualize, quickmapr, r2d2, rangeMapper, rasterVis, rAvis, rbison, redist, repijson, retistruct, rgeos, rleafmap, rLiDAR, RNCEP, rnrfa, RObsDat, rosm, rSPACE, RStoolbox, RSurvey, rWBclimate, secr, SEHmodel, SensusR, sharpshootR, soilDB, soil.spec, soiltexture, spacetime, SpaDES, spatialEco, SpatialPosition, spatsurv, spcosa, speciesgeocodeR, sperich, sphet, spoccutils, spsann, spTimer, SSDM, taRifx.geo, tigris, tmap, trajectories, tripEstimation, tweet2r, USAboundaries, VIM, vmsbase, VTrack, wildlifeDI, wkb, wrspathrow
gstat, meteo, plotKML, RObsDat, trajectories, VTrack
CARBayes, CARBayesST, CollocInfer, earlywarnings, growfunctions, MRIaggr, nat.nblast, splm
baseline, cobs, DDD, DESP, expoRkit, gmum.r, netdiffuseR, pawacc, RItools, SwarmSVM
ads, alphahull, dpcR, ecospat, ETAS, hht, highriskzone, intamapInteractive, lgcp, lqr, MetaLandSim, osmplotr, polyCub, qlcVisualize, radiomics, rase, replicatedpp2w, RImageJROI, rLiDAR, smacpod, spatialEco, spatsurv, surveillance, swfscMisc, trip
adegenet, agricolae, CARBayes, CARBayesST, GeNetIt, HSAR, INLABMA, OasisR, pgirmess, redist, saeSim, smerc, spacom, spatialEco, SpatialEpi, spfrontier, sphet, tmap
alphahull, ExceedanceTools, GEOmap, geoR, GeoXp, kineticF, pgirmess, phonR, PrevMap, RCALI, RFOC, RTOMO, seg, SpecHelpers, tspmeta
Bclim, brms, cda, ChainLadder, cplm, dsm, equateIRT, flexCWM, hoa, LogisticDx, mlogit, multimark, mvabund, mvQuad, npmlreg, PanelCount, pglm, planar, R2STATS, RVAideMemoire, x.ent
btergm, ergm.ego, ndtv, networkDynamic, statnet, tsna
bcRep, deductive, fuzzyjoin, lintr, PGRdup, qdap, sjmisc, tcR, TSTr
alakazam, backports, CITAN, curlconverter, dplR, Ecfun, hyphenatr, inpdfr, jug, optigrab, PGRdup, qdapRegex, qlcData, quanteda, randstr, rangeBuilder, rattle, RcmdrPlugin.temis, retrosheet, RndTexExams, roxygen2, rplexos, RPresto, rprime, rprintf, searchable, sejmRP, shazam, SpaDES, sprintfr, stplanr, stringr, strptimer, tidyr, tokenizers, VarfromPDB, wakefield
aemo, afex, AFM, algstat, alm, APSIM, aqp, BatchJobs, BayesFactor, beepr, BerlinData, betalink, biogeo, biomartr, bold, boostr, boxr, broom, brr, BTLLasso, Causata, choroplethr, CLME, CollapsABEL, commentr, cruts, cymruservices, datacheck, data.tree, detector, DiagrammeR, distcomp, docopt, dotwhisker, dplR, drLumi, EasyMARK, eemR, emuR, evaluate, Evomorph, ez, fbRanks, fitbitScraper, fungible, fuzzyjoin, games, genderizeR, GERGM, GetTDData, gfcanalysis, gitlabr, googlesheets, Greg, gsheet, gunsales, highcharter, HistogramTools, hoardeR, htmlTable, hybridModels, HydeNet, IATscores, identifyr, installr, io, IRISMustangMetrics, IRISSeismic, ISOweek, knitr, latex2exp, liftr, lint, lubridate, mailR, managelocalrepo, matlabr, MazamaSpatialUtils, metagear, modules, morse, mtconnectR, muir, netgen, networkreporting, nhanesA, NMF, NNTbiomarker, nparACT, oai, OpenRepGrid, optiRum, P2C2M, pathological, pixiedust, pkgmaker, plotKML, polywog, powerbydesign, primerTree, profr, pryr, PubMedWordcloud, pubprint, pxweb, QCAtools, qrcode, randomcoloR, rapport, rAvis, RbioRXN, rClinicalCodes, RcppOctave, redcapAPI, RefManageR, reportRx, reshape2, RevEcoR, RLogicalOps, RndTexExams, RNeXML, rngtools, rNOMADS, rnrfa, robotstxt, rollply, roxygen2, rpcdsearch, rprime, RSiteCatalyst, rsnps, rsunlight, rUnemploymentData, rusda, ryouready, scholar, SciencesPo, searchConsoleR, selectr, SHLR, simcausal, simPH, simr, SocialMediaLab, SpaDES, spanr, spatsurv, spm12r, sqliter, srd, Stack, statar, stationaRy, stm, stplanr, subspace, surveydata, sweidnumbr, swirl, swirlify, taxize, TcGSA, text2vec, textreuse, tigris, TLBC, tmlenet, translateSPSS2R, tspmeta, TSTr, ucbthesis, urlshorteneR, vetools, vows, vqtl, webchem, wikipediatrend, WikiSocio, wordbankr, wux, x12, x12GUI, x.ent, xgboost, yhatr
DDD, diskImageR, diversitree, geiger, GUILDS, pomp
brr, Haplin, NSM3, PHENIX, userfriendlyscience
capm, causaldrf, EffectLiteR, GB2, ICS, rareGE, SemiParBIVProbit, sirt, srvyr, SvyNom, tab, tableone, Zelig
addhazard, aftgee, AICcmodavg, AIM, BGPhazard, binequality, Biograph, c060, cancerGI, CFC, cg, chngpt, cmprskQR, compareGroups, controlTest, coxphf, CP, DStree, DTR, DynNom, EGRET, EMA, Epi, epoc, FHtest, fitdistrplus, gamlss, ggRandomForests, greport, gyriq, hdnom, hoa, ilc, intercure, ipred, ipw, landest, landpred, lodGWAS, mboost, Mediana, mets, mice, miCoPTCM, MIICD, mixPHM, mlr, mombf, moonBook, msm, MST, muhaz, MXM, nima, party, partykit, pec, plsRcox, pmml, popEpi, powerSurvEpi, prodlim, pseval, quickReg, rankhazard, RcmdrPlugin.KMggplot2, rem, reportRx, reReg, riskRegression, RVFam, sensitivityPStrat, shrink, simexaft, SimHaz, simPH, smcfcs, SMPracticals, spanr, spatsurv, spBayesSurv, srd, SSRMST, stdReg, Surrogate, SurvCorr, survminer, SvyNom, tab, TBSSurvival, TwoPhaseInd, TwoStepCLogit, WCE, WGCNA, xpose4, Zelig
svHttp, svIDE, svSocket, svTools, svWidgets
cancerGI, ChainLadder, erer, micEconAids, micEconCES, micEconSNQP, sampleSelection
bdvis, brranching, myTAI, RNeXML, rusda, TR8, traits
biplotbootGUI, cncaGUI, dynBiplotGUI, fSRM, HierO, multibiplotGUI, Rcmdr, RcmdrPlugin.KMggplot2, RcmdrPlugin.sos, RcmdrPlugin.temis, rite, rSPACE, stylo, TTAinterfaceTrendAnalysis
brr, Ecfun, geospt, hwriterPlus, palaeoSig, proportion, RBPcurve
bedr, lintr, ncappc, Phxnlme, rusda, SixSigma, swirl, testthatsomemore
dse, EvalEst, TScompare, TSdbi, tsfa, TSfame, TSmisc, TSMySQL, TSodbc, TSPostgreSQL, TSsdmx, TSsql, TSSQLite
TSfame, TSmisc, TSodbc, TSPostgreSQL, TSsdmx, TSsql, TSSQLite
broom, cdom, compareDF, edeaR, eemR, EFDR, emil, eurostat, evolqg, explor, eyetrackingR, ezsummary, fuzzyjoin, ggfortify, ggRandomForests, ggspectra, glycanr, googlesheets, heemod, highcharter, IMP, NeuralNetTools, pixiedust, plotly, pmc, qdap, RDML, rfishbase, rgho, RNeXML, rnoaa, rplexos, rtable, shazam, sjmisc, sjPlot, sprintfr, statar, strptimer, SWMPr, textreuse, translateSPSS2R, wordbankr
BLCOP, FatTailsR, GEVStableGarch, iClick, tframePlus
ade4TkGUI, biplotbootGUI, cncaGUI, dynBiplotGUI, FIACH, idendr0, Interatrix, MareyMap, multibiplotGUI, rriskDistributions
edgar, fulltext, genderizeR, inpdfr, ngramrr, PubMedWordcloud, qdap, rClinicalCodes, reproducer, RKEA, RTextTools, SocialMediaLab, textmineR, textreg, tm.plugin.alceste, tm.plugin.europresse, tm.plugin.factiva, tm.plugin.lexisnexis, tm.plugin.mail, tm.plugin.webmining, topicmodels
BayesCR, CARBayes, CARBayesST, ssmn, StatRank
clustMD, copulaedas, gemtc, gmnl, hierarchicalDS, marked, parma, PrevMap, r4ss, randstr, rDEA, Rsolnp, SparseFactorAnalysis, stocc, tglm
AID, conting, CryptRndTest, egcm, erer, forecast, lfl, msltrend, partialAR, PCA4TS, PortRisk, SDD, tsDyn, TSmisc
ei, eiCompare, NHMSAR, optimx, ordinal, vcrpart
apt, autovarCore, CommonTrend, egcm, erer, partialAR, termstrc, tsDyn
AzureML, datapack, emuR, pinnacle.API, RMixpanel, RNeXML, rpg, tigris
curlconverter, daff, dagitty, DiagrammeRsvg, geojsonio, js, lawn, minimist, randomcoloR, rchess, rgbif, rjade, spocc
arulesViz, DoE.base, eeptools, gpairs, HH, pcalg, SciencesPo, sdcMicroGUI, STEPCAM, tadaatoolbox, VIM
adegenet, bcRep, biogeo, cati, cems, Demerelate, DiversityOccupancy, entropart, evolqg, forams, gdm, lefse, memgene, metacom, netassoc, nodiv, paco, PCPS, pez, PopGenReport, poppr, rioja, RVAideMemoire, shapeR, sharpshootR, soundecology, tnam, tspmeta, zetadiv
bedr, caRpools, RAM, stringgaussnet, vmsbase
AICcmodavg, cg, Countr, ExomeDepth, HiDimMaxStable, list, lllcrc, poweRlaw, sads, sampleSelection, SemiParBIVProbit, SemiParSampleSel, smcfcs, snowboot, SparseFactorAnalysis, sparsereg, staTools, Zelig, ZeligChoice
cbsodataR, d3Network, dendextend, devtools, ecoengine, flowr, fulltext, request, rgbif, rplos, spocc, swirlify
edgar, inpdfr, Mobilize, msarc, PubMedWordcloud, qdap, quanteda, rbefdata, reproducer, RNewsflow, SOMbrero, toaster
bayesDem, bayesLife, bayesPop, bayesTFR, wppExplorer
caRpools, DataClean, G2Sd, GetTDData, lar, ODMconverter, psData, qdap, rpcdsearch, rrepast
abbyyR, archiDART, aRxiv, BerlinData, BIGDAWG, biomartr, BoolNet, causaleffect, Causata, chillR, clifro, colourlovers, comato, coreNLP, creditr, cricketr, DataClean, datamart, datapack, dataRetrieval, DDIwR, dplR, dvn, Ecfun, edeaR, edgar, geoknife, gmapsdistance, Gmisc, googlePublicData, googlesheets, graphicsQC, gridSVG, hddtools, HierO, hive, HMDHFDplus, hoardeR, htmltab, inegiR, IRISMustangMetrics, IRISSeismic, letsR, Luminescence, MALDIquantForeign, megaptera, meteoForecast, miniCRAN, mldr, mlxR, MODISTools, mtconnectR, MTurkR, MTurkRGUI, myepisodes, OAIHarvester, OData, ODMconverter, OpenRepGrid, optiRum, osmplotr, pangaear, PBSmodelling, pdfetch, pinnacle.API, plotKML, primerTree, pubmed.mineR, PubMedWordcloud, pvsR, qdap, qdapTools, rAvis, rbefdata, rbhl, rClinicalCodes, rclinicaltrials, RCriteo, RDML, readMLData, readMzXmlData, RefManageR, rentrez, Reol, retrosheet, reutils, RevEcoR, rfigshare, rfml, RForcecom, rio, RKEEL, rlist, RNeXML, rnoaa, rNOMADS, rpubchem, rsdmx, rsml, rsnps, RStoolbox, rtematres, rusda, Ryacas, Sabermetrics, sejmRP, selectr, semPlot, SetRank, soilDB, solr, solrium, sss, stressr, svIDE, SWMPr, TCGA2STAT, TFX, timetree, tmap, tmod, tm.plugin.europresse, tm.plugin.factiva, tm.plugin.lexisnexis, tm.plugin.webmining, TR8, treebase, ukgasapi, ustyc, vegdata, waterData, WaterML, WikiSocio, WMCapacity, ZillowR
bold, cdcfluview, cycleRtools, docxtractr, ecb, finreportr, fulltext, ggiraph, googleformr, googlesheets, gsheet, neotoma, nhanesA, oai, OECD, rcrossref, rdnb, rdryad, readODS, ReporteRs, rerddap, rgbif, rgho, rNOMADS, rversions, rvg, SchemaOnRead, scholar, sejmRP, taxize, traits, W3CMarkupValidator, webchem, wikipediatrend
AICcmodavg, BEQI2, BioGeoBEARS, BrailleR, confidence, Correlplot, Crossover, CUFF, DAMisc, descr, EasyHTMLReport, EMA, hierarchicalDS, inTrees, IsoGene, lfe, lsmeans, MAMA, midrangeMCP, miscset, MplusAutomation, MSBVAR, ncappc, NNTbiomarker, OpasnetUtils, pkgmaker, PopGenReport, qmethod, RecordLinkage, reportRx, reproducer, RItools, robustlmm, SensMixed, shiny, shinystan, SIMMS, SixSigma, sparkTable, spduration, StableEstim, StatDA, summarytools, userfriendlyscience, x.ent
backtestGraphics, carx, covmat, creditr, DMwR, dygraphs, dynatopmodel, ecd, ggpmisc, highcharter, hydroGOF, machina, pdfetch, rmgarch, RObsDat, rugarch, shinystan, spacetime, stressr, tawny, tawny.types, timeseriesdb, TSdist, TSmisc, TTR, vetools
ahp, analogsea, bedr, Causata, cbsodataR, ecd, htmlwidgets, knitr, liftr, nat, qlcData, rapport, rfigshare, rio, rlist, rmarkdown, rmcfs, rsconnect, RSQLServer, rticles, swirl, swirlify, validate, yorkr
ACDm, acss, bfast, carx, covmat, creditr, diskImageR, DMwR, dygraphs, dynatopmodel, ecd, eyetrackingR, FDboost, ggpmisc, GSSE, gstat, gtrendsR, gunsales, hddtools, highcharter, hydroPSO, hyfo, iemisc, iki.dataclim, inegiR, lfl, lfstat, LICORS, Luminescence, manifestoR, mlogit, mptools, msltrend, nparACT, obAnalytics, partialAR, party, pdfetch, PerformanceAnalytics, plm, plotKML, PortRisk, preprocomb, psd, qrmtools, Quandl, quantspec, rasterVis, rmgarch, rnrfa, rugarch, sandwich, scidb, sirad, snht, spacetime, STI, survMisc, tableone, tawny, tawny.types, TED, termstrc, timeseriesdb, translateSPSS2R, trib, tripEstimation, TSdist, tseries, TSmisc, TSsql, TTR, vcrpart, Wats, wq
ACEt, BEDMatrix, bigalgebra, biganalytics, biglasso, bigmemory, bigtabulate, BMRV, Boom, BoomSpikeSlab, bsts, ddalpha, DDRTree, DescTools, dfcomb, dfmta, dplyr, dynsurv, EPGLM, FeatureHashing, fts, FunChisq, GERGM, GiRaF, glmmsr, gmum.r, gpuR, hashmap, haven, iptools, jqr, LANDD, lsgl, MBA, MixedDataImpute, mixedMem, msgl, mvnfast, nabor, odeintr, OpenMx, PACVB, pcalg, phonics, PReMiuM, purrr, Rblpapi, RcppBDT, rcppbugs, RcppMLPACK, RcppShark, RcppStreams, readr, rstan, rstanarm, sgd, sglOptim, simmer, SSN, svglite, synchronicity, TDA, textreuse, TransferEntropy, xml2
bigalgebra, biganalytics, biglasso, bigtabulate, sgd
blkergm, ergm.count, ergm.graphlets, ergm.rank, ergm.userterms, tergm
AbsFilterGSEA, ACEt, AdaptiveSparsity, AHR, Amelia, arrApply, ASPBay, aSPU, BaBooN, BacArena, BayesComm, bayesm, bayou, bcp, bfa, BIFIEsurvey, biglasso, BIPOD, blockmodels, blockseg, BTLLasso, bvarsv, ccaPP, cccp, cda, CDM, CFC, ChannelAttribution, cIRT, cladoRcpp, coala, coneproj, copCAR, cord, Countr, CoxPlus, cqrReg, crawl, Crossover, DepthProc, dfcomb, dfmta, DiffusionRgqd, DiffusionRjgqd, dina, drgee, ECctmc, EloChoice, emIRT, EPGLM, EstHer, FastBandChol, fastM, FBFsearch, fdaMixed, FDRreg, FIACH, fICA, FisHiCal, flip, forecast, fourPNO, FRESA.CAD, gaselect, GeneticTools, geoCount, GERGM, GiRaF, gjam, glamlasso, glcm, glmgraph, GMCM, Gmedian, gmum.r, gmwm, gMWT, GPvam, gRain, graphicalVAR, gRbase, gRim, growcurves, growfunctions, GSE, hawkes, hkevp, HLMdiag, HSAR, hsphase, hypervolume, iBATCGH, icamix, iccbeta, iLaplace, immer, JAGUAR, jmcm, jmotif, kdecopula, Langevin, lpme, lsgl, Luminescence, markophylo, markovchain, MAT, matchingMarkets, matchingR, MatrixCorrelation, mcemGLM, mcIRT, mcmcse, metafolio, mets, mev, miceadds, mirt, mirtCAT, miscF, MiSPU, MixedDataImpute, mixedMem, mixpack, Morpho, moveHMM, mp, Mposterior, MRIaggr, MRS, msgl, MVB, mvcluster, mvnfast, netcoh, netdiffuseR, ngspatial, NNLM, oem, onlinePCA, PACVB, PanelCount, pcalg, PedCNV, PenCoxFrail, phylocurve, phylosignal, planar, polyfreqs, PoweR, PPtreeViz, prospectr, prototest, psd, psgp, PWD, quadrupen, quanteda, rags2ridges, Rborist, rcppbugs, RcppDE, RcppMLPACK, RealVAMS, redist, regsem, repolr, resemble, revealedPrefs, rgam, rmgarch, robustgam, robustHD, robustreg, roll, rotations, Rphylopars, RStoolbox, rstpm2, rugarch, sbmSDP, SBSA, SelvarMix, seqHMM, sgd, sglOptim, sirt, slfm, smoof, snipEM, SparseFactorAnalysis, sparsereg, SpatialEpi, SpatialTools, SpatPCA, spBayesSurv, spduration, starma, stm, stochvol, stplanr, stpm, strum, survAccuracyMeasures, SVMMatch, synlik, TAM, TauStar, textmineR, timma, treeclim, tsBSS, unmarked, VarSelLCM, zic
ADMMnet, BacArena, BayesFactor, btf, clere, CorReg, covafillr, Coxnet, cpgen, DDRTree, DetMCD, DetR, FastGP, FastHCS, FastPCS, FastRCS, fdapace, fdaPDE, Funclustering, gaston, glmmsr, gpuR, gRain, gRbase, hts, icenReg, ISOpureR, kernDeepStackNet, lme4, MediaK, mmand, MPTinR, nabor, oapackage, OpenMx, PReMiuM, ProbitSpatial, Rankcluster, Rclusterpp, RNiftyReg, rpf, RSNPset, RSpectra, rstan, rstanarm, Rvcg, saturnin, spaMM, sparseHessianFD, sparseLTSEigen, TMB, tmg, trustOptim, walkr
dbmss, gaston, markovchain, roll, rPref, SpatPCA, StMoSim, text2vec
CFC, cpgen, dfcomb, dfmta, DNAprofiles, GCPM, JAGUAR, lsgl, matchingMarkets, MRIaggr, msgl, NNLM, sglOptim, textmineR, textreuse
Anthropometry, cpca, kyotil, multivator, plyr, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, tableplot
fitdistrplus, GeneralizedHyperbolic, HyperbolicDist, IPSUR, PhaseType
ChemometricsWithR, deepboost, fscaret, mlr, pmml, rattle
biomod2, explor, Guerry, GUniFrac, MiSPU, polysat, RcmdrPlugin.pointG
EcoGenetics, HWxtest, memgene, polysat, readGenalex, vcfR
agridat, censReg, glmx, gmnl, LinRegInteractive, lmtest, micEconCES, mlogit, mlt.docreg, partykit, plm, REEMtree, sandwich, sjmisc, vcdExtra
agridat, paleofire, RGraphics, Sleuth2, Sleuth3
adegenet, asbio, BayesX, BiodiversityR, DiceEval, dynaTree, EDR, erpR, evd, fBasics, fdasrvf, fMultivar, fractal, gam, kobe, laGP, locfit, oce, ParamHelpers, plgp, portes, quantreg, R2BayesX, rgr, rioja, rpanel, sm, taRifx.geo, VdgRsm, vegdata
ChemoSpec, extracat, hamlet, kselection, pmml, rattle, REPPlab
EFDR, heplots, MSG, pitchRx, plotKML, RGraphics, surveillance
ade4, aqp, asnipe, data.tree, dcGOR, dendextend, enveomics.R, GLSME, hierfstat, HSAUR, HSAUR2, HSAUR3, igraph, MVA, netdiffuseR, ouch, paco, polysat, readGenalex, rncl, rphast, sand, scrm, speciesgeocodeR, structSSI, symmoments, vhica
fdapace, IPSUR, Rcmdr, RcmdrPlugin.EZR, UsingR
BayesFactor, fscaret, GGally, medflex, multitable, optmatch, rstanarm, sjmisc, sjPlot, subsemble, SuperLearner
nutshell, nutshell.audioscrobbler, pmml, rattle, rfml
dagitty, exams, matrixStats, repijson, R.rsp
broom, copula, primer, R2admb, SEERaBomb
bio3d, matpow, mlDNA, nat.nblast, NMF, PopGenome, rsgcc, sgd
dcemriS4, devtools, GGIR, hashFunction, rattle, XML
abd, AER, aod, asbio, bayesboot, broom, CaDENCE, car, CARBayes, ChemometricsWithR, cond, crossReg, DAAG, doRedis, EffectsRelBaseline, ElemStatLearn, emplik, EnvStats, GEVcdn, gMCP, Greg, GSIF, gsubfn, harvestr, hoa, HSAUR, HSAUR2, HSAUR3, investr, IPSUR, ipw, jaatha, LambertW, lme4, logmult, marg, matrixpls, meboot, mirt, mistat, nlreg, npsm, optmatch, proftools, R2HTML, rms, robustbase, semGOF, semPLS, semTools, simTool, Wats
bcrm, BTSPAS, dclone, MethComp, R2WinBUGS
aroma.core, ARTool, corclass, dplR, ggmcmc, R2SWF, R.devices, shiny, trelliscope
apt, gWidgets2RGtk2, mlDNA, ProgGUIinR, rattle, retistruct, Rz
abd, agridat, betareg, bglm, BIFIEsurvey, BiodiversityR, bnormnlr, codingMatrices, compareGroups, Ecdat, Ecfun, effects, fastR, fscaret, gmm, gmnl, gmum.r, GoodmanKruskal, HH, HistData, lmtest, lsmeans, matlib, McSpatial, meboot, mistat, mlogit, Morpho, multcomp, NPC, pedometrics, perturb, pglm, polywog, pscl, R2MLwiN, Rchoice, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, RcmdrPlugin.pointG, rddtools, REdaS, sand, sandwich, SenSrivastava, sla, Sleuth2, Sleuth3, SMIR, strucchange, tableplot, vcdExtra, WRS2
AppliedPredictiveModeling, biomod2, Cubist, data.table, deepboost, discSurv, doParallel, doSNOW, emil, gmum.r, kernDeepStackNet, lulcc, mlr, NeuralNetTools, subsemble, SuperLearner
caretEnsemble, fscaret, paleofire, roughrf, taRifx, taRifx.geo
FNN, gaselect, PLSbiplot1, plsRglm, rknn, soil.spec
FinTS, gsubfn, highfrequency, Hmisc, xts, zoo
archdata, bcpa, move, picante, RGraphics
boostr, catdata, ChemometricsWithR, ElemStatLearn, frbs, FRESA.CAD, fscaret, hmeasure, mlr, RoughSets, soil.spec, subsemble, SuperLearner, TunePareto
BiodiversityR, ChemometricsWithR, clues, condvis, dendextend, e1071, flexclust, freqweights, GDAtools, ggdendro, ggfortify, GMD, grImport, idendr0, languageR, mlr, nor1mix, pdfCluster, r2d2, R2HTML, rattle, REdaS, RGraphics, robustbase, robustfa, sfsmisc, sjPlot, sprint, TraMineR, VisuClust
emil, Greg, mstate, pec, RcmdrPlugin.EZR, survival
AdMit, amen, BayHaz, bcp, bglm, bnormnlr, broom, CARrampsOcl, DiffusionRgqd, DiffusionRjgqd, embryogrowth, gap, GeneFeST, geoCount, geoRglm, ggmcmc, HDInterval, ltbayes, MethComp, MRIaggr, polyfreqs, pscl, R2BayesX, rbugs, SALTSampler, shinystan, surveillance, systemicrisk, zoo
BBmisc, enaR, flexmix, formatR, knitr, peperr, RSiena
agridat, benchmark, choplump, gMCP, HSAUR, HSAUR2, HSAUR3, interval, IPSUR, mlt.docreg, multcomp, partykit, perm, UsingR, vcd
aqp, cba, dendextend, flexsurv, gamlss.util, grImport, mlt.docreg, movMF, netmeta, nodiv, nonrandom, OpenStreetMap, party, psychotree, RandomFields, rasterVis, rattle, Rcmdr, RGraphics, RSurvey, surveillance, SWMPr, tourr, viridis, WRS2
ecp, IPSUR, MCMCglmm, needy, polysat, qrmtools, readGenalex, SNPmaxsel
aftgee, docopulae, mbbefd, npcp, qrmtools, simcausal, simsalapar, simsem
BLCOP, FAiR, NMF, picante, PortfolioAnalytics, subselect
boral, candisc, dendextend, knitrBootstrap, rattle, textreg
betalink, bnclassify, bold, cellranger, dendextend, ggplot2, googlesheets, gtable, jqr, loo, lubridate, Momocs, optiRum, pmc, purrr, rvg, scales, simmer, SpaDES, svglite, taxize, tidyr, traits
GlobalFit, sybil, sybilccFBA, sybilcycleFreeFlux, sybilEFBA
commonmark, data.table, devtools, jsonlite, plotly, rpdo, rtypeform, xml2
assertive.types, checkmate, dplyr, ggswissmaps, installr, itsadug, Lahman, lava, Matrix.utils, partools, ProjectTemplate, rbokeh, rpivotTable, rtop, taRifx, tidyr, Xmisc
aroma.affymetrix, ETLUtils, mitools, oai, oce, pitchRx, ProjectTemplate, quantmod, storr, stream, TSdata, WhopGenome
ade4, CARBayes, dismo, ecolMod, hyperSpec, latticeExtra, PBSmapping, R2Cuba, sp
nanop, npsp, PortfolioAnalytics, RcppDE, SACOBRA, SPOT
calibrar, cOde, fda, PBSmodelling, smfsb
acmeR, archivist, aRxiv, assertive.code, assertive.data, assertive.data.uk, assertive.data.us, assertive.datetimes, assertive.files, assertive.matrices, assertive.models, assertive.numbers, biomartr, broman, checkmate, codyn, covr, DataCombine, doRNG, dpmr, eurostat, flacco, forestFloor, gitlabr, graticule, h2o, hashmap, IalsaSynthesis, icd9, iLaplace, installr, jiebaR, likert, lineup, manifestoR, metafolio, mgarchBEKK, modules, Momocs, mptools, myTAI, nima, NlsyLinks, NMF, npsm, osmplotr, packrat, Perc, pkgmaker, plotly, PSAboot, qtlcharts, radiomics, Rcereal, rclinicaltrials, REDCapR, rfishbase, roxygen2, rpdo, rpivotTable, satellite, smss, testthat, Wats, wikipediatrend, xoi
datafsm, FME, gamclass, IPSUR, markovchain, MetaCycle, PGRdup, RGraphics
colorspace, dplR, rasterVis, RGraphics, RSurvey, viridis
anonymizer, icd9, LDAvis, openssl, R.devices, rmarkdown, robustlmm, R.rsp, R.utils, swirlify, textmineR
BiodiversityR, biogeo, ctmcmove, mapmisc, soilDB
distr, distrRmetrics, distrSim, distrTEst, FinTS, geoCount, IPSUR, RcmdrPlugin.IPSUR, SweaveListingUtils
BayesFactor, Bclim, Causata, dcGOR, dnet, eyetrackingR, fitTetra, JBTools, lfl, lpbrim, MetaPCA, MetaQC, paco, pec, TED, XGR
bayesboot, bayou, clustvarsel, crawl, datafsm, data.tree, DiceKriging, doRNG, dtwclust, EGRETci, evolqg, FREGAT, GA, harvestr, hdnom, intamap, Interatrix, intercure, msm, pbo, plyr, pROC, protr, psgp, rangeMapper, resemble, rpg, simsalapar, solarius, ss3sim, TcGSA, tmlenet, toaster, treatSens
afex, ameco, archivist, assertive.types, bayesGDS, bodenmiller, causaldrf, cbsodataR, checkmate, codingMatrices, codyn, crawl, DepthProc, describer, ecb, enigma, eurostat, fractional, fueleconomy, gapminder, geomnet, ggmap, ggRandomForests, Greg, growthcurver, haven, hdr, hydrostats, JacobiEigen, labelled, Matrix.utils, merTools, metricsgraphics, nycflights13, pitchRx, plotly, pollstR, qualvar, randomizr, rattle, readODS, reval, rex, rivr, robotstxt, rpdo, rpivotTable, RPresto, rtable, shinyAce, SimDesign, simmer, tempcyclesdata, TH.data, tigris, titanic, trelliscope, wikipediatrend, wrswoR, wrswoR.benchmark
benchmarkme, benchmarkmeData, compareGroups, covr, dpcR, qualvar, signalHsmm
A3, benchmark, BiodiversityR, boostr, caret, caretEnsemble, caschrono, catdata, ChemometricsWithR, classifly, clue, coin, Daim, emil, FinTS, flacco, frbs, fscaret, gmum.r, IPSUR, klaR, languageR, mistat, MLmetrics, mlr, pmml, pvar, rattle, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, ripa, RStoolbox, RWeka, soil.spec, SPOT, strucchange, subsemble, SuperLearner, TDMR, tmle.npvi, TunePareto, utiml, VBmix
BiodiversityR, caret, ElemStatLearn, fscaret, mda, mlr, plotmo, rpart.plot, SPOT, subsemble, SuperLearner
catdata, DCchoice, discSurv, Ecfun, gamclass, intReg, micEcon, miscTools, sampleSelection
acss, AER, agridat, BiodiversityR, heplots, psychomix, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.pointG, vcdExtra
AppliedPredictiveModeling, BiodiversityR, caret, emdbook, flexclust, flexmix, fscaret, geostatsp, logmult, MetaPCA, nlmeU, plgp, rattle, robustfa, rrcov
EGRET, fontcm, ggmcmc, ggthemes, RcmdrPlugin.KMggplot2, tagcloud
DiscriMiner, explor, MetaQC, plsdepot, plspm
caret, ChemometricsWithR, coloredICA, fGarch, fmri, fscaret, NMF, steadyICA, yaImpute
caschrono, cati, lawstat, mlDNA, modeest, rattle, stabledist
Hmisc, LinkedMatrix, nat.nblast, RMOA, spaMM
fftwtools, monitoR, psd, ripa, seewave, waveslim
caschrono, fPortfolio, ggfortify, portes, PortfolioAnalytics, simsalapar
asymLD, backShift, bigGP, CompRandFld, crimelinkage, EFDR, ensembleBMA, ensembleMOS, expectreg, extRemes, FDboost, gstat, IPMpack, lava, mboost, mlr, MRIaggr, npsp, palaeoSig, popgraph, RSA, smoothie, spam, SpatioTemporal, SPOT, taRifx.geo, Thermimage
catdata, HSAUR, HSAUR2, HSAUR3, rebmix, tlemix
BayesFactor, Bclim, data.tree, dcGOR, DEoptim, DiceKriging, dnet, dplR, EGRETci, evolqg, eyetrackingR, FinancialInstrument, fitTetra, FREGAT, fxregime, GMCM, harvestr, Interatrix, iterpc, itertools, kergp, kselection, lava, merTools, msm, neuroim, pbo, plyr, protr, ptycho, ripa, rpg, simsalapar, strucchange, TcGSA, tmlenet, treatSens, XGR
dplR, gamclass, ggfortify, lifecontingencies, mFilter, portes, rainbow
AER, aqp, biomod2, CARBayes, causaldrf, dynBiplotGUI, gap, ImportExport, mi, migui, mitools, multcomp, Nippon, oce, papeR, PBSmapping, prabclus, PracTools, ProjectTemplate, rattle, Rcmdr, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, REdaS, rfordummies, RGIFT, semTools, separationplot, simsem, sjmisc, SMIR, spacetime, spdep, survey
evtree, HSAUR3, metafor, partykit, psychotools, quantreg
agridat, BiodiversityR, biomod2, broom, caret, DiceEval, earth, ElemStatLearn, fscaret, LinRegInteractive, locfit, medflex, slp, sm, ssym, subsemble, SuperLearner, tmle.npvi, tsModel, yaImpute, zoon
aods3, broom, depmixS4, gamboostLSS, hnp, mice, mlt.docreg, MNM, PerformanceAnalytics, surveillance
depmixS4, fitdistrplus, gamboostLSS, hnp, PerformanceAnalytics
AzureML, BiodiversityR, caretEnsemble, crimelinkage, dismo, fscaret, mboost, mlr, ModelMap, subsemble, SuperLearner
cba, chemometrics, flexmix, pergola, upclass
data.table, Ecdat, HistogramTools, ipdw, MetaQC, plotMCMC, popReconstruct, primer, ProjectTemplate, rattle, readGenalex, rfigshare, rotl, scape, SII, SMIR, solarius, sorvi, taRifx, taRifx.geo, TH.data, umx
ape, catdata, dlnm, HSAUR, HSAUR2, HSAUR3, longpower, lsmeans
broom, catdata, contrast, dlnm, doBy, etm, fastpseudo, geeM, lava, lsmeans, meboot, MRCV, MuMIn
diversitree, ouch, phytools, PVR, Reol, RNeXML, speciesgeocodeR
DatABEL, FREGAT, MetABEL, PredictABEL, RVPedigree, VariABEL
gear, geoBayes, georob, geostatsp, ipdw, npsp, pedometrics, prevR, RandomFields, rpanel, simba, SpatialPack, spBayes, spTest, taRifx.geo
BiodiversityR, GGally, mapmisc, memgene, speciesgeocodeR
clifro, geoknife, GGally, ggsn, mapr, move, RSMET, trackeR
enigma, ggalt, ggmcmc, iNEXT, plotly, quickReg, tigris
broom, caretEnsemble, catdata, CompareCausalNetworks, EBglmnet, emil, fbRanks, FeatureHashing, flexmix, FRESA.CAD, fscaret, ggfortify, medflex, mlr, ModelGood, nscancor, pmml, randomForestSRC, subsemble, SuperLearner, text2vec
BacArena, sybil, sybilccFBA, sybilcycleFreeFlux, sybilEFBA
bayesTFR, Kmisc, Lahman, NanoStringNorm, spacetime, tfplot, vegdata
FAiR, FinTS, Lambda4, psych, REdaS, semTools
automap, BayesX, lgcp, polyCub, spatsurv, surveillance, UScensus2010
compendiumdb, condvis, dendextend, dendsort, enveomics.R, FRESA.CAD, gmodels, heplots, HistData, MAMA, matR, MKmisc, mlDNA, pbkrtest, PerformanceAnalytics, protiq, rattle, RGraphics, simba, spartan
braidReports, cate, cda, ddpcr, disclapmix, EFDR, evolqg, FField, frailtySurv, futureheatwaves, ggalt, ggmcmc, ggsci, hyfo, iNEXT, ltbayes, medicalrisk, mlt.docreg, mlxR, packcircles, ParamHelpers, planar, pmc, rattle, RcmdrPlugin.MA, remote, RGraphics, rotations, rpf, rstanarm, RStoolbox, SCGLR, sgd, Sofi, solarius, StatRank, surveillance, walkr
Bessel, maRketSim, PearsonDS, spatstat, surveillance, TunePareto
agridat, dismo, gear, georob, GWmodel, ipdw, mgraph, npsp, pedometrics, sos4R, sp, spacetime, spcosa, spsann
DOBAD, fdapace, gmodels, HistData, MetaQC, nonparaeff, paleofire, rattle, readGenalex, R.filesets, SPOT, vhica
baseline, ENmisc, LifeTables, ProgGUIinR, retistruct, RGraphics, vegdata
apt, dbConnect, LifeTables, ProgGUIinR, rattle, retistruct, RGraphics, RGtk2Extras, TopKLists
data.table, ggmap, ggplot2, plotly, RGraphics, RnavGraph, survey, viridis, viridisLite
h5, Rcpp, RcppClassic, RcppCNPy, RcppGSL, RcppZiggurat, RHRV, RProtoBuf
abd, ascii, asVPC, BB, bbmle, bfp, BIFIEsurvey, biomod2, broom, causaldrf, CFC, ClueR, contrast, Deducer, denstrip, emil, epade, fastR, fscaret, ggplot2, GMCM, GSIF, hdnom, htmlTable, IPSUR, languageR, lulcc, MARSS, MissingDataGUI, mlr, nlme, pec, PerformanceAnalytics, planar, plotKML, PopED, PSCBS, randomForestSRC, rattle, Rcmdr, RcmdrPlugin.pointG, rex, RGraphics, rknn, Rmisc, rockchalk, Rz, separationplot, simcausal, simsalapar, sjmisc, Sleuth3, smcUtils, StatMatch, subsemble, SuperLearner
covr, gdtools, Hmisc, LDAvis, networkD3, plotly, qtlcharts, rvg, svglite, svgPanZoom, threejs
aemo, fbRanks, leafletR, nat, packrat, Rcereal, soilDB, stubthat, viridis
asnipe, bcp, bio3d, ConnMatTools, data.tree, diverse, dna, enaR, GGally, igraphdata, isa2, knitrBootstrap, lava, lfe, Libra, loe, metafor, miniCRAN, netdiffuseR, NetSim, osmar, pnea, raster, rbmn, repo, rgp, RGraphics, rnetcarto, rtop, sensitivity, spdep, spdynmod, stm, surface, TDAmapper, threejs, tmlenet, TunePareto, visNetwork
covafillr, dMod, hyperSpec, kergp, MfUSampler, Rclusterpp, Rcpp, RcppClassic, RcppDE, RcppEigen, RcppGSL, Rmalschains
caret, caretEnsemble, ChemometricsWithR, Daim, fscaret, party, RGraphics, sperrorest, subsemble, SuperLearner
DEoptim, dplR, EGRETci, plyr, PortfolioAnalytics, solarius
dyn, FinancialInstrument, quantmod, tframePlus, TSdata, tseries, xts, zoo
GMCM, HistData, httr, pdftools, ReporteRs, RImagePalette, ripa, RNiftyReg, rsvg, webp
ChemoSpec, cowsay, curl, data.tree, dismo, DT, futile.logger, io, jqr, metricsgraphics, networkD3, openssl, quanteda, soilDB, sysfonts
BiodiversityR, caret, caretEnsemble, colorspace, CompareCausalNetworks, conformal, dismo, evtree, fscaret, gamclass, mistral, mlr, pmml, preprocomb, rattle, RStoolbox, sand, SPOT, vcd
AER, bpkde, brms, colorspace, copula, EMMIXuskew, gridGraphics, HistData, HSAUR, HSAUR2, HSAUR3, latentnet, lattice, lava, MRS, MSG, MVA, NCmisc, openair, PBSmodelling, rstan, rstanarm, simsem, stm, survey, vcd
coxme, gap, multic, pbatR, seqMeta, skatMeta, solarius
caret, caretEnsemble, fscaret, gmum.r, hda, mlr, TunePareto
covmat, markovchain, mbbefd, poppr, reports, RNeXML, wrswoR
clusterfly, clValid, COMMUNAL, fscaret, mlr, RankAggreg
ChemometricsWithR, COBRA, directlabels, dna, ElemStatLearn, fscaret, glmnet, knockoff, lassoscore, Libra, mvtboost, scout
acss, Actigraphy, ade4, AER, afex, AppliedPredictiveModeling, BaBooN, baseline, beanplot, betareg, binom, bio3d, BiodiversityR, bnlearn, cati, ChemoSpec, ChoiceModelR, CombMSC, contrast, copCAR, CORElearn, CorrBin, DAAGxtras, dclone, denstrip, desirability, DiceDesign, directlabels, diveMove, dyn, eggCounts, EnvStats, ergm, evaluate, evtree, fda, FuncMap, gamlss.add, gap, geoR, ggplot2, glogis, gridBase, gridDebug, gridExtra, gridSVG, grImport, gsubfn, hamlet, heplots, HistData, HiveR, HSAUR, HSAUR2, HSAUR3, hydroTSM, IPSUR, JoSAE, KRLS, Lahman, languageR, LDheatmap, libamtrack, Lock5withR, LPCM, LPTime, lsmeans, lucid, marmap, MASS, mbbefd, MEMSS, meteoForecast, MethComp, mi, mlbench, mlmRev, mlogit, mlt.docreg, Morpho, mosaicData, movMF, MPDiR, mpMap, multitable, mutoss, MVA, nlmeU, npmlreg, nutshell, Oncotree, OrgMassSpecR, pacman, pagenum, pander, PBImisc, pdc, Perc, PKPDmodels, planar, polyCub, polywog, protViz, psyphy, r2d2, rbokeh, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, RcppDE, RcppZiggurat, remote, reshape2, RFLPtools, rfordummies, RMark, robustbase, robustfa, robustX, rpanel, RSiena, rtf, sand, SASmixed, SCEPtER, SCEPtERbinary, SemiPar, sfsmisc, simecol, simsalapar, Sleuth2, Sleuth3, SMIR, soilDB, SoilR, spdep, sperich, SPOT, SPSL, STAR, StatRank, stellaR, subsemble, SuperLearner, surveillance, survey, tableplot, taRifx, TeachingDemos, tergm, texmex, tmvtnorm, topicmodels, TrackReconstruction, ustyc, vcdExtra, vipor, WeightedCluster, wux, XLConnect
agridat, aqp, directlabels, ergm, hnp, mirt, mlt.docreg, mountainplot, pbo, remote, RGraphics, Rmisc, survSNP, tdr
AICcmodavg, dagitty, ionr, nlsem, OLScurve, psych
cycleRtools, geojsonio, lawn, rnoaa, tigris, wellknown
car, ChemometricsWithR, DAAG, ElemStatLearn, fscaret, gamclass, glmulti, Rcmdr, RcmdrPlugin.NMBU, SenSrivastava, Sleuth2, Sleuth3
flacco, kergp, laGP, mistat, ParamHelpers, SACOBRA, spartan, SPOT, vdg
caretEnsemble, describer, devtools, ggthemes, rex, spaero
agridat, AICcmodavg, ANOM, aod, AzureML, BayesFactor, benchmark, BIFIEsurvey, broom, car, catdata, DAAG, dlnm, doBy, Epi, expp, eyetrackingR, flexmix, glmulti, gmodels, hamlet, HLMdiag, hnp, HSAUR, HSAUR2, HSAUR3, irtrees, KFAS, kulife, kyotil, languageR, lava, likelihoodAsy, lsmeans, lucid, MESS, metafor, MethComp, mice, mitml, multcomp, MuMIn, mztwinreg, NanoStringNorm, OpenMx, ordinal, pan, pez, phia, phmm, purge, R2admb, RcmdrPlugin.NMBU, SASmixed, spaMM, SPOT, texreg, TripleR, visreg
broom, car, censReg, crch, Ecdat, FinTS, FSA, fxregime, gmnl, IPSUR, meboot, multcomp, multiwayvcov, oglmx, pglm, pscl, psychomix, R2MLwiN, Rchoice, Rcmdr, RcmdrPlugin.IPSUR, sampleSelection, sandwich, sjPlot, strucchange, vcdExtra
DAAGbio, kaps, mFilter, peperr, reldist, spatstat, tmlenet
crawl, diversitree, ggvis, Lock5withR, mosaic, ProjectTemplate, rpdo, rtimes, statar, UsingR, wingui
assertr, backpipe, brr, checkmate, curl, ensurer, formula.tools, htmltab, icd9, lettercase, LW1949, mosaic, ngramrr, operator.tools, palettetown, pomp, rAmCharts, ReporteRs, rio, rmetasim, rpdo, setter, SocialMediaLab, soql, tidyjson, wikipediatrend
FDboost, gstat, IRISSeismic, maps, marmap, RGraphics, sos4R, spacetime, waterData
agridat, CompRandFld, dams, eeptools, eurostat, futureheatwaves, Geneland, ggplot2, ggthemes, knitrBootstrap, latticeExtra, MapGAM, maps, marmap, mosaic, move, oce, RAM, taRifx.geo, viridis
adegenet, agridat, anim.plots, aqfig, aqp, broom, dams, Ecfun, ecolMod, eeptools, ensembleBMA, ensembleMOS, FDboost, futureheatwaves, fuzzyjoin, Geneland, geoknife, GEOmap, GGally, ggiraph, ggplot2, ggthemes, gstat, HelpersMG, HistData, HSAUR3, iplots, IRISSeismic, knitrBootstrap, kriging, latticeExtra, leaflet, lga, MapGAM, maptools, marmap, MARSS, MazamaSpatialUtils, Mobilize, plotly, popgraph, R2BayesX, rainfreq, RcmdrPlugin.pointG, remote, rgbif, rgeos, RGraphics, rpanel, scrubr, sos4R, spacetime, spaMM, SpatioTemporal, SSsimple, taRifx.geo, threejs, tikzDevice, TSP, waterData, YplantQMC
ade4, adegraphics, adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, AMOEBA, aqp, automap, broom, CARBayes, ckanr, dismo, gamlss.spatial, GeoXp, ggplot2, graticule, GSIF, gstat, Guerry, HSAUR3, hydroTSM, knitrBootstrap, mapr, maps, mosaic, move, OpenStreetMap, osmplotr, PBSmapping, plotKML, prabclus, prettymapr, R2BayesX, rangemodelR, rgeos, RgoogleMaps, RGraphics, RObsDat, secr, sos4R, sp, spacetime, spatstat, spdep, speciesgeocodeR, spgwr, spoccutils, surveillance, taRifx.geo, TeachingDemos, TSP
BayesFactor, chipPCR, dpcR, GlobalOptions, htmltools, Rcmdr, R.rsp, shiny, whisker
AdaptiveSparsity, blockmodeling, car, CARBayes, cccd, ChoiceModelR, classGraph, corrgram, ddR, dils, discSurv, e1071, ESEA, extraTrees, eyetrackingR, fGarch, flacco, gap, gcbd, gear, gemtc, gmodels, hdi, HSAUR, HSAUR2, lava, lda, lfactors, loe, matrixpls, mefa, mlt.docreg, NCmisc, PAGI, pcalg, pergola, pnea, prc, rARPACK, rattle, RcppArmadillo, R.matlab, Rmpfr, rmumps, robustbase, robustvarComp, rstan, sfsmisc, solarius, SpaDES, spam, sprint, sptm, srvyr, stabledist, survey, SweaveListingUtils, tableone, tscount
catdata, Daim, fscaret, HSAUR2, HSAUR3, mlr, RBPcurve, spikeSlabGAM
ChemometricsWithR, ChemoSpec, clusterfly, clValid, HSAUR, HSAUR2, HSAUR3, LogConcDEAD, mixpack, MVA, qVarSel, RankAggreg, rebmix, REdaS, robustfa, rrcov, StatDA
BayesDA, bayesGDS, DOBAD, dyn, frontier, harvestr, IPMpack, lsmeans, pscl
BiodiversityR, caret, DiceEval, earth, ElemStatLearn, flacco, fscaret, GSIF, HandTill2001, mlr, subsemble, SuperLearner
bayesmeta, forestmodel, MAc, MAd, meta, metaSEM, mvmeta
agridat, BCEA, BiodiversityR, biomod2, caret, catdata, CompareCausalNetworks, ctmcmove, diseasemapping, dplyr, earth, fdapace, flexmix, ForeCA, freqparcoord, fscaret, ggplot2, ggvis, granova, HSAUR2, HSAUR3, kernDeepStackNet, latticeExtra, lazyData, LinRegInteractive, MatchIt, mediation, mlt.docreg, MuMIn, pscl, Rcmdr, RcmdrPlugin.IPSUR, rpanel, simex, soil.spec, taRifx.geo
BaBooN, hdnom, Hmisc, HSAUR3, Lambda4, lavaan.survey, medflex, midastouch, MissingDataGUI, mitml, NNLM, rattle, semTools
aoos, BBmisc, bnclassify, brotli, checkmate, dbscan, dendextend, dendextendRcpp, dplyr, fromo, gRain, gRbase, hashmap, icd9, JacobiEigen, Kmisc, lazyeval, matchingR, matrixStats, mistral, mkin, mvnfast, pander, PGRdup, prcbench, pROC, R6, RcppRoll, RcppZiggurat, schumaker, seismicRoll, storr, tibble, uniqueAtomMat, wrswoR
diversitree, icsw, metafor, msm, RandomFields, SPOT
hot.deck, lavaan.survey, medflex, mice, MImix, pan, smcfcs, survey
archetypes, boostr, Boruta, caret, caretEnsemble, clusterSim, Cubist, doParallel, doSNOW, e1071, evtree, flacco, flexmix, fscaret, FSelector, gamclass, gmum.r, h2o, HSAUR3, ipred, itree, klaR, mboost, mlearning, mlr, mlt.docreg, party, partykit, randomForestSRC, RBPcurve, RODM, RWeka, spikeSlabGAM, subsemble, SuperLearner, zooimage
AER, catdata, catspec, flexmix, McSpatial, mlogitBMA
BaylorEdPsych, FinTS, fromo, LambertW, pedometrics, PoisBinOrdNonNor
Lock5withR, mosaicData, NHANES, Sleuth2, Sleuth3
afex, benchmark, BiodiversityR, broom, doBy, DoseFinding, ETC, evtree, fastR, flexmix, ggplot2, HSAUR2, HSAUR3, languageR, mcprofile, metafor, microbenchmark, mlt, mlt.docreg, mratios, multcompView, MVA, psychotools, Rcmdr, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, Sleuth3
acopula, Anthropometry, aucm, bayesGDS, BNSP, bpkde, brms, ccaPP, CerioliOutlierDetection, chngpt, colorspace, coxme, densratio, DepthProc, DetMCD, DetR, disp2D, docopulae, ecp, FastHCS, FastPCS, FastRCS, fCopulae, flexmix, FNN, gconcord, glmlep, gmm, hda, HH, highfrequency, HSAUR, HSAUR2, HSAUR3, IPMpack, ipred, IPSUR, laGP, longclust, MCMCglmm, metafor, MfUSampler, mistat, MNM, MVA, mvnfast, NPC, OpenMx, partykit, pcalg, polyCub, prabclus, pscl, QICD, qrmtools, R2Cuba, RandomFields, RcmdrPlugin.EZR, RcmdrPlugin.NMBU, readGenalex, robustHD, robustvarComp, rodd, simcausal, simFrame, snht, SNPmaxsel, SparseGrid, sparseLTSEigen, sparseMVN, spTest, sptm, stochvol, strucchange, stsm, threeboost, tlemix, vcd
bio3d, HelpersMG, meteoForecast, oce, raster, RCMIP5, rnoaa
amen, broom, GGally, GGMselect, rDNA, RDS, RGraphics, RSiena, sand, sna, sspse, texreg
fscaret, mlr, NeuralNetTools, nnetpredint, plotmo, SPOT
AER, agridat, ANOM, car, CARBayes, contrast, Crossover, data.table, directlabels, effects, Epi, fda, ForeCA, FRESA.CAD, gap, ggfortify, ggplot2, gmodels, GSIF, hamlet, heplots, HLMdiag, ipw, kyotil, LinRegInteractive, maSAE, MASS, mice, mitml, mratios, multcomp, MuMIn, MVA, mvmeta, nCal, npmlreg, pander, pgirmess, phia, primer, psyphy, R2HTML, Rcmdr, RcmdrPlugin.IPSUR, regress, rggobi, RMark, robustvarComp, rsae, RxODE, scam, sfsmisc, simex, soil.spec, texreg, visreg
afex, CEGO, metafor, PortfolioAnalytics, RandomFields, SACOBRA, SPOT, SuperLearner
AER, AICcmodavg, aplore3, bayesMCClust, BiodiversityR, boostr, broom, caret, caretEnsemble, catdata, causaldrf, ChemometricsWithR, discSurv, DynTxRegime, e1071, fscaret, glmulti, GSIF, HandTill2001, hnp, lda, lsmeans, MASS, MatchIt, mboost, mi, mlDNA, mlogit, mlr, mlt, mlt.docreg, mnlogit, MRIaggr, MuMIn, nnetpredint, ordinal, pmml, psychomix, R2HTML, race, rattle, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, relimp, ROSE, seqHMM, subsemble, SuperLearner, VBmix, vcdExtra
BB, cccp, discSurv, diversitree, docopulae, DoseFinding, embryogrowth, emdbook, flacco, flexsurv, glmx, gof, highfrequency, KFKSDS, LambertW, lme4, metafor, mlr, msm, nlmrt, OpenMx, pso, psychomix, regsem, ROI, rpf, schumaker, sna, sparseHessianFD, stsm, stsm.class, surveillance, TMB, ucminf
ACDm, afex, bbmle, embryogrowth, languageR, lme4, nlmrt, phenology, RandomFields, regsem
MatchIt, matchMulti, rcbalance, rcbsubset, RcmdrPlugin.EZR
agridat, AICcmodavg, catdata, dotwhisker, effects, lsmeans, mlt.docreg, RVAideMemoire, sensR
caret, emil, fscaret, mlr, VHDClassification
ARTool, atsd, backShift, bcRep, clifro, ggthemes, mbbefd, NIPTeR, opencpu, RClone, reports, srvyr, syuzhet
betareg, caret, catdata, emil, evtree, fscaret, HSAUR, HSAUR2, mlr, ModelGood, ModelMap, pec, rattle, RGraphics, subsemble, SuperLearner, wsrf
doBy, effects, lme4, lmerTest, lsmeans, RcmdrPlugin.NMBU, SensMixed, sjPlot
catdata, fscaret, Grace, lda, mlr, peperr
ade4, ade4TkGUI, adegraphics, bmp, ICS, ProjectTemplate, readbitmap, RGraphics
AER, broom, censReg, data.table, frontier, lfe, meboot, micEcon, spacetime, systemfit, xtable
AMOEBA, Anthropometry, archdata, diveRsity, eurostat, geneListPie, hyperSpec, MSG, pdc, popKorn, RGraphics, RMark, rysgran, simba, smacof, spartan, SpatioTemporal, TrackReconstruction, vhica
agridat, baseline, caret, ChemoSpec, decisionSupport, EEM, fscaret, hyperSpec, mlr, PLSbiplot1, plsRbeta, RStoolbox, simrel
abd, afex, ARPobservation, bayesGDS, cpca, data.table, dendextend, dostats, eeptools, flacco, gcookbook, ggswissmaps, ggthemes, hillmakeR, HistData, hydrostats, installr, jsonlite, Kmisc, knitrBootstrap, Lahman, latex2exp, lulcc, metafor, MGLM, mvnfast, mvtboost, NlsyLinks, NNTbiomarker, NPC, ParamHelpers, pedometrics, plumbr, pomp, ProjectTemplate, psd, rangemodelR, rattle, rbefdata, rsvd, soil.spec, sparseMVN, textreg, TH.data, TimeProjection, trackeR, traits, trapezoid, vcdExtra, wingui
aroma.core, Cairo, exams, httr, mmand, openair, orloca, pdftools, RGraphics, RImageJROI, RImagePalette, ripa, RnavGraph, RNiftyReg, rsvg, rvest, SpaDES, TeachingDemos, webp
DiceEval, mlt.docreg, subsemble, SuperLearner, tmle.npvi
binom, caschrono, copula, FinTS, kza, multipol, Rmpfr
geostatsp, hsdar, MotilityLab, MRIaggr, signal
aplore3, bst, caret, caretEnsemble, Causata, fscaret, kernDeepStackNet, mldr, mlr, RcmdrPlugin.EZR, waffect
caret, dbstats, fscaret, isopam, qdap, sets
AER, agridat, AICcmodavg, catdata, glmulti, glmx, hnp, lsmeans, paleofire
bootnet, FAiR, FinTS, GSIF, pairwise, rattle, REdaS
EnvStats, IPSUR, mistat, RcmdrPlugin.IPSUR, RcmdrPlugin.qual
clue, crs, DoseFinding, fda, NMOF, popbio, PortfolioAnalytics, subsemble, SuperLearner, surveillance
covmat, highfrequency, PerformanceAnalytics, PortfolioAnalytics, RGraphics, SharpeR
AER, DAAG, dyn, gamclass, ggplot2, GLDreg, gsubfn, HSAUR3, latticeExtra, lava, mediation, np, PerformanceAnalytics, picante, randomizeR, Rz, simsem, survey
AICcmodavg, BCEA, BCEs0, ftsa, gap, iBUGS, LakeMetabolizer
AICcmodavg, BCEA, cdfquantreg, dclone, tsbugs
AICcmodavg, bcrm, classify, crmPack, dclone, emdbook, MethComp
CompRandFld, fractaldim, geostatsp, rpanel, spatstat
A3, BatchExperiments, BiodiversityR, boostr, Boruta, caret, caretEnsemble, ChemometricsWithR, COBRA, DAAG, DAAGxtras, Daim, discSurv, dismo, doMPI, dyn, e1071, emil, foreach, forestFloor, fscaret, GSIF, HSAUR, HSAUR2, HSAUR3, ICEbox, lulcc, mboost, mice, mlr, ModelGood, pander, pedometrics, pmml, purge, rattle, RStoolbox, subsemble, SuperLearner, TDMR, tmle.npvi, TunePareto, unbalanced, utiml, VHDClassification, visreg, wsrf, yaImpute
caret, flacco, fscaret, GeoXp, LICORS, nabor, spdep
asnipe, autopls, BiodiversityR, cartography, cycleRtools, Digiroo2, geosphere, glcm, hSDM, insol, maptools, palr, prettymapr, raincpc, rainfreq, RandomFields, RGraphics, rosm, SDMTools, soilDB, soilwater, solaR, spacetime, trackeR, VoxR
geoknife, MetaLandSim, meteoForecast, raster, solaR, spaMM, viridis
clusterCrit, doRNG, multitable, psd, Rclusterpp, Rcpp, RcppZiggurat
Anthropometry, aroma.affymetrix, berryFunctions, bodenmiller, bReeze, ChemoSpec, compendiumdb, condvis, dendsort, dplR, emil, expm, FRESA.CAD, gapmap, GGally, ggparallel, ggRandomForests, GMCM, GWmodel, idendr0, kitagawa, lulcc, mapmisc, maptools, mboost, McSpatial, metafolio, metricsgraphics, mlearning, Nippon, nodiv, oaPlots, osmplotr, paleofire, plotly, quanteda, RandomFields, randomForest, rattle, refund, RgoogleMaps, RGraphics, RObsDat, robustbase, RRF, rworldmap, separationplot, sinaplot, snpRF, sp, spacetime, SpaDES, spdep, sperich, survSNP, tbart, treescape
crmPack, cxxfunplus, devtools, hyperSpec, iemisc, inline, Rcereal, RcppParallel
CFC, crmPack, DepthProc, MfUSampler, RcppRoll
bio3d, boilerpipeR, cycleRtools, d3Network, Ecdat, EFDR, exams, fbRanks, fda, GSIF, h5, hsdar, knitr, markdown, mlr, mosaic, plotKML, rstan, rts, sorvi, switchr, sysfonts, trajectories, XML
babel, matrixStats, MPAgenomics, PSCBS, R.rsp
fuzzyjoin, httr, IalsaSynthesis, rpdo, RSocrata
ckanr, ezec, manifestoR, rattle, Rcmdr, RcmdrPlugin.EZR
data.table, demi, eeptools, GSIF, gsubfn, heplots, HistData, HiveR, htmlTable, IPSUR, nlmeU, pander, plotKML, plspm, popReconstruct, PracTools, ProjectTemplate, rattle, rggobi, ripa, rjstat, tis
ARPobservation, bodenmiller, causaldrf, codyn, data.table, flowr, ggswissmaps, ggthemes, heplots, Information, Kmisc, knitrBootstrap, Lahman, lda, ltbayes, Matrix.utils, metafolio, MGLM, mlxR, mosaicData, nullabor, oapackage, ParamHelpers, PDQutils, Perc, physiology, pomp, popEpi, psd, rangemodelR, refund, rfordummies, rgbif, rmetasim, robustbase, robustlmm, rpf, rtop, sensitivity, ss3sim, tableone, tourr, treecm, vcfR
autopls, bayesTFR, BiodiversityR, cartography, crawl, dismo, ecospat, geoknife, geostatsp, ggsn, graticule, Grid2Polygons, gstat, hydroTSM, ibeemd, intamap, intamapInteractive, ipdw, leaflet, leafletR, lgcp, mapmisc, meteoForecast, mptools, oce, psgp, raster, repijson, rgeos, RgoogleMaps, RGraphics, rgrass7, rnoaa, rollply, rsatscan, RStoolbox, RSurvey, rtop, rts, rworldmap, satellite, sdm, secr, seg, sharpshootR, soilDB, soil.spec, sos4R, sp, spacetime, SpaDES, spaMM, spatsurv, spcosa, spgrass6, trajectories, trip, UScensus2010, usdm
DiceKriging, DynTxRegime, fitdistrplus, icsw, Matching, MuFiCokriging, pnn, regsem, SPOT, Synth
adehabitatHR, adehabitatHS, BayesX, cartography, dismo, downscale, excursions, ggsn, gstat, indicspecies, mapmisc, maptools, polyCub, rangemodelR, raster, rgbif, rtop, sampSurf, secr, secrlinear, soilDB, sp, spacetime, SpatialPosition, surveillance, tbart, trajectories, vdmR
classifly, idendr0, rattle, RGraphics, ripa, tourrGui
AER, archdata, BCA, brewdata, ca, candisc, car, cda, CombMSC, COMMUNAL, compositions, DeducerExtras, DepthProc, DiceDesign, ei, EMbC, emdbook, EMMIXuskew, fdapace, FisHiCal, genridge, geometry, granova, heplots, HiDimMaxStable, HiveR, hsdar, hyperSpec, igraph, insol, IsotopeR, knitr, KODAMA, latentnet, lava, lfda, lle, LogConcDEAD, Luminescence, MCMCglmm, misc3d, modQR, mosaic, MRIaggr, MSG, orientlib, pamm, phangorn, phytools, pitchRx, polywog, ptinpoly, quantreg, rasterVis, Rcmdr, RcmdrPlugin.BCA, RGraphics, rpanel, RQuantLib, RSA, RSurvey, Rvcg, SACOBRA, sampSurf, seewave, sensitivity, sm, sna, soobench, spcosa, StereoMorph, stpp, TeachingDemos, TrackReconstruction, trajectories, tsDyn, unfoldr, vcdExtra, visreg, VoxR
GrammR, matlib, molaR, Rcmdr, rgl, spcosa
apt, fanc, LifeTables, ProgGUIinR, TopKLists
bcrm, blavaan, covafillr, dcmle, LEAPFrOG, lucid, MethComp, nCal, runjags
CommonJavaJars, dismo, ecospat, GSIF, JavaGD, partykit, rCMA, stream, svMisc, utiml, zooimage
GSIF, installr, mlr, plotKML, rsnps, sorvi, trajectories
BIOM.utils, exams, fbRanks, leaflet, matR, MGRASTer, switchr
bigGP, dclone, ergm.graphlets, geoCount, latentnet, snow
DATforDCEMRI, fda, geometry, hyperSpec, poweRlaw, SLOPE
copula, expm, gmp, QuACN, selectiveInference, stabledist
ConjointChecks, ergm, IndependenceTests, irace, npsf, OpenMx, P2C2M, parallelMap, PCIT, pls, plsVarSel, simsalapar, snow, snowfall, snowFT
bbmle, catdata, gap, Hmisc, languageR, ModelGood, pander, perturb, rankhazard, survAUC
dplyr, ProjectTemplate, quantmod, sqldf, TSdata, TSsql, twitteR, WhopGenome
ChemoSpec, depth, DepthProc, highfrequency, ICS, mlr, multcomp, PerformanceAnalytics, PLSbiplot1, PortfolioAnalytics, robcor, rsae, simsalapar, timeSeries
AER, dismo, mlr, rattle, recommenderlab, sand, SuperLearner, TDMR, unbalanced
biglm, BiodiversityR, drfit, ETLUtils, mitools, monitoR, ProjectTemplate, rattle, RcmdrPlugin.IPSUR, RcmdrPlugin.temis, REDCapR, rioja, RODM, rpart.utils, soilDB, sos, survey, TSdata
alm, aRxiv, autovarCore, broman, chromer, covmat, datadr, DescribeDisplay, devtools, df2json, discreteRV, ecd, geozoo, GGally, ggenealogy, gitlabr, h2o, h5, ifaTools, intergraph, jiebaR, knitrBootstrap, lineup, lint, mgarchBEKK, mizer, mtconnectR, nat.utils, nima, nlmeU, nscancor, nsprcomp, OpenMx, osmplotr, paleobioDB, pcIRT, photobiology, pnn, popEpi, PP, protoclass, pwrRasch, qtlcharts, Quandl, questionr, R4CouchDB, rappdirs, rAvis, rbhl, rbokeh, rbundler, rClinicalCodes, rclinicaltrials, rerddap, rex, rnbn, rnoaa, rpcdsearch, rpf, rsnps, RSocrata, rYoutheria, scholar, sdmvspecies, solr, spdynmod, spoccutils, tcR, TimeProjection, traits, trelliscope, urlshorteneR, vartors, wrswoR, WufooR, xoi
rase, seewave, sm, spatstat, stpp, VizOR
BatchExperiments, BiodiversityR, CALIBERrfimpute, caretEnsemble, catdata, caTools, ChemometricsWithR, classifly, DAAG, Daim, doParallel, doSNOW, DynTxRegime, e1071, emil, evtree, flacco, FRESA.CAD, fscaret, FSelector, ggdendro, ggplot2, GSIF, HandTill2001, HSAUR, HSAUR2, HSAUR3, klaR, languageR, lulcc, MatchIt, mboost, medflex, mlr, ModelGood, partykit, pec, plotmo, pmml, purge, R2HTML, rattle, ROSE, subsemble, SuperLearner, utiml
dplyr, ProjectTemplate, spacetime, sqldf, TSdata
AEDForecasting, AFLPsim, babar, babel, bayesGDS, brms, brotli, brr, bst, bujar, causaleffect, CryptRndTest, DiffusionRgqd, DiffusionRjgqd, easyVerification, ecp, enaR, EnsemblePCReg, future, FuzzyLP, FuzzyStatProb, GameTheory, gdm, gitlabr, haplo.stats, jsonlite, kdecopula, listenv, lqmm, madness, manifestoR, marmap, matrixStats, metafor, micromapST, mpath, MRH, opencpu, PAFit, plsRglm, PSCBS, Qtools, randomUniformForest, RAppArmor, R.devices, SetRank, sgd, spam, SRCS, ssfa, stagePop, tailDepFun, timma, WACS, WCE
DoseFinding, FRAPO, LambertW, markovchain, mirt, regsem
biglm, caroline, chunked, DBI, dplyr, ETLUtils, freqweights, nutshell, nutshell.bbdb, oai, oce, pitchRx, ProjectTemplate, quantmod, rgrass7, RObsDat, rvertnet, scrime, storr, stream, survey, taRifx, trackeR, TSdata, TSsql, twitteR, vegdata
aop, aucm, bbmle, cccp, ChainLadder, chngpt, classyfire, climdex.pcic, clusterCrit, cmaes, COMMUNAL, CompGLM, Crossover, DatABEL, doRNG, doSNOW, emoa, fArma, fAsianOptions, fAssets, fastdigest, fBasics, fBonds, fCopulae, FeatureHashing, fExoticOptions, fExtremes, fGarch, fImport, fingerprint, fMultivar, fNonlinear, fOptions, fRegression, fTrading, fUnitRoots, futile.matrix, gbm, gdata, glarma, gldist, gMCP, HistogramTools, hwriterPlus, iterators, krm, kyotil, lambda.r, lhs, lisp, logitnorm, matrixpls, mcr, minval, mutoss, NanoStringNorm, nCal, ncdf4.helpers, NMF, NMOF, NormalLaplace, nplr, PCICt, pdmod, Peptides, pkgmaker, prc, protViz, qmrparser, Rblpapi, rcdk, Rclusterpp, Rcpp, RcppAnnoy, RcppArmadillo, RcppClassic, RcppClassicExamples, RcppEigen, RcppExamples, RcppGSL, RcppOctave, RcppParallel, RcppRedis, RecordLinkage, RMongo, rmongodb, rngtools, RobAStBase, RProtoBuf, RQuantLib, rredis, RSofia, rstan, rstpm2, simcausal, simTool, sp23design, spatialprobit, spcosa, sprint, sptm, stabledist, tawny, tawny.types, timeDate, timeSeries, TKF, tmlenet, TTR, vacem, WeightedCluster, XLConnect, Xmisc
babel, ChemoSpec, hashFunction, listenv, oce
bayesTFR, graticule, paleofire, rworldxtra, scrubr
ANOM, car, contrast, dyn, dynlm, Ecdat, FinTS, highfrequency, HSAUR2, HSAUR3, lmtest, mlt.docreg, partykit, pscl, Rchoice, SharpeR
chron, disclapmix, GGally, gsDesign, igraph, likeLTD, multitable, NlsyLinks, R6, RcmdrPlugin.MA, RImagePalette, rsvd, rtimes, SACOBRA, SciencesPo, simmer, soil.spec, solarius, sparseHessianFD, surveillance, tis, vcfR, viridis, Wats, zoo
AER, brewdata, CompRandFld, copula, deSolve, diffEq, ecolMod, funcy, geoR, GHQp, HDMD, HSAUR, HSAUR2, HSAUR3, hydroPSO, IPSUR, klaR, LPCM, matR, mco, mopsocd, MotilityLab, MVA, ndtv, orientlib, RGraphics, RODM, RSNNS, sandwich, TrackReconstruction, tsDyn, tseriesChaos
aspect, Ecdat, FAiR, MVA, psych, Rcmdr, semPLS, systemfit
cubfits, phangorn, rnaseqWrapper, SimRAD, TKF, vhica
ChemoSpec, corrplot, dendsort, disclapmix, flexclust
ChemometricsWithR, copula, expm, longmemo, qrmtools, Rmpfr, robcor, robustbase, stabledist
CARBayes, Guerry, mapplots, R2BayesX, taRifx.geo
ahp, archivist, backpipe, benchmarkme, benchmarkmeData, compareGroups, condvis, covr, d3heatmap, diffr, DT, embryogrowth, EpiModel, fanplot, formatR, geneSLOPE, ggiraph, googleAuthR, googleVis, ImportExport, koRpus, LDAvis, leaflet, likert, metricsgraphics, mirt, mlxR, pitchRx, plotly, qrage, rAmCharts, rangeMapper, RGA, rivr, rmarkdown, RQuantLib, RxODE, sadists, SDR, searchConsoleR, seasonal, shotGroups, tabplot, tigerstats, timeline, webshot
caroline, EDR, npsm, rpanel, spatstat, tsDyn
asnipe, blockmodeling, ChemoSpec, ergm, GGally, haplotypes, HiveR, MSG, network, rDNA, sand, tsna
koRpus, movMF, qdap, rattle, RcmdrPlugin.temis, stm, textreg, tm, topicmodels
COBRA, CoxBoost, GAMBoost, geoCount, gyriq, HiDimMaxStable, minPtest, mlegp, mlgt, MPAgenomics, MPTinR, MRIaggr, OpenMx, plotKML, regsem, rgp, TunePareto
ade4, agridat, bayesTFR, BiodiversityR, broom, crawl, eeptools, EnvStats, gamclass, Guerry, HistData, HSAUR3, hSDM, hyperSpec, indicspecies, installr, itsadug, lctools, leafletR, maps, mosaic, npsp, osmar, paleofire, pedometrics, playwith, R2BayesX, rangemodelR, rase, RcmdrPlugin.qual, remote, rgbif, RgoogleMaps, RGraphics, rpanel, rsatscan, scrubr, SDMTools, smerc, solaR, sperrorest, TSP, VoxR
CompRandFld, gear, gptk, RandomFields, spdep
car, CollocInfer, e1071, LiblineaR, LiblineaR.ACF, R.matlab, sna, sprint
BiodiversityR, fBasics, fMultivar, spatstat, taRifx.geo
adehabitat, expp, GSIF, ipdw, maptools, McSpatial, plotKML, soil.spec
ade4, adegraphics, BayesX, constrainedKriging, diseasemapping, gamlss.spatial, glmmBUGS, Guerry, McSpatial, prabclus, R2BayesX, rangemodelR, seg, sharpshootR, spgwr, starma, surveillance, xtable
ade4, adegenet, adegraphics, BCEA, BiodiversityR, plgp, surveillance
caRpools, eurostat, genie, qdap, readr, rebus.base, rvest, stylo, swirl, tm.plugin.alceste
ClimClass, eeptools, ggenealogy, ggmap, GSIF, MARSS, optparse, plotROC, ProjectTemplate, rattle, rex, rfordummies, SoundexBR, taRifx, tikzDevice, wingui, wsrf
AER, bcp, betareg, dynlm, ggfortify, glogis, lmtest, meboot, partykit, psychotree, sandwich, zoo
BIFIEsurvey, car, ipw, logmult, PracTools, Qtools, RDS, SDaA
agridat, aplore3, ascii, BB, bnnSurvival, boot, bpcp, broom, BSquare, bujar, CALIBERrfimpute, car, catspec, choplump, clinfun, DAAG, dawai, discSurv, dlnm, dnet, doBy, emil, epade, epifit, exactRankTests, FastKM, flexmix, forestmodel, FRESA.CAD, gamboostLSS, gap, genSurv, GGally, ggfortify, glmnet, glmulti, gof, Greg, grImport, HSAUR, HSAUR2, HSAUR3, HydeNet, ISwR, itree, kyotil, lava, lmtest, LogrankA, lsmeans, lss, MASS, maxstat, mc2d, mediation, metafor, MetaQC, mgcv, mhurdle, mi, mistat, mixor, mlt, mlt.docreg, MuMIn, ncvreg, netdiffuseR, npsm, nutshell, pander, pensim, purge, quantreg, qwraps2, R2HTML, randomForestSRC, ranger, rattle, reporttools, rpart, RVAideMemoire, sandwich, SMIR, srvyr, support.BWS, support.CEs, survey, SweaveListingUtils, tableone, texreg, timeROC, truncreg, visreg, xtable, ztable
arrayhelpers, distr, gsubfn, likeLTD, logging, sqldf, svMisc
binomen, mapr, rbison, rnoaa, spocc, spoccutils
HH, IPSUR, metafolio, RGraphics, tourr, tourrGui
animation, formatR, highr, knitr, leaflet, NlsyLinks
CDNmoney, tframePlus, TSdata, TSdbi, TSfame, TSmisc, TSMySQL, TSodbc, TSPostgreSQL, TSsdmx, TSsql, TSSQLite
bujar, coin, Daim, flexsurv, HSAUR, HSAUR2, HSAUR3, ipred, maxstat, mboost, mlr, mlt, mlt.docreg, partDSA, party, partykit, stabs
ARTool, causaldrf, crawl, hdr, htmltab, idbr, JacobiEigen, mosaic, qualvar, radarchart, rollply, rpdo, simmer, wrswoR, wrswoR.benchmark
FinancialInstrument, ggfortify, gmm, Quandl, quantmod, SharpeR, TSmisc, TSMySQL, xts, zoo
Ecdat, tframePlus, TSdbi, TSmisc, TSsql, xts, zoo
adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, aplpack, fmri, LogConcDEAD, misc3d, mritc, RandomFields, RcmdrPlugin.SM, RcmdrPlugin.TeachingDemos, relax, ripa, rpanel, sm, SpaDES, spatstat, sudoku, TeachingDemos
HSAUR2, HSAUR3, koRpus, lsa, movMF, PRISMA, quanteda, rattle, stm, tau, toaster, wordcloud
COBRA, ggdendro, optpart, ROSE, TunePareto
adegenet, geometry, hyperSpec, latticeExtra, quantreg, RSurvey
AER, copula, dyn, FinTS, ggfortify, mFilter, mistat, pander, portes, RTDE, strucchange, TSdata, TSdbi, TSfame, TSMySQL, TSodbc, TSPostgreSQL, TSsql, TSSQLite, xts, zoo
abd, agridat, archetypes, ca, coin, colorspace, fastR, HSAUR, HSAUR2, HSAUR3, IPSUR, Lahman, mosaic, movMF, party, partykit, pscl, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, RcmdrPlugin.qual, REdaS, RGraphics, Rz, tableplot, UsingR, xgboost
bcp, betapart, codep, eHOF, enveomics.R, loe, mefa, multitable, permute, phylotools, primer, RnavGraph, sads, spaa, taxize, vegdata, WeightedCluster, yaImpute
catdata, copula, cubfits, discSurv, ExtDist, hnp, isdals, medflex, mediation, mlt.docreg, mnlogit, modeest, partDSA, Sofi, vcdExtra, VGAMdata
beanplot, denstrip, hydroPSO, sand, vipor
compareGroups, Deducer, JGR, readGenalex, rfordummies, userfriendlyscience
compareGroups, diveRsity, dynBiplotGUI, OpenRepGrid, ProjectTemplate, repmis
arules, bio3d, bReeze, ctv, dcemriS4, diseasemapping, dismo, Ecdat, ecospat, fbRanks, FinancialInstrument, frbs, gemtc, GSIF, HelpersMG, htmlTable, icd9, installr, io, knitr, kulife, logging, mcr, mlr, Mobilize, nat, Ohmage, oro.nifti, pacman, partykit, quanteda, quantmod, R2SWF, randomForestSRC, rattle, RCurl, Renext, rgeos, RGraphics, RObsDat, rplos, RSurvey, RUnit, semPLS, spartan, SubpathwayLNCE, svgPanZoom, svUnit, tm, tm.plugin.dc, topicmodels, trackeR
ameco, ckanr, gesis, httr, rscopus, svglite, svgPanZoom
afex, ascii, attribrisk, AutoModel, BayesFactor, bestglm, blockTools, boostr, CALIBERrfimpute, caper, caschrono, chipPCR, CNVassoc, coin, dataRetrieval, dpcR, drLumi, e1071, EGRET, EloChoice, evtree, ExtDist, fbRanks, geoknife, gets, hamlet, hdm, HiveR, htmlTable, hwriterPlus, icarus, icd9, itsadug, JoSAE, knitrBootstrap, kyotil, MARSS, mcmc, micEconCES, mixedMem, MPSEM, multcomp, nFactors, NlsyLinks, NMF, NPC, ordinal, pedometrics, phangorn, PharmacoGx, PMCMR, qtutils, randomLCA, RankAggreg, rbamtools, rcdk, robustbase, RSiena, rtf, sadists, SBSA, SeqFeatR, SharpeR, SII, soiltexture, sos4R, spdep, sqlutils, StMoMo, taRifx, textreg, TraMineR, TriMatch, tscount, waterData
crawl, data.table, FatTailsR, FRAPO, ggfortify, gstat, hydroPSO, parma, Rblpapi, SharpeR, sos4R, surveillance, tframePlus, timeSeries, tolBasis, trajectories, TSdata, ustyc, zoo
atsd, broom, copula, data.table, ETLUtils, FatTailsR, fda, FRAPO, ggfortify, GGIR, glarma, gsubfn, latticeExtra, lava, meboot, mondate, pander, playwith, pscl, quantreg, Rblpapi, RcppRoll, RQuantLib, tframePlus, tolBasis, TScompare, TSdata, TSdbi, TSfame, TSMySQL, TSodbc, TSPostgreSQL, TSSQLite, UsingR, XLConnect, xtable
htmltools, kimisc, networkD3, patchSynctex, threejs
dygraphs, htmlwidgets, JMbayes, networkD3, PivotalR, rbokeh, rhandsontable, rpivotTable, scatterD3, threejs
ggplot2, ggtern, glmmBUGS, Rgnuplot, SemiParBIVProbit