Uses a modification of the published FORTRAN code in "A Computer Program for Generating Variance Dispersion Graphs" by G. Vining, Journal of Quality Technology, Vol. 25 No. 1 January 1993, to produce variance dispersion graphs. Also produces fraction of design space plots, and contains data frames for several minimal run response surface designs.
Functions for creating variance dispersion graphs, fraction of design space plots, and contour plots of scaled prediction variances for second-order response surface designs in spherical and cuboidal regions. Also, some standard response surface designs can be generated.
An extension to the 'testthat' package that makes it easy
    to add graphical unit tests. It provides a Shiny application to
    manage the test cases.
This provides web-based visual data-mining tools by adding
    interactive functions to 'ggplot2' graphics. Brushing and linking between the
    multiple plots is one of the main feature of this package. Currently scatter
    plots, histograms, parallel coordinate plots and choropleth maps are supported.
Provides statistical methods for the design and analysis of a calibration study, which aims for calibrating measurements using two different methods. The package includes sample size calculation, sample selection,  regression analysis with error-in measurements and change-point regression. The method is described in Tian, Durazo-Arvizu, Myers, et al. (2014) <DOI:10.1002/sim.6235>.
A package for applying affine and similarity transformations on vector spatial data (sp objects). Transformations can be defined from control points or directly from parameters. If redundant control points are provided Least Squares is applied allowing to obtain residuals and RMSE.
Automates set operations (i.e., comparisons of overlap) between multiple vectors.
    It also contains a function for automating reporting in 'RMarkdown', by generating markdown output for easy analysis, as well as an 'RMarkdown' template for use with 'RStudio'.
The base 'sets' tools follow the algebraic definition
 that each element of a set must be unique. 
 Since it's often helpful to compare all elements of two vectors,
 this toolset treats every element as unique for counting purposes.
 For ease of use, all functions in vecsets have an argument
 'multiple' which, when set to FALSE,
 reverts them to the base::set tools functionality.
A 2D statistical analysis is performed, both numerical and graphical, of a set of vectors. Since a vector has two components (module and azimuth) vector analysis is performed in three stages: modules are analyzed by means of linear statistics, azimuths are analyzed by circular statistics, and the joint analysis of modules and azimuths is done using density maps that allow detecting another distribution properties (i.e. anisotropy) and outliers. Tests and circular statistic parameters have associated a full range of graphing: histograms, maps of distributions, point maps, vector maps, density maps, distribution modules and azimuths.
This package performs a 3D statistical analysis, both numerical and graphical, of a set of vectors. Since a vector has three components (a module and two angles) vectorial analysis is performed in two stages: modules are analyzed by means of linear statistics and orientations are analyzed by spherical statistics. Tests and spherical statistic parameters are accompanied by a graphs as: density maps, distribution modules and angles. The tests, spherical statistic parameters and graphs allow us detecting another distribution properties (i.e. anisotropy) and outliers.
The 'Vega-Lite' 'JavaScript' framework provides a higher-level grammar
    for visual analysis, akin to 'ggplot' or 'Tableau', that generates complete 'Vega'
    specifications. Functions exist which enable building a valid 'spec' from scratch
    or importing a previously created 'spec' file. Functions also exist to export 'spec'
    files and to generate code which will enable plots to be embedded in properly
    configured web pages. The default behavior is to generate an 'htmlwidget'.
Ordination methods, diversity analysis and other
  functions for community and vegetation ecologists.
Static and dynamic 3D plots to be used with ordination
    results and in diversity analysis, especially with the vegan package.
Contains functions used to perform fuzzy clustering of vegetation data under different models. It also includes functions to measure community dissimilarity on the basis of structure and composition.
Handling of vegetation data from different sources (
	Turboveg <http://www.synbiosys.alterra.nl/turboveg/>; 
	the German national repository <http://www.vegetweb.de> and others. 
    Taxonomic harmonization (given appropriate taxonomic lists,
    e.g. the German taxonomic standard list "GermanSL", <http://germansl.infinitenature.org>).
This package computes diversity for community data sets
        using the methods outlined by Jost (2006, 2007). While there
        are differing opinions on the ideal way to calculate diversity
        (e.g. Magurran 2004), this method offers the advantage of
        providing diversity numbers equivalents, independent alpha and
        beta diversities, and the ability to incorporate 'order' (q) as
        a continuous measure of the importance of rare species in the
        metrics. The functions provided in this package largely
        correspond with the equations offered by Jost in the cited
        papers. The package computes alpha diversities, beta
        diversities, gamma diversities, and similarity indices.
        Confidence intervals for diversity measures are calculated
        using a bootstrap method described by Chao et al. (2008).  For
        datasets with many samples (sites, plots), sim.table creates
        tables of all pairwise comparisons possible, and for grouped
        samples sim.groups calculates pairwise combinations of within-
        and between-group comparisons.
Import and handling data from vegetation-plot databases, especially
    data stored in 'Turboveg' (<https://www.synbiosys.alterra.nl/turboveg>).
    Also import/export routines for exchange of data with 'Juice'
    (<http://www.sci.muni.cz/botany/juice>) are implemented.
Elaboration of vehicular emissions inventories,
    consists the three stages, pre-processing activity data, processing
    or estimating the emissions and post-processing of emissions in
    maps and databases.
Functions for downloading, reshaping, culling, cleaning, and analyzing fossil data from the Paleobiology Database <https://paleobiodb.org>.
C++ accelerated raster manipulation and extraction.
A set of functions for generating HTML to
    embed hosted video in your R Markdown documents or Shiny applications.
Draws and displays Venn diagrams up to 7 sets, and any Boolean union of set intersections.
A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Calculates and displays Venn and Euler Diagrams
Provides variable selection and estimation routines for models
    stratified based on binary factors.
Calculate and plot Venn diagrams in 2D and 3D.
Utilities for verifying discrete, continuous and probabilistic forecasts, and forecasts expressed as parametric distributions are included.
Installs specified versions of R packages hosted on CRAN and
    provides functions to list available versions and the versions of currently
    installed packages. These tools can be used to help make R projects and
    packages more reproducible. 'versions' fits in the narrow gap between
    the 'devtools' install_version() function and the 'checkpoint' package.
    devtools::install_version() installs a stated package version from source files
    stored on the CRAN archives. However CRAN does not store binary versions of
    packages so Windows users need to have RTools installed and Windows and OSX
    users get longer installation times. 'checkpoint' uses the Revolution Analytics
    MRAN server to install packages (from source or binary) as they were available
    on a given date. It also provides a helpful interface to detect the packages
    in use in a directory and install all of those packages for a given date.
    'checkpoint' doesn't provide install.packages-like functionality however, and
    that's what 'versions' aims to do, by querying MRAN. As MRAN only goes back to
    2014-09-17, 'versions' can't install packages archived before this date.
When given a description of a polyhedral set by a system of linear inequalities Ax <= b, produce the list of the vertices of the set.
Creates Vertex Similarity matrix of an undirected graph based
  on the method stated by E. A. Leicht, Petter Holme, AND M. E. J. Newman in
  their paper <DOI:10.1103/PhysRevE.73.026120>.
Permits to apply the 'Vertex Sort' algorithm (Jothi et al. (2009) <10.1038/msb.2009.52>) to a graph in order to elucidate its hierarchical structure. It also allows graphic visualization of the sorted graph by exporting the results to a cytoscape friendly format. Moreover, it offers five different algorithms of graph randomization: 1) Randomize a graph with preserving node degrees, 2) with preserving similar node degrees, 3) without preserving node degrees, 4) with preserving node in-degrees and 5) with preserving node out-degrees.
Multi-precission library that allows to store and manage arbitrarily big integers without
    loss of precision. It includes a large list of tools to work with them, like:
      -Arithmetic and logic operators
      -Modular-arithmetic operators
      -Computer Number Theory utilities
      -Probabilistic primality tests
      -Factorization algorithms
      -Radom generators of diferent kinds of integers.
Simple functions for calculating the image gradient, image hessian, volume ratio filter, and Frangi vesselness filter of 3-dimensional volumes.
Integrated data management library that offers a variety of tools concerning the loading and manipulation of environmental data available from different Venezuelan governmental sources. Facilities are provided to plot temporal and spatial data as well as understand the health of a collection of meteorological data.
Declarative template-based framework for verifying that objects
  meet structural requirements, and auto-composing error messages when they do
  not.
R Codes and Datasets for Duchateau, L. and Janssen, P. and Rowlands, G. J. (1998). Linear Mixed Models. An Introduction with applications in Veterinary Research. International Livestock Research Institute (ISBN 92-9146-038-9).
Computation the value of one of two uniformly 
    distributed marginals if the copula probability value is known
    and the value of the second marginal is also known.
    Computation and plotting corresponding cumulative
    distribution function or survival function.
    The numerical definition of a common area limited by lines
    of the cumulative distribution function and survival function.
    Approximate quantification of the probability of this area.
An implementation of about 6 major classes of
    statistical regression models. At the heart of it are the
    vector generalized linear and additive model (VGLM/VGAM)
    classes, and the book "Vector Generalized Linear and
    Additive Models: With an Implementation in R" (Yee, 2015)
    <DOI:10.1007/978-1-4939-2818-7>
    gives details of the statistical framework and VGAM package.
    Currently only fixed-effects models are implemented,
    i.e., no random-effects models. Many (150+) models and
    distributions are estimated by maximum likelihood estimation
    (MLE) or penalized MLE, using Fisher scoring. VGLMs can be
    loosely thought of as multivariate GLMs. VGAMs are data-driven
    VGLMs (i.e., with smoothing). The other classes are RR-VGLMs
    (reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs,
    RCIMs (row-column interaction models)---these classes perform
    constrained and unconstrained quadratic ordination (CQO/UQO)
    models in ecology, as well as constrained additive ordination
    (CAO). Note that these functions are subject to change;
    see the NEWS and ChangeLog files for latest changes.
Data sets to accompany the VGAM package and
	the book "Vector Generalized Linear and
	Additive Models: With an Implementation in R" (Yee, 2015)
	<DOI:10.1007/978-1-4939-2818-7>.
	These are used to illustrate vector generalized
	linear and additive models (VGLMs/VGAMs), and associated models
	(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Row-Column
	Interaction Models, and constrained and unconstrained ordination
	models in ecology).
This package provides an implementation of Linear discriminant analysis and quadratic discriminant analysis that works fine in very high dimension (when there are many more variables than observations).
The "Vertical and Horizontal Inheritance Consistence Analysis" method is described in the following publication: "VHICA: a new method to discriminate between vertical and horizontal transposon transfer: application to the mariner family within Drosophila" by G. Wallau. et al. (2016) <DOI:10.1093/molbev/msv341>. The purpose of the method is to detect horizontal transfers of transposable elements, by contrasting the divergence of transposable element sequences with that of regular genes.
It will take the vectors of motion for two videos
	(coming from a variant of shotdetect code allowing to store
	detailed motion vectors in JSON format, for instance) and it
	will look for comparing taking out the common chunk.
	Then, provided you have some image's hashes it will compare
	their signature in order to make up the decision about
	chunk similarity of two video files.
        ShotDetect is a free software which detects shots and scenes
        from a video (http://johmathe.name/shotdetect.html).
Converts Vietnam's provinces' names and ID
    across different formats. Handles diacritics and different spellings.
This package implements a fast regression algorithm for
        building linear model for large data as defined in the paper
        "VIF-Regression: A Fast Regression Algorithm for Large Data
        (2011), Journal of the American Statistical Association, Vol.
        106, No. 493: 232-247" by Dongyu Lin, Dean P. Foster, and Lyle
        H. Ungar.
Contains a function to support the following paper:
    Xiaoping Shi, Xiang-Sheng Wang, Dongwei Wei, Yuehua Wu (2016), <DOI:10.1007/s00180-015-0587-5>,
    A sequential multiple change-point detection procedure via VIF regression,
    Computational Statistics, 31(2): 671-691.
Conducts linear regression using variational Bayesian inference, particularly optimized for genome-wide association mapping and whole-genome prediction which use a number of DNA markers as the explanatory variables. Provides seven regression models which select the important variables (i.e., the variables related to response variables) among the given explanatory variables in different ways (i.e., model structures).
New tools for the visualization of missing and/or imputed values
    are introduced, which can be used for exploring the data and the structure of
    the missing and/or imputed values. Depending on this structure of the missing
    values, the corresponding methods may help to identify the mechanism generating
    the missing values and allows to explore the data including missing values.
    In addition, the quality of imputation can be visually explored using various
    univariate, bivariate, multiple and multivariate plot methods. A graphical user
    interface available in the separate package VIMGUI allows an easy handling of
    the implemented plot methods.
A graphical user interface for the methods implemented in the
    package VIM. It allows an easy handling of the
    implemented plot and imputation methods.
Provides tools for the statistical analysis of vine copula models.
    The package includes tools for parameter estimation, model selection,
    simulation, goodness-of-fit tests, and visualization. Tools for estimation,
    selection and exploratory data analysis of bivariate copula models are also
    provided.
Implementation of the vine graphical model for building
    high-dimensional probability distributions as a factorization of
    bivariate copulas and marginal density functions. This package
    provides S4 classes for vines (C-vines and D-vines) and methods
    for inference, goodness-of-fit tests, density/distribution
    function evaluation, and simulation.
A lattice violin-plot is overlayed with the arithmetic
        mean and standard deviation.
A violin plot is a combination of a box plot and a kernel density plot.
viopoints draws one dimensional scatter plots with jitter
        using kernel density estimates in a similar way to violin
        plots.
Generate a violin point plot, a combination of a violin/histogram
    plot and a scatter plot by offsetting points within a category based on their
    density using quasirandom noise.
Port of the new 'matplotlib' color maps ('viridis' - the default
    -, 'magma', 'plasma' and 'inferno') to 'R'. 'matplotlib' <http://matplotlib.org/
    > is a popular plotting library for 'python'. These color maps are designed
    in such a way that they will analytically be perfectly perceptually-uniform,
    both in regular form and also when converted to black-and-white. They are
    also designed to be perceived by readers with the most common form of color
    blindness.
Port of the new 'matplotlib' color maps ('viridis' - the default
    -, 'magma', 'plasma' and 'inferno') to 'R'. 'matplotlib' <http://matplotlib.org/
    > is a popular plotting library for 'python'. These color maps are designed
    in such a way that they will analytically be perfectly perceptually-uniform,
    both in regular form and also when converted to black-and-white. They are
    also designed to be perceived by readers with the most common form of color
    blindness. This is the 'lite' version of the more complete 'viridis' package
    that can be found at <https://cran.r-project.org/package=viridis>.
Provides a framework for generating virtual species distributions,
    a procedure increasingly used in ecology to improve species distribution
    models. This package integrates the existing methodological approaches with the
    objective of generating virtual species distributions with increased ecological
    realism.
Use VirusTotal, a Google service that analyzes files and URLs 
    for viruses, worms, trojans etc., provides category of the content hosted by a 
    domain from a variety of prominent services, provides passive DNS information,
    among other things. See <http://www.virustotal.com> for more information.
Create preliminary exploratory data visualisations of an entire 
  dataset to identify problems or unexpected features using 'ggplot2'.
A graphical tool designed to visualize and to give an overview of behavioural observations realized on individuals or groups. Visualization of raw data during experimental observations of the realization of a procedure. It graphically presents an overview of individuals and group actions usually acquired from timestamps during video recorded sessions. Options of the package allow adding graphical information as statistical indicators (mean, standard deviation, quantile or statistical test) but also for each action green or black zones providing visual information about the accuracy of the realized actions.
Provides an R interface to the 'vis.js' JavaScript charting
    library. It allows an interactive visualization of networks.
Provides a convenient interface for constructing plots to visualize the fit of regression models arising from a wide variety of models in R ('lm', 'glm', 'coxph', 'rlm', 'gam', 'locfit', 'lmer', 'randomForest', etc.)
Create timelines or Gantt charts, offline and interactive, that are usable in the 'RStudio' viewer pane, in 'R Markdown' documents and in 'Shiny' apps using 'plotly.js', a high-level, declarative charting library (see <https://plot.ly/javascript>). Hover the mouse pointer over a point or task to show details or drag a rectangle to zoom in. Timelines (and the data behind them) can be manipulated using 'plotly_build()' or, once uploaded to a 'plotly' account, viewed and modified in a web browser.
A collection of tools for analyzing the field of vision. It provides a framework for development and use of innovative methods for visualization, statistical analysis, and clinical interpretation of visual-field loss and its change over time. It is intended to be a tool for collaborative research.
Graphs the pdf or pmf and highlights what area or probability is
    present in user defined locations. Visualize is able to provide lower tail,
    bounded, upper tail, and two tail calculations. Supports strict and equal
    to inequalities.  Also provided on the graph is the mean and variance of
    the distribution.
Displays multivariate data, based on Sammon's nonlinear mapping.
Implements the novel testing approach by Janitza et al.(2015)
    <http://nbn-resolving.de/urn/resolver.pl?urn=nbn:de:bvb:19-epub-25587-4>
    for the permutation variable importance measure in a random forest and the
    PIMP-algorithm by Altmann et al.(2010) <doi:10.1093/bioinformatics/btq134>.
    Janitza et al.(2015) <http://nbn-resolving.de/urn/resolver.pl?urn=nbn:de:bvb:19-epub-25587-4>
    do not use the "standard" permutation variable
    importance but the cross-validated permutation variable
    importance for the novel test approach. The cross-validated
    permutation variable importance is not based on the out-of-bag
    observations but uses a similar strategy which is inspired by
    the cross-validation procedure. The novel test approach can be
    applied for classification trees as well as for regression
    trees. However, the use of the novel testing approach has not
    been tested for regression trees so far, so this routine is
    meant for the expert user only and its current state is rather
    experimental.
Provides fitting routines for four versions of the
        Vitality family of mortality models.
Provides individual- and aggregate-level graphical depictions of
    patterns of treatment and response in patient registries, and a graphical
    tool for examining potential for confounding in analyses of observational
    data.
Provides an interface to the VK API <https://vk.com/dev/methods>.
      VK <https://vk.com/> is the largest European online social networking
      service, based in Russia.
Using frequency matrices, very low frequency variants (VLFs) are assessed for amino acid and nucleotide sequences.  The VLFs are then compared to see if they occur in only one member of a species, singleton VLFs, or if they occur in multiple members of a species, shared VLFs.  The amino acid and nucleotide VLFs are then compared to see if they are concordant with one another.  Amino acid VLFs are also assessed to determine if they lead to a change in amino acid residue type, and potential changes to protein structures.
Functions, Classes & Methods for estimation, prediction, and
  simulation (bootstrap) of Variable Length Markov Chain ('VLMC') Models.
The tools you need to process, analyze, combine, integrate and
    plot your fishery data: the georeferenced dataset from the Vessel Monitoring
    System (VMS), from the Automatic Information System (AIS) or other tracking
    devices, as well as the catches or landings dataset from the Logbook or Vessel
    Register. Package 'vmsbase' is equipped by Viewer Tools to visually inspect data
    at different steps of the analyses and to produce effective outputs for reports
    and scientific publications. Viewers are conceived to show the VMS pings, to
    visualize single or multiple tracks for fishing vessels, or to represent the VMS
    data on Google Viewer, so that the user can produce easy to interpret and more
    realistic visualization of both fishing effort and effort behaviour. Package
    'vmsbase' represents the implementation of several R routines which have been
    developed by the "Tor Vergata" University of Rome Team involved in the Italian
    National Program for the Data Collection Framework for Fisheries Data between
    2009-2012.
Provide tools for finding multiple-objective optimal designs for
         estimating the shape of dose-response, the ED50 (the dose producing an effect
         midway between the expected responses at the extreme doses) and the MED (the
         minimum effective dose level) for the 2,3,4-parameter logistic models and for
         evaluating its efficiencies for the three objectives. The acronym VNM stands
         for V-algorithm using Newton Raphson method to search multiple-objective
         optimal design.
Create adjacency matrices of vocalisation graphs from
  dataframes containing sequences of speech and silence intervals,
  transforming these matrices into Markov diagrams, and generating
  datasets for classification of these diagrams by 'flattening' them
  and adding global properties (functionals) etc.  Vocalisation
  diagrams date back to early work in psychiatry (Jaffe and Feldstein,
  1970) and social psychology (Dabbs and Ruback, 1987) but have only
  recently been employed as a data representation method for machine
  learning tasks including meeting segmentation (Luz, 2012)
  <doi:10.1145/2328967.2328970> and classification (Luz,
  2013) <doi:10.1145/2522848.2533788>.
Facilitate Post Vortex Simulation Analysis by offering
    tools to collate multiple Vortex (v10) output files into one R object, and
    analyse the collated output statistically. Vortex is a software for
    the development of individual-based model for population dynamic simulation
    (see <http://www.vortex10.org/Vortex10.aspx>).
Contains selected data from two publications,
    Campbell et al. (2016) <DOI:10.1080/14486563.2015.1028486>
    and Pacioni et al. (2017) <DOI:10.1071/PC17002>.
    The data is provided both as raw outputs from the population viability
    analysis software Vortex and packaged as R objects.
    The R package 'vortexR' uses the raw data provided here to illustrate its
    functionality of parsing raw Vortex output into R objects.
Voss package provides functionality for generating
        realizations of a fractal Brownian function on uniform 1D & 2D
        grid with classic and generic versions of the Voss algorithm
        (random sequential additions)
Counting election votes and determining election results by different methods, including the single transferable vote, approval, score and plurality methods.
Calculates voter transitions comparing two elections, using the function solve.QP() in package 'quadprog'.
Procedures for the manipulation, normalization, and plotting of phonetic and sociophonetic vowel formant data.  vowels is the backend for the NORM website.
Parametric and semiparametric inference for massively parallel
    models, i.e., a large number of models with common design matrix, as often
    occurs with brain imaging data.
Functions for the mass-univariate voxelwise analysis of medical imaging data that follows the NIfTI <http://nifti.nimh.nih.gov> format.
Tools for tree crown structure description based on T-LiDAR data voxelisation
In recognition that there are many factors (genetic loci, macro-
    genetic factors such as sex, and environmental factors) that influence the
    extent of environmental variation, the 'vqtl' package conducts genome scans
    that accommodate and target these factors. The main functions of this package,
    scanonevar() and scanonevar.perm() take as input a cross object from the popular
    'qtl' package.
Estimation of varying regression segments and a change point in
    2-segment regression models with heteroscedastic variances, and with or
    without a smoothness constraint at the change point.
vrmlgen creates 3D scatter and bar plots, visualizations of 3D meshes, parametric functions and height maps in web-formats like the Virtual Reality Markup Language (VRML, filetype .wrl) and the LiveGraphics3D format.
This is a package to visualize risk prediction models. For each
    predictor, a color bar represents the contribution to the linear predictor or
    latent variable. A conversion from the linear predictor to the estimated risk
    or survival is also given. (Cumulative) contribution charts enable to visualize
    how the estimated risk for one particular observation is obtained by the model.
    Several options allow to choose different color maps, and to select the zero
    level of the contributions. The package is able to deal with 'glm', 'coxph',
    'mfp', 'multinom' and 'ksvm' objects. For 'ksvm' objects, the visualization
    is not always exact. Functions providing tools to indicate the accuracy of the
    approximation are provided in addition to the visualization.
A collection of statistical tests for martingale difference hypothesis
Performs variable selection/feature reduction under a clustering or classification framework. In particular, it can be used in an automated fashion using mixture model-based methods (tEIGEN and MCLUST are currently supported).
Calculates the enrichment of associated variant set (AVS) for an array of genomic regions. The AVS is the collection of disjoint LD blocks computed from a list of disease associated SNPs and their linked (LD) SNPs. VSE generates a null distribution of matched random variant sets (MRVSs) from 1000 Genome Project Phase III data that are identical to AVS, LD block by block. It then computes the enrichment of AVS intersecting with user provided genomic features (e.g., histone marks or transcription factor binding sites) compared with the null distribution.
Three steps variable selection procedure based on random forests.
    Initially developed to handle high dimensional data (for which number of
    variables largely exceeds number of observations), the package is very
    versatile and can treat most dimensions of data, for regression and
    supervised classification problems. First step is dedicated to eliminate
    irrelevant variables from the dataset. Second step aims to select all
    variables related to the response for interpretation purpose. Third step
    refines the selection by eliminating redundancy in the set of variables
    selected by the second step, for prediction purpose.
Designed to facilitate the assimilation, analysis and synthesis of animal location and movement data collected by the VEMCO suite of acoustic transmitters and receivers. As well as database and geographic information capabilities the principal feature of VTrack is the qualification and identification of ecologically relevant events from the acoustic detection and sensor data. This procedure condenses the acoustic detection database by orders of magnitude, greatly enhancing the synthesis of acoustic detection data.
A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner.
    'vtreat' prepares variables so that data has fewer exceptional cases, making
    it easier to safely use models in production. Common problems 'vtreat' defends
    against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new
    categorical levels (levels seen during application, but not during training).
    'vtreat::prepare' should be used as you would use 'model.matrix'.
Contains functions for visualization univariate data: ccdplot and qddplot.
Gaze data from the Visual World Paradigm requires significant
    preprocessing prior to plotting and analyzing the data. This package 
    provides functions for preparing visual world eye-tracking data for 
    statistical analysis and plotting. It can prepare data for linear 
    analyses (e.g., ANOVA, Gaussian-family LMER, Gaussian-family GAMM) as
    well as logistic analyses (e.g., binomial-family LMER and binomial-family GAMM).
    Additionally, it contains various plotting functions for creating grand average and
    conditional average plots. See the vignette for samples of the functionality.
    Currently, the functions in this package are designed for handling data
    collected with SR Research Eyelink eye trackers using Sample Reports created
    in SR Research Data Viewer.  While we would like to add functionality 
    for data collected with other systems in the future, the current package is 
    considered to be feature-complete and will shortly enter maintenance mode.
Functions and data for use in visual word recognition research: 
	 Computation of neighbors (Hamming and Levenshtein
	 distances), average distances to neighbors (e.g., OLD20),
	 and Coltheart's N. Also includes the LD1NN algorithm to
	 detect bias in the composition of a lexical decision task. Most of
	 the functions support parallel execution. Supplies wordlists for 
	 several languages. Uses the string distance functions from the stringdist package by Mark van der Loo.
Set of functions that improves the graphical presentations of the functions 'wave.correlation' and 'spin.correlation' (waveslim package, Whitcher 2012) and the 'wave.multiple.correlation' and 'wave.multiple.cross.correlation' (wavemulcor package, Fernandez-Macho 2012b). The plot outputs (heatmaps) can be displayed in the screen or can be saved as PNG or JPG images or as PDF or EPS formats. The W2CWM2C package also helps to handle the (input data) multivariate time series easily as a list of N elements (times series) and provides a multivariate data set (dataexample) to exemplify its use. A description of the package was published in Computing in Science & Engineering (Volume:16, Issue: 6) on Sep. 09, 2014, doi:10.1109/MCSE.2014.96.
R interface to a W3C Markup Validation service.
  See <http://validator.w3.org/> for more information.
Downloads and tidies Aswath Damodaran's Cost of Capital Data.
Multivariate weather generator for daily climate variables based 
    on weather-states using a Markov chain for modeling the succession of weather states. 
    Conditionally to the weather states, the multivariate variables are modeled using the family 
    of Complete Skew-Normal distributions. Parameters are estimated on measured series. Data must 
    include the variable 'Rain' and can accept as many other variables as desired.
waffect (pronounced 'double-u affect' for 'weighted
        affectation') is a package to simulate phenotypic (case or
        control) datasets under a disease model H1 such that the total
        number of cases is constant across all the simulations (the
        constrain in the title). The package also makes it possible to
        generate phenotypes in the case of more than two classes, so
        that the number of phenotypes belonging to each class is
        constant across all the simulations. waffect is used to assess
        empirically the statistical power of Genome Wide Association
        studies.
Square pie charts (a.k.a. waffle charts) can be used
    to communicate parts of a whole for categorical quantities. To emulate the
    percentage view of a pie chart, a 10x10 grid should be used with each square
    representing 1% of the total. Modern uses of waffle charts do not
    necessarily adhere to this rule and can be created with a grid of any
    rectangular shape. Best practices suggest keeping the number of categories
    small, just as should be done when creating pie charts. Tools are provided
    to create waffle charts as well as stitch them together, and to use glyphs
    for making isotype pictograms.
Fit the fixed effect panel data model with heteroskedasticity and
    autocorrelation correction.
Generates random data sets including: data.frames, lists,
    and vectors.
Bayesian dynamic regression models where the regression 
    coefficients can vary over time as random 
    walks. Gaussian, Poisson, and binomial observations are supported. 
    The Markov chain Monte Carlo computations are done using 
    Hamiltonian Monte Carlo provided by Stan, using a state space representation 
    of the model in order to marginalise over the coefficients for efficient sampling.
Consider the intersection of two spaces: the complete solution space
             to Ax = b and the N-simplex. The intersection of these two spaces is 
             a non-negative convex polytope. The package walkr samples from this 
             intersection using two Monte-Carlo Markov Chain (MCMC) methods: 
             hit-and-run and Dikin walk. walkr also provide tools to examine sample 
             quality.
A collection of functions to perform the Application
        Programming Interface (API) calls associated with the Walk
        Score website (www.walkscore.com) within the R environment.
        These functions can be used to query the Walk Score and Transit
        Score database for a wide variety of information using R
        scripts. This package includes the simple Walk Score and
        Transit Score API calls, which return the scores associated
        with an input location, as well as calls which return some data
        used to calculate the scores. These functions are especially
        useful for mass data collection and gathering Walk Score and
        Transit Score values for large lists of locations.
The 'shiny' application Wallace is a modular platform for reproducible modeling of species niches and distributions. Wallace guides users through a complete analysis, from the acquisition of species occurrence and environmental data to visualizing model predictions on an interactive map, thus bundling complex workflows into a single, streamlined interface.
A prediction model is calibrated if, roughly, for any percentage x we can expect that x subjects out of 100 experience the event among all subjects that have a predicted risk of x%. A calibration plot provides a simple, yet useful, way of assessing the calibration assumption. The Wally plot consists of a sequence of usual calibration plots. Among the plots contained within the sequence, one is the actual calibration plot which has been obtained from the data and the others are obtained from similar simulated data under the calibration assumption. It provides the investigator with a direct visual understanding of the shape and sampling variability that are common under the calibration assumption. The original calibration plot from the data is included randomly among the simulated calibration plots, similarly to a police lineup. If the original calibration plot is not easily identified then the calibration assumption is not contradicted by the data. The method handles the common situations in which the data contain censored observations and occurrences of competing events.
A toolbox of common robust statistical tests, including robust
  descriptives, robust t-tests, and robust ANOVA. It is also available as a
  module for 'jamovi' (see <https://www.jamovi.org> for more information).
  Walrus is based on the WRS2 package by Patrick Mair, which is in turn based on
  the scripts and work of Rand Wilcox. These analyses are described in depth in
  the book 'Introduction to Robust Estimation & Hypothesis Testing'.
The 'libmagic' library provides functions to determine
    'MIME' type and other metadata from files through their "magic"
    attributes. This is useful when you do not wish to rely solely on
    the honesty of a user or the extension on a file name. It also
    incorporates other metadata from the mime-db database
    <https://github.com/jshttp/mime-db>.
A tool to streamline the analysis of animal acoustic signal structure. The package offers functions for downloading avian vocalizations from the open-access online repository Xeno-Canto, displaying the geographic extent of the recordings, manipulating sound files, detecting acoustic signals or importing detected signals from other software, assessing performance of methods that measure acoustic similarity, conducting cross-correlations, dynamic time warping, measuring acoustic parameters and analysing interactive vocal signals, among others. Most functions working iteratively allow parallelization to improve computational efficiency.
This estimates precise weaning ages
	for a given skeletal population
	by analyzing the stable nitrogen isotope ratios of them.
	Bone collagen turnover rates estimated anew and
	the approximate Bayesian computation (ABC)
	were adopted in this package.
Mixed effects modeling with warping for functional data using B-
    spline. Warping coefficients are considered as random effects, and warping
    functions are general functions, parameters representing the projection onto B-
    spline basis of a part of the warping functions. Warped data are modelled by a
    linear mixed effect functional model, the noise is Gaussian and independent from
    the warping functions.
Helpful tools for data processing and visualisation of results of the hydrological model WASIM-ETH.
Tools and functions to calculate actual Evapotranspiration
    using surface energy balance models.
Imports U.S. Geological Survey (USGS) daily hydrologic data from USGS web services (see <https://waterservices.usgs.gov/> for more information), plots the data, addresses some common data problems, and calculates and plots anomalies.
Provides support for creating waterfall charts in R
    using both traditional base and lattice graphics.
A not uncommon task for quants is to create 'waterfall charts'. There seems to be no simple way to do this in 'ggplot2' currently. This package contains a single function (waterfall) that simply draws a waterfall chart in a 'ggplot2' object. Some flexibility is provided, though often the object created will need to be modified through a theme.
Lets you connect to any of the Consortium of Universities for the Advancement
    of Hydrologic Sciences, Inc. ('CUAHSI') Water Data Center 'WaterOneFlow' web services
    and read any 'WaterML' hydrological time series data file. To see list of available
    web services, see <http://hiscentral.cuahsi.org>. All versions of 'WaterML'
    (1.0, 1.1 and 2.0) and both types of the web service protocol ('SOAP' and 'REST') are supported.
    The package has six data download functions: GetServices(): show all public web
    services from the HIS Central Catalog. HISCentral_GetSites() and HISCentral_GetSeriesCatalog():
    search for sites or time series from the HIS Central catalog based on geographic bounding box,
    server, or keyword. GetVariables(): Show a data.frame with all variables on the server.
    GetSites(): Show a data.frame with all sites on the server. GetSiteInfo(): Show what variables,
    methods and quality control levels are available at the specific site. GetValues(): Given a site
    code, variable code, start time and end time, fetch a data.frame of all the observation time
    series data values. The GetValues() function can also parse 'WaterML' data from a custom URL or
    from a local file. The package also has five data upload functions:
    AddSites(), AddVariables(), AddMethods(), AddSources(), and AddValues().
    These functions can be used for uploading data to a 'HydroServer Lite' Observations
    Data Model ('ODM') database via the 'JSON' data upload web service interface.
Methods for watersheds aggregation and spatial drainage network analysis.
Wrap-around Time Series (WATS) plots for interrupted time series
    designs with seasonal patterns.
Computes Bayesian wavelet shrinkage credible intervals
Makes available code necessary to reproduce figures and
        tables in papers on the WaveD method for wavelet deconvolution
        of noisy signals as presented in The WaveD Transform in R,
        Journal of Statistical Software Volume 21, No. 3, 2007.
Wavelet analysis and reconstruction of time series, cross-wavelets and phase-difference (with filtering options), significance with simulation algorithms.
Estimation of the long memory parameter using wavelets. Other estimation techniques like 
             GPH (Geweke and Porter-Hudak,1983, <DOI:10.1111/j.1467-9892.1983.tb00371.x>) 
             and Semiparametric methods(Robinson, P. M.,1995, <DOI:10.1214/aos/1176324317>) also have included.
This package contains functions for computing and plotting
        discrete wavelet transforms (DWT) and maximal overlap discrete
        wavelet transforms (MODWT), as well as their inverses.
        Additionally, it contains functionality for computing and
        plotting wavelet transform filters that are used in the above
        decompositions as well as multiresolution analyses.
Wavelet routines that calculate single sets of 
             wavelet multiple correlations (WMC) and cross-correlations (WMCC)
             out of n variables (either 1D time series, 2D images or 3D arrays). 
             They can later be plotted in single graphs, as an alternative to trying 
             to make sense out of several sets of wavelet correlations or 
             wavelet cross-correlations. 
             The code is based on the calculation, at each wavelet scale, of the 
             square root of the coefficient of determination in a linear combination 
             of variables for which such coefficient of determination is a maximum. 
             The code provided here is based on the wave.correlation routine in 
             Brandon Whitcher's waveslim R package Version: 1.6.4, which in turn is 
             based on wavelet methodology developed in Percival and Walden (2000); 
             Gençay, Selçuk and Whitcher (2001) and others.
             Version 2 incorporates wavelet local multiple correlations (WLMC).
             These are like the previous global WMC but consisting in one
             single set of multiscale correlations along time. That is, at each time
             t, they are calculated by letting a window of weighted wavelet 
             coefficients around t move along time. Six weight functions are provided.
             Namely, the  uniform window, Cleveland's tricube window, Epanechnikov's 
             parabolic window, Bartlett's triangular window and Wendland's truncated 
             power window and the Gaussian window.
Functions for calculating the
    fetch (length of open water distance along given directions)
    and estimating wave energy from wind and wave monitoring data.
For multivariate datasets, this function enables the estimation of missing data using the Weighted AVERage of all possible Regressions using the data available.
Basic wavelet routines for time series (1D), image (2D) 
  and array (3D) analysis.  The code provided here is based on
  wavelet methodology developed in Percival and Walden (2000);
  Gencay, Selcuk and Whitcher (2001); the dual-tree complex wavelet
  transform (DTCWT) from Kingsbury (1999, 2001) as implemented by
  Selesnick; and Hilbert wavelet pairs (Selesnick 2001, 2002).  All
  figures in chapters 4-7 of GSW (2001) are reproducible using this 
  package and R code available at the book website(s) below.
Performs 1, 2 and 3D real and complex-valued wavelet transforms,
	nondecimated transforms, wavelet packet transforms, nondecimated
	wavelet packet transforms, multiple wavelet transforms,
	complex-valued wavelet transforms, wavelet shrinkage for
	various kinds of data, locally stationary wavelet time series,
	nonstationary multiscale transfer function modeling, density
	estimation.
Supplies bootstrap alternatives to traditional hypothesis-test
  and confidence-interval procedures such as one-sample and two-sample
  inferences for means, medians, standard deviations, and proportions; simple
  linear regression; and more. Suitable for general audiences, including
  individual and group users, introductory statistics courses, and more advanced
  statistics courses that desire an introduction to bootstrap methods.
Provides efficient implementation of the Wild Binary Segmentation and Binary
    Segmentation algorithms for estimation of the number and locations of
    multiple change-points in the piecewise constant function plus Gaussian
    noise model.
Tools for searching and downloading data and statistics from
  the World Bank Data API (<http://data.worldbank.org/developers/api-overview>)
  and the World Bank Data Catalog API (<http://data.worldbank.org/developers/data-catalog-api>).
Implements detection for the number and locations of
    the change-points in a time series using the Wild Binary Segmentation and
    the Locally Stationary Wavelet model.
WCE implements a flexible method for modeling cumulative effects of time-varying exposures, weighted according to their relative proximity in time, and represented by time-dependent covariates. The current implementation estimates the weight function in the Cox proportional hazards model. The function that assigns weights to doses taken in the past is estimated using cubic regression splines.
Calculates Pearson, Spearman, polychoric, and polyserial correlation coefficients, in weighted or unweighted form. The package implements tetrachoric correlation as a special case of the polychoric and biserial correlation as a specific case of the polyserial.
The package contains the WCQ method for detection of QTL
        effects in a small mapping population. It also contains
        implementation of the Chen-Qin two-sample and one-sample test
        of means.
Search, extract and format data from the World Bank's
    World Development Indicators
There are a number of binary files associated with the
    'Webdriver'/'Selenium' project (see <http://www.seleniumhq.org/download/>,
    <https://sites.google.com/a/chromium.org/chromedriver/>,
    <https://github.com/mozilla/geckodriver>,
    <http://phantomjs.org/download.html> and
    <https://github.com/SeleniumHQ/selenium/wiki/InternetExplorerDriver> for
    more information). This package provides functions to download these
    binaries and to manage processes involving them.
Functions that help in fetching weather data from
    websites. Given a location and a date range, these functions help fetch
    weather data (temperature, pressure etc.) for any weather related analysis.
Functions to convert between weather metrics, including conversions
    for metrics of temperature, air moisture, wind speed, and precipitation.
    This package also includes functions to calculate the heat index from
    air temperature and air moisture.
Handle instant weather forecasts and geographical information. It combines multiple sources of information to obtain instant weather forecasts.
Chemical information from around the web. This package interacts
    with a suite of web APIs for chemical information.
The web version WebGestalt <http://www.webgestalt.org> supports 12 organisms, 324 gene identifiers and 150,937 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis. The user-friendly output interface allow interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneous analyze multiple gene lists.
Displays geospatial data on an interactive 3D globe in the web browser.
Stubbing and setting expectations on 'HTTP' requests.
    Includes tools for stubbing 'HTTP' requests, including expected
    request conditions and response conditions. Match on
    'HTTP' method, query parameters, request body, headers and
    more.
Lossless webp images are 26% smaller in size compared to PNG. Lossy
    webp images are 25-34% smaller in size compared to JPEG. This package reads
    and writes webp images into a 3 (rgb) or 4 (rgba) channel bitmap array using
    conventions from the 'jpeg' and 'png' packages.
R is used by a vast array of people for a vast array of purposes
    - including web analytics. This package contains functions for consuming and
    munging various common forms of request log, including the Common and Combined
    Web Log formats and various Amazon access logs.
Functions that allow for accessing domains and a number of search engines.
Takes screenshots of web pages, including Shiny applications.
Provides functions to query data from the 'WebTRIS' Traffic Flow API (from Highways England) into tidy data frames.
    The API documentation is available here: <http://webtris.highwaysengland.co.uk/api/swagger/ui/index>.
A Stata-style `webuse()` function for importing named datasets from Stata's online collection.
High performance in-memory http request parser for application/json, 
    multipart/form-data, and application/x-www-form-urlencoded. Includes live demo
    of hosting and parsing multipart forms with either 'httpuv' or 'Rhttpd'.
Uses Protovis to provide web graphics for R (exposes most
        low-level functions).  Package is still under active
        development and shouldn't be considered stable until version
        0.1.  Currently uses a web browser to process JavaScript,
        although future version will process JavaScript directly and
        return the SVG output.  Also does not properly support discrete
        labels (e.g. with histograms) or statistical functions.  See
        website for more details.
Provides functions to create factor variables with contrasts based on weighted effect coding, and their interactions. In weighted effect coding the estimates from a first order regression model show the deviations per group from the sample mean. This is especially useful when a researcher has no directional hypotheses and uses a sample from a population in which the number of observation per group is different.
Western Electric Company Rules (WECO) have been widely used for
    Shewhart control charts in order to increase the sensitivity of detecting
    assignable causes of process change. This package implements eight commonly
    used WECO rules and allow to apply the combination of these individual rules
    for detecting the deviation from a stable process. The package also provides
    a web-based graphical user interface to help users conduct the analysis.
Secondary analysis of case-control studies using a weighted estimating equation (WEE) approach: logistic regression for binary secondary outcomes, linear regression and quantile regression for continuous secondary outcomes.
Clusters state sequences and weighted data. It provides an optimized weighted PAM algorithm as well as functions for aggregating replicated cases, computing cluster quality measures for a range of clustering solutions and plotting clusters of state sequences.
Weighted descriptive statistics is the discipline of quantitatively describing the main features of real-valued fuzzy data which usually given from a fuzzy population. One can summarize this special kind of fuzzy data numerically or graphically using this package. To interpret some of the properties of one or several sets of real-valued fuzzy data, numerically summarize is possible by some weighted statistics which are designed in this package such as mean, variance, covariance and correlation coefficent. Also, graphically interpretation can be given by weighted histogram and weighted scatter plot using this package to describe properties of real-valued fuzzy data set.
This packages contains the Weighted Portmanteau Tests as
        described in "New Weighted Portmanteau Statistics for Time
        Series Goodness-of-Fit Testing' accepted for publication by the
        Journal of the American Statistical Association.
Fast computation of
 Receiver Operating Characteristic (ROC) curves
 and Area Under the Curve (AUC)
 for weighted binary classification problems
 (weights are example-specific cost values).
Has functions to implement the weighted scores method and CL1 information criteria as an intermediate step for variable/correlation selection for longitudinal categorical and count data in Nikoloulopoulos, Joe and Chaganty (2011, Biostatistics, 12: 653-665) and Nikoloulopoulos (2015a,2015b).
Estimates the Vevea and Hedges (1995) <doi:10.1007/BF02294384>
    weight-function model. By specifying arguments, users can
    also estimate the modified model described in Vevea and Woods (2005) 
    <doi:10.1037/1082-989X.10.4.428>, which may be more practical with small datasets. Users 
    can also specify moderators to estimate a linear model. The package functionality 
    allows users to easily extract the results of these analyses as R objects for 
    other uses. In addition, the package includes a function to launch both models as 
    a Shiny application. Although the Shiny application is also available online, 
    this function allows users to launch it locally if they choose.
Provides a variety of functions for producing simple weighted statistics, such as weighted Pearson's correlations, partial correlations, Chi-Squared statistics, histograms, and t-tests.  Also now includes some software for quickly recoding survey data and plotting point estimates from interaction terms in regressions (and multiply imputed regressions).  Future versions of the package will be more closely integrated with "anesrake" and additional weighting tools and will provide the option to find weighting benchmarks and weight data using a variety of methodologies.  NOTE: Weighted partial correlation calculations temporarily pulled to address a bug.
The weightTAPSPACK subsets The American Panel Survey (TAPS) data by outcome and covariates, models the attrition rates, imputes data for attrited individuals, and finds weights for analysis.
Provides computational support for flow over weirs, such as sharp-crested, broad-crested, and embankments. Initially, the package supports broad- and sharp-crested weirs.
Implementation of Johansen's general formulation of Welch-James's statistic with Approximate Degrees of Freedom, which makes it suitable for testing 
    any linear hypothesis concerning cell means in univariate and multivariate mixed model designs when the data pose non-normality and non-homogeneous variance. Some 
    improvements, namely trimmed means and Winsorized variances, and bootstrapping for calculating an empirical critical value, have been added to the classical formulation. 
    The code departs from a previous SAS implementation by L.M. Lix and H.J. Keselman, available at <http://homepage.usask.ca/~lml321/Program.pdf> and
    published in Keselman, H.J., Wilcox, R.R., and Lix, L.M. (2003) <DOI:10.1111/1469-8986.00060>.
Convert 'WKT' to 'GeoJSON' and 'GeoJSON' to 'WKT'. Functions
    included for converting between 'GeoJSON' to 'WKT', creating both
    'GeoJSON' features, and non-features, creating WKT from R objects
    (e.g., lists, data.frames, vectors), and linting 'WKT'.
Palettes generated mostly from Wes Anderson movies
Provides a computationally efficient way of fitting
	     weighted linear fixed effects estimators for causal
	     inference with various weighting schemes. Weighted linear
	     fixed effects estimators can be used to estimate the
	     average treatment effects under different identification
	     strategies. This includes stratified randomized
	     experiments, matching and stratification for
	     observational studies, first differencing, and
	     difference-in-differences. The package implements methods
	     described in Imai and Kim (2017) "When should We Use
	     Linear Fixed Effects Regression Models for Causal
	     Inference with Longitudinal Data?", available at
	     <https://imai.princeton.edu/research/FEmatch.html>.
Implementation of Weighted Fast Greedy algorithm for community detection in networks with mixed types of attributes.
Provides a large English words list and tools to find words by patterns. In particular, anagram finder and scrabble word finder.
Integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.
Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
Weighted generalized estimating equations (WGEE) is an extension of generalized linear models to longitudinal clustered data by incorporating the correlation within-cluster when data is missing at random (MAR). The parameters in mean, scale correlation structures are estimated based on quasi-likelihood. Multiple model selection criterion are provided for selection of mean model and working correlation structure based on WGEE/GEE.
Non parametric alternative to Kolmogorov-Smirnov based
    standard GSEA testing.
Inferences about counterfactuals are essential for prediction,
      answering what if questions, and estimating causal effects.
      However, when the counterfactuals posed are too far from the data at
      hand, conclusions drawn from well-specified statistical analyses
      become based largely on speculation hidden in convenient modeling
      assumptions that few would be willing to defend. Unfortunately,
      standard statistical approaches assume the veracity of the model
      rather than revealing the degree of model-dependence, which makes this
      problem hard to detect. WhatIf offers easy-to-apply methods to
      evaluate counterfactuals that do not require sensitivity testing over
      specified classes of models. If an analysis fails the tests offered
      here, then we know that substantive inferences will be sensitive to at
      least some modeling choices that are not based on empirical evidence,
      no matter what method of inference one chooses to use. WhatIf
      implements the methods for evaluating counterfactuals discussed in
      Gary King and Langche Zeng, 2006, "The Dangers of Extreme
      Counterfactuals," Political Analysis 14 (2) <DOI:10.1093/pan/mpj004>; 
      and Gary King and Langche Zeng, 2007, "When Can History Be Our Guide? The 
      Pitfalls of Counterfactual Inference," International Studies 
      Quarterly 51 (March) <DOI:10.1111/j.1468-2478.2007.00445.x>.
logicless templating, reuse templates in many programming
        languages including R
Shinohara et. al (2014) <DOI:10.1016/j.nicl.2014.08.008>
    introduced Whitestripe, an intensity-based normalization of T1 
    and T2 images, where normal 
    appearing white matter performs well, but requires segmentation.
    This method performs white matter mean and standard deviation
    estimates on data that has been rigidly-registered to the MNI
    template and uses histogram-based methods.
Provides programmatic access to the World Health Organization API.
Look up the username and full name of the current user,
    the current user's email address and 'GitHub' username,
    using various sources of system and configuration information.
Retrieve data from the 'Whoapi' (https://whoapi.com) store of
    domain information, including a domain's geographic location, registration
    status and search prominence.
Provides very fast access to whole genome, population scale variation data
	from VCF files and sequence data from FASTA-formatted files.
	It also reads in alignments from FASTA, Phylip, MAF and other file formats.
	Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data
	from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
Utilities to generate bounding boxes from 'WKT' (Well-Known Text) objects and R data types, validate
             'WKT' objects and convert object types from the 'sp' package into 'WKT' representations.
Fit, forecast, predict massive spacio-temporal data
Extends the glmnet and relaxnet packages with polynomial basis expansions. Basis expansion is applied to the predictors and a subset of the basis functions is chosen using relaxnet. Predictors may be screened using correlation or t-tests. Screening is done separately within cross-validation folds. Cross-validation may be used to select the order of basis expansion and alpha, the elastic net tuning parameter.
Provides two functions 'frameableWidget()', and 'frameWidget()'.
  The 'frameableWidget()' is used to add extra code to a 'htmlwidget' which
  allows is to be rendered correctly inside a responsive 'iframe'.
  The 'frameWidget()' is a 'htmlwidget' which displays content of another 'htmlwidget'
  inside a responsive 'iframe'.
  These functions allow for easier embedding of 'htmlwidgets' in content management systems
  such as 'wordpress', 'blogger' etc.
  They also allow for separation of widget content from main HTML content where
  CSS of the main HTML could interfere with the widget.
Encapsulates the pattern of untidying data into a wide matrix,
  performing some processing, then turning it back into a tidy form. This
  is useful for several operations such as co-occurrence counts,
  correlations, or clustering that are mathematically convenient on wide matrices.
The german Wikibook "GNU R" introduces R to new users.
        This package is a collection of functions and datas used in the
        german WikiBook "GNU R"
An API client for the 'Wikidata Query Service'
    <https://query.wikidata.org/>.
An API client for the Wikidata <http://wikidata.org/> store of
    semantic data.
Scrape lake metadata tables from Wikipedia <http://www.wikipedia.org>.
Provides an interface to the Wikipedia web application programming
    interface (API), using internet connexion.Three functions provide details for
    a specific Wikipedia page : all links that are present, all pages that link
    to, all the contributions (revisions for main pages, and discussions for talk
    pages). Two functions provide details for a specific user : all contributions,
    and general information (as name, gender, rights or groups). It provides
    additional information compared to others packages, as WikipediR. It does not
    need login. The multiplex network that can be constructed from the results
    of the functions of WikipediaR can be modeled as Stochastic Block Model as in
    Barbillon P., Donnet, S., Lazega E., and Bar-Hen A. : Stochastic Block Models
    for Multiplex networks: an application to networks of researchers, ArXiv
    1501.06444, http://arxiv.org/abs/1501.06444.
Public attention is an interesting field of study. The
    internet not only allows to access information in no time on
    virtually any subject but via page access statistics gathered
    by website authors the subject of attention as well can be
    studied. For the omnipresent Wikipedia those access statistics
    are made available via 'http://stats.grok.se' a server
    providing the information as file dumps as well as as web API.
    This package provides an easy to use, consistent and traffic
    minimizing approach to make those data accessible within R.
A wrapper for the MediaWiki API, aimed particularly at the
    Wikimedia 'production' wikis, such as Wikipedia. It can be used to retrieve
    page text, information about users or the history of pages, and elements of
    the category tree.
MediaWiki is  wiki platform. Providing the infrastructure of Wikipedia, it also offers very sophisticated archiving functionalities.
  This package is built to store these wiki's archives to R object - data-frame, lists, vector and variables. All data are downloaded
  with the help of MediaWiki REST API. For instance, you can get all revisions made by a contributor - contrib_list(), all the revisions 
  of a page page_revisions(), or create corpus of contributors - corpus_contrib_create() - and pages corpus_page_create(). Then, you can 
  make these corpus rich of data about contributors or pages - corpus_contrib_data() or corpus_page_data().
'Taxonomic' information from 'Wikipedia', 'Wikicommons',
    'Wikispecies', and 'Wikidata'. Functions included for getting
    taxonomic information from each of the sources just listed, as
    well performing taxonomic search.
This package provides functions to perform fast variable
        selection based on the Wilcoxon rank sum test in the
        cross-validation or Monte-Carlo cross-validation settings, for
        use in microarray-based binary classification.
Dynamic interaction refers to spatial-temporal associations in the
    movements of two (or more) animals. This package provides tools for
    calculating a suite of indices used for quantifying dynamic interaction
    with wildlife telemetry data. For more information on each of the methods
    employed see the references within. The package draws heavily on the
    classes and methods developed in the 'adehabitat' packages.
Provides insight into how the best hand for a poker game changes based on the game dealt, players who stay in until the showdown and wildcards added to the base game.  At this time the package does not support player tactics, so draw poker variants are not included.
Analysing convergent evolution using the Wheatsheaf index.
The genetic algorithm is designed to optimize small wind farms consisting 
    of up to 50 turbines. The algorithm works with a fixed amount of turbines, a fixed 
    rotor radius and a mean wind speed value for every incoming wind direction.
    If required, it can include a terrain effect model which downloads an 
    'SRTM' elevation model automatically and loads a Corine Land Cover raster, 
    which has to be downloaded previously. 
    Further information can be found in the description of the function 'windfarmGA'. 
    To start an optimization run, either the function 'windfarmGA' or 'genAlgo' can 
    be used. The function 'windfarmGA' checks the user inputs interactively and then 
    runs the function 'genAlgo'. If the input parameters are already known, an 
    optimization can be run directly via the function 'genAlgo'. 
    Their output is identical.
Helps for interfacing with the operating system
    particularly for Windows.
Data sets from the World Input Output Database, for the years 1995-2011.
Provides simple, fast functions for maximum likelihood and Bayesian estimates of wildlife population parameters, suitable for use with simulated data or bootstraps. Early versions were indeed quick and dirty, but optional error-checking routines and meaningful error messages have been added. Includes single and multi-season occupancy, closed capture population estimation, survival, species richness and distance measures.
Perform the Wild Scale-Enhanced (WiSE) bootstrap.  Specifically, the user may supply a single or multiple equally-spaced time series and use the WiSE bootstrap to select a wavelet-smoothed model.  Conversely, a pre-selected smooth level may also be specified for the time series.  Quantities such as the bootstrap sample of wavelet coefficients, smoothed bootstrap samples, and specific hypothesis testing and confidence region results of the wavelet coefficients may be obtained.  Additional functions are available to the user which help format the time series before analysis.  This methodology is recommended to aid in model selection and signal extraction.
    Note:  This package specifically uses wavelet bases in the WiSE bootstrap methodology, but the theoretical construct is much more versatile.
A set of functions to run code 'with' safely and temporarily
    modified global state. Many of these functions were originally a part of the
    'devtools' package, this provides a simple package with limited dependencies
    to provide access to these functions.
Utility functions to convert between the 'Spatial' classes
    specified by the package 'sp', and the well-known binary '(WKB)'
    representation for geometry specified by the Open Geospatial Consortium.
    Supports 'Spatial' objects of class 'SpatialPoints',
    'SpatialPointsDataFrame', 'SpatialLines', 'SpatialLinesDataFrame',
    'SpatialPolygons', and 'SpatialPolygonsDataFrame'. Supports 'WKB' geometry
    types 'Point', 'LineString', 'Polygon', 'MultiPoint', 'MultiLineString', and
    'MultiPolygon'. Includes extensions to enable creation of maps with
    'TIBCO Spotfire'.
Converts weekly data to monthly data.
     Users can use three types of week formats: ISO week, epidemiology week (epi week) and calendar date.
Approach to the robustness via Weighted Likelihood.
Use various regression models for the analysis of win loss endpoints 
             adjusting for non-binary and multivariate covariates.
A GUI R implementation of hierarchical Bayesian models of working memory, used for analyzing change detection data.
Distance discriminant analysis method is one of
        classification methods according to multiindex performance
        parameters.However,the traditional Mahalanobis distance
        discriminant method treats with the importance of all
        parameters equally,and exaggerates the role of parameters which
        changes a little.The weighted Mahalanobis distance is used in
        discriminant analysis method to distinguish the importance of
        each parameter.In the concrete application,firstly based on the
        principal component analysis scheme,a new group of parameters
        and their corresponding percent contributions of the parameters
        are calculated ,and the weighted matrix is regarded as the
        diagonal matrix of the contributions rates.Setting data to
        standardization,then the weighted Mahalanobis distance can be
        calculated.Besides the methods metioned above,bayes method is
        also given.
A tokenizer to read a text file token by token with a very lightweight API, a framework for stateful computations with finite state machines and a few string utility functions.
Analyzing the texture of an image from a multifractal wavelet leader analysis.
Software to book Wavelet Methods for Time Series Analysis,
        Donald B. Percival and Andrew T. Walden, Cambridge University
        Press, 2000.
Estimates Poole and Rosenthal W-NOMINATE scores from roll
        call votes supplied though a 'rollcall' object from package
        'pscl'.
Shows the relationship between an independent and dependent variable through Weight of Evidence and Information Value.
Implements an automated binning of numeric variables and factors with
 respect to a dichotomous target variable.
 Two approaches are provided: An implementation of fine and coarse classing that
 merges granular classes and levels step by step. And a tree-like approach that
 iteratively segments the initial bins via binary splits. Both procedures merge,
 respectively split, bins based on similar weight of evidence (WOE) values and
 stop via an information value (IV) based criteria.
 The package can be used with single variables or an entire data frame. It provides
 flexible tools for exploring different binning solutions and for deploying them to
 (new) data.
Implements a spatiotemporal boundary detection model with a dissimilarity
    metric for areal data with inference in a Bayesian setting using Markov chain
    Monte Carlo (MCMC). The response variable can be modeled as Gaussian (no nugget),
    probit or Tobit link and spatial correlation is introduced at each time point
    through a conditional autoregressive (CAR) prior. Temporal correlation is introduced
    through a hierarchical structure and can be specified as exponential or first-order
    autoregressive. Full details of the package can be found in the accompanying vignette.
Those new to econometrics and R may find themselves challenged by data 
    management tasks inherent to both. The wooldridge data package aims to lighten 
    the task by efficiently loading any data set from the text with a single command. 
    Collectively, all data sets have been compressed to 62.73% of their original
    size. Most sets have robust documentation including page numbers on which they 
    are used, original data sources, original year of publication, and notes which 
    chronicle their history while offering ideas for further exploration and research.
    To resurrect a data set, one can pass it's name to the `data()` function or just
    define it as the `data =` argument of the model function. The data will lazily load 
    and, provided the syntax is correct, model estimates shall spring forth from 
    the otherwise lifeless abyss of your R console! If the syntax is an issue, the 
    wooldridge-vignette displays solutions to examples from each chapter of the 
    text, providing a relevant introduction to econometric modeling with R. The vignette 
    closes with an Appendix of recommended sources for R and econometrics. Note: 
    Data sets are from the 5th edition (Wooldridge 2013, ISBN-13:978-1-111-53104-1), 
    and are compatible with all others.
For a given Sentence-Aligned Parallel Corpus, it aligns words for each sentence pair. It considers one-to-many and symmetrization alignments. Moreover, it evaluates the quality of word alignment based on this package and some other software. It also builds an automatic dictionary of two languages based on given parallel corpus.
Tools for connecting to Wordbank, an open repository for
    developmental vocabulary data.
A fast visualization tool for creating wordcloud
    by using wordcloud2.js.
Matches words in one file with words in another file and shows index(row number) for the matches
An interface to WordNet using the Jawbone Java API to WordNet.
  WordNet (<http://wordnet.princeton.edu/>) is a large lexical database of
  English.  Nouns, verbs, adjectives and adverbs are grouped into sets of
  cognitive synonyms (synsets), each expressing a distinct concept.  Synsets
  are interlinked by means of conceptual-semantic and lexical relations.
  Please note that WordNet(R) is a registered tradename.  Princeton
  University makes WordNet available to research and commercial users
  free of charge provided the terms of their license
  (<http://wordnet.princeton.edu/wordnet/license/>) are followed, and
  proper reference is made to the project using an appropriate
  citation (<http://wordnet.princeton.edu/wordnet/citing-wordnet/>).
This package collects several classical word pools used
        most often to provide lists of words in psychological studies
        of learning and memory.
Serves for rendering MS Word documents with R inline code and inserting tables and plots.
An interactive laboratory for research on distributional semantic models ('DSM',
             see <https://en.wikipedia.org/wiki/Distributional_semantics> for more information).
Functions to import data from more than 30,000 surface
    meteorological sites around the world managed by the National Oceanic and Atmospheric Administration (NOAA) Integrated Surface
    Database (ISD, see <https://www.ncdc.noaa.gov/isd>).
Retrieves taxonomic information from  <http://www.marinespecies.org> using WoRMS' RESTful Webservice. Utility functions aim at taxonomic consistency.
Client for World Register of Marine Species 
    (<http://www.marinespecies.org/>). Includes functions for each
    of the API methods, including searching for names by name, date and
    common names, searching using external identifiers, fetching
    synonyms, as well as fetching taxonomic children and 
    taxonomic classification.
Implementing weighted predictiveness curve to visualize the marker-by-treatment relationship and measure the performance of biomarkers for guiding treatment decision.
Supplies permutation-test alternatives to traditional hypothesis-test
  procedures such as two-sample tests for means, medians, and standard deviations;
  correlation tests; tests for homogeneity and independence; and more. Suitable for
  general audiences, including individual and group users, introductory statistics
  courses, and more advanced statistics courses that desire an introduction to
  permutation tests.
Weighted Piecewise Kernel Density Estimation for large data.
Data from the United Nation's World Population Prospects 2008
Data from the United Nation's World Population Prospects
        2010
Data from the United Nation's World Population Prospects 2012
Provides data from the United Nation's World Population Prospects 2015.
Provides data from the United Nation's World Population Prospects 2017.
Explore data in the 'wpp2017' (or 2015, 2012, 2010) package using a 'shiny' interface.
Functions to assist in the processing and
    exploration of data from environmental monitoring programs.
    The package name stands for "water quality" and reflects the
    original focus on time series data for physical and chemical
    properties of water, as well as the biota. Intended for
    programs that sample approximately monthly, quarterly or
    annually at discrete stations, a feature of many legacy data
    sets. Most of the functions should be useful for analysis of
    similar-frequency time series regardless of the subject
    matter.
Fits weighted quantile sum regression models, calculates weighted quantile sum index and estimated component weights.
Supports systematic scrutiny, modification, and integration of
    data. The function status() counts rows that have missing values in 
    grouping columns (returned by na() ), have non-unique combinations of 
    grouping columns (returned by dup() ), and that are not locally sorted
    (returned by unsorted() ). Functions enumerate() and itemize() give 
    sorted unique combinations of columns, with or without occurrence counts,
    respectively. Function ignore() drops columns in x that are present in y,
    and informative() drops columns in x that are entirely NA. Data that have
    defined unique combinations of grouping values behave more predictably
    during merge operations.
Computes the pdf, cdf, quantile, random numbers  for any wrapped G distributions.  Computes maximum likelihood estimates of the parameters, standard errors, 95 percent confidence intervals, value of Cramer-von Misses statistic, value of Anderson Darling statistic, value of Kolmogorov Smirnov test statistic and its $p$-value, value of Akaike Information Criterion, value of Consistent Akaike Information Criterion, value of Bayesian Information Criterion, value of Hannan-Quinn information criterion, minimum value of the negative log-likelihood function and convergence status when the wrapped distribution is fitted  to some data.
Powerful tools for writing and debugging R code. Provides: 'let()' which converts non-standard evaluation interfaces to
    parametric standard evaluation interface, 'DebugFnW()' to capture function context on error for
    debugging, and ':=' named map builder, and lambda-abstraction.
A wrapper around Michel Scheffers's libassp (Advanced
    Speech Signal Processor). The libassp library aims at providing
    functionality for handling speech signal files in most common audio formats
    and for performing analyses common in phonetic science/speech science. This
    includes the calculation of formants, fundamental frequency, root mean
    square, auto correlation, a variety of spectral analyses, zero crossing
    rate, filtering etc. This wrapper provides R with a large subset of
    libassp's signal processing functions and provides them to the user in a
    (hopefully) user-friendly manner.
A powerful yet simple graphical tool available in the field of psychometrics is the Wright Map (also known as item maps or item-person maps), which presents the location of both respondents and items on the same scale. Wright Maps are commonly used to present the results of dichotomous or polytomous item response models. The 'WrightMap' package provides functions to create these plots from item parameters and person estimates stored as R objects. Although the package can be used in conjunction with any software used to estimate the IRT model (e.g. 'TAM', 'mirt', 'eRm' or 'IRToys' in 'R', or 'Stata', 'Mplus', etc.),  'WrightMap' features special integration with 'ConQuest' to facilitate reading and plotting its output directly.The 'wrightMap' function creates Wright Maps based on person estimates and item parameters produced by an item response analysis. The 'CQmodel' function reads output files created using 'ConQuest' software and creates a set of data frames for easy data manipulation, bundled in a 'CQmodel' object. The 'wrightMap' function can take a 'CQmodel' object as input or it can be used to create Wright Maps directly from data frames of person and item parameters.
Function for writing a SNNS pattern file from a data.frame
        or matrix.
Portable, light-weight data frame to 'xlsx' exporter based on 'libxlsxwriter'. 
    No 'Java' or 'Excel' required.
Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX)
             files from one or more data frames. Each data frame will be
             written to a separate named worksheet in the Excel spreadsheet.
             The worksheet name will be the name of the data frame it contains
             or can be specified by the user.
A collection of robust statistical methods based on Wilcox' WRS functions. It implements robust t-tests (independent and dependent samples), robust ANOVA (including between-within subject designs), quantile ANOVA, robust correlation, robust mediation, and nonparametric ANCOVA models based on robust location measures.
Contains functions for working with the Worldwide Reference System
    (WRS) 1 and 2 systems used by NASA. WRS-1 applies to Landsat 1-3, WRS-2
    applies to Landsat 4-8. The package has functions for retrieving a given
    path and row as a polygon, and for retrieving the path(s) and row(s)
    containing a given raster or vector.
Contains the Worldwide Reference System (WRS) 1 and 2 polygon
    data from NASA, for use by the wrspathrow package. WRS-1 and WRS-2
    Shape files courtesy of the U.S. Geological Survey, from
    http://landsat.usgs.gov/tools_wrs-2_shapefile.php
A collection of implementations of classical and novel
        algorithms for weighted sampling without replacement.
Includes performance measurements and results of repeated
    experiment runs (for correctness checks) for code in the
    'wrswoR' package.
An adaptation for estuaries (tidal waters) of weighted regression
    on time, discharge, and season to evaluate trends in water quality time series.
Predicts individual race/ethnicity using surname, geolocation,
    and other attributes, such as gender and age. The method utilizes the Bayes'
    Rule to compute the posterior probability of each racial category for any given
    individual. The package implements methods described in Imai and Khanna (2015)
    "Improving Ecological Inference by Predicting Individual Ethnicity from Voter
    Registration Records" <DOI:10.1093/pan/mpw001>.
Entropy weighted k-means (ewkm) is a weighted subspace
        clustering algorithm that is well suited to very high
        dimensional data. Weights are calculated as the importance of
        a variable with regard to cluster membership.  The two-level
        variable weighting clustering algorithm tw-k-means (twkm)
        introduces two types of weights, the weights on individual
        variables and the weights on variable groups, and they are
        calculated during the clustering process.  The feature group
        weighted k-means (fgkm) extends this concept by grouping
        features and weighting the group in addition to weighting
        individual features.
A parallel implementation of Weighted Subspace Random
    Forest.  The Weighted Subspace Random Forest algorithm was
    proposed in the International Journal of Data Warehousing and
    Mining by Baoxun Xu, Joshua Zhexue Huang, Graham Williams, Qiang
    Wang, and Yunming Ye (2012) <DOI:10.4018/jdwm.2012040103>.  The
    algorithm can classify very high-dimensional data with random
    forests built using small subspaces.  A novel variable weighting
    method is used for variable subspace selection in place of the
    traditional random variable sampling.This new approach is
    particularly useful in building models from high-dimensional data.
We propose weighted SVM methods with penalization form. By
        adding weights to loss term, we can build up weighted SVM
        easily and examine classification algorithm properties under
        weighted SVM. Through comparing each of test error rates, we
        conclude that our Weighted SVM with boosting has predominant
        properties than the standard SVM have, as a whole.
Perform the calculation of W-test, diagnostic checking, calculate minor allele frequency (MAF) and odds ratio.
Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks (Nowick et al. (2009) <doi:10.1073/pnas.0911376106>) given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks.
Allows form managers to download entries from their respondents
    using Wufoo JSON API (<https://www.wufoo.com>). Additionally, the Wufoo reports - when public - can be
    also acquired programmatically. Note that building new forms within this package
    is not supported.
Methods to calculate and interpret climate change signals and time series from climate multi-model ensembles. Climate model output in binary 'NetCDF' format is read in and aggregated over a specified region to a data.frame for statistical analysis. Global Circulation Models, as the 'CMIP5' simulations, can be read in the same way as Regional Climate Models, as e.g. the 'CORDEX' or 'ENSEMBLES' simulations. The package has been developed at the 'Wegener Center for Climate and Global Change' at the University of Graz, Austria.
Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.  
   Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions, 
   conditioned scatter plot with marginal densities.
   box and stem with matching theoretical distribution, and density with matching theoretical distribution.
This tool, wood vision tool, is intended to facilitate preprocessing and analyzing 2-dimensional wood images toward automated recognition. The former includes some basics such as functions to RGB to grayscale, gray to binary, cropping, rotation(bilinear), median/mean/Gaussian filter, and Canny/Sobel edge detection. The latter includes gray level co-occurrence matrix (GLCM), Haralick parameters, local binary pattern (LBP), higher order local autocorrelation (HLAC), Fourier transform (radial and azimuthal integration), and Gabor filtering. The functions are intended to read data using  'readTIFF(x,info=T)' from 'tiff' package. The functions in this packages basically assumes the grayscale images as input data, thus the color images should be subjected to the function rgb2gray() before used for some other functions.
Book is "Linear Mixed Models: A Practical Guide Using
        Statistical Software" published in 2006 by Chapman Hall / CRC
        Press
Calculate the (weighted) win loss statistics including the win ratio, win difference and win product 
 and their variances, with which the p-values are also calculated. The variance estimation is based on 
 Luo et al. (2015) <doi:10.1111/biom.12225> and Luo et al. (2017) <doi:10.1002/sim.7284>. This package also calculates general win loss statistics with 
 user-specified win loss function with variance estimation based on 
 Bebu and Lachin (2016) <doi:10.1093/biostatistics/kxv032>.
The X13-ARIMA-SEATS methodology and software is a widely used software and developed by the US Census Bureau. It can be accessed from R with this R package and X13-ARIMA-SEATS binaries are provided by the R package x13binary.
A graphical user interface for the x12 package
The US Census Bureau provides a seasonal adjustment program now
 called 'X-13ARIMA-SEATS' building on both earlier programs called X-11 and
 X-12 as well as the SEATS program by the Bank of Spain. The US Census Bureau
 offers both source and binary versions -- which this package integrates for
 use by other R packages.
Create HTML5 slides with R Markdown and the JavaScript library
    'remark.js' (<https://remarkjs.com>).
Simulation of purebred and crossbred genomic data as well as pedigree and phenotypes are possible by this package. 'xbreed' can be used for the simulation of populations with flexible genome structures and trait genetic architectures. It can also be used to evaluate breeding schemes and generate genetic data to test statistical tools.
Functions to extract business financial information from
  an Extensible Business Reporting Language ('XBRL') instance file and the
  associated collection of files that defines its 'Discoverable' Taxonomy
  Set ('DTS').
Provides a tool for extracting information (entities and relations between them) in text datasets. It also emphasizes the results exploration with graphical displays. It is a rule-based system and works with hand-made dictionaries and local grammars defined by users. 'x.ent' uses parsing with Perl functions and JavaScript to define user preferences through a browser and R to display and support analysis of the results extracted. Local grammars are defined and compiled with the tool Unitex, a tool developed by University Paris Est that supports multiple languages. See ?xconfig for an introduction.
Extensions of Exponential Random Graph Models (ERGM): Temporal Exponential Random Graph Models (TERGM), Generalized Exponential Random Graph Models (GERGM), Temporal Network Autocorrelation Models (TNAM), and Relational Event Models (REM). This package acts as a meta-package for several sub-packages on which it depends.
Datasets and definitions of generic functions used in dependencies of the 'xergm' package.
Read and write XES Files to create event log objects used by the 'bupaR' framework. XES (Extensible Event Stream) is the IEEE standard for storing and sharing event data (see <http://standards.ieee.org/findstds/standard/1849-2016.html> for more info).
Extreme Gradient Boosting, which is an efficient implementation
    of the gradient boosting framework from Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>.
    This package is its R interface. The package includes efficient linear 
    model solver and tree learning algorithms. The package can automatically 
    do parallel computation on a single machine which could be more than 10 
    times faster than existing gradient boosting packages. It supports
    various objective functions, including regression, classification and ranking.
    The package is made to be extensible, so that users are also allowed to define
    their own objectives easily.
Interface to the XGobi and XGvis programs for graphical
        data analysis.
The central goal of XGR is to provide a data interpretation system. It is designed to make a user-defined gene or SNP list (or genomic regions) more interpretable by comprehensively utilising ontology annotations and interaction networks to reveal relationships and enhance opportunities for biological discovery. XGR is unique in supporting a broad range of ontologies (including knowledge of biological and molecular functions, pathways, diseases and phenotypes - in both human and mouse) and different types of networks (including functional, physical and pathway interactions). There are two core functionalities of XGR. The first is to provide basic infrastructures for easy access to built-in ontologies and networks. The second is to support data interpretations via 1) enrichment analysis using either built-in or custom ontologies, 2) similarity analysis for calculating semantic similarity between genes (or SNPs) based on their ontology annotation profiles, 3) network analysis for identification of gene networks given a query list of (significant) genes, SNPs or genomic regions, and 4) annotation analysis for interpreting genomic regions using co-localised functional genomic annotations (such as open chromatin, epigenetic marks, TF binding sites and genomic segments) and using nearby gene annotations (by ontologies). Together with its web app, XGR aims to provide a user-friendly tool for exploring genomic relations at the gene, SNP and genomic region level.
R scripts for plotting and assessing XHMM whole-exome-sequencing-based CNV calls. XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.
Conduct the likelihood ratio tests for Hardy-Weinberg equilibrium at marker loci on the X chromosome.
Provides a simple XML tree parser/generator. It includes functions to read XML files into R objects, get information out
               of and into nodes, and write R objects back to XML code. It's not as powerful as the 'XML' package and doesn't aim to
               be, but for simple XML handling it could be useful. It was originally developed for the R GUI and IDE 'RKWard'
               <https://rkward.kde.org>, to make plugin development easier.
Plotting ggplot2 graphs using the XKCD style.
The XKCD color survey asked participants to name colours. Randall Munroe published the top thousand(roughly) names and their sRGB hex values. This package lets you use them.
Provides comprehensive functionality to read, write and format Excel data.
Provides external JAR dependencies for the XLConnect package.
Provides a tool for non linear mapping (non linear regression) using a mixture of regression model and an inverse regression strategy. The methods include the GLLiM model (see Deleforge et al (2015) <DOI:10.1007/s11222-014-9461-5>) based on Gaussian mixtures and a robust version of GLLiM, named SLLiM (see Perthame et al (2016) <https://hal.archives-ouvertes.fr/hal-01347455>) based on a mixture of Generalized Student distributions. The methods also include BLLiM (see Devijver et al (2017) <https://arxiv.org/abs/1701.07899>) which is an extension of GLLiM with a sparse block diagonal structure for large covariance matrices (particularly interesting for transcriptomic data).
Provides a simple wrapper for some 'XLConnect' functions. 'XLConnect' is
    a package that allows for reading, writing, and manipulating Microsoft Excel
    files. This package, 'xlsimple', adds some documentation and pre-defined formatting
    to the outputted Excel file. Individual sheets can include a description on the
    first row to remind user what is in the data set. Auto filters and freeze
    rows are turned on. A brief readme file is created that provides a summary
    listing of the created sheets and, where provided, the description.
Provide R functions to read/write/format Excel 2007 and Excel 97/2000/XP/2003 file formats.
The xlsxjars package collects all the external jars
  required for the xlxs package. This release corresponds to POI
  3.10.1.
Extract Excel files from folder.
    Also display extracted data and compute a summary of it.
    Based on the 'readxl' package.
A toolbox for meta-analysis. This package includes a collection of functions for (1) implementing robust multivariate meta-analysis of continuous or binary outcomes; and (2) a bivariate Egger's test for detecting publication bias.
This is Xiaobei's miscellaneous classes and functions useful when
    developing R packages, particularly for OOP using R Reference Class.
Many approaches for both reading and
        creating XML (and HTML) documents (including DTDs), both local
        and accessible via HTTP or FTP.  Also offers access to an
        'XPath' "interpreter".
Work with XML files using a simple, consistent interface. Built on
    top of the 'libxml2' C library.
XML2R is a framework that reduces the effort required to transform
    XML content into number of tables while preserving parent to child
    relationships.
Convert the output of 'utils::getParseData()' to an 'XML'
  tree, that is searchable and easier to manipulate in general.
Fit Markov Networks to a wide range of high-throughput genomics data.
Tests whether a set of counts fit a given expected ratio. For
    example, a genetic cross might be expected to produce four types in the
    relative frequencies of 9:3:3:1. To see whether a set of observed counts
    fits this expectation, one can examine all possible outcomes with xmulti() or a
    random sample of them with xmonte() and find the probability of an observation
    deviating from the expectation by at least as much as the observed. As a
    measure of deviation from the expected, one can use the log-likelihood
    ratio, the multinomial probability, or the classic chi-square statistic. A
    histogram of the test statistic can also be plotted and compared with the
    asymptotic curve.
Analysis of crossover interference in experimental crosses,
    particularly regarding the gamma model.
A complete set of functions devoted to statistical analysis of
    documents.
A collection of functions to be used as a model
    building aid for nonlinear mixed-effects (population) analysis
    using NONMEM. It facilitates data set checkout, exploration and
    visualization, model diagnostics, candidate covariate identification
    and model comparison.
Support for interfaces from R to other languages,
    built around a class for evaluators and a combination of functions, classes and
    methods for communication. Will be used through a specific language interface
    package. Described in the book "Extending R".
A Julia interface structured according to the general
	     form described in package XR and in the book "Extending R".
A Python interface structured according to the general
    form described in package XR and in the book "Extending R".
This is a set of statistical quality control functions,  that allows plotting control charts and its iterations, process capability for variable and attribute control, highlighting the xrs_gr() function, like a first iteration for variable chart, meanwhile the we_rules() function detects non random patterns in sample.
A hierarchical Bayesian approach to assess functional impact of mutations on gene expression in cancer. Given a patient-gene matrix encoding the presence/absence of a mutation, a patient-gene expression matrix encoding continuous value expression data, and a graph structure encoding whether two genes are known to be functionally related, xseq outputs: a) the probability that a recurrently mutated gene g influences gene expression across the population of patients; 
  and b) the probability that an individual mutation in gene g in an individual patient m influences expression within that patient.
An extension for the 'xml2' package to transform XML documents
    by applying an XSL stylesheet.
The circadian period of a time series data is predicted and the statistical significance of the periodicity are calculated using the chi-square periodogram.
This is the tool set for crystallographer to design and analyze crystallization experiments, especially for ribosome from Mycobacterium tuberculosis.
The 'xtensor' C++ library for numerical analysis with
 multi-dimensional array expressions is provided as a header-only
 C++14 library. It offers an extensible expression system enabling
 lazy broadcasting; an API following the idioms of the C++ standard
 library; and tools to manipulate array expressions and build upon 'xtensor'.
Can be used for coloring output in terminals.
	It was developed for the standard Ubuntu terminal but should be compatible
	with any terminal using xterm or ANSI escape sequences. If run in windows,
	RStudio, or any other platform not supporting such escape sequences it
	gracefully passes on any output without modifying it.
Contains three functions that access
    environmental data from ERD's ERDDAP service <http://coastwatch.pfeg.noaa.gov/erddap>. The xtracto() function extracts
    data along a trajectory for a given "radius" around the point. The
    xtracto_3D() function extracts data in a box. The xtractogon() function
    extracts data in a polygon. There are also two helper functions to obtain
    information about available data.
Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Calculates a number of valuation adjustments including CVA, DVA,
    FBA, FCA, MVA and KVA. A two-way margin agreement has been implemented. For
    the KVA calculation three regulatory frameworks are supported: CEM, SA-CCR and
    IMM. The probability of default is implied through the credit spreads curve.
    Currently, only IRSwaps are supported. For more information, you can check
    one of the books regarding xVA: <http://www.cvacentral.com/books/credit-value-adjustment>.
An implementation of item response theory and computer-based
    testing based on the 3-parameter-logistic (3PL) model, with functions to
    perform (i) parameter estimation, (2) automated test assembly, (3) computerized
    adaptive testing (CAT) simulation, and (4) multistage assembly and simulation.
    More documentation at <https://github.com/xluo11/xxIRT>.
A method for creating vertical histograms sharing a y-axis using
    base graphics.
High dimensional interaction search by brute force requires a
    quadratic computational cost in the number of variables. The xyz algorithm provably finds strong interactions in almost linear time.
    For details of the algorithm see: G. Thanei, N. Meinshausen and R. Shah (2016). The xyz algorithm for fast interaction search in high-dimensional data <https://arxiv.org/pdf/1610.05108v1.pdf>.
This package provides an alternative canonical
        correlation/redundancy analysis function, with associated
        print, plot, and summary methods.  A method for generating
        helio plots is also included.
Performs nearest neighbor-based imputation using one or more alternative 
 approaches to processing multivariate data. These include methods based on canonical 
 correlation analysis, canonical correspondence analysis, and a multivariate adaptation 
 of the random forest classification and regression techniques of Leo Breiman and Adele 
 Cutler. Additional methods are also offered. The package includes functions for 
 comparing the results from running alternative techniques, detecting imputation targets 
 that are notably distant from reference observations, detecting and correcting 
 for bias, bootstrapping and building ensemble imputations, and mapping results.
This is a simple wrapper for the yakmo K-Means library (developed by Naoki Yoshinaga, see http://www.tkl.iis.u-tokyo.ac.jp/~ynaga/yakmo/). It performs fast and robust (orthogonal) K-Means.
This collection of data exploration tools was developed at
    Yale University for the graphical exploration of complex
    multivariate data; barcode and gpairs now have their own
    packages.  The new big.read.table() provided here may be
    useful for large files when only a subset is needed.
Implements the 'libyaml' 'YAML' 1.1 parser and emitter (<http://pyyaml.org/wiki/LibYAML>) for R.
Contains a mixture of functions and data sets referred to in the introductory e-book "YaRrr!: The Pirate's Guide to R". The latest version of the e-book is available for free at <https://www.thepiratesguidetor.com>.
Yield curve or zero-coupon prices interpolation and extrapolation using the Nelson-Siegel, Svensson, Smith-Wilson models, and Hermite cubic splines.
Calculates cryptic scores for genes using the ratio
    (Cheung et al., 2008), the 3' enrichment method
    (DeGennaro et al., 2013) and the probabilistic
    method. It also provide	methods to estimates
    cryptic transcription start sites.
This tries to attach a package if you have it; if not, it tries to install it from BioConductor or CRAN; if not available there, it tries to install it from the cran mirror on GitHub, which includes packages that have been removed from CRAN; if not available there, it looks for a matching other package on GitHub to install. Note this is sloppy practice and prone to all sorts of risks. However, there are use cases, such as quick scripting, or in a class where students already know best practices, where this can be useful. yearn was inspired by teaching in PhyloMeth, a course funded by an NSF CAREER award to the author (NSF DEB-1453424).
Asks a custom Yes-No question with variable responses.
    The order and phrasing of the possible responses varies randomly 
    to ensure the user consciously chooses (as opposed to automatically types their response).
The purpose of this package is to provide methods to interpret multiple
  linear regression and canonical correlation results including beta weights,structure coefficients, 
  validity coefficients, product measures, relative weights, all-possible-subsets regression,
  dominance analysis, commonality analysis, and adjusted effect sizes.
Deploy, maintain, and invoke models via the Yhat
    REST API.
Modelling the yield curve with some parametric models.
        The models implemented are: Nelson-Siegel, Diebold-Li and
        Svensson.  The package also includes the data of the term
        structure of interest rate of Federal Reserve Bank and European
        Central Bank.
The clustering by k-means of using the target variable.
             To determine the number of clusters with the variance of 
             the target variable in the cluster.
Analyzing performances of cricketers and cricket teams
             based on 'yaml' match data from Cricsheet <http://cricsheet.org>.
An R implementation of Yplant, combined with the QuasiMC
    raytracer. Calculate radiation absorption, transmission and scattering,
    photosynthesis and transpiration of virtual 3D plants.
Inference procedures accommodate a flexible range of hazard ratio patterns with a two-sample semi-parametric model. This model contains the proportional hazards model and the proportional odds model as sub-models, and accommodates non-proportional hazards situations to the extreme of having crossing hazards and crossing survivor functions. Overall, this package has four major functions: 1) the parameter estimation, namely short-term and long-term hazard ratio parameters; 2) 95 percent and 90 percent point-wise confidence intervals and simultaneous confidence bands for the hazard ratio function; 3) p-value of the adaptive weighted log-rank test; 4) p-values of two lack-of-fit tests for the model. See the included "read_me_first.pdf" for brief instructions. In this version (1.1), there is no need to sort the data before applying this package.
Simple method for comparison of gene
        expression generated across different experiments, and on
        different platforms; that does not require global
        renormalization, and is not restricted to comparison of
        identical probes. YuGene works on a range of microarray dataset
        distributions, such as between manufacturers. The resulting
        output allows direct comparisons of gene expression between
        experiments and experimental platforms.
Simulation and Inference for SDEs and Other Stochastic Processes.
Provides a graphical user interface for the 'yuima' package.
Yummly.com is one of the world's largest and most powerful recipe search sites and this package aims to provide R bindings for publicly available Yummly.com Recipe API (https://developer.yummly.com/).
Principled methods for multivariate left-censoring and zeros in
    compositional data sets.
Provides a %<-% operator to perform multiple,
    unpacking, and destructuring assignment in R. The 
    operator unpacks the right-hand side of an assignment
    into multiple values and assigns these values to 
    variables on the left-hand side of the assignment.
R package accompanying the book Working with dynamic
        models for agriculture and environment, by Daniel Wallach
        (INRA), David Makowski (INRA), James W. Jones (U.of Florida),
        Francois Brun (ACTA), in preparation for June 2013.
Implements the estimation of local (and global) association measures: Ducher's Z, pointwise mutual information and normalized pointwise mutual information. The significance of local (and global) association is accessed using p-values estimated by permutations. Finally, using local association subgroup analysis, it identifies if the association between variables is dependent on the value of another variable.
A framework that brings together an abundance of common
    statistical models found across packages into a unified interface, and
    provides a common architecture for estimation and interpretation, as well
    as bridging functions to absorb increasingly more models into the
    collective library. Zelig allows each individual package, for each
    statistical model, to be accessed by a common uniformly structured call and
    set of arguments. Moreover, Zelig automates all the surrounding building
    blocks of a statistical work-flow--procedures and algorithms that may be
    essential to one user's application but which the original package
    developer did not use in their own research and might not themselves
    support. These include bootstrapping, jackknifing, and re-weighting of data.
    In particular, Zelig automatically generates predicted and simulated
    quantities of interest (such as relative risk ratios, average treatment
    effects, first differences and predicted and expected values) to interpret
    and visualize complex models.
Add-on package for Zelig 5. Enables the use of a variety of logit
    and probit regressions.
Add-on package for Zelig 5. Enables the use of a variety of
    ecological inference models.
Provides an easy way to load stable Core Zelig and ancillary Zelig
    packages.
This package provides an R wrapper for the Zendesk API
Graphical tools for visualizing high-dimensional data with a path of
 pairs.
Functions to compute compositional turnover using zeta-diversity,
    the number of species shared by multiple assemblages. The package includes
    functions to compute zeta-diversity for a specific number of
    assemblages and to compute zeta-diversity for a range of numbers of
    assemblages. It also includes functions to explain how zeta-diversity
    varies with distance and with differences in environmental variables
    between assemblages, using generalised linear models, linear models
    with negative constraints, generalised additive models,shape
    constrained additive models, and I-splines.
Performs Zoom-Focus Algorithm (ZFA) to optimize testing regions for rare variant association tests in exome sequencing data.
Computational algorithms to solve equations and find the
    compressibility factor `z` of hydrocarbon gases. Correlations available: 
    Hall-Yarborough, Dranchuk-AbuKassem, Dranchuk-Purvis-Robinson, Beggs-Brill, 
    Shell and an Artificial Neural Network correlation (Ann10) by Kamyab et al. 
    The package uses the original Standing-Katz chart for statistical comparison 
    and plotting. Applicable to sweet hyddrocarbon gases for now.
Detects abundance differences across clinical conditions. Besides, it takes the sparse nature of metagenomic data into account and handles compositional data efficiently.
Provides MCMC algorithms for the analysis of
        zero-inflated count models. The case of stochastic search
        variable selection (SVS) is also considered.  All MCMC samplers
        are coded in C++ for improved efficiency. A data set
        considering the demand for health care is provided.
Zillow, an online real estate company, provides real estate and
    mortgage data for the United States through a REST API. The ZillowR package
    provides an R function for each API service, making it easy to make API
    calls and process the response into convenient, R-friendly data structures.
    See <http://www.zillow.com/howto/api/APIOverview.htm> for the Zillow API
    Documentation.
Fits observation-driven and parameter-driven models for zero-inflated time series.
Cross-Platform 'zip' Compression Library. A replacement
    for the 'zip' function, that does not require any additional
    external tools on any platform.
This package contains a database of city, state, latitude,
        and longitude information for U.S. ZIP codes from the
        CivicSpace Database (August 2004) augmented by Daniel Coven's
        federalgovernmentzipcodes.us web site (updated January 22,
        2012). Previous versions of this package (before 1.0) were
        based solely on the CivicSpace data, so an original version of
        the CivicSpace database is also included.
Statistical models and utilities for the analysis of word frequency distributions.
	The utilities include functions for loading, manipulating and visualizing word frequency
	data and vocabulary growth curves.  The package also implements several statistical 
	models for the distribution of word frequencies in a population.  (The name of this package 
	derives from the most famous word frequency distribution, Zipf's law.)
Fit zero-inflated Poisson hidden (semi-)Markov models with or without covariates by directly minimizing the negative log likelihood function using the gradient descent algorithm. Multiple starting values should be used to avoid local minima.
Calculate and plot scattering matrix coefficients for plane waves at interface.
Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Create new analysis setups and deal with results of 
    Zonation conservation prioritization software <https://github.com/cbig/zonation-core>. 
    This package uses data available in the 'zdat' (7.7 MB) package 
    for building the vignettes.
An S3 class with methods for totally ordered indexed
             observations. It is particularly aimed at irregular time series
             of numeric vectors/matrices and factors. zoo's key design goals
             are independence of a particular index/date/time class and
             consistency with ts and base R by providing methods to extend
             standard generics.
The analysis and inference of faunal remains recovered from
    archaeological sites concerns the field of zooarchaeology. The zooaRch package
    provides analytical tools to make inferences on zooarchaeological data.
    Functions in this package allow users to read, manipulate, visualize, and
    analyze zooarchaeological data.
The analysis and inference of faunal remains recovered from
    archaeological sites concerns the field of zooarchaeology. The zooaRchGUI package
    provides a graphical user interface to analytical tools found in the R statistical environment
    to make inferences on zooarchaeological data. Functions in this package allow users to interactively
    read, manipulate, visualize, and analyze zooarchaeological data.
Tools for manipulating multivariate time series data by extending
    'zoo' class.
ZooImage is a free (open source) solution for analyzing
        digital images of zooplankton. In combination with ImageJ, a
        free image analysis system, it processes digital images,
        measures individuals, trains for automatic classification of
        taxa, and finally, measures zooplankton samples (abundances,
        total and partial size spectra or biomasses, etc.)
zm(), called with any active plot allow to enter an
    interactive session to zoom/navigate any plot. The development
    version, as well as binary releases can be found at
    https://github.com/cbarbu/R-package-zoom
Reproducible and remixable species distribution modelling. The
    package reads user submitted modules from an online repository, runs full
    SDM workflows and returns output that is fully reproducible.
Combines a forecast of a time series, using the function forecast(), with the dynamic plots from dygraphs.
Provides R bindings to the 'Zstandard' compression library.
    'Zstandard' is a real-time compression algorithm, providing high compression ratios.
    It offers a very wide range of compression / speed trade-off, while being backed by a very fast decoder.
    See <http://facebook.github.io/zstd/> for more information.
Makes zebra-striped tables (tables with alternating row colors)
    in LaTeX and HTML formats easily from a data.frame, matrix, lm, aov, anova,
    glm, coxph, nls, fitdistr, mytable and cbind.mytable objects.
Read '.xls' and '.sbj' files which are written by the
   Microsoft Windows program 'z-Tree'. The latter is a software for
   developing and carrying out economic experiments
   (see <http://www.ztree.uzh.ch/> for more information).
How fast can you type R functions on your keyboard? Find out by running a 'zty.pe' game: export R functions as instructions to type to destroy opponents vessels.
The zyp package contains an efficient implementation of Sen's slope method (Sen, 1968) plus implementation of Xuebin Zhang's (Zhang, 1999) and Yue-Pilon's (Yue, 2002) prewhitening approaches to determining trends in climate data.
Please send comments and bug reports to
ismrp@jasp.ism.ac.jp
Please send questions and comments to etiennead@gmail.com.
Please send questions and comments regarding pbdR to
RBigData@gmail.com
Please send questions and comments regarding Rcpp to
rcpp-devel@lists.r-forge.r-project.org
Please send questions and comments regarding RInside to
rcpp-devel@lists.r-forge.r-project.org
Please send questions and comments regarding timsac to
ismrp@jasp.ism.ac.jp
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Sy Han (Steven) Chiou  <schiou@d.umn.edu>
Jose Roberto Ayala Solares <ichbinjras@gmail.com>
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"Markus Loecher, Berlin School of Economics and Law (BSEL)" <markus.loecher@gmail.com>
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Rosineide Fernando da Paz <rfpaz2@gmail.com>
"Antoine Tremblay, Dalhousie University" <trea26@gmail.com>
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Euloge C. Kenne Pagui <kenne@stat.unipd.it>
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Antonio Hermes M. da Silva-Junior <hermes@ccet.ufrn.br>
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Alysha M De Livera <alyshad@unimelb.edu.au>
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Stephen L R Ellison <s.ellison@lgc.co.uk>
Cherise R. Chin Fatt <cherise.chinfatt@utdallas.edu>
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Olivier M. F. Martin <olivmrtn@gmail.com>
Maintainers are not available to give advice on using a package
they did not author.
This version is a generalisation for (v=wnl) treatments. In the
version 1.0 we used rectangular right angular (m) association
schemes with (v=2nl) and m=4,5 and 7 associated classes. The
Association schemes used in this R-package are : Rectangular
association scheme; Generalized rectangular right angular
association scheme (4); Generalized rectangular right angular
association scheme (5); Generalized rectangular right angular
association scheme (7).
Supported by internal research project ING01-1516 from
'Universidad de Playa Ancha'
This publication was prepared for NCES under Contract No.
ED-IES-12-D-0002 with American Institutes for Research. Mention
of trade names, commercial products, or organizations does not
imply endorsement by the U.S. Government.
SEVERAL PARTS ARE STILL PRELIMINARY AND MAY BE CHANGED IN THE
FUTURE. THIS TYPICALLY INCLUDES FUNCTION AND ARGUMENT NAMES, AS
WELL AS DEFAULTS FOR ARGUMENTS AND RETURN VALUES.
Several parts are still preliminary and may be changed in the
future. this typically includes function and argument names, as
well as defaults for arguments and return values.
Research funded by the Polish National Science Centre grant under
the contract number DEC-2015/19/N/HS4/00205.
The header file blaswrap.h, f2c.h and fgsg.h are from the
VisualStudio library created by Julie Langou.
Few parts are still preliminary and might be changed in the near
future. And more functions will be add as easier tools to
higher efficiency in analyzing.
This software comes with NO warranty! It is NOT intended to be
used in clinical applications! For evaluation only!
Package stable is available at http://www.robustanalysis.com
The authors are grateful to Mikhail Kanevski, Michael Leuenberger
and Carmen D. Vega Orozco for many fruitful discussions about
the use of intrinsic dimension in data mining.
Please, cite this package as: Marina Saez (2017). KarsTS: An
Interface For Karstic Time Series. R package version 1.1.
Department of Statistics, Bahauddin Zakariya University, Multan,
Pakistan.
For convenience, the package includes the necessary header files
for the Eigen distribution. (This is all that is needed to use
that functionality.) You can use an alternative installation of
Eigen on your system or the one we provide. The license for the
Eigen code is very permissive and allows us to distribute it
with this package. See http://eigen.tuxfamily.org/index.php?
title=Main_Page and also the License section on that page.
In order to use this package you need your personal Project Vote
Smart API key. To get an API-key you need to sign up for access
to PVS' API (see http://votesmart.org/share/api for details).
Whenever you are using pvsR make sure that your personal PVS
API key is saved as a character string in the variable pvs.key
(pvs.key <- "yourkey"). If there is no valid PVS API key saved
in the variable pvs.key the functions in this package won't
work. This program is free software; you can redistribute it
and/or modify it under the terms of the GNU General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later
version. This program is distributed in the hope that it will
be useful, but WITHOUT ANY WARRANTY; without even the implied
warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the GNU General Public License for more details.
More information about the system requirements can be found in
the README file.
For details and derivation, see Braumoeller, Bear F. "Guarding
Against False Positives in Qualitative Comparative Analysis."
Forthcoming, Political Analysis.
This will be used generally to communicate with HTTP servers and
specifically in the SOAP package, HTML forms and for accessing
data on Web sites that require more state information than
simply URL access (e.g. cookies).
See http://www.json.org/JSON_checker/test.zip for tests. We now
use code from the libjson project
(http://libjson.sourceforge.net).
This package allows to estimate spatial spline models to small to
middle size datasets, for larger datasets it will depend on the
memory of the system. Therefore use it carefully. Currently
under development to incorporate additive components.
The name "Scrabble" is a trademark of Hasbro, Inc. in the United
States and Canada; elsewhere, it is a trademark of Mattel.
The GPU computing version can be found soon, on following url
https://sites.google.com/site/mohamedlaibwebpage/Software.
The author acknowledges financial support from Sao Paulo Research
Foundation (FAPESP) grant 2016/18599-4
This is experimental software distributed free of charge and
comes with no warranty!  Exercise professional caution.
In version 2.4.0 of this package, a new approach to garbage
collection has been implemented and it is experimental. You can
disable it via the configuration option --enable-nodegc=no.
However, you are encouraged to use this and report problems as
the results are beneficial and being able to produce any errors
should they occur will be very helpful.
2015-01-03 19:56:29 UTC; Steven Harris Ranney
2012-06-11 14:36:21 UTC; Sophie Baillargeon
2010-01-31 13:29:31 UTC; Jens Henrik Badsberg
2016-10-16 07:32:22 UTC; Engineering Broker
2017-08-13 21:27:45 UTC; NvTomus InDemonic
2015-02-26 17:45:29 UTC; Sophie Baillargeon
2015-08-23 02:08:23 UTC; Fernando de Villar
2016-11-20 12:51:50 UTC; LARMARANGE Joseph
2016-02-23 18:10:11 UTC; LARMARANGE Joseph
2017-07-05 08:50:23 UTC; Gabriele Rovigatti
2014-08-28 18:37:46 UTC; Sophie Baillargeon
2017-01-03 15:34:03 UTC; Guybrush Threepwood
2016-07-26 19:41:07 UTC; Timothy Schwinghamer
2017-08-15 05:32:43 UTC; Aurnov Chattopadhyay
2014-10-17 18:39:03 UTC; Christiane Dargatz
2016-03-19 23:54:53 UTC; Sophie Baillargeon
Image Magick (for reading non PPM format), dcraw
(for reading RAW images).
Optionally Latte-integrale, Bertini, and Macaulay2.
Cygwin is required for each of the above for Windows users. See
INSTALL file for details.
None, but greater than 12 GB of RAM highly
recommended.
ImageMagick (http://imagemagick.org) or
GraphicsMagick (http://www.graphicsmagick.org) or LyX
(http://www.lyx.org) for saveGIF(); (PDF)LaTeX for saveLatex();
SWF Tools (http://swftools.org) for saveSWF(); FFmpeg
(http://ffmpeg.org) or avconv (https://libav.org/avconv.html)
for saveVideo()
Java JDK 1.2 or higher (for JRI/REngine JDK 1.4 or
higher), GNU make
Requires external zip utility, available in path.
On windows, it's sufficient to install RTools.
JAGS (>= 3.4.0) (see
http://mcmc-jags.sourceforge.net)
OpenCL library; single-precision AMD or Nvidia GPU;
Preferred genomic operations engine: BEDtools,
BEDOPS and Tabix.
Hugo (<https://gohugo.io>) and Pandoc
(<http://pandoc.org>)
OpenBUGS (>= 3.2.2), hence Windows or Linux
MAGeCK (=0.51, from
http://sourceforge.net/p/mageck/wiki/Home/), bowtie2
(http://bowtie-bio.sourceforge.net/bowtie2/index.shtml)
OpenCL library; double-precision AMD or Nvidia GPU;
GNU make
Python (>= 2.7.0); spaCy <https://spacy.io/> (>=
1.8); Java (>= 7.0); Stanford CoreNLP
<http://nlp.stanford.edu/software/corenlp.shtml> (>= 3.7.0)
xclip (https://github.com/astrand/xclip) or xsel
(http://www.vergenet.net/~conrad/software/xsel/) for accessing
the X11 clipboard
Java (>= 7.0); Stanford CoreNLP
<http://nlp.stanford.edu/ software/corenlp.shtml> (>= 3.5.2)
couchDB instance to connect to and work with.
nvcc (release >= 3.1) (NVIDIA Cuda Compiler
driver); Linux operating system; GNU make.
libcurl: libcurl-devel (rpm) or
libcurl4-openssl-dev (deb).
none, one or more of JAGS (>= 3.0.0), WinBUGS (>=
1.4), OpenBUGS (>= 3.2.2)
GLPK library package (e.g., libglpk-dev on
Debian/Ubuntu)
Xft or zlib (only needed for platforms other than
OSX and Windows)
Requires the OpenMP library for parallel computing.
If the OpenMP library is not available, the code is executed
sequentially and a warning is printed.
Python (>= 2.7 or >= 3.5) and elex package
python3, rPython (see file README). To make full
use of the vignette's examples you need 'pandoc'
(http://pandoc.org) installed, although it's not a requirement.
Python (>= 2.4), difflib, fuzzywuzzy ( >=0.15.0 ),
python-Levenshtein ( >=0.12.0 ). Detailed installation
instructions for each operating system can be found in the
README file.
Debian or Ubuntu system with access to Goto Blas,
Intel MKL, Atlas development build as well as a Nvidia GPU with
CUDA support
The SequenomMarkers() marker design function
requires 'vcftools' and 'Perl' on 'windows', and, in addition,
'awk' and 'bash' on '*nix'.
MongoDB (>= 3.4.0), Python (>= 2.7). Installation
instructions and links can be found in the README file.
zlib headers and library. OpenSSL headers and
library. LibSSH2 (optional on non-Windows) to enable the SSH
transport.
Compiling vignette requires JAGS
(http://mcmc-jags.sourceforge.net)
Nvidia's CUDA toolkit (>= release 5.0) and Nvidia
GPU with compute capibility >=2.0
GPGME: libgpgme11-dev (deb), gpgme-devel (rpm)
gpgme (brew). On Linux 'haveged' is recommended for generating
entropy when using the GPG key generator.
C++11 (supporting at least std=c++0x), OpenCL
shared library (provided by an SDK such as AMD/NVIDIA) and
OpenCL headers including the C++ header file (provided by
Khronos if not by SDK)
Python (>= 2.7.0) with header files and shared
library; TensorFlow (>= 1.0.0; https://www.tensorflow.org/)
libhdf5 (>= 1.8.12) with C++ interface
(--enable-cxx=yes) and v18 API enabled
Apache Hadoop >= 2.6.0
(https://hadoop.apache.org/releases.html#Download); Obsolete:
Hadoop core >= 0.19.1 and <= 1.0.3 or CDH3
(http://www.cloudera.com); standard unix tools (e.g., chmod)
ImageMagick (http://imagemagick.org) or
GraphicsMagick (http://www.graphicsmagick.org)
A C library with the fesetround/fegetround
functions.
Impala driver to support a 'DBI'-compatible R
interface
JAVA JDK 1.7 or higher for rcdk, OpenBabel (>=
2.3.1) with headers, http://openbabel.org
libsecret on Linux (libsecret-1-dev on
Debian/Ubuntu, libsecret-devel on Fedora/CentOS)
CUDA 8.0 tookit, OpenMP 4.0 capable compiler
Package vignettes based on R Markdown v2 or
reStructuredText require Pandoc (http://pandoc.org). The
function rst2pdf() require rst2pdf
(https://github.com/rst2pdf/rst2pdf).
ImageJ (>=1.48), ij.jar (see
http://imagej.nih.gov/ij/), Java (>=1.6.0)
libxml2: libxml2-dev (deb), libxml2-devel (rpm)
GNU make SAGA GIS GRASS GIS (7.x.x) Orfeo ToolBox
JAGS (>= 3.0.0) (see
http://mcmc-jags.sourceforge.net)
At least trial version of LocalSolver to be
downloaded from http://www.localsolver.com/download.html
ImageMagick++: ImageMagick-c++-devel (rpm) or
libmagick++-dev (deb)
ADMB version 11 <http://admb-project.org/> for
use.admb=TRUE; see readme.txt
Maxent.jar software, Java Runtime Environment (JRE)
JAGS (>= 4.1) for the script version, both JAGS and
GTK+ for the GUI version. For install instructions, see README
file.
MonetDB, available from http://www.monetdb.org or
MonetDBLite R package
jags (>= 4.0.0) (see
http://mcmc-jags.sourceforge.net)
A valid account MUST be registered with Microsoft's
Cognitive Services website
<https://www.microsoft.com/cognitive-services/> in order to
obtain a (free) API key. Without an API key, this package will
not work properly.
pandoc, ipython (>= 3.0) or jupyter,
ipython/jupyter notebook optional dependencies, pywin32 (on
windows)
A compiler with C++11 support for the thread
library, Requires Rtools >= 33 (i.e. R >= 3.3.0) to build on
Windows.
CUDA >= v7.0, Nvidia GPU (e.g. GeForce or Tesla)
with compute capability >= 3.0 (Kepler)
GNU make, An ODBC3 driver manager and drivers.
pandoc (http://johnmacfarlane.net/pandoc) for
exporting markdown files to other formats.
For the MERLIN wrapper, MERLIN
(http://csg.sph.umich.edu/abecasis/Merlin/) must be installed
and pointed to in the PATH environment variable.
The 'Japanese.Rnw' vignette requires uplatex and
dvipdfmx.
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. MS-MPI (Microsoft HPC Pack 2012) or MPICH2 (>=
1.4.1p1) on Windows.
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. MS-MPI (Microsoft HPC Pack 2012 R2 MS-MPI
Redistributable Package) on Windows.
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. MS-MPI (Microsoft MPI v7.1 (SDK) and Microsoft HPC
Pack 2012 R2 MS-MPI Redistributable Package) on Windows.
OpenMPI (>= 1.5.4) on Solaris, Linux and Mac.
(Parallel) HDF5 and (Parallel) NetCDF4 (4.1 or later)
libraries. No MPI library required on Windows.
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. No MPI library required on Windows yet.
ssh (OpenSSH) or plink (PuTTY) on Solaris, Linux,
and Mac.
Linux, Mac OSX, and Windows, or ZeroMQ library >=
4.0.4. Solaris 10 needs ZeroMQ library 4.0.7 and OpenCSW.
Poppler C++ interface library and headers
Phoenix NLME with Phoenix Modeling Language (PML)
license
For Windows users, Rtools (see
http://cran.r-project.org/bin/windows/Rtools/).
Python 2.7.x or Python 3.2.x-3.4.x, NumPy (Python
scientific computing package)
pandoc (>= 1.12.3) -
http://johnmacfarlane.net/pandoc
JAGS (>= 3.2.0) (see
http://mcmc-jags.sourceforge.net)
A POSIX system. Currently Linux and OS X are known
to work. GNU make.
proj 4.4.6 or higher (http://proj.maptools.org/)
pandoc (http://pandoc.org) for building Vignettes
and output reports as HTML
Pasting to clipboard requires the xclip command on
BSD and Linux or the pbcopy command on Mac OS.
Python (>= 2.7.0) with header files and shared
library (UNIX) / static library (Windows)
Qt4 libraries and headers (http://qt.nokia.com),
cmake (http://www.cmake.org)
OpenBugs for functions bugs() and openbugs() or
WinBUGS 1.4 for function bugs()
linux (>= 3.0), libapparmor-dev (optional)
A valid Bloomberg installation. The API headers and
dynamic library are downloaded from
<https://github.com/Rblp/blp> during the build step. See
<https://bloomberg.github.io/blpapi-docs/cpp/3.8> as well as
<http://www.bloomberglabs.com/api/> for API documentation. A
compiler recent enough for (at least partial) C++11 support;
g++-4.6.* or later should be sufficient and g++-4.9.* or later
is preferred.
GMP (GNU MP bignum library from
<http://gmplib.org/>)
A Debian-based system with the libapt-pkg-dev
package
A 64-bit POSIX OS such as Linux or OS X with IANA
time zone data in /usr/share/zoneinfo as well as a
recent-enough C++11 compiler (such as g++-4.9 or later which
preferred, g++-4.8 works too). On Windows the zoneinfo included
with R is used; and time parsing support is enabled via a
backport of std::get_time from the LLVM libc++ library.
A POSIX system. Currently Linux and OS X are known
to work.
A C++11 compiler. Versions 4.8.*, 4.9.* or later of
GCC will be fine.
Octave (>= 3.2.4) and its development files
GNU make, Windows: cmd.exe and cscript.exe,
Solaris: g++ is required
The hiredis library (eg via package libhiredis-dev
on Debian/Ubuntu, hiredis-devel on Fedora/RedHat, or directly
from source from https://github.com/redis/hiredis) is required.
MsgPack support is activated if the (optional) RcppMsgPack
package is detected.
C++11, Boost 1.52 or later (via BH package)
A C++11 compiler; g++ (>= 4.8.*) should be fine.
DieHarder library (>= 3.31.1) from
http://www.phy.duke.edu/~rgb/General/dieharder.php, GNU GSL for
the GSL random-number generators
mono 4.x or higher on OSX / Linux, .NET 4.x or
higher on Windows, 'msbuild' and 'nuget' available in the path
MOSEK (http://www.mosek.com) and MOSEK License for
use of Rmosek, optional use of the pogs optimizer may require
CUDA/GPU accoutrements.
Subversion for install_svn, git for install_git
for building from source: GDAL >= 1.6.3, library
from http://trac.osgeo.org/gdal/wiki/DownloadSource and PROJ.4
(proj >= 4.4.9) from http://download.osgeo.org/proj/; GDAL OSX
frameworks built by William Kyngesburye at
http://www.kyngchaos.com/ may be used for source installs on
OSX.
GEOS (>= 3.2.0); for building from source: GEOS
from http://trac.osgeo.org/geos/; GEOS OSX frameworks built by
William Kyngesburye at http://www.kyngchaos.com/ may be used
for source installs on OSX.
OpenGL, GLU Library, XQuartz (on OSX), zlib
(optional), libpng (>=1.2.9, optional), FreeType (optional),
pandoc (>=1.13.1, needed for vignettes)
R built as a shared or static library, 'MPI'
library.
Java (>= 1.5), zlib headers and library.
Oracle Java 7,Apache Kafka 2.8.0-0.8.1.1
notepad.exe, mark.exe (>= 8.0) (or mark32.exe and
mark64.exe) and rel_32.exe (see README.txt)
libmariadb-client-dev | libmariadb-client-lgpl-dev
| libmysqlclient-dev (deb), mariadb-devel (rpm), mariadb |
mysql-connector-c (brew), mysql56_dev (csw)
The tools to run 'R CMD SHLIB' on 'Fortran' code.
The used 'Fortran' compiler must support pointer initialization
which is a feature of the 2008 standard.
SYMPHONY (>= 5.6.16) libraries and headers
Oracle Instant Client or Oracle Database Client
Poppler Glib interface headers and libraries
(<http://poppler.freedesktop.org/>) [Debian/Ubuntu:
libpoppler-glib-dev, Fedora: poppler-glib-devel]
C++11, GNU make, Windows: cmd.exe and cscript.exe
ProtoBuf libraries and compiler version 2.2.0 or
later; version 3.0.0 or later is supported as well. On
Debian/Ubuntu these can be installed as libprotoc-dev and
libprotobuf-dev, while on Fedora/CentOS protobuf-devel and
protobuf-compiler are needed.
A user API key (which one can request from the
website at <http://www.pushbullet.com>), and one or more
devices to push messages to which may be any one of an (Android
or iOS) phone, a (Chrome or Firefox, or Opera or Safari)
browser or the (Windows or Mac) desktop application provided
the corresponding Pushbullet 'app' has been installed on any
one of these.
Windows, Python (>= 2.4.0), ArcGIS (>= 9.2)
Python (>= 2.7) and Python headers and libraries
(See the INSTALL file)
QuantLib library (>= 1.7.0) from
http://quantlib.org, Boost library from http://www.boost.org
need the RDRAND instruction on Intel CPU. and C
compiler must be able to compile a GNU-style in-line assembler.
NW RFC SDK downloaded from http://service.sap.com
Tcl/Tk (>= 8.5), Tktable (>= 2.9, optional)
The Boost 'program_options' library
(http://boost.org) is required.
Python (>=2.6) in path and NumPy module installed,
ghostscript (>=9.0)
ZeroMQ >= 3.0.0: libzmq3-dev (deb) or zeromq3-devel
(rpm)
GLPK library, including -dev or -devel part
zlib headers and libraries, optionally also bzip2
and POSIX-compliant regex functions.
(PDF)LaTeX (https://www.latex-project.org/) with
'pdfpages' package for studentGrowthPlot option in visualizeSGP
to bind together student growth plots into school catalogs
little-endian processor required for some functions
(see README)
pandoc (http://pandoc.org) for generating and
exporting markdown reports to other formats.
Komodo Edit (http://www.openkomodo.com), SciViews-K
(http://www.sciviews.org/SciViews-K)
Tesseract >= 3.03 (libtesseract-dev /
tesseract-devel) and Leptonica (libleptonica-dev /
leptonica-devel). On Debian you need to install the English
training data separately (tesseract-ocr-eng)
The package requires the following two components :
A C++11 compiler and on a unix OS the boost-locale headers and
libraries ( boost >= 1.55.0 , www.boost.org ). Debian/Ubuntu:
libboost-locale-dev, Fedora : yum install boost-devel, OSX/brew
: detailed installation instructions can be found in the README
file
Antiword (<http://www.winfield.demon.nl/>) for
reading MS Word files, pdfinfo and pdftotext from Poppler
(<http://poppler.freedesktop.org/>) for reading PDF
Teradata Aster Database 5.20 (AD5.20) or higher,
Teradata Aster Analytical Foundation 5.20 (AA5.20) or higher.
GNU Scientific Library version >= 1.8, C++11
PARI/GP >= 2.3.0 [strongly recommended for
logkda()]
nvcc (release >= 7.1) (NVIDIA Cuda Compiler driver)
libmagic (>= 5.14) for Unix/Linux/macOS; Rtools
3.3+ for Windows
PhantomJS (http://phantomjs.org) for taking
screenshots, ImageMagick (http://www.imagemagick.org) or
GraphicsMagick (http://www.graphicsmagick.org) and OptiPNG
(http://optipng.sourceforge.net) for manipulating images.
Java (>= 5.0); WordNet database files (direct
download:
<http://wordnetcode.princeton.edu/3.0/WNdb-3.0.tar.gz>; Debian
and Fedora package: wordnet)
Perl (>= 5.0), Unitex (>= 3.0
http://www-igm.univ-mlv.fr/~unitex/)
The standalone program xgobi must be installed
additionally, see file README, or INSTALL.windows under Windows
libxslt: libxslt1-dev (deb), libxslt-devel (rpm)
Accurate, Adaptable, and Accessible Error Metrics for Predictive
Models
Access to Abbyy Optical Character Recognition (OCR) API
Tools for Approximate Bayesian Computation (ABC)
Data Only: Tools for Approximate Bayesian Computation (ABC)
ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance
Analysis with this package
Implementation of Artificial Bee Colony (ABC) Optimization
Approximate Bayesian Computational Model for Estimating P2
Array Based CpG Region Analysis Pipeline
Approximate Bayesian Computation via Random Forests
Useful Tools for Jurimetrical Analysis Used by the Brazilian
Jurimetrics Association
Modelling Multivariate Data with Additive Bayesian Networks
Improved False Positive Control of Gene-Permuting GSEA with
Absolute Filtering
Time Resolved Simulations of Antibody Repertoires
High-Dimensional Principal Fitted Components and Abundant
Regression
Abrupt Change-Point or Aberration Detection in Point Series
Functions for Processing Minute-to-Minute Accelerometer Data
Missing Value Imputation for Accelerometer Data
Creation and Evaluation of Acceptance Sampling Plans
Data Quality Visualization Tools for Partially Accruing Data
Tools for Autoregressive Conditional Duration Models
Optimal Bayesian Experimental Design using the ACE Algorithm
ACE and AVAS for Selecting Multiple Regression Transformations
Estimating Dynamic Heritability and Twin Model Comparison
Align-and-Count Method comparisons of RFLP data
Estimation of Interpretable eQTL Effect Sizes Using a Log of
Linear Model
Implements ACME Estimator of Bird and Bat Mortality by Wind
Turbines
Affymetrix SNP Probe-Summarization using Non-Negative Matrix
Factorization
Modelling dependence with multivariate Archimax (or any
user-defined continuous) copulas
Convenience functions for analytical Customer Relationship
Management
A Cost-Minimal Regular Spanning Subgraph with TreeClust
Download, Manipulate, and Present American Community Survey and
Decennial Data from the US Census
Gene Enrichment Analysis from ACSN Maps or GMT Files
Algorithmic Complexity for Short Strings
Data Only: Algorithmic Complexity of Short Strings (Computed via
Coding Theorem Method)
A Companion Package for the Book "A Course in Statistics with R"
Asymptotic Classification Theory for Cognitive Diagnosis
Finding Cancer Driver Proteins with Enriched Mutations in
Post-Translational Modification Sites
Actuarial Functions and Heavy Tailed Distributions
A Package for Displaying Visual Scenes as They May Appear to an
Animal with Lower Acuity
The R Package Ada for Stochastic Boosting
Applies Multiclass AdaBoost.M1, SAMME and Bagging
Discrete and Global Optimization Routines
A Class of Adaptive Elastic Net Methods for Censored Data
Implementation of an Accountable Data Analysis Process
Adaptive Semiparametric Regression with Simultaneous Confidence
Bands
Implementation of a Generic Adaptive Monte Carlo Markov Chain
Sampler
Binomial and Multinomial Additive Hazards Models
Fit Additive Hazards Models for Survival Analysis
Discover and Install Useful RStudio Addins
Additive Data Envelopment Analysis Models
Additivity Tests in the Two Way Anova with Single Sub-class
Numbers
Analysis of Accelerated Destructive Degradation Test Data
Analysis of Ecological Data : Exploratory and Euclidean Methods
in Environmental Sciences
Adaptive Density Estimation by Bayesian Averaging
Exploratory Analysis of Genetic and Genomic Data
An S4 Lattice-Based Package for the Representation of
Multivariate Data
Analysis of Habitat Selection by Animals
Adephylo: Exploratory Analyses for the Phylogenetic Comparative
Method
A Shiny Application for the (Audio-)Visualization of Adverse
Event Profiles
Adequacy of Probabilistic Models and General Purpose
Optimization
Calculate Ad Hoc Distance Thresholds for DNA Barcoding
Identification
Adjusted Bayesian Quantile Regression Inference
An Interpretation of the ADM method - automated detection
algorithm
Adaptive Mixture of Student-t Distributions
Admixture Graph Manipulation and Fitting
Regularized Model with Selecting the Number of Non-Zeros
Fast Clustering Using Adaptive Density Peak Detection
Use Least Squares Polynomial Regression and Statistical Testing
to Improve Savitzky-Golay
Upper Clopper-Pearson Confidence Limits for Burn-in Studies
under Additional Available Information
Wavelet Analysis of Genomic Data from Admixed Populations
Change Point Analysis in ARIMA Forecasting
Download and Process AEMO Price and Demand Data
Model-Based Estimation of Confounder-Adjusted Attributable
Fractions
Hybrid Simulation and Genome Scan for Dominant Markers
Functions for Atomic Force Microscope Force-Distance Curves
Analysis
Tools for Modelling of Animal Flight Performance
Accelerated Failure Time Model with Generalized Estimating
Equations
Aggregate Numeric, Date and Categorical Variables by an ID
Aggregation Operators and Preordered Sets
Statistical Tools for Measuring Agreement
Statistical Procedures for Agricultural Research
Calculate Agreement or Consensus in Ordered Rating Scales
Estimation in Adaptive Group Sequential Trials
Miscellaneous plotting and utility functions
Regularization for semiparametric additive hazards regression
Functions and Data for the Book 'Applied Hierarchical Modeling
in Ecology'
An Implementation of the Artificial Hydrocarbon Networks
Fast Searching for Multiple Keywords in Multiple Texts
Estimation and Testing of Average Hazard Ratios
Model Selection and Multimodel Inference Based on (Q)AIC(c)
Tools for reading AIDA (http://aida.freehep.org/) files into R
Suite of GR Hydrological Models for Precipitation-Runoff
Modelling
Interpolation of Irregularly and Regularly Spaced Data
Adaptive Kmeans algorithm based on threshold
Atlas of Living Australia (ALA) Data and Resources in R
Immunoglobulin Clonal Lineage and Diversity Analysis
Quantile Regression Using Asymmetric Laplace Distribution
Estimating Absolute Protein Quantities from Label-Free LC-MS/MS
Proteomics Data
Downloading Time Series from ALFRED Database for Various
Vintages
Haplotype Two Snips Out of a Paired Group of Patients
Allows you to Easily Interact with the Algorithmia Platform
Comparison of Alternative Multiple Sequence Alignments
Alignment of Phonetic Sequences Using the 'ALINE' Algorithm
Generate Age-Length Keys for fish populations
Allele Imputation and Haplotype Reconstruction from Pedigree
Databases
Identifying unique multilocus genotypes where genotyping error
and missing data may be present
Allele Retention, Inbreeding, and Demography
A fast, unbiased and exact allelic exact test
Computes all of a word's possible spellings
Algorithms for High-Throughput Sequencing of Antigen-Specific T
Cells
Generalization of the Convex Hull of a Sample of Points in the
Plane
Obtain Alpha-Outlier Regions for Well-Known Probability
Distributions
Implementation of the 3D Alpha-Shape for the Reconstruction of
3D Sets from a Point Cloud
Lightweight R Interface to the Alpha Vantage API
Data to accompany Applied Linear Regression 3rd edition
Data to accompany Applied Linear Regression 4rd edition
Multivariate Curve Resolution Alternating Least Squares
(MCR-ALS)
Accelerated line search algorithm for simultaneous orthogonal
transformation of several positive definite symmetric matrices
to nearly diagonal form
Companion to Applied Linear Statistical Models
An 'API' Client for the 'Alteryx' Gallery
Optimal Experimental Designs for Accelerated Life Testing
Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
Generate LaTeX Code for Auto-Multiple-Choice (AMC)
European Commission Annual Macro-Economic (AMECO) Database
Adaptive Management of Epidemiological Interventions
Additive and Multiplicative Effects Models for Networks and
Relational Data
This package includes pricing function for selected American
call options with underlying assets that generate payouts
A Multidirectional Optimum Ecotope-Based Algorithm
Generates Samples or Complete List of Brazilian IBGE (Instituto
Brasileiro De Geografia e Estatistica) Census Households,
Geocoding it by Google Maps
An Algorithm for Automatic Peak Detection in Noisy Periodic and
Quasi-Periodic Signals
Statistical Analysis of Amplicon Data of the Same Sample to
Identify Artefacts
Simple and Canonical Correspondence Analysis
Analogue and Weighted Averaging Methods for Palaeoecology
Additional Functions for Use with the Analogue Package
Regression Outlier Detection, Stationary Bootstrap, Testing Weak
Stationarity, and Other Tools for Data Analysis
Model Layer for Automatic Data Analysis via CSV File
Interpretation
Functions for analysis of fMRI datasets stored in the ANALYZE or
NIFTI format
Assigning Ancestry Based on Population References
Post-Processing for the Method of Anchored Distributions
Statistical analysis of surveys with anchoring vignettes
An extended Bayesian Learning Technique developed by Dr. Geoff
Webb
Adaptive Neuro Fuzzy Inference System in R
Simulate a Bus Route Creel Survey of Anglers
Tools for 'ROMS' the Regional Ocean Modeling System
Inferring Dominance Hierarchies and Estimating Uncertainty
Animal track reconstruction for high frequency 2-dimensional
(2D) or 3-dimensional (3D) movement data
A Gallery of Animations in Statistics and Utilities to Create
Animations
Compute High Dimensional Orthant Probabilities
Extract Subsequences from GenBank Annotations
AnnotLists: A tool to annotate multiple lists from a specific
annotation file
A Non-Parametric Statistical Test to Compare Clustering
Structures
Implementation of Augmented Network Log Anomaly Detection
Procedures
Anonymize Data Containing Personally Identifiable Information
Test ANOVA Replications by Means of the Prior Predictive p-Value
Import, Manipulate and Explore the Results of an Antares
Simulation
A Shiny GUI for Smith's Mean Measure of Divergence (MMD)
Statistical Methods for Anthropometric Data
Extract Text from Microsoft Word Documents
Anything to 'POSIXct' or 'Date' Converter
Analysis of Overdispersed Data using S3 methods
aoristic analysis with spatial output (kml)
Format Outputs of Statistical Tests According to APA Guidelines
Create American Psychological Association (APA) Style Tables
An Implementation of the Additive Polynomial Design Matrix
Apercu is Giving you a Quick Look at your Data
Phylogenetic Methods for Multiple Gene Data
Analysis with Profile Hidden Markov Models
Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic
Regression" (3rd Ed., 2013)
Another Plot PACKage: stem.leaf, bagplot, faces, spin3R,
plotsummary, plothulls, and some slider functions
Augmented and Penalized Minimization Method L0
Pre- and Postprocessing for AP-MS data analysis based on
spectral counts
Compute Appell's F1 hypergeometric function
Approximate Path for Penalized Likelihood Estimators
Functions and Data Sets for 'Applied Predictive Modeling'
Amyloid Propensity Prediction Neural Network
Bayesian prediction of complex computer codes
Datasets from Draper and Smith "Applied Regression Analysis"
(3rd Ed., 1998)
Tools for the a Priori Comparison of Regression Modelling
Strategies
Amdahl's Profiler, Directed Optimization Made Easy
General Utility Functions for the 'Agricultural Production
Systems Simulator'
Edit, Run and Evaluate APSIM Simulations Easily Using R
apsrtable model-output formatter for social science
Average Positive Predictive Values (AP) for Binary Outcomes and
Censored Event Times
Functions to help display air quality model output and
monitoring data
Interface methods to use with an ActiveQuant Master Server
Integrated Development Toolbox for Aquatic Chemical Model
Generation
Another Look at the Acceptance-Rejection Method
Segmentation of an autoregressive Gaussian process of order 1
Rigorous Data Reduction and Error Propagation of Ar40 / Ar39
Data
Fitting Univariate Censored Linear Regression Model with
Autoregressive Errors
Post-Processing of the Markov Chain Simulated by 'ChronoModel',
'Oxcal' or 'BCal'
Example Datasets from Archaeological Research
Plant Root System Architecture Analysis Using DART and RSML
Files
Tools for Storing, Restoring and Searching for R Objects
Tools for Archiving, Managing and Sharing R Objects via GitHub
Activated Region Fitting, fMRI data analysis (3D)
Fractional ARIMA (and Other Long Memory) Time Series Modeling
Arfima-MLM Estimation For Repeated Cross-Sectional Data
Command Line Optional and Positional Argument Parser
Improved Communication to Users with Respect to Problems in
Function Arguments
Data Analysis Using Regression and Multilevel/Hierarchical
Models
Analysis of Large Affymetrix Microarray Data Sets
A Probe-Level Data File Format Used by 'aroma.affymetrix'
[deprecated]
Copy-Number Analysis of Large Microarray Data Sets
Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework
Tools for Simulating Direct Behavioral Observation Recording
Procedures Based on Alternating Renewal Processes
Apply a Function to a Margin of an Array
An Arsenal of 'R' Functions for Large-Scale Statistical
Summaries
Aligned Rank Transform for Nonparametric Factorial Analysis
Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme
VArying) Model
Gene and Pathway p-values computed using the Adaptive Rank
Truncated Product
Mining Association Rules and Frequent Itemsets
Classification Based on Association Rules
Mining NB-Frequent Itemsets and NB-Precise Rules
Visualizing Association Rules and Frequent Itemsets
Data Sets for "Applied Survival Analysis Using R""
A Collection of Statistical Tools for Biologists
Export R objects to several markup languages
Reads 'SPSS' and 'SAS' Files from ASCII Data Files (.txt) and
Setup Files (.sps or .sas)
Assign Random Colors to Unique Items in a Vector
Simulations for Adaptive Seamless Designs
Methods for Adaptive Shrinkage, using Empirical Bayes
Interface to the Algorithm Selection Benchmark Library
Linkage Map Construction using the MSTmap Algorithm
Animal Social Network Inference and Permutations for Ecologists
A collection of functions for estimating centrographic
statistics and computational geometries for spatial point
patterns
Bayesian Inference on Causal Genetic Variants using Affected
Sib-Pairs Data
An Adaptive Sum of Powered Correlation Test (aSPC) for Global
Association Between Two Random Vectors
A General Framework for Multivariate Analysis with Optimal
Scaling
Analysis of Symmetry of Parasitic Infections
Augments the Use of 'ASReml-R' in Fitting Mixed Models
Detection and Correction of Spatial Bias in HTS Screens
Verbose Assertions for Tabular Data (Data.frames and
Data.tables)
Readable Check Functions to Ensure Code Integrity
A Lightweight Core of the 'assertive' Package
Assertions to Check Properties of Strings
Assertions to Check Properties of Dates and Times
Assertions to Check Properties of Matrices
Assertions to Check Properties of Models
Assertions to Check Properties of Numbers
Assertions to Check Properties of Variables
Assertive Programming for R Analysis Pipelines
Optimal pricing of assets with fixed expiry date
Population Assignment using Genetic, Non-Genetic or Integrated
Data in a Machine Learning Framework
A Suite of R Functions Implementing Spline Smoothing Techniques
Adaptive Subgroup Selection in Group Sequential Trials
Implements New and Existing Association Indices for Constructing
Animal Social Networks
Calculate the Assortativity Coefficient of Weighted and Binary
Networks
Statistical Tests for Genetic Association Studies
A Computational Tool for Astrochronology
Astronomy: time and position functions, misc. utilities
Applied Statistical Time Series Analysis
Average Shifted Visual Predictive Checks
Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic
Data
Regression Analysis of Sparse Asynchronous Longitudinal Data
Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
Inference for Average Treatment Effects using Covariate
Balancing
A GTK GUI for teaching basic concepts in statistical inference,
and doing elementary bayesian tests
Process and Visualise Output from Atlantis Models
Automatically Tuned Markov Chain Monte Carlo
Acoustic Traveltime Calculations for 1-D Atmospheric Models
Support Querying Axibase Time-Series Database
Tools for Attribute VSI CUSUM Control Chart
Threshold independent performance measures for probabilistic
classifiers
Variable Selection with Random Forest and the Area Under the
Curve
Generates PFA Documents from R Code and Optionally Runs Them
Creates a Neighbourhood Using Locality Sensitive Hashing for
Gaussian Projections
Approximate Unconditional and Permutation Tests
Learning to Rank Bagging Workflows with Metalearning
An Interface to the 'AutoDesk' 'API' Platform
Sparse Autoencoder for Automatic Learning of Representative
Features from Unlabeled Data
Multiple Heat Maps for Projected Coordinates
Automagically Document and Install Packages Necessary to Run R
Code
Automated Hierarchical Multiple Regression with Assumptions
Checking
Autologistic and Automultinomial Spatial Regression and Variable
Selection
Automatic Variable Reduction Using Principal Component Analysis
Development of Visualization Tools for Protein Sequence
Partial Least Squares Regression with Backward Selection of
Predictors
Minimum Distance Estimation in Autoregressive Model
Performs Specification Search in Structural Equation Models
An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Automated Vector Autoregression Models and Networks
Calculation of Average Population Attributable Fractions and
Confidence Intervals
Adaptation of Virtual Twins Method from Jared Foster
Amazon 'Kinesis' Consumer Application for Stream Processing
A Simple Client to the 'AWS' Key Management Service
Client for the Amazon Alexa Web Information Services API
Boilerplate R Access to the Amazon Web Services ('AWS') Java SDK
Class and Methods Definitions for Packages 'aws', 'adimpro',
'fmri', 'dwi'
Interface with Azure Machine Learning Datasets, Experiments and
Web Services
Adaptive differential evolution, b6e6rl variant
Bayesian Bacterial Growth Curve Analysis in R
Bayesian Bootstrap Predictive Mean Matching - Multiple and
Single Imputation for Discrete Data
Bubble Chart to Compare Biological Annotations by using DAVID
Modeling Framework for Cellular Communities in their
Environments
Bayesian Analysis of Computer Code Output (BACCO)
Bayesian Augmented Control for Clinical Trials
Reimplementations of Functions Introduced Since R-3.0.0
Learning Causal Cyclic Graphs from Unknown Shift Interventions
Exploring Portfolio-Based Conjectures About Financial
Instruments
Choice of the Hyperparameter Omega in the Bayesian Adjustment
for Confounding (BAC) Algorithm
Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in
Github Readme
Bayesian Average Error approach to Sample Size Determination
Ensemble bagging and boosting classifiers
Bayesian Analysis of Item Response Theory Models
Library Driven Compound Profiling in Gas Chromatography - Mass
Spectrometry Data
Balance Check for Multiple Covariates in Matched Observational
Studies
Balanced and Spatially Balanced Sampling
Functions and Datasets for Books by Jeff Gill
Protein Secondary Structure Prediction Using the Bamboo Method
Bayesian Meta-Analysis of Diagnostic Test Data
Bayesian Additive Models for Location Scale and Shape (and
Beyond)
Analysis and Visualization of Macroevolutionary Dynamics on
Phylogenetic Trees
Functions for simple A/B split test and multi-armed bandit
analysis
Make Banner Comments with a Consistent Format
Batch Effect Removal and Addon Normalization (in Phenotype
Prediction using Gene Data)
Bayesian Prediction of Stochastic Processes
Species Identification using DNA Barcodes
Regularized Wasserstein Distances and Barycenters
Bayesian Model Averaging using Bayesian Adaptive Sampling
Fast and URL-Safe Base64 Encoder and Decoder
Sabermetrics and Advanced Baseball Statistics
Infrastructure for Computing with Basis Functions
Age-Specific Survival Analysis from Incomplete
Capture-Recapture/Recovery Data
Big Data Statistical Analysis for High-Dimensional Models
Batching Routines in Parallel and Passing Command-Line Arguments
to R
Statistical Experiments on Batch Computing Clusters
Downloads and Organizes Financial Data for Multiple Tickers
Software for the Creation of High Density Linkage Maps in
Outcrossing Species
Consistent Batch Means Estimation of Monte Carlo Standard Errors
Bayesian Tensor Factorization Linked to External Data
Convert Categorical Representations of Logicals to Actual
Logicals
An R Package for Data Reduction by Battery Reduction
Bayesian Feature Allocation Model for Tumor Heterogeneity
Bayesian Estimation of Mixtures of Multivariate Bernoulli
Distributions
Miscellaneous Functions for Bioinformatics and Bayesian
Statistics
An Implementation of Rubin's (1981) Bayesian Bootstrap
Bayesian Inference on a GPU using OpenCL
Power Calculations and Bayesian Analysis of Count Distributions
and FECRT Data using MCMC
Bayesian Analysis of Censored Regression Models Under Scale
Mixture of Skew Normal Distributions
Functions and Datasets for the book "Bayesian Data Analysis"
The Bayesian Dynamic Conditional Correlation GARCH Model
Graphical User Interface for bayesTFR, bayesLife and bayesPop
Tools for the Bayesian Discount Prior Function
Computation of Bayes Factors for Common Designs
Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations
Scalable Rejection Sampling for Bayesian Hierarchical Models
Bayesian Analysis of Generalized Elliptical Semi-Parametric
Models and Flexible Measurement Error Models
Bayesian Regression Model with Mixture of Two Scaled Inverse Chi
Square as Hyperprior
Bayesian Melding of GPS and DR Path for Animal Tracking
Bayesian Beta regression: joint mean and precision modeling
Bayesian Estimation of the ETAS Model for Earthquake Occurrences
General-Purpose MCMC and SMC Samplers and Tools for Bayesian
Statistics
Bayesian Methods for Image Segmentation using a Potts Model
Efficient Sampling for Gaussian Linear Regression with Arbitrary
Priors
Bayesian Analysis of Contingency Table Data
Adjust Longitudinal Regression Models Using Bayesian Methodology
Designing Bayesian Multi-Arm Multi-Stage Studies
Mixtures-of-Experts Markov Chain Clustering and Dirichlet
Multinomial Clustering
Default Bayesian Hypothesis Tests for Correlation, Partial
Correlation, and Mediation
Bayesian Mixture Survival Models using Additive
Mixture-of-Weibull Hazards, with Lasso Shrinkage and
Stratification
BayesNI: Bayesian Testing Procedure for Noninferiority with
Binary Endpoints
Variable Selection in a Hierarchical Bayesian Model for a Hazard
Function
Hierarchical Bayesian Model for a Hazard Function
Hierarchical Bayesian analysis of ecological count data
Bayesian Regression Models with Continuous Shrinkage Priors
Bayesian Variable Selection Using Simplified Shotgun Stochastic
Search with Screening (S5)
Bayesian Analysis of Small Area Estimation
Computation of Bayes factors for interrupted time-series designs
MCMC Sampling of Bayesian Linear Models via Summary Statistics
Bayesian Survival Regression with Flexible Error and Random
Effects Distributions
Bayesian thresholds mixed-effects models for categorical data
Bayesian Analysis of Item-Level Twin Data
Bayes Factors, Model Choice and Variable Selection in Linear
Models
R Utilities Accompanying the Software Package BayesX
R Package Distribution of the BayesX C++ Sources
Bayesian analysis of haplotype association using Markov Chain
Monte Carlo
R Functions for Bayesian Hazard Rate Estimation
R Package for Baylor University Educational Psychology
Quantitative Courses
Chronological Bayesian Models Integrating Optically Stimulated
Luminescence and Radiocarbon Age Dating
Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
Bayesian Analysis of Significantly Mutated Genes in Cancer
On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
Solving and Optimizing Large-Scale Nonlinear Systems
Bayesian bandwidth estimation and semi-metric selection for the
functional kernel regression with unknown error density
Bayesian bandwidth estimation for multivariate kernel regression
with Gaussian error
Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
Miscellaneous Helper Functions for B. Bischl
Tools for General Maximum Likelihood Estimation
Models for Continuous Traits Evolving in Macroevolutionary
Landscapes of any Shape
Gene Regulatory Network Inference with Bc3net
Bias-Corrected Bayesian Classification with Selected Features
Calculation of Option Prices Based on a Universal Solution
Business Cycle Dating and Plotting Tools
Bayesian composition estimator: estimating sample (taxonomic)
composition from biomarker data
The Bayesian Causal Effect Estimation Algorithm
B Cell Receptor Somatic Hyper Mutation Analysis
Bayesian Models for Cost-Effectiveness Analysis in the Presence
of Structural Zero Costs
Bias-Corrected Estimates for Generalized Linear Models for
Dependent Data
Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
Estimation, and Non-Parametric Phase Modelling
Bayesian Palaeoclimate Reconstruction from Pollen Data
Bayesian Hierarchical Clustering Using Spike and Slab Models
Bayesian Analysis of Change Point Problems
Behavioral change point analysis of animal movement
Bayesian Multiple Changepoint Detection Using Metadata
Advanced Analysis of B Cell Receptor Repertoire Data
Bayesian Continual Reassessment Method for Phase I
Dose-Escalation Trials
Bias-Corrected Methods for Estimating the ROC Surface of
Continuous Diagnostic Tests
Bayesian Compressive Sensing Using Laplace Priors
A Bayesian Semiparametric Factor Analysis Model for Subtype
Identification (Clustering)
Cross-Validation for the SVD (Bi-Cross-Validation)
Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Transparent and Reproducible Artificial Data Generation
Optimisation of Bayesian Decision Problems
Inference and design for predictive values in binary diagnostic
tests
Remove Weekends and Holidays from ggplot2 Axes
Routines for Block Diagonal Symmetric matrices
Bayesian Inference for Discrete Weibull Regression
Biometric Exploratory Analysis Creation House
Analysis of Illumina BeadArray SNP data including MSV markers
Visualization via Beanplots (like Boxplot/Stripchart/Violin
Plot)
Bayesian Analysis of Heterogeneous Treatment Effect
Quantifies effects of geo/eco distance on genetic
differentiation
Extract Genotypes from a PLINK .bed File
Genomic Region Processing using Tools Such as BEDtools, BEDOPS
and Tabix
Easily Play Notification Sounds on any Platform
The Bee Swarm Plot, an Alternative to Stripchart
Download Historical Data from the Belgrade Stock Exchange
28 benchmark densities from Berlinet/Devroye (1994)
Benchmark and Frontier Analysis Using DEA and SFA
High Precise Measurement of R Expressions Execution Time
Benford Analysis for Data Validation and Forensic Analytics
Statistical Tests for Evaluating Conformity to Benford's Law
Bent-Cable Regression for Independent Data or Autoregressive
Time Series
Bayesian Exponential Random Graph Models
Function Collection Related to Plotting and Hydrology
Best Subset Selection for Sparse Generalized Linear Model and
Cox Model
Bessel -- Bessel Functions Computations and Approximations
Bayesian Estimation Supersedes the t-Test
Mini Games from Adventures of Beta and Bit
Detecting rare variants for quantitative traits using nuclear
families
Partitioning Beta Diversity into Turnover and Nestedness
Components
Functions to incorporate taxonomic uncertainty on multivariate
analyses of ecological data
Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH
Models
Bayesian Evaluation of Variant Involvement in Mendelian Disease
Bayesian Spectral Inference for Stationary Time Series
Breaks For Additive Season and Trend (BFAST)
A Suite of Packages for Analysis of Big Genomic Data
Binary Generalized Extreme Value Additive Models
Bayesian Estimation in Generalized Linear Models
Example BGM Files for the Atlantis Ecosystem Model
Gaussian Mixture Modeling Algorithms and the Belief-Based
Mixture Modeling
Markov Beta and Gamma Processes for Modeling Hazard Rates
Block Gibbs Sampler with Incomplete Multinomial Distribution
Bayesian Group Sparse Multi-Task Regression
Useful Functions for Box, Hunter and Hunter II
Bayesian Hierarchical Multi-Subject Multiscale Analysis of
Functional MRI Data
Uncertainty Quantified Matrix Completion using Bayesian
Hierarchical Matrix Factorization
Bias correction of the parameter estimates of the beta
regression model
R Wrapper for Java Implementation of BiBit
An R-Tool for Comprehensive Science Mapping Analysis
Reading Mass Spectrometric Search Results
Maximal Biclique Enumeration in Bipartite Graphs
Bayesian Inference for Directed Acyclic Graphs (BiDAG)
Calculates the bidimensional regression between two 2D
configurations
Tools for Accessing the Botanical Information and Ecology
Network Database
Inferences for bi- and trifactorial trial designs
Tools for Survey Statistics in Educational Assessment
BLAS routines for native R matrices and big.matrix objects
Utilities for 'big.matrix' Objects from Package 'bigmemory'
Case-Control Analysis of Multi-Allelic Loci
Fast Linear Models for Objects from the 'bigmemory' Package
Optimized Kernel Regularized Least Squares
Biochemically Intuitive Generalized Loewe Model
Scalable Least-Angle Regression and Lasso
Extending Lasso Model Fitting to Big Data
bounded memory linear and generalized linear models
Manage Massive Matrices with Shared Memory and Memory-Mapped
Files
A shared resource interface for Bigmemory Project packages
PCA, Transpose and Multicore Functionality for 'big.matrix'
Objects
Interface with Google BigQuery with Shiny Compatibility
Big Quadratic Inverse Covariance Estimation
Generalized Linear Models (GLM) for Large Data Sets
An Interface to Google's 'BigQuery' 'API'
Generalized Ridge Regression (with special advantage for p >> n
cases)
Constructing Large Systems of Structural Equations
Statistical Tools for Filebacked Big Matrices
Table, Apply, and Split Functionality for Matrix and
'big.matrix' Objects
Nonparametric Analysis of Bivariate Gap Time with Competing
Risks
Top Scoring Pair based methods for classification
Dimension Reduction Methods for Multivariate Time Series
Download and Aggregate Data from Public Hire Bicycle Systems
Contains Data of Billboard Hot 100 Songs
Create Interactive Chart with the JavaScript 'Billboard' Library
Power for SNP analyses using silver standard cases
Estimates Mixture Models for Case-Control Data
Threshold Cut Point of Probability for a Binary Classifier Model
Variable Selection for Binary Data Using the EM Algorithm
Mean and Variance Modeling of Binary Data
Multi-Class Discriminant Analysis using Binary Predictors
Methods for Analyzing Binned Income Data
Evaluation and experimental design for binomial group testing
Asymptotic simultaneous confidence intervals for many-to-one
comparisons of proportions
Data Generation with Binary and Continuous Non-Normal Components
Simultaneous Generation of Multivariate Binary and Normal
Variates
Binomial Confidence Intervals For Several Parameterizations
'Taxonomic' Specification and Parsing Methods
Generates binomial random numbers via the coupling from the past
algorithm
Efficient MCMC for Binomial Logit Models
Confidence Intervals and Sample Size Determination for a
Binomial Proportion under Simple Random Sampling and Pooled
Sampling
Performing diagnostics on binomial regression models
Concurrent Generation of Binary, Ordinal and Continuous Data
Cut Numeric Values into Evenly Distributed Groups
Exact Binary Sequential Designs and Analysis
Data Preprocessing, Binning for Classification and Regression
Feature Selection and Classification with the Embedded
Validation Procedures for Biomedical Data Analysis
Package for Community Ecology and Suitability Analysis
Multilevel Modeling of Dendroclimatical Fluctuations
Biodiversity Assessment Using Functional Tools
Process Biogas Data and Predict Biogas Production
Point Data Quality Assessment and Coordinate Conversion
BioGeography with Bayesian (and Likelihood) Evolutionary
Analysis in R Scripts
Simulation of Dynamic Microbial Inactivation
Predict environmental conditions from biological observations
Create Hyperlinks to Biological Databases and Resources
Modelling and Forecasting Biological Invasions
Find Biomarkers in Two-Class Discrimination Problems
Estimating Aboveground Biomass and Its Uncertainty in Tropical
Forests
Ensemble Platform for Species Distribution Modeling
Utilities for the BIOM (Biological Observation Matrix) Format
Sensitivity Analysis and Optimum Experiment Design for Microbial
Inactivation
Visualization of Overlapping Results with Heatmap
Simulation of deterministic and stochastic biochemical reaction
networks using Petri Nets
Search and Download Papers from the bioRxiv Preprint Server
From Biological Sequences and Simulations to Correlation
Analysis
From BIOlogical Sequences to MultiDimensional Scaling
Tools for Electromyogram Signals (EMG) Analysis
Biomarker Selection in Penalized Regression Models
Calculation of Freshwater Biotic Indices
Tools for Biometry and Applied Statistics in Agricultural
Science
Visualising Bipartite Networks and Calculating Some (Ecological)
Indices
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
BIPOD (Bayesian Inference for Partially Observed diffusions)
Methods to Analyse Ring Re-Encounter Data
Tools to find bad commits with git bisect
Toolkit to Identify Candidate Synthetic Lethality
Bayesian Isotonic Regression with Bernstein Polynomials
A S3 Class for Vectors of 64bit Integers
Binarization and Trinarization of One-Dimensional Data
Bayesian Inference of Transmission Routes Using Genome Sequences
Estimating the Parameters of Some Bivariate Distributions
Sample size calculations for bivariate longitudinal data
Tolerance Intervals and Errors-in-Variables Regressions in
Method Comparison Studies
Bivariate Residual Plots with Simulation Polygons
Generation of Bivariate Uniform Data and Its Relation to
Bivariate Binary Data
Conduct Univariate and Bivariate Wavelet Analyses
Functions to compute the biweight mean vector and covariance &
correlation matrices
Business Days Calculations and Utilities
Black Box Optimization and Exploration of Parameter Space
Plots (Slightly Extended) Bland-Altman Plots
Calculate and Analyze Blau Status for (Covert) Organizations
Black-Litterman and Copula Opinion Pooling Frameworks
A New Link Function that Blends Two Specified Link Functions
Analyze biotic homogenization of landscapes
Record Linkage for Empirically Motivated Priors
Data Exploration with Multiple Machine Learning Algorithms
Fitting block ERGM given the block structure on social networks
Binomial linear and linear-expit regression
Data Files and Functions Accompanying the Book "Bayesian Data
Analysis in Ecology using R, BUGS and Stan"
A Simple S3 Class for Representing Vectors of Binary Data
('BLOBS')
Coclustering Package for Binary, Categorical, Contingency and
Continuous Data-Sets
blockmatrix: Tools to solve algebraic systems with partitioned
matrices
Creates strings that show a text message in 8 by 8 block letters
An R Package for Generalized and Classical Blockmodeling of
Valued Networks
Latent and Stochastic Block Model Estimation by a 'V-EM'
Algorithm
Randomization for block random clinical trials
Nested and Crossed Block Designs for Factorial, Fractional
Factorial and Unstructured Treatment Sets
Block, Assign, and Diagnose Potential Interference in Randomized
Experiments
Create Blogs and Websites with R Markdown
Statistical Comparisons with Distance-Function Based Permutation
Tests
Request Data from the U.S. Bureau of Labor Statistics API
An API Wrapper for the Bureau of Labor Statistics (BLS)
Multivariate Extremes: Bayesian Estimation of the Spectral
Measure
Benchmark dose analysis for dose-response data
Mediation analysis with missing data using bootstrap
Hybrid Trait Evolution under Brownian Motion
Miscellaneous Functions for Panel Data, Quantiles, and Printing
Results
Bayesian Sampling for Stick-Breaking Mixtures
Bayesian Estimation for Finite Mixture of Distributions
The pseudo-likelihood method for pairwise binary markov networks
Bundle Methods for Regularized Risk Minimization Package
Bayesian Models for Rare Variant Association Analysis
Learning Discrete Bayesian Network Classifiers from Data
Data Generator based on Bayesian Network Model
Bayesian Network Structure Learning, Parameter Learning and
Inference
Bagged k-Nearest Neighbors Survival Prediction
Bayesian Estimation for Normal Heteroscedastic Nonlinear
Regression Models
Ferguson-Klass Type Algorithm for Posterior Normalized Random
Measures
Bayesian Nonparametric Method for Mediation
Bayesian Nonparametric Model for Clustering with Mixed Scale
Variables
A Bayesian Nonparametric Algorithm for Time Series Clustering
Bayesian Non- And Semi-Parametric Model Fitting
Spatial Implementation of Bayesian Networks and Mapping
Bayesian Network Structure Learning from Data with Missing
Values
Bayesian Output Analysis Program (BOA) for MCMC
Board Games and Tools for Building Board Games
Profilling of Peripheral Blood Mononuclear Cells using CyTOF
Bacterium and Virus Analysis of Orthologous Groups (BOG) is a
Package for Identifying Differentially Regulated Genes in the
Light of Gene Functions
Interface to the Boilerpipe Java Library
Bayesian Optimal INterval (BOIN) Design for Single-Agent and
Drug- Combination Phase I Clinical Trials
Functions for Elementary Bayesian Inference
An Improved Multiple Testing Procedure for Controlling False
Discovery Rates
Authoring Books and Technical Documents with R Markdown
Generate Varied Types of Books and Documents with R 'bookdown'
Package
Optimal Estimation of Partially Observed Boolean Dynamical
Systems
Construction, Simulation and Analysis of Boolean Networks
Boosted Multivariate Trees for Longitudinal Data
A modular framework to bag or boost any estimation procedure
Optimized GWAS cohort subset selection for resequencing studies
Bootstrap Functions (Originally by Angelo Canty for S)
Bootstrapped Confidence Intervals for (Negative) Likelihood
Ratio Tests
Bootstrap-MRMR Technique for Informative Gene Selection
Bootstrap Methods for Various Network Estimation Routines
Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Bootstrapped Response and Correlation Functions
A Bootstrap Test for the Probability of Ruin in the Classical
Risk Process
Bootstrap Subsamplings of Sparse Partial Least Squares -
Discriminant Analysis for Classification and Signature
Identification
Functions for the Book "An Introduction to the Bootstrap"
Fast, Exact Bootstrap Principal Component Analysis for High
Dimensional Data
Bootstrap Tolerance Levels for Credit Scoring Validation
Statistics
Test Stationarity using Bootstrap Wavelet Packet Tests
Bayesian Ordination and Regression AnaLysis
Wrapper Algorithm for All Relevant Feature Selection
A Bunch of Structure and Sequence Analysis
Convert Binary Species Range Maps into Continuous Surfaces Based
on Distance to Range Edge
Analytic Solutions for (ground-water) Boussinesq Equation
Response Transformations for Random Effect and Variance
Component Models
Downloads Box Office Information for Given Dates (How Much Each
Movie Earned in Theaters)
Double Box Plot for Two-Axes Correlation
Biplot of Multivariate Data Based on Principal Components
Analysis
Beta Product Confidence Procedure for Right Censored Data
bPeaks: an intuitive peak-calling strategy to detect
transcription factor binding sites from ChIP-seq data in small
eukaryotic genomes
Bayesian Phylogeographic and Ecological Clustering
Computations Around Bayesian Predictive Power
Fits the Bradley-Terry Model to Potentially Large and Sparse
Networks of Comparison Data
Visualize Combined Action Response Surfaces and Report BRAID
Analyses
Fitting Dose Response with the BRAID Combined Action Model
Helper functions to misc3d and rgl packages for brain imaging
Basic wavelet analysis of multivariate time series with a
visualisation and parametrisation using graph theory
Simulation and Estimation for Branching Processes
Bootstrapped Robustness Assessment for Qualitative Comparative
Analysis
Species Richness Estimation and Modeling
Multiple Change-Point Detection and Segmentation
An R Package for Multiple Break-Point Detection via the
Cross-Entropy Method
Core Functions to Read and Fit 13c Time Series from Breath Tests
Stan-Based Fit to Gastric Emptying Curves
Templating Framework for Report Generation
Extracting Usable Data from the Grad Cafe Results Search
Bias Reduction in Binomial-Response Generalized Linear Models
Bias Reduction in Generalized Linear Models
Brier score decomposition of probabilistic forecasts for binary
events
An Implementation of the Bridge Distribution with Logit-Link as
in Wang and Louis (2003)
Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
Bridge Sampling for Marginal Likelihoods and Bayes Factors
Bias Reduction with Missing Binary Response
Bayesian Regularization for Feed-Forward Neural Networks
Convert Statistical Analysis Objects into Tidy Data Frames
A Compression Format Optimized for the Web
Bayesian Analysis of Quantile Regression Models
Bayesian Inference on the Ratio of Two Poisson Rates
Interface to the 'OpenBUGS' MCMC Software
Statistical methods for safety assessment in agricultural field
trials
Bayesian State-Space Models for Animal Movement
Bayesian Spectral Analysis Models using Gaussian Process Priors
Bayesian Survival Model with Lasso Shrinkage Using Generalized
Weibull Regression
Nonparametric Smoothing of the Hazard Function
Bayes Screening and Model Discrimination
Bayesian Nonparametric Spectral Density Estimation Using
B-Spline Priors
Adds Functionality to the R Markdown + Shiny Bootstrap Framework
bspmma: Bayesian Semiparametric Models for Meta-Analysis
Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing
Matrix Estimates
Bayesian Inference of State Space Models
Birnbaum-Saunders Model Based on Skew-Normal Distribution
Temporal Exponential Random Graph Models by Bootstrapped
Pseudolikelihood
Estimates Univariate Function via Bayesian Trend Filtering
Modelling Heterogeneity in Paired Comparison Data
Training and Analysing Asynchronous Boolean Models
Probabilistic Models for Assessing and Predicting your Customer
Base
Bias and Uncertainty Corrected Sample Size
Buckley-James Regression for Survival Data with High-Dimensional
Covariates
Analyze Bunching in a Kink or Notch Setting
Markov model for bursty behavior in streams
Bayesian Analysis of a Vector Autoregressive Model with
Stochastic Volatility and Time-Varying Parameters
A Simple alternative to proportional Venn diagrams
The Stark-Parker algorithm for bounded-variable least squares
Solvers for Boundary Value Problems of Differential Equations
Bayesian Variant Selection: Bayesian Model Uncertainty
Techniques for Genetic Association Studies
Baumgartner Weiss Schindler Test of Equal Distributions
Statistics About Bytes Contained in a File as a Circle Plot
Extended Inference for Lasso and Elastic-Net Regularized Cox and
Generalized Linear Models
Methods for Detecting Safety Signals in Clinical Trials Using
Body-Systems (System Organ Classes)
Compare Two Classifications or Clustering Solutions of Varying
Structure
Infering large-scale gene networks with C3NET
C5.0 Decision Trees and Rule-Based Models
Simple, Multiple and Joint Correspondence Analysis
Bootstrap Confidence Regions for Correspondence Analysis
Classification Accuracy and Consistency under Item Response
Theory
Conditional Density Estimation Network Construction and
Evaluation
A Package to Perform Covariate Augmented Dickey-Fuller Unit Root
Tests
Provides a GUI to Several Statistical Methods
Simulation of Plasma Caffeine Concentrations by Using Population
Pharmacokinetic Model
Conditional Akaike information criterion for lme4
R graphics device using cairo graphics library for creating
high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG,
PostScript) and display (X11 and Win32) output
Calculations for All Common Subsequences
Multiple imputation using MICE and Random Forest
Automated Parameter Estimation for Complex (Ecological) Models
Calibration of Scatterplot and Biplot Axes
Weighting and Estimation for Panel Data with Non-Response
Bayesian calibration of complex computer codes
Improved Allele-Specific Copy Number of SNP Microarrays for
Downstream Segmentation
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
Camera Trap Data Management and Preparation of Occupancy and
Spatial Capture-Recapture Analyses
Estimation of Temporal Ordering of Cancer Abnormalities
Visualizing Generalized Canonical Discriminant and Canonical
Correlation Analysis
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal
and Spatial Clonal Evolutionary History by Next-Generation
Sequencing
Chemical Composition of Differential Protein Expression
Directly Extracts Complete CANSIM Data Tables
Visualization Package for CanvasXpress in R
Combined Analysis of Pleiotropy and Epistasis
Comparative Analyses of Phylogenetics and Evolution in R
Numbers Figures and Creates Simple Captions
CAlibrating Penalities Using Slope HEuristics
Estimates population size from non-invasive sampling
Spatial Generalised Linear Mixed Models for Areal Unit Data
Data Used in the Vignettes Accompanying the CARBayes and
CARBayesST Packages
Spatio-Temporal Generalised Linear Mixed Models for Areal Unit
Data
Estimation of the Number of Fatalities from Carcass Searches
Companion to Applied Regression Data Sets
Identification of Cardinal Dates in Ecological Time Series
Cardiovascular Safety Exposure-Response Modeling in Early-Phase
Clinical Studies
High-Dimensional Regression and CAR Score Variable Selection
Statistical package for population size estimation in
capture-recapture models
Estimation of caribou abundance based on large scale
aggregations monitored by radio telemetry
Functions for Statistics Classes at Carleton College
Ecological Quality Ratios Calculation and Plot
A Collection of Database, Data Structure, Visualization, and
Utility Functions for R
Build Common Tables of Summary Statistics for Reports
CRISPR AnalyzeR for Pooled CRISPR Screens
Reparameterized and marginalized posterior sampling for
conditional autoregressive models, OpenCL implementation
Covariate Assisted Ranking and Screening for Large-Scale
Two-Sample Inference
Censored Autoregressive Model with Exogenous Covariates
Fitting Flexible Smooth-in-Time Hazards and Risk Functions via
Logistic and Multinomial Regression
Identify Similar Cases for Qualitative Case Studies
Efficient Comparative Phylogenetics on Large Trees
Analysis of categorical-variable datasets with missing values
Categorical Data Analysis Program Package
Fishery Stock Assessment by Generalized Depletion Models
High Dimensional Factor Analysis and Confounder Adjusted Testing
and Estimation
Community Assembly by Traits: Individuals and Beyond
An R Package for Simulating IRT-Based Computerized Adaptive
Tests
Chronomics Analysis Toolkit (CAT): Analyze Periodicity
Case-Control and TDT Meta-Analysis Package
Tools: moving window statistics, GIF, Base64, ROC AUC, etc
Generation of IRT Response Patterns under Computerized Adaptive
Testing
Special models for categorical variables
Computerized Adaptive Testing for Survey Research
Computation of the p-Value for the Exact Conditional
Cochran-Armitage Trend Test
Tools for Estimating Causal Dose Response Functions
Deriving Expressions of Joint Interventional Distributions and
Transport Formulas in Causal Models
Methods for Estimating Causal Effects from Observational Data
Estimation of Causal Effects with Generalized Additive Models
Inferring Causal Effects using Bayesian Structural Time-Series
Models
Causal Learning of Mixed Graphical Models
Selection Bias Approach to Sensitivity Analysis for Causal
Effects
Analysis utilities for binary classification and Causata users
Contextual Bayesian Anomaly Detection in R
Compare Baseline Characteristics Between Groups
Clustering of Multivariate Binary Data with Dimension Reduction
via L1-Regularized Likelihood Maximization
Statistics Netherlands (CBS) Open Data API Client
Bayesian Canonical Correlation Analysis and Group Factor
Analysis
(Robust) Canonical Correlation Analysis via Projection Pursuit
Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Combined Cluster and Discriminant Analysis
CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks
Cox Model for Case-Cohort Data with Stratified
Subcohort-Selection
Convex Clustering Methods and Clustering Indexes
Simulate Congruence Class Model for Networks
Significance Tests for Canonical Correlation Analysis (CCA)
One and two locus GWAS of binary phenotype with
case-control-population design
Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing
Data
Tools for the Continuous Convolution Trick in Nonparametric
Estimation
Consensus Analysis, Model-Based Clustering, and Cultural
Consensus Theory Applications
Coupled-Dipole Approximation for Electromagnetic Scattering by
Three-Dimensional Clusters of Sub-Wavelength Particles
Wrappers for 'tidyr::gather()' and 'tidyr::spread()'
Retrieve U.S. Flu Season Data from the CDC FluView Portal
Conditional Distance Correlation and Its Related Feature
Screening Method
Evaluate Differentially Private Algorithms for Publishing
Cumulative Distribution Functions
Quantile Regression for Random Variables on the Unit Interval
Coordinate Descent Algorithms for Lasso Penalized L1, L2, and
Logistic Regression
Tools to Download and Work with USDA Cropscape Data
Components of Canadian Monetary and Credit Aggregates
Phylogenetically Classifies Retention Mechanisms of Duplicate
Genes from Gene Expression Data
Constrained Dual Scaling for Detecting Response Styles
Statistical Inference of C- And D-Vine Copulas
Sampling from Conditional C- and D-Vine Copulas
Benchmark for the CEC 2005 Special Session on Real-Parameter
Optimization
Benchmark functions for the Special Session and Competition on
Real-Parameter Single Objective Optimization at CEC-2013
Collection of Common Astronomical Conversion Routines and
Functions
Translate Spreadsheet Cell Ranges to Rows and Columns
Functions to fit cell volume distributions and thereby estimate
cell growth rates and division times
Linear Regression with a Randomly Censored Covariate
Censored Linear Mixture Regression Models
Fits Normal and Student-t Censored Regression Model
Changes United States Census Geographic Code into Name of
Location
Cross-Entropy R Package for Optimization
Discriminant Analysis of Time Series in the Presence of
Within-Group Spectral Variability
Context Driven Exploratory Projection Pursuit
Outlier Detection Using the Iterated RMCD Method of Cerioli
(2010)
Covariance Estimation Regularized by Nuclear Norm Penalties
Cause-Specific Framework for Competing-Risk Analysis
Estimate quantiles using any order Cornish-Fisher expansion
Canadian Forest Fire Danger Rating System
Compare Groups, Analytically and Graphically
Calculate AUC-type measure when gold standard is continuous and
the corresponding optimal linear combination of variables with
respect to it
R-Based API for Accessing the MSKCC Cancer Genomics Data Server
(CGDS)
Microarray CGH analysis using the Smith-Waterman algorithm
Detecting hot spot on CGH array data with fused lasso
regression
Array CGH Data Analysis and Visualization
Segmentation Methods for Array CGH Analysis
Statistical Methods and Models for Claims Reserving in General
Insurance
Methods for Nonparametric Changepoint Detection
Change Point Estimation for Clustered Signals
Markov Model for the Online Multi-Channel Attribution Problem
Shiny Web Application for the Multichannel Attribution Problem
Numerical Computation Cumulative Distribution Function and
Probability Density Function from Characteristic Function
Charge Transfer Rates and Charge Carrier Mobilities
Check the Basic Validity of a (Function) Argument
Install Packages from Snapshots on the Checkpoint Server for
Reproducibility
Analysis and Visualisation of Ecological Communities
Calibration Functions for Analytical Chemistry
A Cheminformatics Modeling Laboratory for Fitting and Assessing
Machine Learning Models
Multivariate Statistical Analysis in Chemometrics
Chemometrics with R - Multivariate Data Analysis in the Natural
Sciences and Life Sciences
Multiple Testing Methods for Exploratory Research
Closest History Flow Field Forecasting for Bivariate Time Series
Partitioning Chi-Squared and Tau Index for Three-Way Contingency
Tables
Data and Methods Around Reference Values in Pediatrics
Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Miscellaneous Tools for Chinese Text Mining and More
Toolkit of Helper Functions to Pre-Process Amplification Data
Nonparametric Methods for Identifying Differential Enrichment
Regions with ChIP-Seq Data
Chemical Thermodynamics and Activity Diagrams
Amend, Augment and Aid Analysis of John Snow's Cholera Data
Simplify the Creation of Choropleth Maps in R
Contains an Administrative-Level-1 Map of the World
Contains Maps Used by the 'choroplethr' Package
Interface to Chromosome Counts Database API
Analysis of chromosomal interactions data (correction,
segmentation and comparison)
Chronological Objects which can Handle Dates and Times
Chunkwise Text-File Processing for 'dplyr'
Generative Models for Complex Networks with Conditionally
Independent Dyadic Structure
Weighted summary of cumulative incidence functions
Toolbox for Connectivity Informatics Technology Initiative
('CIFTI') Files
Deciphering Central Informative Nodes in Network Analysis
Co-Information based N-Order Epistasis Detector and Visualizer
Centered Isotonic Regression and Dose-Response Utilities
Maximum Likelihood Analysis of Circular Data
Statistical Analysis of Circular Data using Nonnegative
Trigonometric Sums (NNTS) Models
Detection of Outliers in Circular-Circular Regression
Circular Statistics, from "Topics in circular Statistics" (2001)
CIT Breast Cancer Molecular SubTypes Prediction
CIT Colon Cancer Molecular SubTypes Prediction
An RStudio Addin to Insert BibTex Citation in Rmarkdown
Documents
Confidence or Prediction Intervals, Quantiles, and Probabilities
for Statistical Models
'RStudio' Add-in to Insert Markdown Citations
Visualization of structure and contents of a database
Track Flows of Water Through an Urban System
Client for the Comprehensive Knowledge Archive Network ('CKAN')
'API'
C++ implementations of phylogenetic cladogenesis calculations
Time Series Modeling for Climate Change Proxies
Classes and Methods for "Class Comparison" Problems on
Microarrays
Classes and Methods for "Class Discovery" with Microarrays or
Proteomics
Construct Graphs of S4 Class Hierarchies
Generates a Visualization of Classifier Performance as a Grid of
Diagnostic Plots
Explore classification models in high dimensions
Classification Accuracy and Consistency under IRT models
Robust multivariate classification using highly optimised SVM
ensembles
The Critical Care Clinical Data Processing Tools
Cleaning Geometries from Spatial Objects
A Tidy Data Model for Natural Language Processing
Simultaneous Variables Clustering and Regression
Model-Based Clustering of Categorical Sequences
Fix Data and Create Report Tables from Different Objects
Analyzes Clickstreams Based on Markov Chains
Easily Download and Visualise Climate Data from CliFlo
Censoring Data and Likelihood-Based Correlation Estimation
Climate Tools (Series Homogenization and Derived Products)
Calculate Average Minimal Depth of a Maximal Subtree for
'ranger' Package Forests
Climate Classification According to Several Indices
Climate Downscaling Library for Daily Climate Model Output
Constrained L1-minimization for Inverse (covariance) Matrix
Estimation
Statistical Methods for Climate Sciences
Clinical Trial Design and Data Analysis Functions
Read and Write from the System Clipboard
Constrained Inference for Linear Mixed Effects Models
Fitting exact conditional logistic regression with lasso and
elastic net penalties
Lasso Estimation of Conditional Logistic Regression Models for
Matched Case-Control Studies
Central Limit Theorem Experiments (Theoretical and Simulation)
Cluster-Robust (Sandwich) Variance Estimators with Small-Sample
Corrections
Clustering and Visualization of Mixed-Type Data
Wilcoxon Rank Sum Test for Clustered Data
Statistical Methods for Analyzing Clustered Matched Pair Data
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Analyze Clustered Data with Generalized Linear Models using the
Cluster Bootstrap
Location and Visualization of Clustered Somatic Mutations
Explore clustering interactively using R and GGobi
Random Cluster Generation (with Specified Degree of Separation)
Identifying clusters in genomics data by recursive partitioning
Optimal Distance-Based Clustering for Multidimensional Data with
Sequential Constraint
Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM)
Integrative Clustering for Heterogeneous Biomedical Datasets
Power Calculations for Cluster-Randomized and Cluster-Randomized
Crossover Trials
Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and
K-Medoids Clustering
Reproducibility of gene expression clusters
Calculate Cluster-Robust p-Values and Confidence Intervals
Searching for Optimal Clustering Procedure for a Data Set
Assessment of Stability of Individual Objects or Clusters in
Partitioning Solutions
Hierarchical Clustering with Spatial Constraints
k-Prototypes Clustering for Mixed Variable-Type Data
Variable Selection in Clustering by Mixture Models for Discrete
Data
Easy Interface for Clustering a Set of Documents and Exploring
Group- Based Patterns
Methods for Joint Dimension Reduction and Clustering
Clustering of Variables Around Latent Variables
Variable Selection for Gaussian Model-Based Clustering
Gaussian-Based Visualization of Generic Model-Based Clustering
Covariance Matrix Adapting Evolutionary Strategy
Covariance Matrix Adaptation Evolution Strategy
Computational Methods for Numerical Analysis
Control Charts for Conway-Maxwell-Poisson Distribution
Subdistribution Analysis of Competing Risks
Analysis of Competing Risks Using Quantile Regressions
Misc Functions of the Center for the Mathematical Research
The Complex Multivariate Gaussian Distribution
Causal Modeling with Coincidence Analysis
Canonical Non-Symmetrical Correspondence Analysis in R
Complex-Valued Wavelet Lifting for Signal Denoising
Complex-Valued Wavelet Lifting for Univariate and Bivariate Time
Series Analysis
Maximum Likelihood Estimation of a Log-Concave Density Function
Pre-process DNA Copy Number (CN) Data for Detection of CN Events
Fast Algorithms for Frequency-Preserving Null Models in Ecology
Association Analysis of CNV Data and Imputed SNPs
Example data sets for association analysis of CNV data
A Collection of Functions to Help with Analysis of Coarsely
Observed Data
Constrained B-Splines (Sparse Matrix Based)
COmbat CO-Normalization Using conTrols (COCONUT)
Extract Shared Variation in Collections of Data Sets Using
Regression Models
Statistical Comparisons of Two or more Alpha Coefficients
Output Analysis and Diagnostics for MCMC
A Basic Set of Functions for Compositional Data Analysis
Markov chain Monte Carlo burn-in based on "bridge" statistics
Automated C Code Generation for 'deSolve', 'bvpSolve' and
'Sundials'
Analysis of R Code for Reproducible Research and Code
Comprehension
Alternative Factor Coding Matrices for Linear Model Formulae
Robust Coefficient Alpha and Omega with Missing and Non-Normal
Data
Species coexistence modeling and analysis
Conditional Inference Procedures in a Permutation Test Framework
Simultaneous Confidence Interval for Multinomial Proportion
Consistent Monitoring of Stationarity and Cointegrating
Relationships
Parameter Estimation and Inference in a Cointegrating Regression
Constrained Optimization on Linear Function
Interactive Collapsible Tree Diagrams using 'D3.js'
Collocation Inference for Dynamic Systems
Collapsed Latent Position Cluster Model for Social Networks
Auxiliary Package for Package 'CollapsABEL'
Colocalisation tests of two genetic traits
Distance Metrics for Image Color Similarity
Implementation of Colored Independent Component Analysis and
Spatial Colored Independent Component Analysis
Plot and add custom coloring to Venn diagrams for 2-dimensional,
3-dimensional and 4-dimensional data
Color Palettes using Colormaps Node Module
Optimized Rendering of Fold Changes and Confidence Values
A 'ggplot2' Extension to Visualize Two Variables per Color
Aesthetic Through Color Space Projections
Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams
Color Calculations with Emphasis on Spectral Data
Tools for colors in a Hue-Saturation-Value (HSV) color model
A Colour Picker Tool for Shiny and for Selecting Colours in
Plots
A Combined Association Test for Genes using Summary Statistics
Synergy/Antagonism Analyses of Drug Combinations
Estimation of Optimal Portfolio Weights by Combining Simple
Portfolio Strategies
Construction Methods of some Series of PBIB Designs
Exact Test from the Combinations of Mutually Exclusive
Alterations (CoMEt) Algorithm
Computational Methods for Immune Cell-Type Subsets
Print Nicely Formatted Comments for Use in Script Files
High Performance CommonMark and Github Markdown Rendering in R
JAR Files of the Apache Commons Mathematics Library
Extract and plot common trends from a cointegration system.
Calculate P-value for Johansen Statistics
Comparative Phylogeographic Analysis using the Community Tree
Framework
Creates empty plots with compact axis notation
Compare Two Correlated C Indices with Right-censored Survival
Outcome
Interface to Diverse Estimation Methods of Causal Networks
Do a Git Style Diff of the Rows Between Two Dataframes with
Similar Structure
comparison of medical forms in CDISC ODM format
Correct for Verification Bias in Diagnostic Accuracy & Agreement
Multivariate likelihood ratio calculation and evaluation
Event-specific incidence rates for competing risks data
Tools for Retrieval and Storage of Functional Genomics Data
The Semi-Parametric Cumulative Incidence Function
Conway-Maxwell-Poisson GLM and distribution functions
Calculate the Proportion of Permutations in Line with an
Informative Hypothesis
Robust Linear Regression with Compositional Data as Covariates
Estimation, Gene Selection, and Survival Prediction Based on the
Compound Covariate Method Under the Cox Proportional Hazard
Model
Distribution Function of Quadratic Forms in Normal Variables
Composite-Likelihood Based Analysis of Random Fields
Interface with the United Nations Comtrade API
Human-Friendly Text from Unknown Strings
Optimisation with Continuous Convex Piecewise (Linear and
Quadratic) Functions
Approximate conditional inference for logistic and loglinear
models
Parameter estimation in conditional GEE for recurrent event gap
times
Computation of P Values and Bayes Factors for Conditioning Data
Conditional Density Estimation with Neural Network Conditional
Mixtures
Condition Number Regularized Covariance Estimation
Estimation of the Conditional Survival Function for Ordered
Multivariate Failure Time Data
Conditional Visualization for Statistical Models
Primal or Dual Cone Projections with Routines for Constrained
Regression
Confidence Estimation of Environmental State Classifications
Manage Environment Specific Configuration Values
Package to Parse an INI File, Including Variable Interpolation
An Implementation of Parsing and Writing Configuration File
(JSON/INI/YAML/TOML)
Descriptive Interpretations of Confidence Intervals
Conformal Prediction for Regression and Classification
Sensitivity Analyses for Unmeasured Confounding in Meta-Analyses
Configural Frequencies Analysis Using Log-Linear Modeling
Estimates and Bounds for the False Discovery Proportion, by
Permutation
Downloads, Unpacks and Tidies Legislative Data from the
Brazilian Federal Senate and Chamber of Deputies
Algorithms for Fitting Circles, Ellipses and Conics Based on the
Work by Prof. Nikolai Chernov
A package to check the cancellation axioms of conjoint
measurement
A Tool for Reproducible Research by Converting 'LaTeX' Files
Generated by R Sweave to Rich Text Format Files
Tools for Working with Connectivity Data
Conover-Iman Test of Multiple Comparisons Using Rank Sums
Computation of Parameters Used in Preliminary Assessment of
Conservation Status
Partial Linear Least-Squares Regression using Constrained
Splines
Compute the Median Ranking(s) According to the Kemeny's
Axiomatic Approach
Reference on Constants, Units and Uncertainty
Constrained, Covariance-Matching Constrained and Universal Point
or Block Kriging
Model-Based Clustering and Classification with the Multivariate
Contaminated Normal Distribution
Contouring of Non-Regular Three-Dimensional Data
Create Contour Plots from Data or a Function
Median Comparison for Two-Sample Right-Censored Survival Data
Quantifies and assesses the significance of convergent evolution
Disciplined Convex Programming in R using Convex.jl
Income Concentration Analysis with Complex Survey Samples
Probabilistic Species Co-Occurrence Analysis in R
Co-Operation: Fast Covariance, Correlation, and Cosine
Similarity Operations
Cooperative aspects of optimal trees in weighted graphs
General Bivariate Copula Theory and Many Utility Functions
Fitting the copCAR Regression Model for Discrete Areal Data
Coverage Probability Excursion (CoPE) Sets
Sample Size Calculation for Two Primary Time-to-Event Endpoints
in Clinical Trials
Copula Based Bivariate Beta-Binomial Model for Diagnostic Test
Accuracy Studies
Estimation of Distribution Algorithms Based on Copulas
Estimation and Statistical Process Control Under Copula-Based
Time Series Models
Bivariate Copula Based Regression Models
Copula Mixed Effect Models for Bivariate and Trivariate
Meta-Analysis of Diagnostic Test Accuracy Studies
Computing Statistical Indices to Detect Answer Copying on
Multiple-Choice Tests
Collection of Rudimentary Bioinformatics Tools
Generate correlated count random variables
Community Estimation in G-Models via CORD
Programmatic Analysis of Sediment Cores Using Computed
Tomography Imaging
Classification, Regression and Feature Evaluation
Core Functionality for Simulating Quantities of Interest from
Generalised Linear Models
TDT for compound heterozygous and recessive models
Record Linkage, Incorporating Imputation for Missing Agreement
Patterns, and Modeling Correlation Patterns Between Fields
The Clustering of Regression Models Method
Efficient Estimation of Covariance and (Partial) Correlation
Statistics and data sets for corpus frequency data
Implementation of 2D Correlation Analysis in R
Nonparametrics with Clustered Binary and Multinomial Data
Correct Overloaded Peaks from GC-APCI-MS Data
Linear Regression Based on Linear Structure Between Variables
Functions and Methods for Correspondence Regression
A collection of functions for graphing correlation matrices
Estimate Correlations Between Repeatedly Measured Endpoints
(E.g., Reliability) Based on Linear Mixed-Effects Models
Modeling Correlational Magnitude Transformations in
Discretization Contexts
Arbitrary Bounding of Series and Time Series Objects
Tools for processing data after a Genome Wide Association Study
Cosegregation Analysis and Pedigree Simulation
Tools for estimating and predicting the cosinor model
Extended Tools for Cosinor Analysis of Rhythms
Functions for cosmological distances, times, luminosities, etc
Photometric redshift estimation using generalized linear models
Fit Regularized Nonparametric Regression Models Using COSSO
Penalty
Connect to and Work with CouchDB Databases
Estimation and Inference Methods for Counterfactual Analysis
Flexible Univariate Count Models Based on Renewal Processes
Mean and Variance Modeling of Count Data
Quantify United States County-Level Flood Measurements
Convert from UTC to Local Time for United States Counties
Compiles Meterological Data for U.S. Counties
A Residue-Residue Contact Detecting Method
Local Polynomial Regression of State Dependent Covariates in
State-Space Models
Tests on Properties of Space-Time Covariance Functions
Brownian Motion Processes for 'nlme'-Models
Latent Class Models with Covariate Effects on Underlying and
Measured Variables
A simultaneous regression model for the mean and covariance
Robust Covariance Estimation via Nearest Neighbor Cleaning
Model-Free Covariate Selection in High Dimensions
Tests for Determining if the Covariance Structure of
2-Dimensional Data is Separable
Computes covariance test for adaptive linear modelling
Performs Segmented Linear Regression on Two Independent
Variables
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Messages, Warnings, Strings with Ascii Animals
Cox models by likelihood based boosting for a single survival
endpoint or competing risks
Cox-Type Models for Interval-Censored Data
Cox Regression with Firth's Penalized Likelihood
Sparse Estimation of Cox Proportional Hazards Models via
Approximated Information Criterion
Stochastic Gradient Descent log-Likelihood Estimation in Cox
Proportional Hazards Model
Cox Regression (Proportional Hazards Model) with Multiple Causes
and Mixed Effects
Confirmatory Path Analysis through the d-sep tests
Bayesian Meta Analysis for Studying Cross-Phenotype Genetic
Associations
Methods to perform Common Principal Component Analysis (CPCA)
Concordance Probability Estimates in Survival Analysis
Association Between Methylation and a Phenotype of Interest
Parallelized Genomic Prediction and GWAS
CpG Filtering Method Based on Intra-Class Correlation
Coefficients
Find the maximum likelihood estimator of the shape constrained
hazard baseline and the effect parameters in the Cox
proportional hazards model
Sequential and Batch Change Detection Using Parametric and
Nonparametric Methods
Correction of the pvalue after multiple coding
The Conditional Probability Function of a Competing Event
Functions for Working with Danish CPR Numbers
Nonparametric Change Point Estimation for Survival Data
Quantile, Composite Quantile Regression and Regularized Versions
Conditional Maximum Likelihood for Quadratic Exponential Models
for Binary Panel Data
Power Calculation for Weighted Log-Rank Tests in Cure Rate
Models
Testing Differences Between Competing Risks Models and Their
Visualisations
Probabilistic damage tolerance analysis for fatigue cracking of
metallic aerospace structures
Multivariate nonparametric Cramer-Test for the
two-sample-problem
Download Logs from the 'RStudio' 'CRAN' Mirror
RStudio Addin for Searching Packages in CRAN Database Based on
Keywords
Fit Continuous-Time Correlated Random Walk Models to Animal
Movement Data
Categorical Randomized Block Data Analysis
Censored Regression with Conditional Heteroscedasticity
Functions for calculating the CreditMetrics risk model
Evaluation of Credit Risk with Structural and Reduced Form
Models
Analyze Cricketers Based on ESPN Cricinfo Statsguru
Group-Based Modelling of Longitudinal Data
Statistical Methods for Crime Series Linkage
Fits a Model that Partitions the Covariate Space into Blocks in
a Data- Adaptive Way
Continual Reassessment Method (CRM) for Phase I Clinical Trials
Fetch 'Scholary' Full Text from 'Crossref'
CCMN and other noRMalizatioN methods for metabolomics data
Object-Oriented Implementation of CRM Designs
Downloads and Builds datasets for Climate Reference Network
Implementation Helper for [ and [<- Of Custom Matrix-Like Types
Schedule R Scripts and Processes with the 'cron' Job Scheduler
Open Data of Agricultural Production of Crops of Peru
A Partial Clustering Algorithm with Automatic Estimation of the
Number of Clusters and Identification of Outliers
Analysis and Search of Crossover Designs
Confidence intervals for crossover points of two simple
regression lines
Cross-Screening in Observational Studies that Test Many
Hypotheses
Inter-Widget Interactivity for HTML Widgets
Verbal Autopsy Data Transform for Use with Various Coding
Algorithms
Classes and Methods for Cross Validation of "Class Prediction"
Algorithms
Cross-Recurrence Quantification Analysis for Categorical and
Continuous Time-Series
Penalized Variable Selection in Competing Risks Regression
Competing risks regression for Stratified and Clustered data
Stepwise Covariate Selection for the Fine & Gray Competing Risks
Regression Model
Nonlinear Regression Parameters Estimation by 'CRS4HC' and
'CRS4HCe'
Doubly Robust Inverse Probability Weighted Augmented GEE
Estimator
Sample Size Estimation Functions for Cluster Randomized Trials
Interface to Climatic Research Unit Time-Series Version 3.21
Data
Identifying cryptic relatedness in genetic association studies
Statistical Tests for Cryptographic Randomness
Calculate the Relative Crystallinity of Starch by XRD and FTIR
Bounds on Distributional Treatment Effect Parameters
Functions for Conditional Simulation in Regression-Scale Models
Frequent Contiguous Sequential Pattern Mining of Text
Covariate-adjusted Skewed Functional Model (cSFM)
Correlates of State Policy Data Set in R
Methods to Test Hypotheses on the Distribution of Spatial Point
Processes
csSAM - cell-specific Significance Analysis of Microarrays
Selection of Number of Clusters via Normalized Clustering
Instability
Substantive significance testing for regression estimates and
marginal effects
Read and Write CSV Files with Selected Conventions
Import and Export CSV Data with a YAML Metadata Header
Correlated Trait Locus (CTL) Mapping in R
A Text Mining Toolkit for Chinese Document
Estimating the Parameters of a Continuous-Time Markov Chain from
Discrete-Time Data
Modeling Animal Movement with Continuous-Time Discrete-Space
Markov Chains
Censored and Truncated Quantile Regression
Continuous Time Structural Equation Modelling
A Class of Mixture Models for Ordinal Data
Adaptive Multivariate Integration over Hypercubes
Rule- And Instance-Based Regression Modeling
CUDA Parallel Implementation of a Bayesian Multilevel Model for
fMRI Data Analysis
Data sets for the examples used in the package "cudaBayesreg"
Charles's Utility Function using Formula
Analyze Multivariate Phenotypes by Combining Univariate Results
Extends ddply to allow calculation of cumulative quantities
Change point detection in genomic sequences
Partial Function Application with %<%, %-<%, and %><%
Confidence Intervals for the Current Status Model
The package will formally test two curves represented by
discrete data sets to be statistically equal or not when the
errors of the two curves were assumed either equal or not using
the tube formula to calculate the tail probabilities
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
Customized Training for Lasso and Elastic-Net Regularized
Generalized Linear Models
Compute Decision Interval and Average Run Length for CUSUM
Charts
CUTOFF: A Spatio-temporal Imputation Method
An R package to perform LPUE standardization and stock
assessment of the English Channel cuttlefish stock using a
two-stage biomass model
Cross-Validated Area Under the ROC Curve Confidence Intervals
Estimation of the Calibration Equation with Error-in
Observations
Tests for the Equality of Coefficients of Variation from
Multiple Groups
Penalized Logistic Regression Model using Majorization
Minimization by Coordinate Descent (MMCD) Algorithm
Calculate the predictive squared correlation coefficient
Fast Cross-Validation via Sequential Testing
Cross-validation tools for regression models
Regularized Estimators of Covariance Matrices with CV Tuning
Miscellaneous Functions for Math, Plotting, Printing,
Statistics, Strings, and Tools
extend cxxfunction by saving the dynamic shared objects
Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Query 'Team Cymru' 'IP' Address, Autonomous System Number
('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware'
Hash Data Services
Cycle and Phase Identification for mastication data
Agent-Based Model for Taenia_solium Transmission and Control
Computes Signaling and Population Stats for Cytometry Data on
Cytobank using 'CytobankAPI'
Predicting Causal Direction from Dependency Features
Interactive Heat Maps Using 'htmlwidgets' and 'D3.js'
Tools for creating D3 JavaScript network, tree, dendrogram, and
Sankey graphs from R
Plotting D3 Hierarchical Plots in R and Shiny
Create Interactive Collapsible Trees with the JavaScript 'D3'
Library
Data Analysis and Graphics Data and Functions
Data Sets and Functions, for Demonstrations with Expression
Arrays and Gene Sequences
Data Sets and Functions, supplementary to DAAG
Calculating Data Agreement Criterion Scores to Rank Experts
Based on Their Beliefs
Three-Way Data Analysis Through Densities
Functions Useful in the Design and ANOVA of Experiments
Design and Analysis of Experiments with R
Learning directed acyclic graphs (DAGs) through bootstrap
aggregating
Graphical Analysis of Structural Causal Models
Diagnostic accuracy of classification models
Dynamical Assembly of Islands by Speciation, Immigration and
Extinction
The DALY Calculator - Graphical User Interface for Probabilistic
DALY Calculation in R
Dynamic Assembly Model of Colonization, Local Extinction and
Speciation
Dams in the United States from the National Inventory of Dams
(NID)
Dandelion Plot for R-Mode Exploratory Factor Analysis
Package for Deep Architectures and Restricted Boltzmann Machines
Importing and Analysing Snp and Silicodart Data Generated by
Genome-Wide Restriction Fragment Analysis
Statistical Tools to Analyze Your Darts Game
Interactive Data Visualization with D3.js
File-Based Access to Large Matrices Stored on HDD in Binary
Format
Swarm Intelligence for Self-Organized Clustering
Tools for Easily Combining and Cleaning Data Sets
Compare Two Data Frames and Summarise the Difference
Divide and Recombine for Large, Complex Data
Make it Easier to Enter Questionnaire Data
Estimating Finite State Machine Models from Data
Export Data from R so DataGraph can Read it
A Suite of Checks for Identification of Potential Errors in a
Data Frame as Part of the Data Cleaning Process
A system for mapping foreign objects to R variables and
environments
Create and Append a Data Dictionary for an R Dataset
Easily Source Publicly Available Data on Derivatives
A Flexible Container to Transport and Manipulate Data and
Associated Resources
Performs variable level data quality checks and generates
summary statistics
Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Tools to Complete Euclidean Distance Matrices
An Implementation of a SAS-Style Data Step
General Purpose Hierarchical Data Structure
Data and Workspace Browser for Terminals
Main Package for Working with 'data.world' Data Sets
Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
Functions for "Data Analysis in Vegetation Ecology"
Discriminant Analysis with Additional Information
Discrete Bayesian Additive Regression Trees Sampler
Provides a graphical user interface to connect with databases
that use MySQL
Goodness-of-fit and two sample comparison tests using sample
entropy
Detecting Breakpoints and Estimating Segments in Trend
A Tool to Ensure the Validity of Database Writes
methods of distance-based gene set functional enrichment
analysis
'DBHYDRO' Hydrologic and Water Quality Data
Discrete Beta Kernel Graduation of Mortality Data
Compute the NPMLE of distribution from doubly censored data
Distance-Based Measures of Spatial Structures
Density Based Clustering of Applications with Noise (DBSCAN) and
Related Algorithms
Inferring Condition-Specific Networks via Differential Network
Inference
Dynamic Correlation Analysis for High Dimensional Data
Analyzing Dichotomous Choice Contingent Valuation Data
Differential Community Detection in Paired Biological Networks
A Package for Image Analysis of DCE-MRI (S4 Implementation)
Data Cloud Geometry (DCG): Using Random Walks to Find Community
Structure in Social Network Analysis
Differential Co-expression Analysis and Differential Regulation
Analysis of Gene Expression Microarray Data
Analysis of Ontologies and Protein Domain Annotations
Claims Reserving under the Double Chain Ladder Model
Data Cloning and MCMC Tools for Maximum Likelihood Methods
Functions for the Detection of Spatial Clusters of Diseases
Model-Based Detection of Disease Clusters
Hierarchical Models Made Easy with Data Cloning
Attribute profile estimation using Diagnostic Classification
Models and MCMC
List Linear n-Peptide Constraints for Overlapping Protein
Regions
Distance Covariance and Correlation for Time Series Analysis
Conventional Cross-validation statistics for climate-growth
model
Depth-Based Classification and Calculation of Data Depth
Variance Stabilization by Data-Driven Haar-Fisz (for
Microarrays)
Analysis and Visualization of Droplet Digital PCR in R and on
the Web
Learning Bayesian Networks with Mixed Variables
Deconvolution density estimation with adaptive methods for a
variable prone to measurement error
Bayesian Inference for Differential Equations
DEComposition of Indirect and Direct Effects
Quantitative Support of Decision Making under Uncertainty
Differential Co-Expression and Differential Expression Analysis
Decode Coded Variables to Plain Text and the Other Way Around
Time Series Prediction with PSF and Decomposition Methods (EMD
and EEMD)
Deconvolution Estimation in Measurement Error Models
Identifies Signatures Present in a Tumor Sample
Additional dialogs and functions for Deducer
Deductive Correction, Deductive Imputation, and Deterministic
Correction
Data Correction and Imputation Using Deductive Methods
Dirichlet-multinomial Evolutionary Event Profile Randomization
(DEEPR) test
Change the Default Arguments in R Functions
Integration of One-Dimensional Functions with Double Exponential
Formulas
A Tool for Standardizing Amphibian Taxonomy
Detection of differentially expressed genes
Models for Skewed Count Distributions Relevant to Networks
Multiple Imputation for Recurrent Events
Statistical Functions for the Delaporte Distribution
Sample Size and Power Calculations using the APPLE and SEPPLE
Methods
Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Estimates Pseudotimes for Single Cell Expression Data
Estimation of Multivariate Densities Using Adaptive Partitions
Identification of dichotomous differential item functioning
(DIF) using Angoff's Delta Plot method
Functions to Calculate Relatedness on Diploid Genetic Data
Evaluating the genetic differentiation between populations based
on Gst and D values
Differential Expression from Multiple Indicators
Deming, Thiel-Sen and Passing-Bablock Regression
Analysis of Age-Structured Demographic Models
Forecasting Mortality, Fertility, Migration and Population Data
Kernel Density Estimation for Demonstration Purposes
DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using
Test Set
Extending 'Dendrogram' Functionality in R
Nonlinear Methods for Analyzing Dendroclimatological Data
Extra Functions to Cut, Label and Colour Dendrogram Clusters
A Set of Tools for Calculating Spatial Synchrony Between
Tree-Ring Chronologies
Dendrogram seriation: ordering for visualisation
Modular Leaf Ordering Methods for Dendrogram Nodes
Parameter Estimates and Real-Time Prediction of a Single Dengue
Outbreak
Differential Expression Analysis Using a Bottom-Up Model
Statistical Analyses of De Novo Genetic Variants
Visualization of Multivariate Functions, Sets, and Data
Functional Linear Mixed Models for Densely Sampled Data
Clustering by Fast Search and Find of Density Peaks
Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for
density estimation
Dens-Based Method for Partial Correlation Estimation in Large
Scale Brain Networks
Density strips and other methods for compactly illustrating
distributions
Global Optimization by Differential Evolution
Differential Evolution Optimization in Pure R
Statistical Inference for Parametric and Semiparametric Models
Based on Dependently Truncated Data
Deconvolute Mixed Genomes with Unknown Proportions
Dependent Mixture Models - Hidden Markov Models of GLMs and
Other Distributions in S4
Nonparametric Depth Functions for Multivariate Analysis
Statistical Depth Functions for Multivariate Analysis
Functions and R Code to Accompany Derivatives Markets
Seasonal Adjustment by Frequency Analysis
An Interface to the DescribeDisplay GGobi Plugin
Describe Data in R Using Common Descriptive Statistics
Generate Descriptive Statistics & Explore Statistical
Distributions
Produce Descriptive and Comparative Tables Easily
Some Functions to be Used as Shortcuts in 'RStudio'
Optimal deseasonalization for geophysical time series using AR
fitting
Computational tool for designing genetical genomics experiments
Finding Optimal Block Designs for a Generalised Linear Mixed
Model
Matched Samples that are Balanced and Representative by Design
Desirability Functions for Ranking, Selecting, and Integrating
Data
Function Optimization and Ranking via Desirability Functions
Bagging with Distance-based Regression for Differential Gene
Expression Analyses
Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Estimation of Diagonal Elements of Sparse Precision-Matrices
Plotting Field Plans for Agricultural Experiments
Analyzing Wildlife Data with Detection Error
Detect Data Containing Personally Identifiable Information
Implementation of the DetMCD Algorithm (Robust and Deterministic
Estimation of Location and Scatter)
Suite of Deterministic and Robust Algorithms for Linear
Regression
Start the detrendeR Graphical User Interface (GUI)
A computer program to detect markers responding to selection
Data sets from Devore's "Prob and Stat for Eng (7th ed)"
Quantify the Relationship Between Development Rate and
Temperature in Ectotherms
Tools to Make Developing R Packages Easier
Phase I/II Adaptive Dose-Finding Design for Combination Studies
Compare Two Dataframes and Return Adds, Changes, and Deletes
Dose-finding by the continual reassessment method
Explore data.frames by plotting NA and classes of each variable
Differential Functioning of Items and Tests
Phase I/II Adaptive Dose-Finding Design for MTA
Extrapolation and Bridging of Adult Information in Early Phase
Dose-Finding Paediatrics Studies
Phase I Control Charts (with Emphasis on Distribution-Free
Methods)
Bayesian Dose-Finding Designs using Pharmacokinetics(PK) for
Phase I Clinical Trials
Capture-Recapture Estimation using Bayesian Model Averaging
Genetic Algorithm with Incomplete Dominance for Feature
Selection
Differential Geometric Least Angle Regression
Simulating Data for PLS Mode B Structural Models
Dynamic Estimation of Group-Level Opinion
Residual Diagnostics for Hierarchical (Multi-Level / Mixed)
Regression Models
Double Hierarchical Generalized Linear Models
Independence Testing via Hilbert Schmidt Independence Criterion
Diagnostic Plot and Multivariate Summary Statistics of Weighted
Samples from Importance Sampling
Block Diagonal Extraction or Replacement
Functions for Visualising Simple Graphs (Networks), Plotting
Flow Diagrams
Export DiagrammeR Graphviz Graphs as SVG
Calculate probabilities of various dice-rolling events
Downloads Job Descriptions from Dice.com
Construction and Evaluation of Metamodels
Kriging Methods for Computer Experiments
Kriging-Based Optimization for Computer Experiments
Plot methods for computer experiments design and surrogate
Dictionaries for reading microdata surveys from IBGE
A Simple Implementation and Demonstration of Gradient Boosting
Compute Recency Frequency Monetary Scores for your Customer Data
Defines some physical constants and dielectric functions
commonly used in optics, plasmonics
R Interface to the ZEIT ONLINE Content API
Detection of Differential Item Functioning (DIF) in Rasch Models
by Boosting Techniques
Analyzing and Visualizing Differential Correlation Networks in
Biological Data
Calculates Confidence Intervals for two Dependent Proportions
Functions from the book Solving Differential Equations in R
Metrics of Difference for Comparing Pairs of Maps
Diffusion IRT Models for Response and Response Time Data
Multi-Fidelity Computer Experiments Using the Tuo-Wu-Yu Model
Detection of Statistically Significant Changes in Complex
Biological Networks
Display Differences Between Two Files using Codediff Library
Baseline identification and peak decomposition for x-ray
diffractograms
Projects for Text Version Comparison and Analytics in R
Inference and Analysis for Generalized Quadratic Diffusions
Inference and Analysis for Diffusion Processes via Data
Imputation and Method of Lines
Inference and Analysis for Jump Generalized Quadratic Diffusions
A Penalty Approach to Differential Item Functioning in Rasch
Models
Detection of Differential Item Functioning (DIF) and
Differential Distractor Functioning (DDF) by Non-Linear
Regression Models
Collection of Methods to Detect Dichotomous Differential Item
Functioning (DIF)
Item Focused Trees for the Identification of Items in
Differential Item Functioning
Create Compact Hash Digests of R Objects
An application programming interface for generating null models
of social contacts based on individuals' space use
Data-Informed Link Strength. Combine multiple-relationship
networks into a single weighted network. Impute (fill-in)
missing network links
DIME (Differential Identification using Mixture Ensemble)
A Framework for Dimensionality Reduction
DiNAMIC A Method To Analyze Recurrent DNA Copy Number
Aberrations in Tumors
Hartigan's Dip Test Statistic for Unimodality - Corrected
Bayesian Clustering of Multivariate Data Under the
Dirichlet-Process Prior
Direction Analysis for Pathways and Kinases
Adjusted Means and Proportions by Direct Standardisation
Discrete Laplace Mixture Inference using the EM Algorithm
DiscML: An R package for estimating evolutionary rates of
discrete characters using maximum likelihood
Discordance and Concordance of Transcriptomic Responses
Functions for Discordant Kinship Modeling
Coordinate-Descent Algorithm for Learning Sparse Discrete
Bayesian Networks
Multiple testing procedures for discrete test statistics
Create and Manipulate Discrete Random Variables
Discrete Weibull Distributions (Type 1 and 3)
Data preprocessing, discretization for classification
Discrimination of Alternative Reproductive Tactics (ARTs)
Tools of the Trade for Discriminant Analysis
Modelling Spatial Variation in Disease Risk for Areal Data
Estimate the Gene Expression Levels and Component Proportions of
the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor
Samples
Calculate Dissimilarity Matrix for Dataset with Mixed Attributes
A Pipeline to Analyze Resistance and Tolerance from Drug Disk
Diffusion Assays
2D Hausdorff and Simplex Dispersion Orderings
Disparity Filter Algorithm for Weighted Networks
Create Disposable R Packages for Testing
Utilities for making pairwise comparisons of multivariate data
Distance Sampling Detection Function and Abundance Estimation
Calculates Study Size Required for Distance Sampling
DiSTATIS Three Way Metric Multidimensional Scaling
Computations over Distributed Data without Aggregation
Download Occurrence Data of Vascular Plants in Germany from the
FLORKART Database
Method Functions for Confidence Intervals and to Distill
Information from an Object
Object Oriented Implementation of Distributions
Documentation for 'distr' Family of R Packages
S4 Classes for Elliptically Contoured Distributions
Four Essential Functions for Statistical Distributions Analysis:
A New Functional Approach
Object Oriented Implementation of Probability Models
Estimate and Manage Empirical Distributions
Distribution Classes for Distributions from Rmetrics
Simulation Classes Based on Package 'distr'
Extensions of Package 'distr' for Teaching
Stochastics/Statistics in Secondary School
Estimation and Testing Classes Based on Package 'distr'
Provides tools for quality checks of georeferenced plant species
accessions
Comparative 'Phylogenetic' Analyses of Diversification
A Comprehensive, General Purpose Population Genetics Analysis
Package
Building Diversity Models from Multiple Species Occupancy Models
Functions for re-sampling a community matrix to compute
diversity indices at different sampling levels
Tools for Analysis of Diversity and Similarity in Biological
Systems
Nearest Neighbour Contingency Table Analysis
Distance Measure Based Judgment and Learning
Time Series Regression Models with Distributed Lag Models
Implementation of Adaptive or Non-Adaptive Differentiable Lasso
and SCAD Penalties in Linear Models
Bayesian and Likelihood Analysis of Dynamic Linear Models
Distributed-Lag Linear Structural Equation Modelling
Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model
Dynamic Modeling and Parameter Estimation in ODE Models
Delete or Merge Regressors for linear model selection
DMR Detection by Non-Homogeneous Hidden Markov Model from
Methylation Array Data
Delete or Merge Regressors Algorithms for Linear and Logistic
Model Selection and High-Dimensional Data
Functions and data for "Data Mining with R"
Functions and Data for the Second Edition of "Data Mining with
R"
Tools for Analysing Forensic Genetic DNA Data
Integrative Analysis of Omics Data in Terms of Network,
Evolution and Ontology
Differential Network Local Consistency Analysis
Analysis of Discretely Observed Linear
Birth-and-Death(-and-Immigration) Markov Chains
Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
Provides Docstring Capabilities to R Functions
Run 'roxygen2' on (Chunks of) Single Code Files
Extract Data Tables and Comments from Microsoft Word Documents
Functions for Acceptance Sampling Ideas originated by H.F. Dodge
Full Factorials, Orthogonal Arrays and Base Utilities for DoE
Packages
Rare Variant Association Test Based on Position Density
Estimation
Wrapper Package for Design of Experiments Functionality
A Universal Foreach Parallel Adaptor using the Future API of the
'future' Package
ADI (Average Dominance Index), Social Network Graphs with Dual
Directions, and Music Notation Graph
R Console Bindings for the 'Domino Command-Line Client'
Foreach Parallel Adaptor for the Rmpi Package
Foreach Parallel Adaptor for the 'parallel' Package
Foreach parallel adapter for the rredis package
Generic Reproducible Parallel Backend for 'foreach' Loops
Planning and Analyzing Dose Finding Experiments
Foreach Parallel Adaptor for the 'snow' Package
Enhanced Foreign Function Interface Supporting Long Vectors
Dot-and-Whisker Plots of Regression Results
Survivor Function Estimation for Doubly Interval-Censored
Failure Time Data
Test against parametric regression function
Differential Exon Usage Test for RNA-Seq Data via Empirical
Bayes Shrinkage of the Dispersion Parameter
Local Linear Hazard Estimation with Do-Validated and
Cross-Validated Bandwidths
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's
Book Measuring Market Risk
A Tool to Downsize Large Workflows for Testing
RStudio Addin for Teaching and Learning Data Manipulation Using
'dplyr'
Dirichlet Process Mixture model simulation for clustering and
image segmentation
Data Pre-Processing and Visualization Functions for
Classification
Dirichlet Process Weibull Mixture Model for Survival Data
Methods for Dimension Reduction for Regression
Data Representation: Bayesian Approach That's Sparse
Regularized Estimation of Dynamic Linear Regression in the
Presence of Autocorrelated Residuals (DREGAR)
Doubly Robust Generalized Estimating Equations
Imputing Dropout Events in Single-Cell RNA-Sequencing Data
Discontinuous Regression and Image Processing
Regression and association models for repeated categorical data
Dual Empirical Likelihood Inference under Density Ratio Models
in the Presence of Multiple Samples
Analyze Drop Out of an Experiment or Survey
Dose-Response Modeling with Smoothing Splines
Doubly-Robust Nonparametric Estimation and Inference
Implementation of a Machine Learning Framework for Predicting
Drugs Side Effects
Dynamical Systems Approach to Infectious Disease Epidemiology
Discretization-Based Direct Random Sample Generation
Bayesian subgroup analysis in clinical trials
Dynamic Systems Estimation (Time Series Package)
Density Surface Modelling of Distance Sampling Data
A Language to Facilitate Simulation and Visualization of
Two-Dimensional Dynamical Systems
Spatial Modelling for Distance Sampling Data
Tests and Confidence Intervals on Directly Standardized Rates
for Several Methods
Analyze Two Choice Reaction Time Data with the D*M Method
Recursive Partitioning for Discrete-Time Survival Trees
Exploring Disease Similarity in Terms of Dysfunctional
Regulatory Mechanisms
A Wrapper of the JavaScript Library 'DataTables'
Simplifying Descriptive Frequencies and Statistics
Cell Type Deconvolution from Gene Expressions
Comparison of Binary Diagnostic Tests in a Paired Study Design
Analysis of Diffusion Weighted Imaging (DWI) Data
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted
for Unequal Variances and Unequal Sample Sizes
Suite of functions related to discrete-time discrete-state
Markov Chains
Estimation and Comparison of Dynamic Treatment Regimes
Learning Algorithms for Dynamic Treatment Regimes
DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and
Q-Learning
Time Series Clustering Along with Optimizations for the Dynamic
Time Warping Distance
Time-Weighted Dynamic Time Warping for Satellite Image Time
Series Analysis
Dual Scaling Analysis of Multiple Choice Data
Simple Client for the DuckDuckGo Instant Answer API
Create dummy/indicator variables flexibly and efficiently
Automatic Creation of Dummies with Support for Predictive
Modeling
Software implementation of step-down and step-up Dunnett test
procedures
Dunn's Test of Multiple Comparisons Using Rank Sums
Bayesian inference from count data using discrete uniform priors
Discrete variations of a fractional Brownian motion
Analyze Dose-Volume Histograms and Check Constraints
Parametric Regression for Discrete Response
Interface to 'Dygraphs' Interactive Time Series Charting Library
Dynamically visualized probability distributions and their
moments
Dynamic Hazard Models using State Space Models
Methods for Detection of Clusters in Hierarchical Clustering
Dendrograms
Implementation of the Dynamic TOPMODEL Hydrological Model
Full Interactive GUI for Dynamic Biplot in R
Denoising and clustering for dynamical image sequence (2D or
3D)+T
Resisting Neighbor Label Attack in a Dynamic Network
Dynamic Nomograms for Linear, Generalized Linear and
Proportional Hazard Models
Fast Fourier Transform to Identify Associations Between Time
Course Omics Data
Companion Package to "Dynamic Prediction in Clinical Survival
Analysis"
Dynamic Simulations of Autoregressive Relationships
Methods for Estimating Optimal Dynamic Treatment Regimes
Estimation and Prediction of Skewed Spatial Processes
Misc Functions of the Department of Statistics, Probability
Theory Group (Formerly: E1071), TU Wien
Plots of the Empirical Attainment Function
Multiple Locus Association Mapping on a Genome-Wide Scale
Dynamic Web-Based Analytics for the Energy Industry
Early Warning Signals Toolbox for Detecting Critical Transitions
in Timeseries
Derive a Color Palette from a Particular Location on Earth
Efficient Approximate Bayesian Computation Sampling Schemes
Analysis of variance and other important complementary analyzes
Utility functions for working with mark-recapture data
Easily Build and Evaluate Machine Learning Models
Tools to Easily Read/Write NetCDF Files into/from
Multidimensional R Arrays
Sample Size Estimation for Experimental Designs
Search and Retrieve Scientific Publication Records from PubMed
Easy Interface to the Statistical Disclosure Control Package
'sdcTable'
Evaluation of stratified genome-wide association meta-analysis
results
Ensemble Forecast Verification for Large Data Sets
Entropy reweighting to create balanced samples
Sample Size Calculation Method for Cost-Effectiveness Studies
Based on Expected Value of Perfect Information
Empirical Bayes Thresholding and Related Methods
Empirical Bayes Estimation of Dynamic Bayesian Networks
Genotyping and SNP Detection using Next Generation Sequencing
Data
Empirical Bayesian Lasso and Elastic Net Methods for Generalized
Linear Models
Ensemble-Based Methods for Class Imbalance Problem
Genotyping and SNP calling using single-sample next generation
sequencing data
Programmatic Access to the European Central Bank's Statistical
Data Warehouse (SDW)
Simulation from Endpoint-Conditioned Continuous Time Markov
Chains
Elliptic Distribution and Lambda Option Pricing Model
Functions for Spatial Point Pattern Analysis
Equal Covariance Functions Testing by L2-Norm and Sup-Norm
Embedding Interactive Charts Generated with ECharts Library into
Shiny Applications
Efficient calculation of fine structure isotope patterns via
Fourier transforms of simplex-based elemental models
Environment Based Clustering for Interpretable Predictive Models
in High Dimensional Data
Dissimilarity-Based Functions for Ecological Analysis
Programmatic Interface to the Web Service Methods Provided by UC
Berkeley's Natural History Data
Spatial Analysis of Phenotypic, Genotypic and Environmental Data
A community modeling foundation for Eco-Hydrology
"A practical guide to ecological modelling - using R as a
simulation platform"
Coalescent-Based Simulation of Ecological Communities
General Analysis of Various Economics Demand Systems
Ecological Regression using Aggregate and Individual Data
An R Interface to Brazilian Central Bank and Sidra APIs and the
IPEA Data
Simulating Community Assembly and Ecological Diversification
Using Ecospace Frameworks
Procedures for Ecological Assessment of Surface Waters
Non-Parametric Multiple Change-Point Analysis of Multivariate
Data
Exploratory Data Analysis using Random Forests
Exploratory and Descriptive Event-Based Data Analysis
Read Data from European Data Format (EDF and EDF+) Files
More Powerful Unconditional Testing of Negative Binomial Means
for Digital Gene Expression Data
Network Reconstruction and Changepoint Detection
Simultaneous Edit-Imputation for Continuous Microdata
Parsing, Applying, and Manipulating Data Cleaning Rules
Dynamic Model Averaging with Grid Search
Estimation of the Effective Dimension Reduction ('EDR') Space
Provides Tools for Dimension Reduction Methods
Compute and Decompose Inequality in Education
Exploring Election and Census Highly Informative Data Nationally
for Australia
Read and Preprocess Fluorescence Excitation-Emission Matrix
(EEM) Data
Tools for Pre-Processing Emission-Excitation-Matrix (EEM)
Fluorescence Data
Convenience Functions for Education Data
Simulate and Evaluate Time Series for Environmental Epidemiology
Utility Functions for Exploratory Factor Analysis
Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images
Bayesian Effect Fusion for Categorical Predictors
Effect Displays for Linear, Generalized Linear, and Other Models
Test changes of a grouped response relative to baseline
Visualization of Categorical Response Models
Efficient Initials for Computing the Maximal Eigenpair
The Causal Effects for a Causal Loglinear Model
Extensions for 'ggplot2', to Align Plots, and Set Panel Sizes
Hierarchical Modelling of Faecal Egg Counts
Tool for ego-centric measures in Social Network Analysis
Exploration and Graphics for RivEr Trends (EGRET)
Exploration and Graphics for RivEr Trends (EGRET) Confidence
Intervals
R Wrapper for the Energy Information Administration (EIA) API
Generates (dense) matrices that have a given set of eigenvalues
Semiparametric factor and regression models for symmetric
relational data
Computes confidence intervals for principal components
eiPack: Ecological Inference and Higher-Dimension Data
Management
An algorithm for reducing errors-in-variable bias in simple
linear regression
Ecological Inference with individual and aggregate data
Empirical Likelihood (EL) for Comparing Two Survival Functions
Enhanced Least Absolute Shrinkage and Selection Operator
Regression Model
Replicar metodologia de SPE/MF para calculo de elasticidade de
receita
General Purpose Interface to 'Elasticsearch'
Ising Network Estimation using Elastic Net and k-Fold
Cross-Validation
Elastic-Net for Sparse Estimation and Sparse PCA
A Lightweight Interface for Interacting with Elasticsearch from
R
Collection of functions for statistical election audits
Functions for election audits using stratified random samples
R Functions to Download and Clean Brazilian Electoral Data
A Set of R6 Classes & a Shiny Application for Reducing Elemental
LA-ICPMS Data from Solid Structures
Data Sets, Functions and Examples from the Book: "The Elements
of Statistical Learning, Data Mining, Inference, and
Prediction" by Trevor Hastie, Robert Tibshirani and Jerome
Friedman
Load Associated Press Election Results with Elex
Sampling from a Empirical Likelihood Bayesian Posterior of
Parameters Using Hamiltonian Monte Carlo
Functions for drawing ellipses and ellipse-like confidence
regions
Implementation of ELM (Extreme Learning Machine ) algorithm for
SLFN ( Single Hidden Layer Feedforward Neural Networks )
Extreme Learning Machine for Survival Analysis
Model-Based Gene Clustering for Genomics Data from
Paired/Matched Designs
Preference Rating for Visual Stimuli Based on Elo Ratings
Animal Dominance Hierarchies by Elo Rating
Empirical Likelihood Analysis for the Cox Model and
Yang-Prentice (2005) Model
Data Management Tools for Real-Time Monitoring/Ecological
Momentary Assessment Data
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Evolutionary Monte Carlo (EMC) algorithm
Evolutionary Monte Carlo (EMC) Methods for Clustering
Computation and Visualization of Empirical Joint Distribution
(Empirical Joint CDF)
EM Algorithm for Model-Based Clustering of Finite Mixture
Gaussian Distribution
Empirical Mode Decomposition and Hilbert Spectral Analysis
Support Functions and Data for "Ecological Models and Data"
Estimating and Mapping Disaggregated Indicators
Exponentially Modified Gaussian (EMG) Distribution
Evaluation of Modeling without Information Leakage
EM Algorithms for Estimating Item Response Theory Models
Estimation of Wastewater Emissions in Combined Sewer Systems
Read and Write Ecological Metadata Language Files
Fitting log-Linear Models in Sparse Contingency Tables
Contrasts in Mixed Effects for EMMIX Model with Random Effects 2
The EM Algorithm and Skew Mixture Distribution
Fitting Unrestricted Multivariate Skew t Mixture Models
A Maximum Likelihood Approach to the Analysis of Modularity
Fitting Mixed Models with Known Covariance Structures
Tools for Environmental and Ecological Survey Design
Eye Movement Analysis Package for Fixation and Saccade Detection
Expected Maximum Profit Classification Performance Measure
Routines for Performing Empirical Calibration of Observational
Study Estimates
Simulation-Based False Discovery Rate in RNA-Seq
Empirical Likelihood Ratio for Censored/Truncated Data
Empirical Likelihood Ratio Test for Two Samples with Censored
Data
Epimed Solutions Collection for Data Editing, Analysis, and
Benchmarking of Health Units
Exact Multinomial Test: Goodness-of-Fit Test for Discrete
Multivariate data
Main Package of the EMU Speech Database Management System
Entropy Minimization over Variable Clusters
Represent Ordered Lists and Pairs as Strings
R Package for Fitting Multinomial Probit Models with Endogenous
Selection
Bayesian Measurement Models for Analyzing Endorsement
Experiments
Transmissions and Receptions in an End to End Network
E-Statistics: Multivariate Inference via the Energy of Data
Data Published by the United States Federal Energy Regulatory
Commission
Data sets from "Introductory Statistics for Engineering
Experimentation"
English and European Soccer Results 1871-2016
Automated Runs and Evaluations of Ecological Niche Models
Ensemble Partial Least Squares Regression
An R Package for the Analysis of Multiple ChIP-Seq Data
Enrichment assessment of virtual screening approaches
Methods to Enrich R Objects with Extra Components
Extensible Package for Parallel, Batch Training of Base Learners
for Ensemble Modeling
Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Extensible Package for Cross-Validation-Based Integration of
Base Learners
Extensible Package for Principal-Component-Regression-Based
Heterogeneous Ensemble Meta-Learning
Extensible Classes and Methods for Penalized-Regression-Based
Integration of Base Learners
Entropy Partitioning to Measure Diversity
Estimation of Entropy, Mutual Information and Related Quantities
Estimation of Entropy and Related Quantities
Tools for Exploring Differential Shannon Entropy, Differential
Coefficient of Variation and Differential Expression
Detection of Structural Changes in Climate and Environment Time
Series
Various Utilities for Microbial Genomics and Metagenomics
GC/LC-MS Data Analysis for Environmental Science
Isotope Pattern, Profile and Centroid Calculation for Mass
Spectrometry
Peak Picking for High Resolution Mass Spectrometry Data
Environmental Probabilistic Risk Assessment Tools
Statistical Analysis of Environmental Space-Time Processes
Package for Environmental Statistics, Including US EPA Guidance
Statistical Functions for the Censored and Uncensored
Epanechnikov Distribution
Gaussian Approximation of Bayesian Binary Regression Models
A Package for Statistical Analysis in Epidemiology
Elementary Epidemiological Functions for Epidemiology and
Biostatistics
Implements Hierarchical Bayesian Models for Epidemiological
Applications
Handling, Visualisation and Analysis of Epidemiological Contacts
Epidemiological Tool for Contact Tracing
Tools to Retrieve Economic Policy Institute Data Library
Extracts
EpiEstim: a package to estimate time varying reproduction
numbers from epidemic curves
Flexible Modelling Functions for Epidemiological Data Analysis
Spatial and Network Based Individual Level Models for Epidemics
Mathematical Modeling of Infectious Disease
Tools for the Analysis of Epidemiological Data
Basic Sensitivity Analysis of Epidemiological Results
Density Estimation with Soft Information by Exponential
Epi-splines
Detecting Epistatic Selection with Partially Observed Genotype
Data
Constructing an Epistemic Model for the Games with Two Players
Conversion Between Epidemiological Weeks and Calendar Dates
EPoC (Endogenous Perturbation analysis of Cancer)
EQS Output Conversion to lavaan Functions
Tools for analyzing eQTL experiments: A complementary to Karl
Broman's 'qtl' package for genome-wide analysis
Examine Measurement Invariance via Equivalence Testing and
Projection Method
Direct, Chain and Average Equating Coefficients with Standard
Errors Using IRT Methods
Provides Tests and Graphics for Assessing Tests of Equivalence
Estimate Graphical Models from Multiple Types of Datasets and
Construct Networks
Automated Spectral Deconvolution, Alignment, and Metabolite
Identification in GC/MS-Based Untargeted Metabolomics
Nonparametric Multiple Expectile Regression via ER-Boost
Fitting Tails by the Empirical Residual Coefficient of Variation
Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Fit, Simulate and Diagnose Exponential-Family Models for
Networks with Count Edges
Fit, Simulate and Diagnose Exponential-Family Random Graph
Models to Egocentrically Sampled Network Data
ERG Modeling Based on Graphlet Properties
Local Health Department network data set
Fit, Simulate and Diagnose Exponential-Family Models for
Rank-Order Relational Data
User-specified terms for the statnet suite of packages
Significance Analysis of Event-Related Potentials Data
Event-Related Potential (ERP) Data Exploration Made Easy
Event-related potentials (ERP) analysis, graphics and utility
functions
Estimate Number of Latent Factors and Factor Matrix for Factor
Analysis
Extended Empirical Saddlepoint Density Approximation
Effect Size Computation for Meta Analysis
ESEA: Discovering the Dysregulated Pathways based on Edge Set
Enrichment Analysis
Toolkit for the simulation of financial assets and interest
rates models
Ensemble of Subset of K-Nearest Neighbours Classifiers for
Classification and Class Membership Probability Estimation
Data Preparation During and After the Use of the Experience
Sampling Methodology (ESM)
Joint Quantile and Expected Shortfall Regression
Calibrating Parameters for the Samejima's Continuous IRT Model
Estimation of Heritability in High Dimensional Sparse Linear
Mixed Models using Variable Selection
Tools for Assessing Estimability of Linear Predictions
Perform the Joint Graphical Lasso and Selects Tuning Parameters
Visualization and Estimation of Effect Sizes
Modeling Earthquake Data Using ETAS Model
Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
Ethnicity Annotation from Whole Exome Sequencing Data
Extract-Transform-Load Framework for Medium Data
Utility Functions to Execute Standard Extract/Transform/Load
Operations (using Package 'ff') on Large Data
Computes Moments of Univariate Truncated t Distribution
Client for 'etcd', a 'Key-value' Database
eulerian: A package to find eulerian paths from graphs
R Interface to the Europe PubMed Central RESTful Web Service
Historical Populations of European Cities, 1500-1800
Bayesian Single Arm Sample Size Calculation Software
Extreme Value Analysis with Goodness-of-Fit Testing
Parsing and Evaluation Tools that Provide More Details than the
Default
Collection of Model Evaluation Measure Functions
Information Security Quantified Risk Assessment Toolkit
Modelling Actual, Potential and Reference Crop
Evapotranspiration
Functions for Extreme Value Distributions
Bayesian Analysis in Extreme Value Theory
A Powerful Tool to Quickly Compare Huge Lists and Draw Venn
Diagrams
Reporting Tools for Sensitivity Analysis of Evidence Factors in
Observational Studies
Extreme Value Mixture Modelling, Threshold Estimation and
Boundary Corrected Kernel Density Estimation
Comparative and Population Genetic Analyses
Tools for Evolutionary Quantitative Genetics
Evolutionary Parameter Estimation for 'Repast Simphony' Models
Mean of order p, peaks over random threshold Hill and high
quantile estimates
Evolutionary Learning of Globally Optimal Trees
Goodness-of-Fit Tests for the Exponential and Two-Parameter
Weibull Distributions
Exact Tests and Confidence Intervals for 2x2 Tables
Exact P-Values and Matching Confidence Intervals for Simple
Discrete Parametric Cases
Inductive Confidence Intervals for the difference between two
proportions
Monte Carlo Exact Tests for Log-linear models
Exact solution paths for regularized LASSO regressions with L_1
penalty
Exact Distributions for Rank and Permutation Tests
Help for Writing Unit Tests Based on Function Examples
Confidence regions for exceedance sets and contour lines
Convenient Data Exchange with Microsoft Excel
Excerpt Structuring Comments from Your Code File and Set a Table
of Contents
Excursion Sets and Contour Credibility Regions for Random Fields
Calls Copy Number Variants from Targeted Sequence Data
Convert Gene EXPression Data to FBA FLUXes
Expanding Ploidy and Allele-Frequency on Nested Subpopulations
Modular Differential Evolution for Experimenting with Operators
experiment: R package for designing and analyzing randomized
experiments
Modeling without data using expert opinion
Exponential Integral and Incomplete Gamma Function
Explanation of Predictions for Classification and Regression
Models
Interactive Interfaces for Results Exploration
Exploratory analysis with the singular value decomposition
Calculate density dependent likelihood of a phylogenetic tree
Spatial analysis of extra-pair paternity
Rapid Implementation of Machine Learning Algorithms for Genomic
Data
Data Sets from "Forecasting with Exponential Smoothing"
Tables with Labels and Some Useful Functions from Spreadsheets
and 'SPSS' Statistics
Fast, Reliable and Elegant Reproducible Research
Convenience Functions for Botanists to Create Specimens Indices
Extending the Range of Functions for Probability Distributions
Data Manipulation Extensions of 'Dplyr' and 'Tidyr'
Constructs the Exterior Match from Two Matched Control Groups
Maximum penalized likelihood estimation with extended lasso
penalty
Extra-binomial approach for pooled sequencing data
Categorical Data Analysis and Visualization
Additional Univariate and Multivariate Distributions
Extremely Randomized Trees (ExtraTrees) Method for
Classification and Regression
Estimation of Extreme Conditional Quantiles and Probabilities
Extreme Value Statistics and Quantile Estimation
Estimation of Extreme Value Dependence for Time Series Data
Estimate Lower Extreme Quantile with the Censored Weibull MLE
and Censored Weibull Mixture
Easy Analysis and Visualization of Factorial Experiments
Easy Interface to Effective Concentration Calculations
selects significant non-additive interaction between two
variables using fast GLM implementation
Avoid the Typical Working Directory Pain When Using 'knitr'
provide an easy to use framework to conduct simulation
Fast Covariance Estimation for Sparse Functional Data
Access to Facebook API V2 via a Set of S4 Classes
Bayesian Sparse Factor Analysis model for the inference of
pathways responsive to drug treatment
Combination of Factorial Methods and Cluster Analysis
Extract and Visualize the Results of Multivariate Data Analyses
Automatic Description of Factorial Analysis
Multivariate Exploratory Data Analysis and Data Mining
Simultaneous Change-Point and Factor Analysis
Machine Learning with Higher-Order Factorization Machines
Hierarchical Algorithm for Post-Hoc Testing
Graphical Presentation of Simple Contrasts
Bayesian quantile regression factor models
Identification of the Factors Affecting Species Richness
Bayesian Estimation of (Sparse) Latent Factor Stochastic
Volatility Models
Perform Factorial Analysis from 'FactoMineR' with a Shiny
Application
Scores the FACT and FACIT Family of Patient-Reported Outcome
Measures
thin wrapper for the Factual.com server API
Variable Selection for Supervised Classification in High
Dimension
Distributions that are Sometimes Used in Hydrology
Data from the Book "Multivariate Statistical Modelling Based on
Generalized Linear Models", First Edition, by Ludwig Fahrmeir
and Gerhard Tutz
Faisal Conjoint Model: A New Approach to Conjoint Analysis
Simulates Data from a Data Frame of Different Variable Types
Finding Allele-Specific Copy Number in Next-Generation
Sequencing Data
Finding Allele-Specific Copy Number in Whole-Exome Sequencing
Data
Family Age-at-Onset Data Simulation and Penetrance Estimation
Probabilities for Pedigrees Given DNA Data
A Convex Formulation for Modeling Interactions with Strong
Heredity
Maximum Likelihood and Bayesian Estimation of Univariate
Probability Distributions
Factor Analysis for Multiple Testing (FAMT) : simultaneous tests
under dependence in high-dimensional data
Penalized Likelihood Factor Analysis via Nonconvex Penalty
Building Kriging Models from FANOVA Graphs
Visualisation of Sequential Probability Distributions Using Fan
Charts
Download Data from the FAOSTAT Database of the Food and
Agricultural Organization (FAO) of the United Nations
Influential Case Detection Methods for Factor Analysis and
Structural Equation Models
Modelization for Functional AutoRegressive Processes
Functions and Datasets for Books by Julian Faraway
A Fast and Scalable Joint Estimator for Learning Multiple
Related Sparse Gaussian Graphical Models
Rmetrics - Analysing and Modelling Financial Assets
Implementation of the Fourier Amplitude Sensitivity Test (FAST)
Fast Estimation of a Covariance Matrix by Banding the Cholesky
Factor
A Fast Solver for Parameterized LP Problems, Constrained L1
Minimization Approach to Sparse Precision Matrix Estimation and
Dantzig Selector
Fast Hierarchical Clustering Routines for R and Python
Significant Interval Discovery with Categorical Covariates
Lasso and Elastic-Net Penalized Cox's Regression in High
Dimensions Models using the Cocktail Algorithm
Fast, Low Memory-Footprint Digests of R Objects
Fast Creation of Dummy (Binary) Columns from Categorical
Variables
Raster Image Processing and Vector Recognition
Fast Rcpp implementation of Gauss-Hermite quadrature
Efficiently Using Gaussian Processes with Rcpp and RcppEigen
Fast Drawing and Shading of Graphs of Statistical Distributions
Robust Algorithm for Principal Component Analysis
Hierarchical Independent Component Analysis: a Multi-Scale
Sparse Non-Orthogonal Data-Driven Basis
FastICA Algorithms to Perform ICA and Projection Pursuit
Learn from Training Data then Quickly Fill in Missing Data
Efficient Jonckheere-Terpstra Test Statistics for Robust Machine
Learning and Genome-Wide Association Studies
A Fast Multiple-Kernel Method Based on a Low-Rank Approximation
Fast Probabilistic Record Linkage with Missing Data
Fast Computation of Multivariate M-estimators
FastPCS Robust Fit of Multivariate Location and Scatter
Foundations and Applications of Statistics Using R
Foundations and Applications of Statistics Using R (2nd Edition)
Fits the FastRCS Robust Multivariable Linear Regression Model
'fastText' Wrapper for Text Classification and Word
Representation
Fast Interactive Framework for Web Scripting Using R
Fast Utility Function for Time Parsing and Conversion
Two-Locus Family-Based Association Test with Polytomic Outcome
Kiener Distributions and Fat Tails in Finance
Functions and Datasets for "Forest Analytics with R"
An Extensible Approach to Flux Balance Analysis
Gene by Environment Interaction and Conditional Gene Tests for
Nuclear Families
Algorithm for Searching the Space of Gaussian Directed Acyclic
Graph Models Through Moment Fractional Bayes Factors
FISH Based Normalization and Copy Number inference of SNP
microarray data
Analyzing and Managing Facebook Ads from R
Association Football (Soccer) Ranking via Poisson Regression
Fast Algorithms to Bootstrap Receiver Operating Characteristics
Curves
Basics of Certificates and Structured Products Valuation
Change Point Analysis in Functional Data
Inference of Fuzzy Cognitive Maps (FCMs)
Rmetrics - Bivariate Dependence Structures with Copulae
A Method to Search for Differentially Expressed Genes and to
Detect Recurrent Chromosomal Copy Number Aberrations
Measuring functional diversity (FD) from multiple traits, and
other tools for functional ecology
Functional Data Analysis: K-Mean Alignment
Functional Data Analysis in a Mixed Model Framework
Analysis of Variance for Univariate and Multivariate Functional
Data
Functional Data Analysis and Empirical Dynamics
Functional Data Analysis and Partial Differential Equations;
Statistical Analysis of Functional and Spatial Data, Based on
Regression with Partial Differential Regularizations
Interval Testing Procedure for Functional Data
Functional Data Analysis and Utilities for Statistical Computing
Multivariate Dependence with FDG Copulas
Dynamic Model Averaging and Dynamic Model Selection for
Continuous Outcomes
Permutation-Based FDR Point and Confidence Interval Estimation
False Discovery Rate Procedures Under Discrete and Heterogeneous
Null Distributions
Compute Sample Size that Meets Requirements for Average Power
and FDR
FDR-Control in Multiscale Change-Point Segmentation
Estimation of (Local) False Discovery Rates and Higher Criticism
Frequency Distribution Tables, Histograms and Polygons
Local Inferential Feature Significance for Multivariate Kernel
Density Estimation
Creates a Model Matrix via Feature Hashing with a Formula
Interface
Feature Extraction for Discretely-Sampled Functional Data
Some Helper Functions that Help Create Features from Data
Fechnerian Scaling of Discrete Object Sets
Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Client Package for the U.S. Federal Register API
Fixed Effects Nonlinear Maximum Likelihood Models
Estimation and Fit Assessment of Frailty Exponential Random
Graph Models
fExpressCertificates - Structured Products Valuation for
ExpressCertificates/Autocallables
Rmetrics - Extreme Financial Market Data
memory-efficient storage of large data on disk and fast access
functions
Basic Statistical Functions for Package 'ff'
Force field simulation for a set of points
Forgetting Factor Methods for Change Detection in Streaming Data
Generate, Visualise, and Evaluate Fast-and-Frugal Decision Trees
Fast FFT and DCT Based on the FFTW Library
Wrapper for 'FFTW3' Includes: One-Dimensional Univariate,
One-Dimensional Multivariate, and Two-Dimensional Transform
Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Fractional Gaussian Noise and power law decay time series model
fitting
Feature Grouping and Selection Over an Undirected Graph
Fractional Hot Deck and Fully Efficient Fractional Imputation
Tests for Right and Interval-Censored Survival Data Based on the
Fleming-Harrington Class
Provide functions for forest inventory calculations
Classical, Reloaded and Adaptive FastICA Algorithms
A Lightweight and Flexible Web Framework
A Biostatisticians Toolbox for Various Activities, Including
Plotting, Data Cleanup, and Data Analysis
Map Data to Visualize the Fifty U.S. States with Alaska and
Hawaii Insets
File-Backed Matrix Class with Convenient Read and Write Access
Chunk Processing or Split-Apply-Combine on Delimited Files and
Distributed Dataframes
Effective File Navigation from the R Console
Rmetrics - Economic and Financial Data Import
Financial Analysis and Regression Diagnostic Analysis
Financial Instrument Model Infrastructure for R
Classifies implicit trading activity from market quotes and
computes the probability of informed trading
Time Value of Money, Time Series Analysis and Computational
Finance
Covariance Matrix Estimation and Regularization for Finance
Find all root(s) of the equation and Find root(s) of the
equation by dichotomy
Python Tools to Find an Acceptable Python Binary
A View Generator for Multidimensional Data
Functions for Processing Binary Fingerprint Data
Computation of the Probability of Ruin Within a Finite Time
Horizon
Financial Data from U.S. Securities and Exchange Commission
Fisheye and Hyperbolic-space-alike Interactive Visualization
Tools in R
Iterative FISH-based Calibration of Hi-C Data
Dataset of Measurements of Fish Species at Kirkkojarvi Lake,
Finland
Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta
Log-Normal Models
An Analytical Tool for Aquatic Respirometry
FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
Help to Fit of a Parametric Distribution to Non-Censored or
Censored Data
FITS (Flexible Image Transport System) Utilities
fitTetra is an R package for assigning tetraploid genotype
scores
Data and Code Behind the Stories and Interactives at
'FiveThirtyEight'
The Distribution of Distances Between Discrete Events in Fixed
Time
Fixed Sequence Multiple Testing Procedures
Feature-Based Landscape Analysis of Continuous and Constrained
Optimization Problems
Fits Piecewise Constant Models with Data-Adaptive Knots
Implementation of optimal hierarchical clustering
R Markdown Format for Flexible Dashboards
Tools to Work with the Flexible Dirichlet Distribution
Flexible Parametric Models for Censored and Truncated Data
Flexible Parametric Survival and Multi-State Models
Hidden Markov Model for Solar Geolocation Archival Tags
Process Synchronization Using File Locks
Statistical Methods for the (Regional) Analysis of Flood
Frequency
Tools for Interacting with the Brazilian Flora 2020
Cytometric Diversity Indices from 'FlowJo' Workspaces
Tools for characterizing flowering traits
Forecasts future values of a univariate time series
Streamlining Design and Deployment of Complex Workflows
Daily Streamflow Trend and Change Point Screening
Path algorithm for the general Fused Lasso Signal Approximator
Multi-Threaded Multidimensional Fixed Size Subset Sum Solver and
Extension to General-Purpose Knapsack Problem
Flux rate calculation from dynamic closed chamber measurements
Data Sets from "Forecasting: Methods and Applications" by
Makridakis, Wheelwright & Hyndman (1998)
Factorial Experiments with Minimum Level Changes
A Flexible Modelling Environment for Inverse Modelling,
Sensitivity, Identifiability and Monte Carlo Analysis
Filtered Monotonic Polynomial IRT Models
Variable Selection in Finite Mixture of AFT Regression and FMR
Functions for Medical Statistics Book with some Demographic Data
Regression Models with Finite Mixtures of Skew Heavy-Tailed
Errors
Variance estimation of FMT method (Fully Moderated t-statistic)
Rmetrics - Analysing and Modeling Multivariate Financial Return
Distributions
Fast Nearest Neighbor Search Algorithms and Applications
Nonlinear and Chaotic Time Series Modelling
Summarizes CRAN Check Results in the Terminal
A Self-Describing Dataset Format and Interface
Fonts with 'Bitstream Vera Fonts' License
Additional 'ggplot2' Themes Using 'Hind' Fonts
Additional 'ggplot2' Themes Using 'M+' Fonts
visualisation and analysis of food web networks
Rmetrics - Pricing and Evaluating Basic Options
Foraminifera and Community Ecology Analyses
Tools for Working with Categorical Variables (Factors)
Provides Foreach Looping Construct for R
Forecasting Functions for Time Series and Linear Models
Convenient Functions for Ensemble Time Series Forecasts
Forecasting for Stationary and Non-Stationary Time Series
Floating-Point Genetic Algorithms with Statistical Forecast
Based Inheritance Operator
Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Statistical Methods in Forensic Genetics
Statistical tools for the interpretation of forensic DNA
mixtures
Visualizes Random Forests with Feature Contributions
Design-Based Global and Small-Area Estimations for Multiphase
Forest Inventories
Advanced Forest Plot Using 'grid' Graphics
Imputation of Missing Values Through a Forward Imputation
Algorithm
Functions from the 2nd Italian Forest Inventory (INFC)
Elementary arithemtic in formal series rings
Utilities for Formulas, Expressions, Calls and Other Objects
Palaeoecological and Palaeogeographical Analysis Tools
Bayesian 4 Parameter Item Response Model
Restricted MLE for Functional Principal Components Analysis
Two Dimensional Functional Principal Component Analysis
Reliable Comparison of Floating Point Numbers
Rmetrics - Portfolio Selection and Optimization
Computing the noncentrality parameter of the noncentral F
distribution
Data for "Forecasting: principles and practice"
Data for "Forecasting: Principles and Practice" (2nd Edition)
Approximation of First-Passage-Time Densities for Diffusion
Processes
Testing Hypotheses via Fuzzy P-Value in Fuzzy Environment
Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
Fraction Proliferation via a Quiescent Growth Model
Fractal Time Series Modeling and Analysis
Simulation and Parameter Estimation of Randomized Sierpinski
Carpets using the p-p-p-q-Model
Generate fractal time series with non-normal returns
distribution
Fitting Frailty Models with the EM Algorithm
General Frailty Models: Shared, Joint and Nested Frailty Models
with Prediction
General Semiparametric Shared Frailty Model
Financial Risk Modelling and Portfolio Optimisation with R
Fuzzy Rule-Based Systems for Classification and Regression Tasks
Fast Regularized Canonical Correlation Analysis
Post-Processing EddyPro Full Output File
Statistical algorithms used in common data mining course
Rmetrics - Regression Based Decision and Prediction
Functional Regression using Signal Compression Approach
FREQ: Estimate population size from capture frequencies
Frequency Domain Based Analysis: Dynamic PCA
Functional Time Series: Dynamic Functional Principal Components
Frequency Moving Average Plots (MAP) of Multinomial Data by a
Continuous Covariate
Frequency Profiles Computing and Plotting
Create Frequency Tables with Counts and Rates
Spectral Decomposition of Connectedness Measures
Feature Selection Algorithms for Computer Aided Diagnosis
Fractional Factorial Designs with 2-Level Factors
Catalogues of resolution IV 128 run 2-level fractional
factorials up to 33 factors that do have 5-letter words
Regression Analysis of Fractional Responses
Regression Analysis of Fractional Responses Under Unobserved
Heterogeneity
Regression Analysis of Panel Fractional Responses
The Generalized Hyperbolic Distribution, Related Distributions
and Their Applications in Finance
Simple Fisheries Stock Assessment Methods
Data to Support Fish Stock Assessment ('FSA') Package
Automated Feature Selection from 'caret'
'Rcpp' Implementation of 'FSelector' Entropy-Based Feature
Selection Algorithms with a Sparse Matrix Support
Import and Analysis of OMR Data from FormScanner
Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')
Social Relations Analyses with Roles ("Family SRM")
Lightning Fast Serialization of Data Frames for R
Unified Sequence-Based Association Tests Allowing for Multiple
Functional Annotation Scores
A Wrapper for the API of the Danish Parliament
Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance
Mass Spectrometry Data
Features and Strings for Nonparametric Regression
FTRL Proximal Implementation for Elastic Net Regression
R interface to tslib (a time series library in c++)
Spectral Density Estimation and Comparison for Functional Time
Series
FUzzy GEnetic, a machine learning algorithm to construct
prediction model based on fuzzy logic
Full Text of 'Scholarly' Articles Across Many Data Sources
Convenience Functions by Michael Chirico
Chi-Square and Exact Tests for Non-Parametric Functional
Dependencies
Functional Profiling of Microarray Expression Data
A package for functional data clustering
An algorithm for gene and gene set network inference
Clustering in the Discriminative Functional Subspace
Fungible Coefficients and Monte Carlo Functions
Model-based clustering in group-specific functional subspaces
Exploratory Data Analysis and Data Preparation Tool-Box Book
Simple Utility Providing Terminal Access to all R Functions
Functional Regression for Irregularly Timed Data
Community Detection via Fused Principal Component Analysis
Fused Lasso for High-Dimensional Regression over Groups
A Tiny Utility Providing Polymorphic Operations
Random Matrix Generation and Manipulation
A framework for working in a functional programming paradigm in
R
Interim Analysis of Operational Futility in Randomized Trials
with Time-to-Event Endpoints and Fixed Follow-Up
Unified Parallel and Distributed Processing in R for Everyone
A Future API for Parallel and Distributed Processing using
BatchJobs
A Future API for Parallel and Distributed Processing using
'batchtools'
Find, Characterize, and Explore Extreme Events in Climate
Projections
Exact calculation of fuzzy decision rules for multiple testing
Join Tables Together on Inexact Matching
Multi-Criteria Decision Making Methods for Fuzzy Data
Apply Two Fuzzy Numbers on a Monotone Function
Fuzzy Rank Tests and Confidence Intervals
Fuzzy Stationary Probabilities from a Sequence of Observations
of an Unknown Markov Chain
Statistical Methods for Trapezoidal Fuzzy Numbers
Forward search for Mokken scale analysis
Selecting Variables in Regression Models
Fire Weather Index System and Fire Behaviour Prediction System
Calculations
A package performing Dynamic Bayesian Network inference
Find and Fill Gaps in Metabolic Networks
Grain-Size Statistics and Description of Sediment
A genetic algorithm approach to determine stratum boundaries and
sample sizes of each stratum in stratified sampling
Abbreviating Items Measures using Genetic Algorithms
Framework for Generalized Subspace Pattern Mining
GAD: Analysis of variance from general principles
A Genetic Algorithm for Learning Directed Acyclic Graphs
First Passage Time Simulation for Gaussian Diffusion Processes
Genetic and Isotopic Assignment Accounting for Habitat
Suitability
Graphical Extension with Accuracy in Parameter Estimation
(GAIPE)
Genetic algorithms and C-steps based LTS (Least Trimmed Squares)
estimation
Fit the Gambin Model to Species Abundance Distributions
Generalized linear and additive models by likelihood based
boosting
Estimating multistate models using gamboost()
Functions and Data for a Course on Modern Regression and
Classification
Generalized Additive Models for Bivariate Conditional Dependence
Structures and Vine Copulas
Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for
Binary Classification
Statistical Estimation of Game-Theoretic Models
Genetic Algorithm for Sequential Symmetric Games
Tools for Calculating Allocations in Game Theory
Generalised Additive Models for Location Scale and Shape
Bimodal Skew Symmetric Normal Distribution
Fitting an Interval Response Variable Using `gamlss.family'
Distributions
Distributions for Generalized Additive Models for Location Scale
and Shape
Fitting Mixed (Inflated and Adjusted) Distributions
Fitting Mixture Distributions with GAMLSS
Fitting non linear parametric GAMLSS models
Spatial Terms in Generalized Additive Models for Location Scale
and Shape Models
Generating and Fitting Truncated `gamlss.family' Distributions
Generalized Additive Mixed Models using 'mgcv' and 'lme4'
classic gamma regression: joint modeling of mean and shape
parameters
Generalized additive mixed model analysis via slice sampling
Robust and Sparse Regression via Gamma-Divergence
Fit Regularization Path for Generalized Additive Models
Gene Association Network-based Pathway Analysis
Genetic Algorithm optimization for real-based and
permutation-based problems
Searching Parsimony Models with Genetic Algorithms
Functions for Drawing Gapped Cluster Heatmap with ggplot2
Authorize and Request Google Analytics Data
Genetic Algorithm (GA) for Variable Selection from
High-Dimensional Data
Greenhouse Gas Flux Calculation from Chamber Measurements
Analyzing Gastric Emptying from MRI or Scintigraphy
Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
Easily Gate or Select Points on a Scatter Plot
Difference measures for multivariate Gaussian probability
density functions
The Greatest Mathematician Since Antiquity
Collection of functions for Gaussian quadrature
Generalize Lambda Distribution and Generalized Bootstrapping
Generalized Beta Distribution of the Second Kind: Properties,
Likelihood, Estimation
Generalized Berk-Jones Statistic for Set-Based Inference
Utilities for processing Rd objects and files
Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data
Hyperparameter Search for Gradient Boosted Trees
Simulation of Real and Complex Numbers and Small Programming
Utilities
Guided Correction Approach for Inherited bias (GCAI.bias)
Simple Peak Alignment for Gas-Chromatography Data
Graph-based two-sample tests for categorical data
'GPU'/CPU Benchmarking in Debian-Based Systems
LASSO and (adaptive) Elastic-Net penalized least squares,
logistic regression, HHSVM and squared hinge loss SVM using a
fast GCD algorithm
Analysis of Geostatistical Count Data using Gaussian Copulas
Concord method for Graphical Model Selection
Datasets for the Book Graphical Data Analysis with R
Wrappers for the Geospatial Data Abstraction Library (GDAL)
Utilities
Various R Programming Tools for Data Manipulation
A Toolbox for the Analysis of Categorical Data in Social
Sciences, and Especially Geometric Data Analysis
Download, slice, and normalize GDELT data
Generalized Diffusion Magnetic Resonance Imaging
Distances and Routes on Geographical Grids
Tools to Work with Google DNS Over HTTPS API
Generalised Estimating Equations (GEE/WGEE) using 'Armadillo'
and S4
Adaptive Association Tests for Multiple Phenotypes using
Generalized Estimating Equations (GEE)
Mediation Analysis for Generalized Linear Models Using the
Difference Method
Modified Variance Estimators for Generalized Estimating
Equations
Calculate Generalized Eigenvalues, the Generalized Schur
Decomposition and the Generalized Singular Value Decomposition
of a Matrix Pair with Lapack
Misspecified Models for Gene-Environment Interaction
File Conversion for 'Gem Infrasound Logger'
Network Meta-Analysis Using Bayesian Methods
Package contains data which is used by GenABEL example and test
functions
Classes and Methods to Use Genetic Algorithms for Feature
Selection
Global ENvironmental ASsessment Information System (GENASIS)
computational tools
Clopper-Pearson Confidence Interval and Generalized Binomial
Distribution
Predict Gender from Names Using Historical Data
Predict Gender from Brazilian First Names
Segmentation and Classification of Accelerometer Data
Gene Expression Clustering and Gene Network
Identification of Periodically Expressed Genes
Bayesian calculation of gene-specific FST from genomic SNP data
Profiling a gene list into GOslim or KEGG function pie
Belief Propagation in Genotype-Phenotype Networks
Genetic Epidemiology Design and Inference
Population Genetic Data Analysis Using Genepop
Generalized Correlations and Initial Causal Path
Goodness of Fit Tests for Logistic Regression Models
Credible Visualization for Two-Dimensional Projections of Data
Blinder-Oaxaca Decomposition for Generalized Linear Model
Generate Data Containing Fake Personally Identifiable
Information
Construct time delay gene regulatory network
Genome-Wide Association Study with SLOPE
Identify Favorable Subsets of Germplasm Collections
Spatial Graph-Theoretic Genetic Gravity Modelling
The Forward Imputation: A Sequential Distance-Based Approach for
Imputing Missing Data
A New, Fast, and Outlier Resistant Hierarchical Clustering
Algorithm
Functions for generating and manipulating binned kernel density
estimates
Path algorithm for generalized lasso problems
Functions for the Bayesian Analysis of GWAS Data
Application of MOSS algorithm to genome-wide association study
(GWAS)
'Plot genome wide values for all chromosomes'
Circular Genomic Permutation using Gwas p-Values of Association
Collection of Tools for Genomic Data Analysis
Plot Publication-Grade Gene and Genome Maps
Simulation of Discrete Random Variables with Given Correlation
Matrix and Marginal Distributions
Generalized Pathmox Approach Segmentation Tree Analysis
Generalized Ridge Trace Plots for Ridge Regression
R Functions for Generalized Simulated Annealing
Spline Based Window Boundaries for Genomic Analyses
Draw and Annotate Maps, Especially Charts of the North Atlantic
Analysis of Geostatistical Data using Bayes and Empirical Bayes
Methods
Analysis and Modeling for Geostatistical Count Data
A geometrical Approach to Differential expression and gene-set
enrichment
3D-Visualization of Geoelectric Resistivity Measurement Profiles
'ggplot2' Faceting Utilities for Geographical Data
Spatial Prediction for Function Value Data
Select Sparse Geoadditive Models for Spatial Prediction
Quantification of the effect of geographic versus environmental
isolation on genetic differentiation
Tools for Geohash Creation and Manipulation
Convert Data from and to 'GeoJSON' or 'TopoJSON'
Web-Processing of Large Gridded Datasets
Data for topographic and Geologic Mapping
Tools for Reading and Writing ISO/OGC Geographic Metadata
Network Visualization in the 'ggplot2' Framework
Geometric Morphometric Analyses of 2D/3D Landmark Data
Interface to www.geonames.org web service
Interface to the Geoparser.io API for Identifying and
Disambiguating Places Mentioned in Text
Geophysics, Continuum Mechanics, Mogi Models, Gravity
Calculating Geographic Range from Occurrence Data
A Package for Generalised Linear Spatial Models
Robust Geostatistical Analysis of Spatial Data
Facilitate Generating of Distance Matrices Used in Package
'spacom' and Plotting Data on Maps
Classes and Methods for Working with Spectral Data with
Space-Time Attributes
Geostatistical Analysis and Design of Optimal Spatial Sampling
Networks
Spatio-Temporal; Inverse Distance Weighting and Radial Basis
Functions with Distance-Based Regression
Geostatistical Modelling with Likelihood and Bayes
Tools to Improve the Use of Geostatistic
An R Plug-in for the Distributed Hydrological Model GEOtop
Interactive exploratory spatial data analysis
Google Encoded Polyline Algorithm Format
Estimation and Fit Diagnostics for Generalized Exponential
Random Graph Models
Germination Indexes for Seed Germination Variables for
Ecophysiological Studies
Generalized Structured Component Analysis (GSCA)
Use and Explore CRU CL v. 2.0 Climatology Elements in R
Download and Aggregate High Frequency Trading Data from Bovespa
Get Landsat 8 Data from Amazon Public Data Sets
Reading Bibliometric Data from Lattes Platform
Get Meteorological Data for Hydrologic Models
Quantifying Systematic Heterogeneity in Meta-Analysis
Parsing Command-Line Arguments and Variable Interpolation
GetR: Calculate Guttman error trees in R
General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
Get Data for Brazilian Bonds (Tesouro Direto)
Learning Optimization and Machine Learning for Statistics
GEV Conditional Density Estimation Network
ARMA-GARCH/APARCH Models with GEV and Stable Distributions
A visual, intuitive, easy to use software giving access to a new
type of information buried into your microarray data
Tools for Working with Hansen et al. Global Forest Change
Dataset
Implements Group Fused Multinomial Regression
Extra Coordinate Systems, 'Geoms', Statistical Transformations,
Scales and Fonts for 'ggplot2'
Categorical Scatter (Violin Point) Plots
Compare Timing of Network Visualizations
Simpler Appearance Modification of 'ggplot2'
Visualization of a Correlation Matrix using 'ggplot2'
Create Dendrograms and Tree Diagrams Using 'ggplot2'
Dynamic Model of Choice with Parallel Computation, and C++
Capabilities
Interactive 'ggplot2' Layer and Theme Aesthetic Editor
Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Visualization Tools for Genealogical Data
Add Marginal Histograms to 'ggplot2', and More 'ggplot2'
Enhancements
Formula Interface to the Grammar of Graphics
Data Visualization Tools for Statistical Analysis Results
Capture the Spirit of Your 'ggplot2' Calls
Create a Half Normal Plot Using 'ggplot2'
Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'
Group Lasso Penalized Learning Using a Unified BMD Algorithm
Tools for Analyzing MCMC Simulations from Bayesian Inference
Gaussian Graphical Models Using Ridge Penalty Followed by
Thresholding and Reestimation
Create Muller Plots of Evolutionary Dynamics
Geometries to Plot Networks with 'ggplot2'
Variations of Parallel Coordinate Plots for Categorical Data
Create Elegant Data Visualisations Using the Grammar of Graphics
Create Ggplots via a Graphical User Interface
Polygons with Holes for the Grammar of Graphics
Annotate Statistical Tests for 'ggplot2'
Quality Control Charts for the Grammar of Graphics Plotting
System
An Implementation of Grammar of Graphics for Graphs and Networks
Allows Interactive Visualization of Data Through a Web Browser
GUI
Repulsive Text and Label Geoms for 'ggplot2'
Scientific Journal and Sci-Fi Themed Color Palettes for
'ggplot2'
'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
A 'ggplot2' Extension for Drawing Publication-Ready Sequence
Logos
North Symbols and Scale Bars for Maps Created with 'ggplot2' or
'ggmap'
Extensions to 'ggplot2' for Radiation Spectra
Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects
An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Extra Themes, Scales and Geoms for 'ggplot2'
A Package on Generalized Hyperbolic Distribution and Its Special
Cases
Gene Set Uncertainty in Enrichment Analysis
Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
Naive Gibbs Sampling with Metropolis Steps
Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information
Random Variate Generator for the GIG Distribution
Gillespie's Stochastic Simulation Algorithm (SSA)
Group Iterative Multiple Model Estimation
Computing the Gini-Based Coefficients for Weighted and Negative
Attributes
Generalized Iterative Proportional Fitting for Relational Models
The giRaph package for graph representation in R
Rstudio Addin for Version Control and Assignment Management
using Git
A Helpful Way to Install R Packages Hosted on GitHub
Quantification of Pinned Microbial Cultures
Constructing panels of population pyramid plots based on lattice
g-and-k and g-and-h Distribution Functions
Gaines and Kuklinski (2011) Estimators for Hybrid Experiments
Penalization in Large Scale Generalized Linear Array Models
Generalized Linear Autoregressive Moving Average Models
Graphical lasso- estimation of Gaussian graphical models
General Linear Ballistic Accumulator Models
Calculate Textures from Grey-Level Co-Occurrence Matrices
(GLCMs)
Estimation and Use of the Generalised (Tukey) Lambda
Distribution
Fitting Single and Mixture of Generalised Lambda Distributions
(RS and FMKL) using Various Methods
Fit GLD Regression Model and GLD Quantile Regression Model to
Empirical Data
Global and Individual Tests for Direct Effects
Learning Interactions via Hierarchical Group-Lasso
Regularization
An Adaptive Test on High Dimensional Parameters in Generalized
Linear Models
All Hierarchical or Graphical Models for Generalized Linear
Model
Bayesian Fractional Polynomials for GLMs
Fitting Generalized Linear Models Subject to Constraints
Distributed 'glm' for Big Data using 'ddR' API
Graph-Constrained Regularization for Sparse Generalized Linear
Models
Fit GLM with LEP-based penalized maximum likelihood
Generalized Linear Mixed Models via Monte Carlo Likelihood
Approximation
Generalised Linear Mixed Models with BUGS and JAGS
Variable Selection for Generalized Linear Mixed Models by
L1-Penalized Estimation
Generalized Linear Models with Clustering
Generalized Linear Mixed Model (GLMM) for Binary Randomized
Response Data
Generalized Linear Mixed Models using Template Model Builder
Lasso and Elastic-Net Regularized Generalized Linear Models
Fit a Penalized Constrained Continuation Ratio Model for
Predicting an Ordinal Response
L1 Regularization Path for Generalized Linear Models and Cox
Proportional Hazards Model
Fit a Penalized Continuation Ratio Model for Predicting an
Ordinal Response
Predicted Values and Discrete Changes for GLM
Model selection and multimodel inference made easy
Variable Selection Deviation Measures and Instability Tests for
High-Dimensional Generalized Linear Models
Testing the additional predictive value of high-dimensional data
Bi-Level Optimization of Metabolic Network Models
Global Gene-Set Analysis for Association Studies
Generate Functions to Get or Set Global Options
Objective functions for benchmarking the performance of global
optimization algorithms
Identify Global Objects in R Expressions
Plot 2D and 3D Views of the Earth, Including Major Coastline
Fitting and Testing Generalized Logistic Distributions
Generalized Logrank Tests for Interval-censored Failure Time
Data
Likelihood Ratio Test for Genome-Wide Association under Genetic
Heterogeneity
Generalized Least Squares with Measurement Error
Genomic Mediation Analysis with Adaptive Confounding Adjustment
Distance and Travel Time Between Two Points from Google Maps
Fast Estimation of Gaussian Mixture Copula Models
Graph Based Multiple Comparison Procedures
Generalized Minimum Distance of distributions
Accessing a Geometallurgical Database with R
Short Term Forecasting via GMDH-Type Neural Network Algorithms
Geometric Median, k-Median Clustering and Robust Median PCA
Mediation Analysis for Multiple and Multi-Stage Mediators
Meta-Analysis via a Unified Framework of Confidence Distribution
Descriptive Statistics, Transition Plots, and More
Generalized Method of Moments and Generalized Empirical
Likelihood
Multinomial Logit Models with Random Parameters
Various R Programming Tools for Model Fitting
'2D plots of linear or integer programming models'
Generalised Management Strategy Evaluation Simulator
Interface Between GMT Map-Making Software and R
Computation of Generalized Nash Equilibria
Generalized Non-negative Matrix Factorization Based on Renyi
Divergence
Read Data from Files Readable by 'gnumeric'
Weighted and lexicographical goal programming and optimization
Functions for Community Data and Ordinations
Model-diagnostics based on cumulative residuals
Fast DocumentTermMatrix and TermDocumentMatrix Creation
Testing Goodness-of-Fit with the Kernel Density Estimator
Khmaladze Martingale Transformation Goodness-of-Fit Test
Goodness of Fit Noise Analysis Using Monte Carlo Techniques
Tests of Fit for some Probability Distributions
Classical Goodness-of-Fit Tests for Univariate Distributions
Generalized Orthogonal GARCH (GO-GARCH) models
Gene Ontology Label Discernment and Identification
Association Analysis for Categorical Variables
Easy Authentication with Google OAuth2 API
Collect Data Programmatically by POST Methods to Google Forms
Working with Google Public Data Explorer DSPL Metadata Files
Accesses Google Maps APIs to Retrieve Data and Plot Maps
Visualization of Functional Analysis Data
Fit Generalized Odds Rate Mixture Cure Model with Interval
Censored Data
Generalized Order-Restricted Information Criterion for Selecting
Order-Restricted (Multivariate) Linear Models
functions to get public survey data in Japan
Gaussian Processes for Pareto Front Estimation and Optimization
Batch Effect Detection via Guided Principal Components Analysis
GPCSIV, Generalized Principal Component of Symbolic Interval
variables
General Profiling Method for Delay Differential Equation
Bootstrap goodness-of-fit test for the generalized Pareto
distribution
Apply Gaussian Process in Functional data analysis
Solving Complex Game Problems using Gaussian Processes
Generalized Partial Linear Models (GPLM)
Various R Programming Tools for Plotting Data
Generalized Partially Linear Tree-Based Regression Model
Analysing and plotting genotype-phenotype maps
A Minimalistic package to apply Gaussian Process in R
Gaussian Process Ranking of Multiple Time Series
gpseq: Using the generalized Poisson distribution to model
sequence read counts from high throughput sequencing
experiments
Maximum Likelihood Estimation of Multiple Membership Mixed
Models Used in Value-Added Modeling
Prediction of G Quadruplexes and Other Non-B DNA Motifs
Graph-Constrained Estimation and Hypothesis Tests
Interactive Color Gradient Picker Using 'htmlwidgets' and the
Modified JS Script 'jquery-gradient-picker'
Species distribution modelling using latent Gaussian random
fields
Graphical Representation and Modeling of Metagenomic Reads
Creating Continuously Integrated Package Repositories from
Manifests
Graphical Analysis of Variance Using ggplot2
Gene-Ranking Analysis of Pathway Expression
Efficient selection of undirected graphical models for
high-dimensional datasets
A Multi-Platform GUI for Drawing Customizable Graphs in R
Network Topology of Intravariable Clusters with Intervariable
Links
Graphical VAR for Experience Sampling Data
Estimating Structural Invariants of Graphical Models
A Collection of Graphon Estimation Methods
Cluster Detection with Hypothesis Free Scan Statistic
Perform Common Quantitative Tasks for Australian Analysts and to
Support Grattan Institute Analysis
A Compilation of Different Estimation Methods for Gravity Models
Inference in Graphical Gaussian Models with Edge and Vertex
Symmetries
Parameter Inference and Optimal Designs for Grouped and/or
Right-Censored Count Data
GRadient-Based RECognition of Spatial Patterns in Environmental
Data
Simple and Scalable Statistical Modelling in R
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
Fit a Grey-Zone Model with Survival Data
Miscellaneous Functions for "Grid" Graphics
Redraw Base Graphics Using 'grid' Graphics
Tools for Grid-Based Survey Sampling Design
A Simulation Tool to Determine the Required Sample Size for
Repertory Grid Studies
Uses Grieg-Smith method on 2 dimentional spatial data
Generalized Regression on Orthogonal Components
The package was developed to fit fit many growth curves obtained
under different conditions
Gromov-Hausdorff Type Distances for Labeled Metric Spaces
Regression Analysis of Grouped and Coarse Data
Regularized Multivariate Regression for Identifying Master
Predictors Using the GroupRemMap Penalty
A GUI-Based Program to Compute Probabilities Regarding Group
Sequential Designs
Multiple Testing Procedure for Grouped Hypotheses
Wavelet Functional ANOVA Through Markov Groves
Bayesian Semi and Nonparametric Growth Curve Models that
Additionally Include Multiple Membership Random Effects
Bayesian Non-Parametric Dependent Models for Time-Indexed
Functional Data
Multivariate Normal and Elliptically-Contoured Repeated
Measurements Models
Simple Metrics to Summarize Growth Curves
Bayesian reconstruction of growth velocity
Estimate Growth Rates from Experimental Data
Fitting user specified models with Group Lasso penalty
Concave 1-norm and 2-norm group penalty in linear and logistic
regression
Regularization Paths for Regression Models with Grouped
Covariates
Penalized Regression Models with Overlapping Grouped Covariates
Patterns and Statistical Differences Between Two Groups of
Strings
Alternative Implementations of Base R Functions
GRS Test for Portfolio Efficiency and Its Statistical Power
Analysis
Tools for the Analysis of Gutenberg-Richter Distributions of
Earthquake Magnitudes
Gene Set Analysis using the Gamma Method
Two functions for Generalized SARIMA time series simulation
Robust Estimation in the Presence of Cellwise and Casewise
Contamination and Missing Data
Semi-Supervised Generalized Structural Equation Modeling
Group Sequential Design in Equivalence Studies
Download Google Sheets Using Just the URL
Global Sea Level and Oxygen Isotope Data
Genome Structure Rearrangement Calling in Genomes with High
Synteny
Group Sequential Refined Secondary Boundary
Copula Density and 2-D Hazard Estimation using Smoothing Splines
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Utilities for strings and function arguments
Estimation of the Generalized Symmetry Point, an Optimal
Cutpoint in Continuous Diagnostic Tests
Generalizability Theory for Information Retrieval Evaluation
Calculate efficiencies of group testing algorithms with
correlated responses
Game-Theoretically OPtimal (GTOP) Reconciliation Method
Perform and Display Google Trends Queries
Maps, data and methods related to Guerry (1833) "Moral
Statistics of France"
Adjust Estimates of Learning for Guessing
Graphical User Interface for Generalized Multistate Simulation
Model
Implementation of Sampling Formulas for the Unified Neutral
Model of Biodiversity and Biogeography, with or without Guild
Structure
Statistical Analysis of Monthly Background Checks of Gun
Purchases
Download and Process Public Domain Works from Project Gutenberg
Fast Calculation of the Likelihood of a Stochastic Survival
Model
Regularized Categorical Effects/Categorical Effect
Modifiers/Continuous/Smooth Effects in GLMs
Global Validation of Linear Models Assumptions
Genome-Wide Association/Interaction Analysis and Rare Variant
Analysis with Family Data
Exact Hardy-Weinburg testing for Genome Wide Association Studies
A Shiny App to Aid Interpretation of Geometrically-Weighted
Degree Estimates in Exponential Random Graph Models
Controlling the genome-wide type I error rate in association
mapping experiments
Calculation of probabilities for inadequate and excessive
gestational weight gain
gWidgets API for building toolkit-independent, interactive GUIs
Rewrite of gWidgets API for Simplified GUI Construction
Implementation of gWidgets2 for the RGtk2 Package
Toolkit Implementation of gWidgets2 for tcltk
Toolkit Implementation of gWidgets for RGtk2
Toolkit implementation of gWidgets for tcltk package
Geographically Weighted Logistic Elastic Net Regression
Generalized Weighted Quantile Sum Regression
Generalized Waring Regression Model for Count Data
Fits geographically weighted regression models with diagnostic
tools
Estimating Genome-Wide Significance for Whole Genome Sequencing
Studies, Either Single SNP Tests or Region-Based Tests
Maximum Likelihood Estimation for Gene-by-Measured Environment
Interaction Models
Software to perform Haar Fisz transforms
Estimation, Simulation and Visualization of Hierarchical
Archimedean Copulae (HAC)
Utilities for using R scripts in Hadoop streaming
Hierarchical Optimal Matching and Machine Learning Toolbox
Univariate non-parametric two-sample test based on empirical
Hankel transforms
Provides Easy Downloading Capabilities for the UK Parliament API
Inference of Trait Associations with SNP Haplotypes and Other
Attributes using the EM Algorithm
Analyzing Case-Parent Triad and/or Case-Control Data with SNP
Haplotypes
Estimate Haplotype Relative Risks in Case-Control Data
Reconstruction of Haplotype-Blocks from Time Series Data
Statistical Analysis of Haplotypes with Traits and Covariates
when Linkage Phase is Ambiguous
Tool for Clustering Genotypes in Haplotypes
Haplotype Inference and Statistical Analysis of Genetic
Variation
Calculate Upcoming Birthday Dates of Github Repos
Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Harmonic Mean p-Values and Model Averaging by Mean Maximum
Likelihood
Harmonic Regression to One or more Time Series
Wrangle Phylogenetic Distance Matrices and Other Utilities
Full feature implementation of hash/associated
arrays/dictionaries
A collection of non-cryptographic hash functions
Generate Short Unique YouTube-Like IDs (Hashes) from Integers
Import and Export 'SPSS', 'Stata' and 'SAS' Files
Hawkes process simulation and calibration toolkit
Damage functions from FEMA's HAZUS software for use in modeling
financial losses from natural disasters
Hierarchical Bayesian Modeling of Decision-Making Tasks
Hierarchical Bayesian Design for Clinical Trials
Hierarchical Bayesian Regression for GLMs
Hill/Bliss Independence Model for Combination Vaccines
Hierarchical Bayesian Analysis of Recognition Memory
Hierarchical Bayesian Small Area Estimation
Hierarchical Bayesian Space-Time models for Gaussian space-time
data
Interval estimation for the parameters of linear models with
heteroskedasticity (Wild Bootstrap)
Change Point Estimation for Regression with Heteroscedastic Data
High Dimensional Confidence Interval Based on Lasso and
Bootstrap
High Dimensional Supervised Classification and Clustering
Sample Size Calculation for High Dimensional Classification
Study
Use Known Groups in High-Dimensional Data to Derive Scores for
Plots
Hierarchical DECOmposition of Entropy for Categorical Map
Comparisons
Tests for High Dimensional Generalized Linear Models
Statistical Analysis Tools for High Dimension Molecular Data
(HDMD)
Benchmarking and Visualization Toolkit for Penalized Cox Models
Leland Wilkinson's Algorithm for Detecting Multidimensional
Outliers
Principal Component Analysis in High-Dimensional Data
Highest density regions and conditional density estimation
High Dimensional Hypothesis Testing for Mean Vectors, Covariance
Matrices, and White Noise of Vector Time Series
The Lasso for the Tweedie's Compound Poisson Model Using an
IRLS-BMD Algorithm
Health Effects of Air Pollution and Temperature (HEAT)
Heat exchange calculations during physical activity
Fit Statistic for Binary Dependent Variable Models
Interactive Cluster Heat Maps Using 'plotly'
Robust Estimation Using Heavy-Tailed Distributions
Markov Models for Health Economic Evaluations
Calculate Healthy Eating Index (HEI) Scores
Decode and Validate HEIMS Data from Department of Education,
Australia
Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()'
and 'as.data.frame()'
Hierarchical Ensemble Methods for Directed Acyclic Graphs
Visualizing Hypothesis Tests in Multivariate Linear Models
Hierarchical Exponential-Family Random Graph Models
Marker-Based Estimation of Heritability Using Individual Plant
or Plot Data
Heritability of Gene Expression for Next-Generation Sequencing
Heuristics Including Take the Best and Unit-Weight Linear
Holonomic Gradient Method and Gradient Descent
Handy Functions for Working with HGNC Gene Symbols and
Affymetrix Probeset Identifiers
Statistical Analysis and Data Display: Heiberger and Holland
Heller-Heller-Gorfine Tests of Independence and Equality of
Distributions
Age-Structured Spatio-Temporal Models for Infectious Disease
Counts
The Hilbert-Huang Transform: Tools and Methods
Simulation from distributions supported by nested hyperplanes
Bindings for the 'HaveIBeenPwned.com' Data Breach API
Systematic Analysis of Architectural Proteins and Functional
Elements in Blocking Long-Range Contacts Between Loci
Multiple Logistic Regression for 3D Chromatin Domain Border
Analysis
Probing Factor-Dependent Long-Range Contacts using Regression
with Higher-Order Interaction Terms
The All-Configurations, Maximum-Interaction F-Test for Hidden
Additivity
Inference on High Dimensional Max-Stable Distributions
Functions For Performing Hierarchical Analysis of Distance
Sampling Data
Set Data Visualization Using Hierarchies
Hierarchical Multiplicative Partitioning of Complex Phenotypes
Analysis of Dynamics Hierarchy Formation
Estimation and Tests of Hierarchical F-Statistics
A graphical user interface for calculating power and sample size
for hierarchical data
Convex Hierarchical Testing of Interactions
Two-Sample Tests for Equality of Means in High Dimension
Outlier Detection Algorithms for High-Dimensional Data
Two-Sample Tests for High-Dimensional Mean Vectors
Determining and Evaluating High-Risk Zones
High Throughput Screening for Plate Based Essays
Simultaneous Critical Values for t-Tests in Very High Dimensions
Estimation of Heritability in Linear Mixed Models
H-Index Calculator using Data from a Web of Science (WoS)
Citation Report
Tools for hypothesis testing based on Hypergeometric
Intersection distributions
Hierarchical Item Response Theory Models
Hierarchical Semiparametric Regression of Test Statistics
Data Sets from the History of Statistics and Data Visualization
Construction of Regular and Irregular Histograms with Different
Options for Automatic Choice of Bins
"Hit and Run" and "Shake and Bake" for Sampling Uniformly from
Convex Shapes
HIV calibrated model life tables for countries with generalized
HIV epidemics
Conversion Tools for HK80 Geographical Coordinate System
Ensemble Clustering using K Means and Hierarchical Clustering
Spatial Extreme Value Analysis with the Hierarchical Model of
Reich and Shaby (2012)
API to Retrieve Data from Hong Kong Stock Exchange
Diagnostic Tools for Hierarchical (Multilevel) Linear Models
The H-measure and other scalar classification performance
metrics
Hidden Markov Model for Continuous Observations Processes
Hidden Markov Models with Discrete Non-Parametric Observation
Distributions
Analysing accelerometer data using hidden Markov models
Hypothesis Testing and Power Calculations for Comparing
Metagenomic Samples from HMP
Statistical Object Oriented Data Analysis of RDP-Based Taxonomic
Trees from Human Microbiome Data
Flux Estimation with Static Chamber Data
Group Association Test using a Hidden Markov Model
Half-Normal Plots with Simulation Envelopes
Collect and Retrieve Annotation Data for Various Genomic Data
Using Different Webservices
Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
Methods for Closed Testing with Simes Inequality, in Particular
Hommel's Method
Theoretical Model to Simulate Radical Polymerization
Homogeneity tests for Regional Frequency Analysis
Transmissions and Receptions in a Hop by Hop Network
Supplemental Functions and Datasets for "Handbook of Regression
Methods"
Horn's (1965) Test to Determine the Number of Components/Factors
Flexible Non-Linear Regression with the HorseRule Algorithm
Hot Deck Imputation Methods for Missing Data
A lower bound for the number of correct rejections
Heligman Pollard mortality model parameter estimation using
Bayesian Melding with Incremental Mixture Importance Sampling
High Performance Cluster Models Based on Kiefer-Wolfowitz
Recursion
Miscellaneous convenience functions and dataset
Regularization Paths for Lasso or Elastic-Net Penalized Huber
Loss Regression and Quantile Regression
Additional Themes, Theme Components and Utilities for 'ggplot2'
Hierarchical Spatial Autoregressive Model (HSAR)
A Handbook of Statistical Analyses Using R (1st Edition)
A Handbook of Statistical Analyses Using R (2nd Edition)
A Handbook of Statistical Analyses Using R (3rd Edition)
hierarchical Bayesian species distribution models
Canonical Correlation Analysis based on Kernel Independence
Measures
A Path-Based BCD for Proximal Function of Latent Group Lasso
Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data
Meta-Analysis of Diagnostic Test Accuracy when Reference Test is
Imperfect
Tidy Up and Test XPath Queries on HTML and XML Content
Facilitates Automated HTML Report Creation
Historical Tree Ensembles for Longitudinal Data
Clustering High-Throughput Transcriptome Sequencing (HTS) Data
High Throughput Sequencing of Stable Isotope Probing Data
Analysis
compute HUM value and visualize ROC curves
Simplify Analysis and Annotation of Human Microarray Datasets
An R Package for Calculating Water Vapor Measures from
Temperature and Relative Humidity
High-Performance Stemmer, Tokenizer, and Spell Checker for R
Zero-Inflated and Hurdle Modelling Using Bayesian Inference
Explore and Map County-Level Hurricane Exposure in the United
States
Models and Tests for Departure from Hardy-Weinberg Equilibrium
and Independence Between Loci
Bayesian investigation of Hardy-Weinberg Equilibrium via
estimation and testing
Objective Bayesian Testing for the Hardy-Weinberg Equilibrium
Problem
Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
HTML Writer - Outputs R objects in HTML format
Exact Tests for Hardy-Weinberg Proportions
Build, Deploy and Evaluate Hybrid Ensembles
Implementation of the Hybrid Monte Carlo and Multipoint Hybrid
Monte Carlo sampling techniques
Stochastic Hybrid Models in Dynamic Networks
Hybrid Bayesian Networks Using R and JAGS
Tools and models for hydrological applications
Groundwater Data Presentation and Interpretation
Goodness-of-Fit Functions for Comparison of Simulated and
Observed Hydrological Time Series
R codes for estimating water retention and infiltration model
parameters using experimental data
Particle Swarm Optimisation, with focus on Environmental Models
Hydrologic Indices for Daily Time Series Data
Time Series Management, Analysis and Interpolation for
Hydrological Modelling
Generic N-Dimensional Hyperplane Fitting with Heteroscedastic
Covariant Errors and Intrinsic Scatter
Attribute Sampling Plan with Exact Hypergeometric Probabilities
using Chebyshev Polynomials
Hyper-Ensemble Smote Undersampled Random Forests
Work with Hyperspectral Data, i.e. Spectra + Meta Information
(Spatial, Time, Concentration, ...)
High Dimensional Geometry and Set Operations Using Kernel
Density Estimation, Support Vector Machines, and Convex Hulls
Tools to Hyphenate Strings Using the 'Hunspell' Hyphenation
Library
Macroevolutionary phylogentic analysis of species trees and gene
trees
Confidence Intervals and Tests of Statistical Hypotheses
Wrapper for the 'Hypothes.is' Web Annotation Service
Hybrid Methods for Addressing Uncertainty in RISK Assessments
Tools for Modeling Rate-Dependent Hysteretic Processes and
Ellipses
Plotting N-T Plane for Decision on Performing an Interim
Analysis
Analysis of Intra Annual Density Fluctuations
Synthesizing Information Across Collaborating Research
Thermophysical Properties of Water and Steam
Model Selection for Index of Asymmetry Distribution
Cleaning and Visualizing Implicit Association Test (IAT) Data
Scoring Algorithm for the Implicit Association Test (IAT)
Implicit Association Test Scores Using Robust Statistics
Integrative Bayesian Analysis of Transcriptomic and CGH Data
Functions for the Analysis of IBD Haplo Output
Convert Between Different IBD-State Labelling Schemes
Regression Methods for IBD Linkage With Covariates
Simulation of Chromosomal Regions Shared by Family Members
Irregular-lattice based ensemble empirical mode decomposition
Toolkits to Develop Individual-Based Models in Infectious
Disease
Iboot: iterated bootstrap tests and confidence sets
R API to Interactive Brokers Trader Workstation
An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
A Copy Number and Expression-Based Classifier for Breast Tumours
Inequality and Concentration Indices and Curves
Standardized high-throughput evaluation of cell-based compound
screens
Independent Components Analysis (ICA) based artifact correction
Imperialist Competitive Algorithm for Optimal Designs
Calibrates and Reweights Units in Samples
Bayesian Semiparametric Models for Interval-Censored Data
Facilitating Estimation of the Intraclass Correlation
Coefficient
Multilevel Model Intraclass Correlation for Slope Heterogeneity
Facilitates Clustered Binary Data Generation, and Estimation of
Intracluster Correlation Coefficient (ICC) for Binary Data
Calculation of Sample Size and Power for ICC
Tools for Working with ICD-9 and ICD-10 Codes, and Finding
Comorbidities
Tools for Working with ICD-9 Codes, and Finding Comorbidities
EM by the Method of Weights for Incomplete Categorical Data in
Generlized Linear Models
Individual Conditional Expectation Plot Toolbox
Apply Statistical Post-Processing to Improve Sea Ice Predictions
Incremental Cost-Effectiveness (ICE) Statistical Inference from
Two Unbiased Samples
Regression Models for Interval Censored Data
Study Design and Data Analysis in the Presence of Error-Prone
Diagnostic Tests and Self-Reported Outcomes
Stock Assessment Graphs Database Web Services
Functions to Support the ICES Transparent Assessment Framework
Estimation of number of clusters and identification of atypical
units
Fit Generalized Odds Rate Hazards Model with Interval Censored
Data
Inequality constrained inference in linear normal situations
A Button-Based GUI for Financial and Economic Data Analysis
Integrative clustering of multiple genomic data types
Empirical Bayes Variable Selection via ICM/M Algorithm
Global Triangular and Penta-Hexagonal Grids Based on Tessellated
Icosahedra
Reproducible Data Retrieval from the ICPSR Archive
Simultaneous Confidence Intervals for Ranks
A Modified Random Survival Forest Algorithm
Tools for Exploring Multivariate Data via ICS/ICA
Outlier Detection Using Invariant Coordinate Selection
A package for semiparametric regression analysis of
interval-censored data
Estimating and Testing the Number of Interesting Components in
Linear Dimension Reduction
Indirect Cross-Validation (ICV) for Kernel Density Estimation
R Interface to the US Census Bureau International Data Base API
Update Chinese ID Card Number to Eighteen Digits
Efficient Designs for Discrete Choice Experiments
Inference in Randomized Controlled Trials with Death and
Missingness
Jacquard Condensed Coefficients of Identity
Various Methods for Estimating Intrinsic Dimension
Integrative Differential Network Analysis in Genomics
Regression Model for Progressive Illness Death Data
Integrated Discovery of Oncogenic Signatures
Utilities of Institute of Data Analyses and Process Design
(www.idp.zhaw.ch)
Imprecise Dirichlet Process for Survival Analysis
Estimate Global Clustering in Infectious Disease
Identify Turtles by their Plastral Biometries
R Analysis package for iDynoMiCS Simulation Results
Irucka Embry's Miscellaneous USGS Functions
Integrating External Controls into Association Test
Functions to set and get the IEEE rounding mode
Irucka Embry's Miscellaneous Data Collection
Irucka Embry's Miscellaneous Text Collection
An integrative factor analysis model for drug-pathway
association inference
Toolkit for Item Factor Analysis with 'OpenMx'
Italian Fiscal Code ('Codice Fiscale') Utilities
Statistical Tests and Utilities for Genetic Association
Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic'
Data)
A Collection of Network Data Sets for the 'igraph' Package
Convert iGraph graps to SoNIA .son files
Integrative Gene Set Enrichment Analysis Approaches
Instagram 2014 Vancouver Top Colour Dataset
Consistency, Homogeneity and Summary Statistics of
Climatological Data
Improved Laplace Approximation for Integrals of Unimodal
Functions
Lee-Carter Mortality Models using Iterative Fitting Algorithms
Aids in Processing and Plotting Data from a Lemna-Tec
Scananalyzer
Image Processing Library Based on 'CImg'
Simulate General Insurance Policies and Losses
IMAGing engINE, Tools for Application of Image Filters to Data
Matrices
Delimit and Characterize Color Phenotype of the Pearl Oyster
Likelihood Methods for Mediation Analysis
R Interface for International Monetary Fund(IMF) Data API
Download Data from the International Monetary Fund's Data API
Fitting, Diagnostics, and Plotting Functions for Infinite
Mixtures of Infinite Factor Analysers and Related Models
Item Response Models for Multiple Ratings
Identifying Causal Effect for Multi-Component Intervention Using
Instrumental Variable Method
Imprecise Inference for Poisson Sampling Models
Minimum distance estimation in an imprecise probability model
A collection of methods for left-censored missing data
imputation
The Multifactor Dimensionality Reduction (MDR) Analysis for
Incomplete Data
Impute Missing Values in a Predictive Context
Imputation Methods for Multivariate Multinomial Data
Impute Missing Data in Time Series Data with PSF Based Method
Robust Multiple Imputation with Generalized Additive Models for
Location Scale and Shape
Test Bench for the Comparison of Imputation Methods
Imputing the Last Largest Censored Observation(s) Under Weighted
Least Squares
Information Matrix Test for Generalized Partial Credit Models
Mixture models for longitudinal count data
Analysing Inbreeding Based on Genetic Markers
Recognize and Handle Data in Formats Used by Swedish Cancer
Centers
Incremental Calculation of Dynamic Time Warping
Compute, Handle, Plot and Model Incidence of Dated Events
Dose Response Curves from Incucyte Proliferation Assays
Insertion Deletion Analysis While Accounting for Possible
Missing Data
Nonparametric tests of independence between random vectors
Relationship Between Species and Groups of Sites
Tests of Independence Between Point Processes in Time
Integrate INEGI’s (Mexican Stats Office) API with R
Measuring Inequality, Concentration, and Poverty
Interpolation and Extrapolation for Species Diversity
Interpolation and Extrapolation for Phylogenetic Diversity
Infine-dimensional model (IDM) to analyse phenotypic variation
in growth trajectories
Functions to extract inferential values of a fitted model object
Inference about the standardized mortality ratio when evaluating
the effect of a screening program on survival
Methods for Causal Inference with Interference
Estimate and Account for Tumor Purity in Cancer Methylation Data
Analysis
Tools for Detecting Influential Data in Mixed Effects Models
Software Tools to Quantify Structural Importance of Nodes in a
Network
Case Influence in Structural Equation Models
Information Decomposition of Two-Phase Experiments
Data Exploration with Information Theory (Weight-of-Evidence and
Information Value)
Performance Analysis and Companion Functions for Binary
Classification Models
Multiple Imputation for Informative Censoring
Sequence Statistics for Relational Event Models
Calculates the Probability of Informed Trading (PIN)
Functions to Inline C, C++, Fortran Function Calls from R
Convert inline comments to documentation
Miscellaneous Functions for the USGS INL Project Office
Integrative Network Omnibus Total Effect Test
Analyse Text Documents Using Ecological Tools
insideRODE includes buildin functions with deSolve solver and
C/FORTRAN interfaces to nlme, together with compiled codes
Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
High-Dimensional Changepoint Estimation via Sparse Projection
Inferring Shared Modules from Multiple Gene Expression Datasets
with Partially Overlapping Gene Sets
Check, Install and Load CRAN & USGS GRAN Packages
Using R to Install Stuff (Such As: R, 'Rtools', 'RStudio',
'Git', and More!)
A Collection of Insurance Datasets Useful in Risk Classification
in Non-life Insurance
procedures for automated interpolation - methods only to be used
interactively, not included in intamap package
Semiparametric Competing Risks Regression under Interval
Censoring
Integrating Multiple Modalities of High Throughput Assays Using
Item Response Theory
Joint Modeling of the Gene-Expression and Bioassay Data, Taking
Care of the Effect Due to a Fingerprint Feature
Integrated Prediction using Uni-Variate and Multivariate Random
Forests
Tests for marginal interactions in a 2 class response model
Calculates Critical Test Statistics to Control False Discovery
and Familywise Error Rates in Marginal Effects Plots
interactive network analysis and visualization
Compute Chi-Square Measures with Corrections
Cure Rate Estimators for Interval Censored Data
GUI to Analyse qPCR Results after PMA Treatment or not
Exact Confidence Intervals in the Presence of Interference
Multiplicative Interaction Models Diagnostics and Visualization
Interference Color Charts for Polarized Light Microscopy
Coercion Routines for Network Data Objects
Scheduling Interim Analyses in Clinical Trials
Plot the Effects of Variables in Interaction Terms
Hourly interpolation of multiple temperature daily series
Interpreting High Resolution Mass Spectra
Binary Classifier and Regression Model Interpretation Functions
Simulation of Inter-Related Genomic Datasets
Weighted Logrank Tests and NPMLE for interval censored data
Tools for Working with Points and Intervals
Interventional Inference for Dynamic Bayesian Networks
Numerical Integration for Integrated Likelihood
Integrative Clustering of Multiple Genomic Dataset
linear programming solver by the interior point method and
graphically (two dimensions)
methods for analyzing introgression between divergent lineages
Analysis of Time-Ordered Event Data with Missed Observations
Interface to Popular R Functions for Data Science Pipelines
Interval and Enum-Type Representation of Vectors
Threshold regression that fits the (randomized drift) inverse
Gaussian distribution to survival data
A Unified Framework for Input-Output Operations in R
Calling Copy Number Alterations in Amplicon Sequencing Data
Calculate the Number of Required Flows for Semiconductor
Sequencing
Functions for Smoothing with Infinite Order Flat-Top Kernels
Tools for subgroup analyses with multiple trial data using
aggregate statistics
Spatial Interpolation by Inverse Path Distance Weighting
Fast Implementation of the Iterative Proportional Fitting
Procedure in C
Builds and analyses Integral Projection Models (IPMs)
Intervention in Prediction Measure (IPM) for Random Forests
Interfaces to Phylogenetic Software in R
Introduction to Probability and Statistics Using R
Convert IP Addresses to Country Names or Full Location with
Geoplotting
Manipulate, Validate and Resolve 'IP' Addresses
Propensity Score Based Adjusted Survival Curves and
Corresponding Log-Rank Statistic
Iterated Racing for Automatic Algorithm Configuration
Integrative Random Forest for Gene Regulatory Network Inference
A R Interface for the Instantaneous RATEs (IRATE) Model
Correlation Coefficients for Information Retrieval
Regression Methods for Interval-Valued Variables
Irish Companies' Boards from 2003 to 2013
Classes and Methods for Seismic Data Analysis
Fast Truncated Singular Value Decomposition and Principal
Components Analysis for Large Dense and Sparse Matrices
Various Coefficients of Interrater Reliability and Agreement
A Collection of Functions Related to Item Response Theory (IRT)
Estimating IRT Parameters using the IRT Methodology
Utilities and Probability Distributions Related to
Multidimensional Person Item Response Models
Estimation of Tree-Based Item Response Models
Iterative Selection of Blocks of Features - ISBF
Provides datasets for Introduction to Statistical Data Analysis
for the Life Sciences
Parse 'NOAA' Integrated Surface Data Files
Fitting Ising Models Using the ELasso Method
Sampling Methods and Distribution Functions for the Ising Model
Stochastic Island Biogeography Theory Made Easy
Data for an Introduction to Statistical Learning with
Applications in R
An Introduction to Statistical Modeling of Extreme Values
Functions to Perform Isotonic Regression
Confidence intervals for current status data based on
transformations and bootstrap
Order-Restricted Inference for Microarray Experiments
Calculation of isotopic pattern for a given molecular formula
Statistical Toolbox for Radiometric Geochronology
Isoscape Computation and Inference of Spatial Origins using
Mixed Models
Active Set and Generalized PAVA for Isotone Optimization
Penalized Isotonic Regression in one and two dimensions
Week of the year and weekday according to ISO 8601
The Italian Survey on Household and Wealth, 2008 and 2010
Approximate Probability Densities by Iterated Laplace
Approximations
Efficient Iterators for Permutations and Combinations
itertools2: Functions creating iterators for efficient looping
Tools for classification and regression trees, with an emphasis
on interpretability
Interpreting Time Series and Autocorrelated Data Using GAMMs
Time series analysis package for students
To Access iTunes App Store Ratings and Reviews using R
Incorporating Uncertainties in Propensity Scores
Bayesian Instrumental Variable Estimation and Model
Determination via Conditional Bayes Factors
Instrumental fixed effect panel data model
Uses heteroscedasticity to estimate mismeasured and endogenous
regressor models
Statistical Inference and Sensitivity Analysis for Instrumental
Variables Model
Create Independent Evidence in IV Analyses and Do Sensitivity
Analysis in Regression and IV Analysis
Improved methods for causal inference and missing data problems
Simulation-Based Maximum Likelihood Parameter Estimation
Jackknife Estimates of Kaplan-Meier Estimators or Integrals
Statistical Inference of Variables Driving Systematic Variation
Jaccard Index for Population Structure Identification
Blind Source Separation Methods Based on Joint Diagonalization
and Some BSS Performance Criteria
A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
Joint Analysis of Genotype and Group-Specific Variability Using
a Novel Score Test Approach to Map Expression Quantitative
Trait Loci (eQTL)
Analysis Tools for the 'JAMES' Framework
Simple Tools for Examining and Cleaning Dirty Data
Directory of Open Access Journals Client
R modules for JASPAR databases: a collection of transcription
factor DNA-binding preferences, modeled as matrices
Misc Small Tools and Helper Functions for Other Code of J.
Buttlar
Colors Palettes for R and 'ggplot2', Additional Themes for
'ggplot2'
Monte Carlo Option Pricing Algorithm for Jump Diffusion Model
with Correlation Companies
One-to-One Gene-Probeset Mapping for Affymetrix Human
Microarrays
Joint Generalized Estimating Equation Solver
Performs the Joint Graphical Lasso for sparse inverse covariance
estimation on multiple classes
Chinese Text Segmentation Data for jiebaR Package
Joint Modeling of Longitudinal and Survival Data
Joint Modeling of Longitudinal and Time-to-Event Data under a
Bayesian Approach
Joint Mean-Covariance Models using 'Armadillo' and S4
Joint Modeling of Longitudinal and Survival Data - Power
Calculation
Time Series Analysis Toolkit Based on Symbolic Aggregate
Dicretization, i.e. SAX
Permutation Tests for Nonparametric Statistics
Joint Modelling of Repeated Measurements and Time-to-Event Data
Joint Modelling of Multivariate Longitudinal Data and
Time-to-Event Outcomes
Penalized Likelihood Estimation and Dynamic Prediction under the
Joint Frailty-Copula Models Between Tumour Progression and
Death for Meta-Analysis
Joint Approximate Diagonalization of a Set of Square Matrices
Semiparametric Joint Models for Longitudinal and Counting
Processes
Joint N-Mixture Models for Site-Associated Species
Risk estimation using the joint probability method
Joint Modelling of Mixed Correlated Binary and Continuous
Responses : A Latent Variable Approach
Perform Joins or Minus Queries on 'Excel' Files
Multilevel Joint Modelling Multiple Imputation
Functions for some Unit-Level Small Area Estimators and their
Variances
Javascript Object Signing and Encryption
Implements Under/Oversampling for Probability Estimation
Covariance and Inverse Covariance Matrix Estimation Using Joint
Penalty
Create Japanese Administration Area and Office Maps
Methods for population-based cancer survival analysis
Joint Random Forest (JRF) for the Simultaneous Estimation of
Multiple Related Networks
Jack-Knife Support for Evolutionary Distinctiveness Indices I
and W
Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes
Semiparametric Joint Modeling of Survival and Longitudinal Data
A Robust, High Performance JSON Parser and Generator for R
Analysis and Presentation of Social Scientific Data
Seamless Integration Between R and 'Julia'
Access Open Data Through the 'Junar' API
Construct Complex Table with 'kable' and Pipe Syntax
Kernel Approaches for Nonlinear Genetic Association Regression
Package to identify and sort genes overexpressed
Kantorovich Distance Between Probability Measures
Test the Homogeneity of Kappa Statistics
Non-Additive Measure and Integral Manipulation Functions
Sample Size Estimation Functions for Studies of Interobserver
Agreement
Calculates "vectorial Kappa", an index of congruence between
patchy mosaics
K-Adaptive Partitioning for Survival data
Kinetic analysis and visualization of DCE-MRI data
Kernel Smoothing for Bivariate Copula Densities
Nonparametric method for identifying discordant phylogenetic
trees
Multivariate Kernel Density Estimation with Vine Copulas
Kernel Estimator and Bandwidth Selection for Density and Its
Derivatives
Arrays with Better Control over Dimension Dropping
Collect, Assemble and Model Air Pollution, Weather and Health
Data
Calculate Solutions to the Kelvin Differential Equation using
Bessel Functions
Kendall rank correlation and Mann-Kendall trend test
Kernel-Smoothed Nonparametric Methods for Environmental Exposure
Data Subject to Detection Limits
R Interface to the Keras Deep Learning Library
Nonparametric kernel estimation of the distribution function.
Bandwidth selection and estimation of related functions
Expectile Regression in Reproducing Kernel Hilbert Space
Distance Weighted Discrimination (DWD) and Kernel Methods
Smoothed Bootstrap and Random Generation from Kernel Densities
Kernel Factory: An Ensemble of Kernel Machines
Kernel Density Estimation for Heaped and Rounded Data
A Kernel Regression-Based Multidimensional Wind Turbine Power
Curve
Kernel Machine Score Test for Semi-Competing Risks
Functions for Kernel Smoothing Supporting Wand & Jones (1995)
Access the System Credential Store from R
Decrypt Passwords from Gnome Keyring, Windows Data Protection
API and macOS Keychain
Kalman Filter and Smoother for Exponential Family State Space
Models
Integrated Code Chunk Anchoring and Referencing for R Markdown
Documents
Kalman Filter, Smoother and Disturbance Smoother
Framework for the Analysis of Kinetic Visual Field Data
Routines for Fitting Kinetic Models to Chemical Degradation Data
Example Data from the Multi-Modal MRI Reproducibility Resource
Example Functional Imaging Data from the Multi-Modal MRI
Reproducibility Resource
Example T1 Structural Data from the Multi-Modal MRI
Reproducibility Resource
a Keep It Simple Species Migration Model
Spectral response of water wells to harmonic strain and pressure
Linear equations with Kronecker structure
Kaplan-Meier Estimator with Constraints for Right Censored Data
-- a Recursive Computational Algorithm
Confidence intervals for the Kaplan-Meier estimator
Kaplan-Meier Simultaneous Confidence Band for the Survivor
Function
'Yinyang' K-Means and K-NN using NVIDIA CUDA
Distributed k-Means for Big Data using 'ddR' API
Kaplan-Meier Multiple Imputation for the Analysis of Cumulative
Incidence Functions in the Competing Risks Setting
Clustering longitudinal data using the likelihood as a metric of
distance
K-Means for Longitudinal Data using Shape-Respecting Distance
K-Means with Simultaneous Outlier Detection
Data sets from Klein and Moeschberger (1997), Survival Analysis
Generate Feasible Samples of a Knapsack Problem
A General-Purpose Package for Dynamic Report Generation in R
Nearest-neighbor Classification with Categorical Variables
Knockoff Filter for Controlling the False Discovery Rate
Non-Uniform Memory Access ('NUMA') Optimized, Parallel K-Means
Discriminating Well Surveyed Spatial Units from Exhaustive
Biodiversity Databases
Tools for the provision of scientific fisheries management
advice
Knowledge Discovery by Accuracy Maximization
A Genetic Algorithm for Fixed-Size Subset Selection
Functional Summary and Meta-Analysis of Gene Expression Data
Supervised and Unsupervised Self-Organising Maps
An Improved Evaluation of Kolmogorov's Distribution
R Markdown Templates for the 'KOMA-Script' Classes
Koul's Minimum Distance Estimation in Linear Regression and
Autoregression Model by Coordinate Descent Algorithm
Cubic Spline Fitting with Knot Selection
Kernel PC Algorithm for Causal Structure Detection
Method for Clustering Partially Observed Data
A Quantified Implementation of the Kraljic Matrix
Kriging-based Inversion for Deterministic and Noisy Computer
Experiments
K-Sample Rank Tests and their Combinations
A Bayesian Approach for Protein Residue Contact Prediction using
the Knob-Socket Model of Protein Tertiary Structure
Goodness-of-Fit Tests using Kernelized Stein Discrepancy
Identify Kinase Substrate Relationships Using Dynamic Data
Co-Tucker3 Analysis of Two Sequences of Matrices
Configurable function for solving families of nonlinear
equations
k-Top Scoring Pairs for Microarray Classification
Datasets and functions from the (now non-existing) Faculty of
Life Sciences, University of Copenhagen
Calculation of Groundwater Mounding Beneath an Infiltration
Basin
Utility Functions by Youyi, Krisz and Others
Multi-Scale Motions Separation with Kolmogorov-Zurbenko
Periodogram Signals
Kolmogorov-Zurbenko Fourier Transform and Applications
Kolmogorov-Zurbenko Spatial Smoothing and Applications
Sparse Generalized Linear Model with L0 Approximation for
Feature Selection
l2boost - Friedman's boosting algorithm for regularized linear
regression
Ordination and Multivariate Analysis for Ecology
Relabelling MCMC Outputs of Mixture Models
Convert labels or tables to a dendrogram
Identification, Tuning, Visualisation and Analysis of Labour
Market Areas
Libreria Del Laboratorio Di Statistica Con R
Data Sets for the Book "Experimental Design for Laboratory
Biologists"
Estimation of indicators on social exclusion and poverty
Duncan test, Tukey test and Scott-Knott test
Local Approximate Gaussian Process Regression
Tools for the Analysis of Ecosystem Metabolism
Lake Temperatures Collected by Situ and Satellite Methods from
1985-2009
Collection of Internal Consistency Reliability Coefficients
Modeling Data with Functional Programming
Tools for Modeling Data with Functional Programming
Probabilistic Models to Analyze and Gaussianize Heavy-Tailed,
Skewed Data
Liquid Association for Network Dynamics Detection
Landmark Estimation of Survival and Treatment Effect
Landmark Prediction of a Survival Outcome
Radiometric and topographic correction of satellite imagery
Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or
Temperature
Langevin Analysis in One and Two Dimensions
Data sets and functions with "Analyzing Linguistic Data: A
practical introduction to statistics"
Laplace Deconvolution with Noisy Discrete Non-Equally Spaced
Observations on a Finite Time Interval
Complete Environment for Bayesian Inference
Local Average Response Functions for Instrumental Variable
Estimation of Treatment Effects
Serialization Interface for Large List Objects
High-Quality Visualizations of Large, High-Dimensional Datasets
Least Angle Regression, Lasso and Forward Stagewise
Modelling Interactions in High-Dimensional Data with
Backtracking
Nonparametric P-Value Estimation for Predictors in Lasso
High-Dimensional Inference with the Penalized Score Test
L1 regularized regression (Lasso) solver using the Cyclic
Coordinate Descent algorithm aka Lasso Shooting
Draws Diagrams Useful for Checking Latent Scales
Latent Position and Cluster Models for Statistical Networks
Utilities for Delaying Function Execution
Functions to Calculate Common Laterality Statistics in
Primatology
Density estimation and nonparametric regression on irregular
regions
Extra Graphical Utilities Based on Lattice
Multiresolution Kriging Based on Markov Random Fields
Path Diagrams for Lavaan Models via DiagrammeR
Complex Survey Structural Equation Modeling (SEM)
Latent Variable Models with Censored and Binary Outcomes
Client for 'Turfjs' for 'Geospatial' Analysis
Tools for Biostatistics, Public Policy, and Law
Latent Budget Analysis for Compositional Data
Limited Memory BFGS Minimizer with Bounds on Parameters
Length-biased correction to survival curve estimation
Log-Binomial Regression with Constrained Optimization
Latent Class Analysis (LCA) with familial dependence in extended
pedigrees
Data sets for package ``LMERConvenienceFunctions''
Efficient Estimation of Discrete-Time Multivariate Frailty Model
Using Exact Likelihood Function for Grouped Survival Data
Extended Mixed Models Using Latent Classes and Latent Processes
A Tool for Selecting Genes Related to Survival Outcomes using
Longitudinal Gene Expression Data
Local Correlation, Spatial Inequalities, Geographically Weighted
Regression and Other Tools
Collapsed Gibbs Sampling Methods for Topic Models
Selection of Statistically Similar Research Groups
Tuning of the Latent Dirichlet Allocation Models Parameters
Interactive Visualization of Topic Models
Lan-DeMets Method for Group Sequential Boundaries
Linkage Disequilibrium Corrected by the Structure and the
Relatedness
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Hidden Markov Model for Financial Time-Series Based on Lambda
Distribution
LD LASSO Regression for SNP Association Study
Finding Locally D-optimal optimal designs for some nonlinear and
generalized linear models
Methods for likelihood-based dimension reduction in regression
Linear Dependence Statistics for High-Dimensional Data
Exact tests for Linkage Disequilibrium and Hardy-Weinberg
Equilibrium
Analysis and Visualization of Plant Leaf Angle Distributions
Rapid Digital Image Analysis of Leaf Area
Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
An R Gallery for China and Other Geojson Choropleth Map in
Leaflet
'ESRI' Bindings for the 'leaflet' Package
Extra Functionality for 'leaflet' Package
Interactive Web-Maps Based on the Leaflet JavaScript Library
Finds "Local Subnetworks" Within an Interaction Network which
Show Enrichment for Differentially Expressed Genes
Constructing Gene Co-Expression Networks for Single-Cell
RNA-Sequencing Data Using Pseudotime Ordering
Likelihood Estimation of Admixture in Parents From Offspring
Genotypes
latent effect adjustment after primary projection
Border and Area Estimation of Data Measured with Additive Error
Functions for Learning Bayesian Inference
An Implementation of Crawford's and Wright's Learning Curve
Production Functions
Data and functions to accompany the book "Learning R"
An Interactive Environment for Learning Statistics
Phylogenetic and Functional Analyses for Ecology
Latent Environmental & Genetic InTeraction (LEGIT) Model
Functions and datasets to accompany the book "Le logiciel R:
Maitriser le langage, Effectuer des analyses statistiques"
(french)
Tools for Data Handling and Analysis in Macroecology
Utilities for Formatting Strings with Consistent Capitalization,
Word Breaks and White Space
Plot Lexis Diagrams for Demographic Purposes
Extractive Summarization of Text with the LexRank Algorithm
Estimation of the Local False Discovery Rates by Type II Maximum
Likelihood Estimation
Calculation of Low Flow Statistics for Daily Stream Flow Data
Tools for linear grouping analysis (LGA)
Simulation and Estimation of Log-GARCH Models
Tests for Genetic Association/Gene-Environment Interaction in
Longitudinal Studies
Set-Based Tests for Genetic Association in Longitudinal Studies
A Set of Methods for Longitudinal Data Objects
Fit Sex-Specific Life History Models with Missing
Classifications
Computational Routines for Proton and Ion Radiotherapy
Linear Test Statistics for Permutation Inference
Linear Predictive Models Based on the 'LIBLINEAR' C/C++ Library
Linear Classification with Online Adaptation of Coordinate
Frequencies
Linearized Bregman Algorithms for Generalized Linear Models
Read, Create and Write 'PharmML' Standard Output (so) XML Files
Fast and Accurate Evaluation, Random Number Generation and
Parameter Estimation of Skew Stable Distributions
Light Cone Reconstruction of States - Predictive State
Estimation From Spatio-Temporal Data
Sensitivity Analysis for Case Weight in Normal Linear Regression
Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Financial and Actuarial Mathematics for Life Contingencies
Two-Parameter HMD Model Life Table System
Compute the Top Decile Lift and Plot the Lift Curve
Wavelet Lifting Estimators of the Hurst Exponent for Regularly
and Irregularly Sampled Time Series
Tools for Communication with Lightning-Viz Server
Implementation of the 'Lights Out' Puzzle Game
Methods for Maximum Likelihood Estimation
Linear Inverse Model examples and solution methods
Jitter/CI Plot with Ordered Points Below the Limit of Detection
Binning and Plotting of Linearly Referenced Data
Static Univariate Frequentist and Bayesian Linear Calibration
Functions to Explore L-Systems (Lindenmayer Systems)
The Lindley Distribution and Its Modifications
Minimum Distance Estimation in Linear Regression Model
Manipulate Formulas and Evaluate Marginal Effects
Linking GIS, Remote Sensing and Other Command Line Tools
Plot Linkage Group Maps with Quantitative Trait Loci
Tools for Generating, Visualizing, and Analysing Link
Communities in Networks
Linkage information based genotype imputation method
Interactive Interpretation of Linear Regression Models
Manipulation of Linear Systems of (in)Equalities
Implements Queue, PriorityQueue and Stack Classes
Fitting lasso penalised additive isotone models
Statistical Methods for the Item Count Technique and List
Experiment
List-Based Rules for Dynamic Treatment Regimes
Tests of independence based on the Longest Increasing
Subsequence
'htmlwidget' for Interactive Views of R Lists
Lightweight Portable Message Queue Using 'SQLite'
Liu Regression with Liu Biasing Parameters and Statistics
Leveraging Learning to Automatically Manage Algorithms
Local Log-linear Models for Capture-Recapture
Add Standardized Regression Coefficients to lm-Objects
Linear Mixed-Effects Models using 'Eigen' and S4
Linear Mixed-Effects Models with Censored Responses
Linear Mixed Effects Models for Genome-Wide Association Studies
Linear Mixed Effects Models for QTL Mapping for Multienvironment
and Multitrait Analysis
Compute the Personalized Activity Index Based on a Negative
Binomial Model
Compute the Personalized Activity Index Based on a Flexible
Bayesian Negative Binomial Model
Linear Mixed Effects Models with Non-Stationary Stochastic
Processes
Model Selection and Post-hoc Analysis for (G)LMER Models
Bootstrap Methods for Nested Linear Mixed-Effects Models
Add smoothing spline modelling capability to nlme
Latent Markov Models with and without Covariates
Testing for a subset of variance components in linear mixed
models
Functions for estimation and inference of selection in
age-structured populations
Linear Mixed Effect Model Splines for Modelling and Analysis of
Time Course Data
L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Regional Frequency Analysis using L-Moments
Linear Ridge Regression with Ridge Penalty and Ridge Statistics
Linear Regression with Non-Constant Variances
Long Non-Coding RNA Identification Based on Features of
Sequence, EIIP and Secondary Structure
Predicting Modulator and Functional/Survival Analysis
Identifying the Pathways Regulated by LncRNA Sets of Interest
Prioritizing Candidate LncRNAs Based on a Composite Multi-Level
Network
LogNormal Response Time Item Response Theory Models
Nonparametric Methods for Generating High Quality Comparative
Effectiveness Evidence
Functions for Performing Local FDR Estimation when Null and
Alternative are Poisson
Local Regression, Likelihood and Density Estimation
Test of Stationarity and Localized Autocovariance
Datasets for "Statistics: UnLocking the Power of Data"
Datasets for 'Statistics: Unlocking the Power of Data'
Dependency-Free Access to PNG Image Files
Genome-Wide Association Analysis of a Biomarker Accounting for
Limit of Detection
A simple logging system for R, based on log4j
Relative Risk Regression Using the Log-Binomial Model
Log-concave Density Estimation in Arbitrary Dimensions
Maximum likelihood estimation of a log-concave density based on
censored data
Estimate a Log-Concave Probability Density from Iid Observations
Compute MLE of Log-Concave Density on R with Fixed Mode, and
Perform Inference for the Mode
Estimate a Log-Concave Probability Mass Function from Discrete
i.i.d. Observations
CoxPH Model with Log Concave Baseline Distribution
LOGICOIL: multi-state prediction of coiled-coil oligomeric
state
Logistic Regression with Misclassification in Dependent
Variables
Diagnostic Tests for Models with a Binomial Response
Functions, Data and Code for Binary and Binomial Data
Fitting l2-regularized logit choice models via generalized
gradient descent
Infer network based on binary arrays using regularized logistic
regression
Functions for the Logitnormal Distribution
Double log normal distribution functions
Log-Multiplicative Models, Including Association Models
Natural Logarithms of the Gamma Function for Large Values
Logrank Test for Aggregated Survival Data
Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Package for Plotting Categorical Longitudinal and Time-Series
Data
Model-Based Clustering and Classification for Longitudinal Data
Statistics for Long-Memory Processes (Jan Beran) -- Data and
Functions
Sample Size Calculations for Longitudinal Data
Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
loop decomposition of weighted directed graphs for life cycle
analysis, providing flexbile network plotting methods, and
analyzing food chain properties in ecology
A Collection of Tools to Conduct Levins' Loop Analysis
Uses an Archive to Amend Previous Stages of a Pipe using Current
Output
Logistic Ordinal Regression Differential Item Functioning using
IRT
LOw Rand and sparsE Covariance matrix estimation
Missing Morphometric Data Simulation and Estimation
Runs Lotka's Law which is One of the Special Applications of
Zipf's Law
Lassoed principal components for testing significance of
features
Local Polynomial Density Estimation and Inference
Local polynomial estimators of intensity function or its
derivatives
'dplyr' Verbs for Lists and Other Verbs for Data Frames
Linear Parametric Models Applied to Hydrological Series
Local Polynomial Estimators in Measurement Error Models
Merging linkage maps by linear programming
Modeler for linear programs (LP) and mixed integer linear
programs (MILP)
Linear Predictor Score, for Binary Inference from Multiple
Continuous Variables
Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
R Interface to 'lp_solve' Version 5.5.2.0
Learned Pattern Similarity and Representation for Time Series
LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series
Modelling
Dose Response Signal Detection under Model Uncertainty
Sources an R "Module" with Caching & Encapsulation, Returning
Exported Vars
Different Types of Estimators to Deal with Multicollinearity
A Likelihood Ratio Test Accounting for Genetic Heterogeneity
Locally stationary two-dimensional wavelet process estimation
scheme
A Multiscale Test of Spatial Stationarity for LS2W processes
Applied Latent Semantic Analysis (LSA) Functions
Datensätze und Übungsmaterial zu 'Large-Scale Assessment mit R'
Functions to Facilitate the Simulation of Large Scale Assessment
Data
Least-Squares Bilinear Clustering for Three-Way Data
Local Statistical Complexity - Automatic Pattern Discovery in
Spatio-Temporal Data
Solving Least Squares Problems under Equality/Inequality
Constraints
Linear Multiple Output Sparse Group Lasso
American options pricing with Least Squares Monte Carlo method
Lysate and Secretome Peptide Feature Plotter
Linear Splines with Convenient Parametrisations
Classification using LS-PLS for Logistic Regression
Companion to "Learning Statistics with R"
the accelerated failure time model to right censored data based
on least-squares principle
Simulation-Based Bayesian Inference for Latent Traits of Item
Response Models
Longitudinal Targeted Maximum Likelihood Estimation
LTPD and AOQL Plans for Acceptance Sampling Inspection by
Variables
Survival Trees to Fit Left-Truncated and Right-Censored and
Interval-Censored Survival Data
Ridge and Liu Estimates based on LTS (Least Trimmed Squares)
Method
Lightweight Sparklines for a LaTeX Document
Likelihood inference from case-control data Under Covariate
Assumptions (LUCA)
Printing Floating Point Numbers in a Human-Friendly Format
Comprehensive Luminescence Dating Data Analysis
Lunar Phase & Distance, Seasons and Other Environmental Factors
A Latent Variable Model for Mixed Continuous and Ordinal
Responses
An Automated Approach to Evaluating Dose-Effect Experiments
Following Litchfield and Wilcoxon (1949)
Accurate Estimation of Clonal Coincidences and Abundances from
Biological Replicates
Exact Spike Train Inference via L0 Optimization
Movement to Behaviour Inference using Random Forest
Data from the M4 Time Series Forecasting Competition
Binary and Multiclass Boosting Algorithms
Mediation Analysis of Causality under Confounding
Machina Time Series Generation and Backtesting
Retrieve Data from MacLeish Field Station
Class prediction based on microarray data and clinical
parameters
Automatic Differentiation of Multivariate Operations
MHC Allele-Based Differencing Between Populations
May All Data be Reproducible and Transparent (MADRaT) *
A Flexible Microarray Data Simulation Model
Data Class and Tools for Handling Spatial-Temporal Data
Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick
Support
Magic Functions to Obtain Results from for Loops
Advanced Graphics and Image-Processing in R
A Pipeline for Meta-Genome Wide Association
Magnetic Laplacian Matrix and Magnetic Eigenmap Visualization
Implements the O'Connell-Dobson-Schouten Estimators of Agreement
for Multiple Observers
A Graphical User Interface for Microarray Data Analysis and
Annotation
Create Dummy Variables from Categorical Data
Creates an empty package framework for the LCFD format
Machine Learning Assisted Network Inference
Quantitative Analysis of Mass Spectrometry Data
MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis
A wrapper around the Java machine learning tool MALLET
Calculation of Minimum Averaged Mean Squared Error (MAMSE)
Weights
Matrix Analysis and Normalization by Concordant Information
Enhancement
Interactive Q-Q and Manhattan Plots Using 'plotly.js'
Access and Process Data and Documents of the Manifesto Project
An R Interface to the 'ROPTLIB' Library for Riemannian Manifold
Optimization
Add Even More Interactivity to Interactive Charts
Manly Mixture Modeling and Model-Based Clustering
Analysis of Multivariate Data and Repeated Measures Designs
Multiple Testing Procedures of Cox (2011) and Wong and Cox
(2007)
Mapping Markers to the Nearest Genomic Feature
Interactive Editing of Spatial Data in R
Mapping Smoothed Effect Estimates from Individual-Level Data
Producing Administrative Boundary Map with Additional Features
Embedded
Geographic Display of Survey Data Statistics
Tools for Reading and Handling Spatial Objects
Mapping, pruning, and graphing tree models
Interactive Viewing of Spatial Objects in R
Multivariate Autoregressive Modeling for Analysis of Community
Time-Series Data
Multiplicative AR(1) with Seasonal Processes
Migration and Range Change Estimation in R
Estimation of Meiotic Recombination Rates Using Marey Maps
Approximate marginal inference for regression-scale models
Benchmark Data Sets and Functions for Marine Species
Distribution Modelling
Mark-Recapture Analysis for Survival and Abundance Estimation
Markov Chain Models for Phylogenetic Trees
Easy Handling Discrete Time Markov Chains
Statistical Significance of the Markowitz Portfolio
Multivariate Analysis Based on Relative Likelihoods
Import, Plot and Analyze Bathymetric and Topographic Data
An algorithm for least-squares curve fitting
Simulation, Estimation and Selection of MARX Models
Mandallaz' Model-Assisted Small Area Estimators
Build Data Structures for Common Statistical Analysis
Support Functions and Datasets for Venables and Ripley's MASS
Body Mass Estimation Equations for Vertebrates
ML and MCMC Methods for Pedigree Reconstruction and Analysis
Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
Multivariate and Propensity Score Matching with Balance
Optimization
Computation of the Balance - Sample Size Frontier in Matching
Methods for Causal Inference
Nonparametric Preprocessing for Parametric Casual Inference
Calculates SE for Matched Samples from 'MatchIt'
Combining Matching and Linear Regression for Causal Inference
Optimal Multilevel Matching using a Network Algorithm
A Code Converter from the Matlab/Octave Language to R
Tools to Assess Mating Potential in Space and Time
Measuring Association and Testing Independence Efficiently
An Interface for MATLAB using System Calls
Matrix Functions for Teaching and Learning Linear Algebra and
Multivariate Statistics
Matrix Clustering with Gaussian and Manly Mixture Models
Sparse and Dense Matrix Classes and Methods
Collection of functions for matrix calculations
Matrix eQTL: Ultra fast eQTL analysis via large matrix
operations
Normalized Laplacian Matrix and Laplacian Map
Penalized Matrix-Normal Linear Discriminant Analysis
Modelling with Sparse And Dense Matrices
Matrix-Based Partial Least Squares Estimation
Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Data.frame-Like Operations on Sparse and Dense Matrix Objects
Modern Calibration Functions for the Modern Analog Technique
(MAT)
Decision Models with Multi Attribute Utility Theory
Three methods to identify differentially expressed gene sets,
ordinary least square test, Multivariate Analysis Of Variance
test with n contrasts and Random forest
Exact max-type Cochran-Armitage trend test(CATT)
Low-memory Multinomial Logistic Regression with Support for Text
Classification
Maximum Likelihood Estimation and Related Tools
Model Species Distributions by Estimating the Probability of
Occurrence Using Presence-Only Data
Maximum Matching for General Weighted Graph
Fitting 'Maxent' Species Distribution Models with 'glmnet'
Orthogonal Data Projections with Maximal Skewness
Spatial Data Download and Utility Functions
Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and
Destruction Rate Modelling
Multivariate Bias Correction of Climate Model Outputs
Moment-Based Estimation for Hierarchical Models
Spatial Designs for Ecological and Environmental Surveys
Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
Model Based Multifactor Dimensionality Reduction
Median Bias Reduction in Binomial-Response GLMs
Multivariate Bayesian Sparse Group Selection with Spike and Slab
Access Data from the Massachusetts Bay Transit Authority (MBTA)
Web API
Multivariate Bayesian Variable Selection Method Exploiting
Dependence among Outcomes
Tools for Two-Dimensional Monte-Carlo Simulations
Translates information from netcdf files with MC2 output into
inter-PVT transitions
Matrix Computation Based Identification Of Prime Implicants
Functions to Support the Multicriteria Decision Aiding Process
Multi-Criteria Decision Making Methods for Crisp Data
Maximum Likelihood Estimation for Generalized Linear Mixed
Models
Machine Coded Genetic Algorithms for Real-Valued Optimization
Problems
Mixtures of Contaminated Gaussian Factor Analyzers
Warnes and Raftery's MCGibbsit MCMC diagnostic
Multivariate Covariance Generalized Linear Models
Global optimization using Monte Carlo and Quasi Monte Carlo
simulation
Monte Carlo hypothesis tests with Sequential Stopping
Multiplicative Competitive Interaction (MCI) Model
IRT models for multiple choice items (mcIRT)
Estimating Conditional Auto-Regressive (CAR) Models using Monte
Carlo Likelihood Methods
Gaussian Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Posterior Distribution of Extreme Value Models in R
Bayesian Analysis of Multivariate Counts Data in DNA
Metabarcoding and Ecology
Precision of Discrete Parameters in Transdimensional MCMC
Tools to Visualize, Manipulate, and Summarize MCMC Output
A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem
Multiple Criteria Optimization Algorithms and Related Functions
Objects and Methods for Multi-Companion Matrices
Conjoint Analysis through Averaging of Multiple Analyses
Estimating Preferential Attachment from a Single Network
Snapshot by Markov Chain Monte Carlo
Multiple Comparisons Using Normal Approximation
A Simplified Interface for Running Commands on Parallel
Processes
A Monte Carlo permutation method for multiple test correlation
Design and Analysis of Dose-Finding Studies
Testing Generalized Linear Hypotheses for Generalized Linear
Model Parameters by Profile Deviance
Functions for Monte Carlo Methods with R
Selecting Bandwidth for Kernel Density Estimator with Minimum
Distance Method
Mixture and Flexible Discriminant Analysis
Multivariate Data Analysis for Chemometrics
Measuring the Difference Between Two Empirical Distributions
Multivariate Double Hierarchical Generalized Linear Models
Multi-Dimensional MA Normalization for Plate Effect
Produces Markdown Log File with a Built-in Function Call
Graph-Constrained Regression with Enhanced Regularization
Parameters Selection
Detect gene-gene interactions using multifactor dimensionality
reduction
Improved Score Tests for Generalized Linear Models
Functions for Analysis of Data with General Recognition Theory
Searching for Optimal MDS Procedure for Metric Data
Complement to 'Modern Data Science with R'
A Computationally Efficient Mean Shift Implementation
Detection and Control of Tree-Ring Widths on Scanned Image
Sections
Maximum Entropy Bootstrap for Time Series
Fits the Mixture of Experts Latent Position Cluster Model to
Network Data
Multi Calculator to Compute Scores of Adherence to Mediterranean
Diet
Bayesian Methods for Identifying the Most Harmful Medication
Errors
Flexible Mediation Analysis Using Natural Effect Models
Medical Risk and Comorbidity Tools for ICD-9-CM Data
Tools for Obtaining and Cleaning Medicare Public Use Files
Simple Mediation and Moderation Analysis
A max-margin supervised Sparse Topical Coding Model
Multivariate Data Handling in Ecology and Biogeography
Multivariate Data Handling with S4 Classes and Sparse Matrices
Multiscale Clustering of Geometrical Network
Interactive model exploration using GGobi
Simulation of Meiosis in Plant Breeding Research
Matching Event Data by Location, Time and Type
View and Classify MELODIC Output for ICA+FIX
The Moving Epidemic Method Web Application
Spatial pattern detection in genetic distance data using Moran's
Eigenvector Maps
Tools for Management of Survey Data and for the Presentation of
Analysis Results
In-Memory Caching for Repeated Computations
Data sets from Mixed-effects Models in S
Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models
Tools for Analyzing Mixed Effect Regression Models
Simplification of Surface Triangular Meshes with Associated
Distributed Data
Meta-Analysis for Diagnostic Test Studies
An Interactive Visualisation of Meta-Analysis as a Physical
Weighing Machine
Meta-analysis of genome-wide SNP association results
Bayesian Model Averaging for Random and Fixed Effects
Meta-Analysis
Probabilistic latent variable models for metabolomic data
Annotation of Metabolites from Liquid Chromatography-Mass
Spectrometry Data
Normalize Metabolomic Data using QC Signal
Tools for Parsing, Manipulating, and Graphing Hierarchical Data
Analysis of the 'Elements of Metacommunity Structure'
Evaluate Periodicity in Large Scale Data
MetaDE: Microarray meta-analysis for differentially expressed
gene detection
Metapopulation simulations for conserving salmon through
portfolio optimization
Exploring Heterogeneity in Meta-Analysis using Random Forests
Fused Lasso Approach in Regression Coefficient Clustering
Comprehensive Research Synthesis Tools for Systematic Reviews
and Meta-Analysis
Inference in Meta Analysis and Meta Regression
Metaheuristic Optimization Framework for Preprocessing
Combinations
An Implementation of Flower Pollination Algorithm in R
Landscape and Range Expansion Simulation
Likelihood Inference in Meta-Analysis and Meta-Regression Models
Metagenomics Longitudinal Differential Abundant Method
Bayesian Mixture Analysis for Metagenomic Community Profiling
Meta-Analysis of Studies with Non Statistically-Significant
Unreported Effects
Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)
MetaPCA: Meta-analysis in the Dimension Reduction of Genomic
data
Formalized Plots for Self-Describing Data
Creates CrossHairs Plots for Meta-Analyses
MetaQC: Objective Quality Control and Inclusion/Exclusion
Criteria for Genomic Meta-Analysis
Meta-Analysis using Structural Equation Modeling
Advanced Statistical Methods to Model and Adjust for Bias in
Meta-Analysis
Meta Analysis for SNP-Set (Sequence) Kernel Association Test
Subtracting Summary Statistics of One or more Cohorts from
Meta-GWAS Results
Meta-analysis for Classification Data and Correction to
Imperfect Reference
Variance-Covariance Matrix for Multivariate Meta-Analysis
Rainforest Plots and Visual Funnel Plot Inference for
Meta-Analysis
Spatio-Temporal Analysis and Mapping of Meteorological
Observations
Fitting and Plotting Tools for the Maximum Entropy Theory of
Ecology (METE)
Meth27QC: sample quality analysis, and sample control analysis
Functions for Analysis of Agreement in Method Comparison Studies
Bias and Precision Plots to Compare Two Measurements with
Possibly Heteroscedastic Measurement Errors
Full Bayesian Partition Model for Identifying Differentially
Methylated Loci
Detection of Differentially Methylated Regions using
MethylCap-Seq Data
Statistical Methods for Normalizing Metabolomics Data
Separate Metabolites into Likely Measurement Artifacts and True
Metabolites
Create Interactive Charts with the JavaScript 'MetricsGraphics'
Library
Test Metric and Null Model Statistical Performance
Find, Map, and Gather Environmental Data and Metadata
GUI Tool for Estimating Sample Sizes for Metabolomic Experiments
A Fixed Memeory Moving Expanding Window Average
Identifying Master Gene Regulators from Gene Expression and
DNA-Binding Data
Model-Free Knockoff Filter for Controlled Variable Selection
Multivariate Functional Principal Component Analysis for Data
Observed on Different Dimensional Domains
The Multiple Filter Test for Change Point Detection
Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR)
Processes
Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
Structural Pursuit Over Multiple Undirected Graphs
Multivariate Response Generalized Linear Models
Model Averaging for Multivariate GLM with Null Models
Estimating Time-Varying k-Order Mixed Graphical Models
mgpd: Functions for multivariate generalized Pareto distribution
(MGPD of Type II)
Graphing map attributes and non-map variables in R
API Client for the MG-RAST Server of the US DOE KBase
Gene set analysis based on GSZ-scoring function and asymptotic
p-value
General Markov Chain Monte Carlo for Bayesian Inference using
adaptive Metropolis-Hastings sampling
Minimum Hellinger Distance Test for Normality
Inference for Hidden Markov and Semi-Markov Models
Multiple Hypothesis Testing for Variable Selection in
High-Dimensional Linear Models
Multiple Hypothesis Test Based on Distribution of p Values
Multiple Hypotheses Testing for Discrete Data
Multiple Hypotheses Testing for Multiple Families/Groups
Structure
Bayesian Model Selection in Logistic Regression for the
Detection of Adverse Drug Reactions
Missing Data Imputation and Model Checking
Multivariate Imputation by Chained Equations
Some Additional Multiple Imputation Functions, Especially for
'mice'
Demand Analysis with the Almost Ideal Demand System (AIDS)
Analysis with the Constant Elasticity of Substitution (CES)
function
Symmetric Normalized Quadratic Profit Function
Multiple Imputation by Chained Equations with Multilevel Data
Multivariate Independent Comparison of Observations
Promotion Time Cure Model with Mis-Measured Covariates
Methods for Taxonomic Classification of Prokaryotes
Utilities for Official Spanish Microdata
Linked Micromap Plots for General U. S. and Other Geographic
Areas
R Graphics as Microplots (Sparklines) in 'LaTeX', 'HTML',
'Excel'
Multiple Imputation by Distance Aided Donor Selection
Nearly Exact Sample Size Calculation for Exact Powerful
Nonrandomized Tests for Differences Between Binomial
Proportions
Multiple Comparisons Procedures Based on Studentized Midrange
and Range Distributions
Implementing dispersal into species distribution models
Methods for the Indirect Estimation of Bilateral Migration
Graphical User Interface to the 'mi' Package
Multiple Imputation for Interval Censored Data
Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
MIcrosimulation Lung Cancer (MILC) model
Multiple-Instance Logistic Regression with LASSO Penalty
Mixture summary method for multiple imputation
Data sets included in Utts and Heckard's Mind on Statistics
Convert Files Between Markdown or Rmarkdown Files and Mindmaps
Maximal Information-Based Nonparametric Exploration for Variable
Analysis
Implementation of the Well-Known Game to Clear Bombs from a
Given Field (Matrix)
Create a Mini Version of CRAN Containing Only Selected Packages
R Interface to the Levenberg-Marquardt Nonlinear Least-Squares
Algorithm Found in MINPACK, Plus Support for Bounds
Gene region-level testing procedure for SNP data, using the min
P test resampling approach
Derivative-free optimization algorithms by quadratic
approximation
An R Package for Linear Mixed Model Analyses
MINimal VALidation for Stoichiometric Reactions
Multidimensional Iterative Proportional Fitting and Alternative
Models
Mutant Identification through Probabilistic High throughput
Enabled NOrmalization
Microbiome Regression-Based Kernel Association Test
Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples
Computerized Adaptive Testing with Multidimensional Item
Response Theory
Miscellaneous Useful Functions Including LaTeX Tables, Kalman
Filtering and Development Tools
Computation of Generalized Linear Models with Misclassified
Covariates Using Side Information
Miscellaneous Functions for the Correlation Coefficient
Microbiome Based Sum of Powered Score (MiSPU) Tests
Statistical Analysis of Misreporting on Sensitive Survey
Questions
Simulating and Analyzing Time to Event Data in the Presence of
Population Mortality
Nonparametric Missing Value Imputation using Random Forest
Handling Missing Values with Multivariate Data Analysis
Testing Homoscedasticity, Multivariate Normality, and Missing
Completely at Random
Mixed effects Score Test for continuous outcomes
Data Sets, Functions and Examples from the Book: "Modern
Industrial Statistics" by Kenett, Zacks and Amberti
Methods in Structural Reliability Analysis
Mixture of Student t Distributions using Importance Sampling and
Expectation Maximization
Tools for Multiple Imputation in Multilevel Modeling
Tools for multiple imputation of missing data
Estimation/Multiple Imputation for Mixed Categorical and
Continuous Data
Multivariate Normal Mixture Models and Mixtures of Generalized
Linear Mixed Models Including Model Based Clustering
Mixed effects cumulative link and logistic regression models
Missing Data Imputation for Continuous and Categorical Data
using Nonparametric Bayesian Joint Models
Tools for Discrete Multivariate Mixed Membership Models
Estimation Methods for Stochastic Differential Mixed Effects
Models
A Mixed-Effects Model for Analyzing Cluster-Level Non-Ignorable
Missing Data
Design and Analysis of Mixture Experiments
Evaluation of the FIM in NLMEMs using MCMC
Model Based Clustering, Classification and Discriminant Analysis
Using the Mixture of Generalized Hyperbolic Distributions
Omics Data Integration Using Kernel Methods
Mixed Model ANOVA and Statistics for Education
Finite Mixture Modeling for Raw and Binned Data
Functions to fit mixtures of regressions
A Random-Forest-Based Approach for Imputing Clustered Incomplete
Data
Forensic Genetics DNA Mixture Separation
Simulating Data to Study Performance of Clustering Algorithms
Fitting Finite Mixture of Scale Mixture of Skew-Normal
Distributions
DE Analysis of RNA-Seq Data by Mixtures of NB
Tools for Analyzing Finite Mixture Models
Curve Fitting and Mixture Toxicity Assessment
Mixture Models for Clustering and Classification
Mixture Regression Models for Left-Truncated and
Interval-Censored Data
Multi-species sIZE spectrum modelling in R
2D and 3D movement-based kernel density estimates (MKDEs)
Kinetic Evaluation of Chemical Degradation Data
Efficient multi-level k-circulant supersaturated designs
Latent Class Item Response Theory (LC-IRT) Models under
Within-Item Multidimensionality
Machine Learning-based Differential Network Analysis of
Transcriptome Data
Exploratory Data Analysis and Manipulation of Multi-Label Data
Sets
R Ultimate Multilabel Dataset Repository
Machine learning algorithms with unified interface and confusion
matrices
Computation of the MLE for bivariate (interval) censored data
Maximum Likelihood Estimates of Gaussian Processes
Expected/Observed Fisher Information and Bias-Corrected Maximum
Likelihood Estimate(s)
Independent Component Analysis using Maximum Likelihood
ML estimation under multivariate linear mixed models with
missing values
Examples from Multilevel Modelling Software Review
Bayesian Model Averaging for Multinomial Logit Models
Multi-Label Prediction Using Gibbs Sampling (and Classifier
Chains)
A Toolbox for Model-Based Optimization of Expensive Black-Box
Functions
A package for Multilinear Regression Model Population Analysis
Use the MLS Junk Generator Algorithm to Generate a Stream of
Pseudo-Random Numbers
Most Likely Transformations: Documentation and Regression Tests
Single-Sample Classifier of Medulloblastoma Subtypes for
Medulloblastoma Patient Samples, Mouse Models, and Cell Lines
Gene Expression Datasets for the 'MM2S' Package
Mathematical Morphology in Any Number of Dimensions
Multivariate Multinomial Distribution Approximation and
Imputation for Incomplete Data
Estimation of Multinormal Mixture Distribution
an R package for analyzing multivariate longitudinal data with
multivariate marginal models
Multivariate marginal models with shared regression parameters
Multi-Marker Molecular Signature for Treatment-specific Subgroup
Identification
Modern Measures of Population Differentiation
Implementation of Marker-Assisted Mini-Pooling with Algorithm
Monte-Carlo Methods for Prediction Functions
Various Similarity and Distance Metrics for Marked Point
Processes
Markov Modulated Poisson Process for Unsupervised Event
Detection in Time Series of Counts
Model-Based Clustering and Classification with Mixtures of
Modified t Factor Analyzers
Convert Dates to MMWR Day, Week, and Year
Easy Downloading Capabilities for the Members' Name Information
Service
Multivariate Nonparametric Methods. An Approach Based on Spatial
Signs and Ranks
Multivariate Normal Distributions with Power Integrand
The Multivariate Normal and t Distributions
R Package for Fitting the Multinomial Probit Model
MNREAD Parameters Estimation and Curve Plotting
Multi-objective optimization for collecting cluster alternatives
Extraction of Bands from MODIS Surface Reflectance Product MOD09
NRT
Multiscale Analysis for Density Functions
Classes and Methods for Training and Using Binary Prediction
Models
Model-free estimation of a psychometric function
Modeling and Map Production using Random Forest and Stochastic
Gradient Boosting
A Model Object Framework for Regression Analysis
Modelling Functions that Work with the Pipe
Tools and Classes for Statistical Models
Find the Modes and Assess the Modality of Complex and Mixture
Distributions, Especially with Big Datasets
Evaluation of Classification Model Options
Acquisition and Processing of MODIS Products
R tools for processing Level 2 Cloud Mask products from MODIS
Provides a Function to Download MODIS Snow Cover
A Tool for Automating Download and Preprocessing of MODIS Land
Products Data
Calculating Marginal Effects and Levels with Errors
Community Structure Detection via Modularity Maximization
Modelling temperature effects using time series data
Multiobjective Genetic Algorithm for Variable Selection in
Regression
Dental Surface Complexity Measurement Tools
Moment-Matching Methods for Weighted Sums of Chi-Squared Random
Variables
Moments, cumulants, skewness, kurtosis and related tests
Maximum Likelihood Analysis of Animal Movement Behavior Using
Multivariate Hidden Markov Models
A Simple Graphical Representation of the Relative Occurrence and
Co-Occurrence of Events
Accesses the Monkeylearn API for Text Classifiers and Extractors
Monotone Multi-Layer Perceptron Neural Network
Geometric Morphometric Analysis of Monogenean Anchors
Estimation for Multivariate Normal and Student-t Data with
Monotone Missingness
Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups
in a Phylogeny
Bayesian Monotonic Regression Using a Marked Point Process
Construction
Automatic Parallelized Monte Carlo Simulations
Functions and Datasets for the Book by Keon-Woong Moon
Species Distribution MOdeling with Pseudo-Absences
MOPSOCD: Multi-objective Particle Swarm Optimization with
Crowding Distance
Basic Quality Data Assurance for Epidemiological Research
Check Time Homogeneity and Markov Chain Order
Color schemes compatible with red-green color perception
difficulties
Calculations and Visualisations Related to Geometric
Morphometrics
MOdelling Tools for Reproduction and Survival Data in
Ecotoxicology
Simple raw data generator based on user-specified summary
statistics
Smoothing and Forecasting Poisson Counts with P-Splines
Project MOSAIC Statistics and Mathematics Teaching Utilities
Function-Based Numerical and Symbolic Differentiation and
Antidifferentiation
Common Utilities for Other MOSAIC-Family Packages
Learning Hybrid Bayesian Networks using Mixtures of Truncated
Basis Functions
Mountain Plots, Folded Empirical Cumulative Distribution Plots
Mouse-Tracking Measures from Trajectory Data
Visualizing and Analyzing Animal Track Data
Animal Movement Modelling using Hidden Markov Models
Estimate Wind Speeds from Bird Trajectories
Mixtures of von Mises-Fisher Distributions
Multi-Patient Analysis of Genomic Markers
Multinomial Probit Bayesian Additive Regression Trees
Multivariate Process Capability Indices (MPCI)
Data sets and scripts for Modeling Psychophysical Data in R
The package can implement the network-based metabolite pathway
identification of pathways
Modified Profile Likelihood Estimation for Weibull Shape and
Regression Parameters
Graphical Model Stability and Variable Selection Procedures
Automating Mplus Model Estimation and Interpretation
Symbolic Computation and More with Multivariate Polynomials
Mposterior: R package for Robust and Scalable Bayes via a Median
of Subset Posterior Measures
Statistics for analysing multiple simultaneous point processes
on the real line
Modeling Phylogenetic Signals using Eigenvector Maps
Analyze Multinomial Processing Tree Models
Data Sets from Montgomery, Peck and Vining's Book
Metabolomic Quantitative Trait Locus Mapping
Inferences for ratios of coefficients in the general linear
model
Scale Space Multiresolution Analysis of Random Signals
Multivariate Regression with Covariance Estimation
Numerical Tools for Filling Out an NCAA Basketball Tournament
Bracket
Methods for Analyzing Multiple Response Categorical Variables
(MRCVs)
Fits regression models when the outcome is partially missing
Marine Regions Data from 'Marineregions.org'
Fitting and Predicting Large-Scale Nonlinear Regression Problems
using Multi-Resolution Functional ANOVA (MRFA) Approach
Depth Measures in Multivariate, Regression and Functional
Settings
Simulate from ODE-Based Population PK/PD and Systems
Pharmacology Models
Multi-Resolution Estimation of the Hazard Rate
Modified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted
Rand Index (1 and 2.1 and 2.2)
An R Package for Conditional Maximum Likelihood Estimation in
Mixed Rasch Models
Multi-Locus Random-SNP-Effect Mixed Linear Model for Genome-Wide
Association Studies and Linkage Analyses
Multivariate Regression Models for Reserving
R package for parallelized mRMR ensemble feature selection
Minimal Clinically Important Difference and Response Shift
Effect for Health-Related Quality of Life
Multi-Resolution Scanning for Cross-Sample Differences
Multinomial Response Models with Structured Penalties
A multiplicative-regression model for relative survival
A Sample Size Calculator for Micro-Randomized Trials
Multiresolution time warping for functional data
Multi-Step Adaptive Estimation Methods for Sparse Regressions
Statistical analysis for Methylation-sensitive Amplification
Polymorphism data
Multiscale Bernstein Polynomials for Densities
Markov-Switching, Bayesian, Vector Autoregression Models
Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint'
Documents
Multivariate Synthetic Control Method Using Time Series
Combine Data from Positive and Negative Ionization Mode Finding
Common Entities
R Client for the Microsoft Cognitive Services Text Analytics
REST API
R Client for the Microsoft Cognitive Services Web Language Model
REST API
Bayesian Inference for Multivariate Stochastic Differential
Equations
Metabolite set enrichment analysis for factor loading in
principal component analysis
Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS)
data
Data and Functions for the Book Modern Statistical Graphics
High Dimensional Multiclass Classification Using Sparse Group
Lasso
Multivariate Sparse Group Lasso for the Multivariate Multiple
Linear Regression with an Arbitrary Group Structure
A library to serialize or unserialize data in MessagePack format
Degrees of freedom of elastic net, adaptive lasso and
generalized elastic net
Tools for Developing Diagnostic Messages
Assess Tumor Microsatellite Instability with a Decision Tree
Classifier from Exome Somatic Mutations
Improved Techniques to Estimate Trend, Velocity and Acceleration
from Sea Level Records
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions and Datasets for "Methods of Statistical Model
Estimation"
Building Augmented Data to Run Multi-State Models with 'msm'
Package
Data Sets and Functions Used in Multivariate Statistics: Old
School by John Marden
Morse-Smale Approximation, Regression and Visualization
Package for Calculation of ARMSS, Local MSSS and Global MSSS
Nonparametric Estimation for Multistate Models
Data Preparation, Estimation and Prediction in Multi-State
Models
Procedures to Generate Patterns under Multistage Testing
Read Data from Delimited 'MTConnect' Data Files and Perform some
Analysis
Mass Transportation Distance Rank Histogram
Maximum Tangent Likelihood and Other Robust Estimation for
High-Dimensional Regression
Sample Size and Post-Hoc Power of Association Studies Involving
Mitochondrial DNA Haplogroups
All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS)
and Estimating Multivariate Volatility Models
Multivariate time series data imputation
Methods in Mahalanobis-Taguchi (MT) System
Munich Franz-Josef-Strauss Airport Pattern Analysis
Data on Freedom of Information Act Requests
Interchange Tools for Multi-Parameter Spatiotemporal Data
A Nonparametric Model for Unfolding Scale Analysis
Hazard Function Estimation in Survival Analysis
Exploring Data with Tree Data Structures
Generates Muller Plot from Population/Abundance/Frequency
Dynamics Data
Optimal Allocation in Stratified Sampling
Simultaneous Inference in General Parametric Models
Multiple Equivalence Tests and Simultaneous Confidence Intervals
Optimal Exact Tests for Multiple Binary Endpoints
GEE Solver for Correlated Nominal or Ordinal Multinomial
Responses
Apply Functions to Multiple Multidimensional Arguments
Finite Difference Method for Multi-Asset Option Valuation
Flexible Modeling of Multivariate Count Data via the
Multivariate Conway-Maxwell-Poisson Distribution
Multiple Copy Number Variation Detection
Permutations of Multisets in Cool-Lex Order
Multivariate Analysis and Visualization for Biological Data
Read Fixed Width Format Files Containing Lines of Different Type
Transitive Index Numbers for Cross-Sections and Panel Data
Multidimensional Latent Class Item Response Theory Models
Capture-Mark-Recapture Analysis using Multiple Non-Invasive
Marks
Meta-analysis of Multivariate Genome Wide Association Studies
Regression analysis of overdispersed correlated count data
Analysis and Mining of Multilayer Social Networks
Simultaneous confidence intervals for multinomial proportions
according to the method by Sison and Glaz
Robust Estimation of Overdispersed Multinomial Regression Models
Generation of Multivariate Ordinal Variates
Infrastructure to Assemble Multi-Panel Figures (from Grobs)
A Package to Test for Pleiotropic Effects
Variable Importance Analysis with Population Intervention Models
Weighted Cox-Regression for Nested Case-Control Data
Algebraic Tools for the Analysis of Multiple Social Networks
Data Manipulation with Parallelism and Shared Memory Matrices
Calculate Multivariate Richness via UTC and sUTC
Bias, Precision, and Power for Multi-Level Random Regressions
Causal Mediation Analysis in Multisite Trials
Measures, Tests and Removes Multivariate Skewness
Clustering a Data Set using Multi-SOM Algorithm
MultiSV: an R package for identification of structural
variations in multiple populations based on whole genome
resequencing
Spectral Analysis Tools using Multitaper Method
Models Multivariate Cases Using Random Forests
Variable Selection in the Multivariate Linear Model
Estimation of Multivariate Long-Memory Models Parameters
Common Multiple Testing Procedures and Gatekeeping Procedures
Metabolomics Univariate and Multivariate Analysis
Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
Murphy Diagrams for Forecast Comparisons
Monetary Unit Sampling and Estimation Methods, Widely Used in
Auditing
Conversion of Nuclear Magnetic Resonance spectrum in audio file
A Graphical User Interface for the MuToss Project
Decipher Mutational Signatures from Somatic Mutational Catalogs
MultiClass Visualizable Classification using Combination of
Projections
An Introduction to Applied Multivariate Analysis with R
Statistical Methods for Analysing Multivariate Abundance Data
Modelling Multivariate Binary Data with Blocks of Specific
One-Factor Distribution
Workspace organization, code and documentation editing, package
prep and editing, etc
Multivariate Variance Components Tests for Multilevel Data
Wavelet analysis of multiple time series
Multivariate Generalized Linear Mixed Models for Ranking Sports
Teams
Influence Measures and Diagnostic Plots for Multivariate Linear
Models
Compute and Visualize Bivariate Associations
Multivariate Linear Model with Analytic p-Values
Multivariate, Locally Stationary Wavelet Process Estimation
Multivariate Meshes and Histograms in Arbitrary Dimensions
Multivariate and Univariate Meta-Analysis and Meta-Regression
Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Nelson-Aalen Estimator of the Cumulative Hazard in Multistate
Models
Fast Multivariate Normal and Student's t Methods
Moving Grid Adjustment in Plant Breeding Field Trials
ML estimation for multivariate normal data with missing values
Normality test for multivariate variables
Generate New Multivariate Normal Samples from Permutations
Goodness of Fit Tests for Multivariate Normality
Multivariate Outlier Detection Based on Robust Methods
Multivariate Peaks-over-Threshold Modelling for Spatial Extreme
Events
Orthant Probability of the Multivariate Normal Distribution
Mean and Variance of Truncated Normal Distribution
Generalized Shapiro-Wilk test for multivariate normality
Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Bayesian Inference for the Multivariate Skew-t Model
Estimation and Testing for the Multivariate t-Distribution
Causal Inference in Spatiotemporal Event Data
Multichannel Wavelet Deconvolution with Additive Long Memory
Noise
Penalized Moving-Window Lasso Method for Genome-Wide Association
Studies
Two Stage Moving-Window Ridge Method for Prediction and
Estimation
Efficient mixed-level k-circulant supersaturated designs
Integrative immunoinformatics for Mycobacterial diseases in R
platform
Automatic Correlation and Regression Test in a Data Frame
Interface to Myrrix. Myrrix is a complete, real-time, scalable
clustering and recommender system, evolved from Apache Mahout
External jars required for package Myrrix
Stepwise Variable Selection Procedures for Regression Analysis
Regression Models for Monozygotic Twin Data
Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low
Dimensions
Nondetects and Data Analysis for Environmental Data
High Performance Implementation of the Naive Bayes Algorithm
Using Needleman-Wunsch to Match Sample Names
Provide namespace managment functions not (yet) present in base
R
Data Structures, Summaries, and Visualisations for Missing Data
Tools for Nanoparticle Simulation and Calculation of PDF and
Total Scattering Structure Function
Normalize NanoString miRNA and mRNA Data
Performs the Processing and Normalisation of Nanostring miRNA
and mRNA Data
A Flexible and Robust Sys.sleep() Replacement
Nonlinear Cointegrating Autoregressive Distributed Lag Model
Subset- And Name-Aware Array Utility Functions
Collection of datasets from the ASA 2006 data expo
NeuroAnatomy Toolbox for Analysis of 3D Image Data
NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron
Similarity and Clustering
NeuroAnatomy Toolbox ('nat') Extension for Handling Template
Brains
File System Utility Functions for 'NeuroAnatomy Toolbox'
Regression with NA Values in Unordered Factors
Maximum Likelihood method in estimating effective population
size from genetic data
Bayes Classifier for Verbal Autopsy Data
Determining the Best Number of Clusters in a Data Set
Vignette Engine Wrapping IPython Notebooks
NBD-Dirichlet Model of Consumer Buying Behavior for Marketing
Research
Functions for Optimal Non-Bipartite Matching
Negative Binomial Models for RNA-Sequencing Data
NCA Calculation and Population PK Model Diagnosis
Noncompartmental Analysis for Pharmacokinetic Report
Interface to Unidata netCDF (Version 4 or Earlier) Format Data
Files
Helper functions for use with the ncdf4 package
Extract Metadata from 'NetCDF' Files as Data Frames
Miscellaneous Functions for Creating Adaptive Functions and
Scripts
Regularization Paths for SCAD and MCP Penalized Regression
Models
Wicked-Fast Streaming 'JSON' ('ndjson') Reader
Efficient Network Enrichment Analysis Test
Calculating Effective Sizes Based on Known Demographic
Parameters of a Population
Negative Binomial and Beta Binomial Bayesian Regression Models
Estimating the Number of Essential Genes in a Genome
Classification, Regression, Clustering with K Nearest Neighbors
Access to the Neotoma Paleoecological Database Through R
Network Assisted Algorithm for Epigenetic Studies Using Mean and
Variance Combined Signals
Modeling and Generating Synthetic Versions of Nested Categorical
Data in the Presence of Impossible Combinations
Survival Analysis for Cohorts with Missing Covariate Information
Mann-Whitney-Wilcoxon Test for Nested Ranks
Inference of Species Associations from Co-Occurrence Data
Statistical Modeling with Network Cohesion
Analysis of Diffusion and Contagion Processes on Networks
Network Generator for Combinatorial Graph Problems
Estimating network indices, including trophic structure of
foodwebs in R
Network Meta-Analysis using Frequentist Methods
Origin Estimation for Propagation Processes on Complex Networks
Permutation Testing Network Module Preservation Across Datasets
Network Strengths and Weaknesses Analysis
Graphic Presentation of Complex Genomic and Network Data
Analysis
Bayesian Package for Network Changepoint Analysis
Statistical Comparison of Two Networks Based on Three Invariance
Measures
Tools for using Network Reporting Estimators
Simulate Bipartite Graphs with Fixed Marginals Through
Sequential Importance Sampling
Tools for Identifying Important Nodes in Networks
Visualization and Analysis Tools for Neural Networks
'Neuroconductor' Base Package with Helper Functions for 'nifti'
Objects
Data Structures and Handling for Neuroimaging Data
Toolbox for Psychologists, Neuropsychologists and
Neuroscientists
Functions to Generate fMRI Data Including Activated Data, Noise
Data and Resting State Data
Computes Pdf, Cdf, Quantile and Random Numbers, Measures of
Inference for 19 General Families of Distributions
Parallel Analysis and Non Graphical Solutions to the Cattell
Scree Test
Numerical Formal Concept Analysis for Systematic Clustering
A Simple General Purpose N-Gram Tokenizer
Fitting the Centered Autologistic and Sparse Spatial Generalized
Linear Mixed Models for Areal Data
Data from the US National Health and Nutrition Examination Study
Non-hierarchical evolutionary multi-objective tree learner to
perform cost-sensitive classification
Scores for Every Season Since the Founding of the NHL in 1917
Compiling the NHL Real Time Scoring System Database for easy use
in R
Non-Homogeneous Markov Switching Autoregressive Models
Modelling and Validation of Non Homogeneous Poisson Processes
(Niche) (R)egion and Niche (Over)lap Metrics for
Multidimensional Ecological Niches
MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal
Testing
Nonlinear least squares examples from NIST
Fundamental Physical Constants and Unit Conversions from NIST
Noninferiority Tests with Variable Margins
Solve Nonlinear Optimization with Nonlinear Constraints
Linear and Nonlinear Mixed Effects Models
Non-linear mixed-effects modelling in nlme using differential
equations
Datasets and utility functions enhancing functionality of nlme
package
Functions for Nonlinear Least Squares Solutions
Nonlinear Network Reconstruction and Clustering Based on DCOL
(Distance Based on Conditional Ordered List)
Higher Order Inference for Nonlinear Heteroscedastic Models
Non-Linear Relative Risk Estimation and Plotting
Fitting Structural Equation Mixture Models
Convenient Functions for Non-Linear Regression
Non-Linear Shrinkage Estimation of Population Eigenvalues and
Covariance Matrices
Nonlinear regression in predictive microbiology
Fitting nonlinear models with scale mixture of skew-normal
distributions
Non-Linear Model Fitting of Time Distribution of Biological
Phenomena
Utilities and Kinship Information for Research with the NLSY
A nondecimated lifting transform for signal denoising
Wald Test of Nonlinear Restrictions and Nonlinear CI
Network Meta-Analysis using Integrated Nested Laplace
Approximations
Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)
Non-Negative Matrix Factorization (NMF) using CUDA
Normalized Mutual Information of Community Structure in Network
Numerical Methods and Optimization in Finance
Understanding Nonlinear Mixed Effects Modeling for Population
Pharmacokinetics
Feed-Forward Neural Networks and Multinomial Log-Linear Models
Prediction Intervals of Multi-Layer Neural Networks
Non-Negative Lasso and Elastic Net Penalized Generalized Linear
Models
Fast and Versatile Non-Negative Matrix Factorization
The Lawson-Hanson algorithm for non-negative least squares
(NNLS)
Calculate Design Parameters for Biomarker Validation Studies
Node Harvest for Regression and Classification
Compares the Distribution of Sister Clades Through a Phylogeny
Implementation of the Natural and Orthogonal InterAction (NOIA)
model
Estimation of Intrinsic and Extrinsic Noise from Single-Cell
Data
Label Noise Filters for Data Preprocessing in Classification
Biplot representations of categorical data
U.S. Census Regional and Demographic Data
Noncompartmental Analysis for Pharmacokinetic Data
Causal Inference in the Presence of Treatment Noncompliance
Under the Binary Instrumental Variable Model
Bayesian Analysis of Randomized Experiments with Non-Compliance
Invariant Causal Prediction for Nonlinear Models
Loading NONMEM Output Files and Simulate with Parameter
Uncertainty
Create and Evaluate NONMEM Models in a Project Context
A Collection of Nonparametric Hypothesis Tests
Nonparametric Methods for Measuring Efficiency and Productivity
Model Checking and Variable Selection in Nonparametric
Regression
Stratification and matching by the propensity score
Detecting Isotope, Adduct and Homologue Relations in LC-MS Data
Quantized simulation data of isotope pattern centroids
Normal (1-d) Mixture Models (S3 Classes and Methods)
Dataset for Climate Analysis with Data from the Nordic Region
Analysis of multivariate normal datasets with missing values
Analysis of Incomplete Multivariate Data under a Normal Model
Routines for Exponential Power Distribution
Normalisation of Multiple Variables in Large-Scale Datasets
Evaluates complex erf, erfc, Faddeeva, and density of sum of
Gaussian and Student's t
Generation of Multivariate Data with Arbitrary Marginals
Neyman Smooth Tests of Normality for the Errors of ARMA Models
Compute Node Overlap and Segregation in Ecological Networks
Send Alerts to your Cellphone and Phillips Hue Lights
Send push notifications to your smartphone via pushover.net
(ACCOUNT REQUIRED!)
NOVEL Integration of the Sample and Thresholded (NOVELIST)
Correlation and Covariance Estimators
Nowcasting Analysis and Create Real-Time Data Basis
Nonparametric Kernel Smoothing Methods for Mixed Data Types
Non-Parametric Measures of Actigraphy Data
Multiple Comparisons and Simultaneous Confidence Intervals
Nonparametric Analysis of Longitudinal Data in Factorial
Experiments
Nonparametric Tests for Main Effects, Simple Effects and
Interaction Effect in a Factorial Design with Censored Data
Non-Parametric Bayesian Multiple Imputation for Categorical Data
Nonparametric Combination of Hypothesis Tests
Nonparametric Methods for Cognitive Diagnosis
Non Parametric Test for Detecting Changes in the Copula
Some Nonparametric CUSUM Tests for Change-Point Detection in
Possibly Multivariate Observations
Normalised prediction distribution errors for nonlinear
mixed-effect models
Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry
Data
Sample Size Calculation for the Proportional Hazards Mixture
Cure Model
Nonparametric Interaction Tests for Factorial Designs with
Repeated Measures
Plotting linkage and association results
Type-Specific Failure Rate and Hazard Rate on Competing Risks
Data
Nonparametric maximum likelihood estimation for random effect
models
tertiary probabilistic model in predictive microbiology for use
in food manufacture
Nonparametric Comparison of Multivariate Samples
Nonparametric Partially-Balanced Incomplete Block Design
Analysis
Vegetation Phenological Cycle and Anomaly Detection using Remote
Sensing Data
Nonparametric Estimation of Regression Models with
Factor-by-Curve Interactions
Nonparametric Robust Estimation and Inference Methods using
Local Polynomial Regression and Kernel Density Estimation
Neyman-Pearson (NP) Classification Algorithms and NP Receiver
Operating Characteristic (NP-ROC) Curves
Kernel-Based Nonparametric ROC Regression Modelling
Convenience Functions and Tests for Working With the Net
Promoter Score (NPS)
Nonparametric and Stochastic Efficiency and Productivity
Analysis
Nonparametric Smoothing for contaminated data using
Simulation-Extrapolation
Package for Nonparametric Statistical Methods using R
Generalization of Hewitt's Seasonality Test
NRI for Risk Prediction Models with Time to Event and Binary
Response Data
Post-normalization of total copy numbers
Simulation and Estimation of the Neyman-Scott Type Spatial
Cluster Models
Prepares and Writes Files to Submit to the National Student
Clearinghouse
Numerical Standard Errors Computation in R
Elitist Non-dominated Sorting Genetic Algorithm based on R
Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
Nonparametric and Semiparametric Mixture Estimation
NUtrient Cycling and COMpetition Model Undisturbed Open Bog
Ecosystems in a Temperate to Sub-Boreal Climate
Create a Kaplan-Meier Plot with Numbers at Risk
Numeric Routines for Optically Stimulated Luminescence Dating
Audioscrobbler data for "R in a Nutshell"
R functions for NetWorkSpaces and Sleigh
Driving Offences in New Zealand Between 2009 and 2016
General Purpose 'Oai-PMH' Services Client
Harvest Metadata Using OAI-PMH Version 2.0
Multiple Sclerosis Lesion Segmentation using Magnetic Resonance
Imaging (MRI)
Outright Tool for the Analysis of Spatial Inequalities and
Segregation
Oblique Random Forests from Recursive Linear Model Splits
An R package to assess agreement between observers
Objective Bayesian Model Discrimination in Follow-Up Designs
Sensitivity analysis for Observational studies
A Plotting Toolbox for 2D Oceanographic Data
Visualisation of Oceanographic Data and Model Output
Order Constrained Solutions in k-Means Clustering
Regression for Rank-Indexed Compositional Data
Open Document Databases (.odb) management
Connect to ODBC Compatible Databases (using the DBI Interface)
Odds Ratio Calculation for GAM(M)s & GLM(M)s
Support for odfWeave on the survey package
Observatory of Economic Complexity API Wrapper and Utility
Program
Manipulation of Microsoft Word and PowerPoint Documents
Estimation of Ordered Generalized Linear Models
OGA+HDIC+Trim and High-Dimensional Linear Regression Models
Ordered Homogeneity Pursuit Lasso for Group Variable Selection
Crosstab and Statistical Tests for OII MSc Stats Course
Survival analysis supplement to OpenIntro guide
Multivariate Methods Based on the Oja Median and Related
Concepts
OkCupid Profile Data for Introductory Statistics and Data
Science Courses
Retrieve Oklahoma Mesonet climatological data
Tools for Teaching and Learning OLS Regression
filter the molecular descriptors for QSAR
Perform Two-Way Orthogonal Partial Least Squares
Model and Solve Mixed Integer Linear Programs
A Solver for 'ompr' that Uses the R Optimization Infrastructure
('ROI')
Maximum likelihood tree models for oncogenesis
Planing, Monitoring and Evaluating Oncological Phase 2 Studies
Software for constructing genetic maps in experimental crosses:
full-sib, RILs, F2 and backcrosses
One Rule Machine Learning Classification Algorithm with
Enhancements
Efficient Authenticated Interaction with the O*NET API
One-Way Tests in Independent Groups Designs
Functions for Visualising Sets of Ontological Terms
Functions for Calculating Ontological Similarities
Class Unions, Matrix Operations, and Color Schemes for OOMPA
Opasnet Modelling Environment Utility Functions
Option Pricing and Estimation of Financial Models in R
Tools for the Analysis of Air Pollution Data
EBGM Scores for Mining Large Contingency Tables
Data Sets and Supplemental Functions from 'OpenIntro' Textbooks
Exploring Machine Learning Better, Together
Control number of OpenMP threads dynamically
Apache OpenNLP Jars and Basic English Language Models
Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
An Open Source Implementation of the 'ArcGIS' Toolbox 'STARS'
Tools for Creating and Analysing Air Trajectory Data
Utilities for Working with R's Operators
Routing Distribution, Broadcasts, Transmissions and Receptions
in an Opportunistic Network
Optimal Combinations of Diagnostic Tests Based on AUC
'surv' Object Confidence Bands Optimized by Area
Optimal Block Designs for Two-Colour cDNA Microarray Experiments
Estimation of optimal number of biomarkers for two-group
microarray based classifications at a given error tolerance
level for various classification rules
Determine Optimal Clustering Algorithm and Number of Clusters
Optimal Designs for Estimating the Slope Divided by the
Intercept
Tools to Support Optimization Possibly with Bounds and Masks
Near-Optimal and Balanced Group-Sequential Designs for Clinical
Trials with Continuous Outcomes
Estimation of value and hedging strategy of call and put
options
Likelihood Based Optimal Partitioning for Indicator Species
Analysis
Computing optimal cutpoints in diagnostic tests
Algorithms for D-, A-, and IV-Optimal Designs
A Replacement and Extension of the 'optim' Function
R Port of the 'Scilab' Optimsimplex Module
Model Based Diagnostics for Multivariate Cluster Analysis
A Replacement and Extension of the optim() Function
Optimal Two and Three Stage Designs for Single-Arm and Two-Arm
Randomized Controlled Trials with a Long-Term Binary Endpoint
Option Pricing with Efficient Simulation Algorithms
Optimum Contribution Selection and Population Genetics
Optimal Mixture Weights in Multiple Importance Sampling
Linear, Quadratic, and Rational Optimization
Optimal Partitioning of Similarity Relations
Optimization Toolbox for Solving Linear Systems
Optimal Row-Column Designs for Two-Colour cDNA Microarray
Experiments
OPUS Miner Algorithm for Filtered Top-k Association Discovery
Convenient Tools for Working with Oracle Databases
Computation of Graphlet Orbit Counts in Sparse Graphs
Several confidence intervals for the odds ratio
Order Restricted Clustering for Microarray Experiments
Estimate Procedure in Case of First Order Autocorrelation
Modelling comparison data with ordinal response
Likelihood-Based Continual Reassessment Method (CRM) Dose
Finding Designs
Separating Location and Dispersion in Ordinal Regression Models
Estimate parent distributions with data of several order
statistics
Ordered Lasso and Time-lag Sparse Regression
Efficiently Generates Random Order Statistic Variables
Least Squares, Logistic, and Cox-Regression with Ordered
Predictors
Ordinal Regression Analysis for Continuous Scales
Ordinal Forests: Prediction and Variable Ranking with Ordinal
Target Variables
Ordinal Regression for High-Dimensional Data
Biplot representations of ordinal variables
Compute least squares estimates of one bounded or two ordered
isotonic regression curves
Concurrent Generation of Ordinal and Normal Data with Given
Correlation Matrix and Marginal Distributions
Selection and/or Smoothing of Ordinal Predictors
An R Interface to the Onigmo Regular Expression Library
Connector to the Objective Revision Evaluation Service (ORES)
Analyse Text Files Created by Emacs' Org mode
Order-restricted Information Criterion-based Clustering
Algorithm
Fast Spatial Ancestry via Flexible Allele Frequency Surfaces
The package deals with Operations Research LOCational Analysis
models
Rigorous - NIfTI + ANALYZE + AFNI : Input / Output
Order Restricted Assessment Of Microarray Titration Experiments
Southern Ocean Frontal Distributions (Orsi)
Converting Odds Ratio to Relative Risk in Cohort Studies with
Partial Data Information
Dynamic Panel Models with Orthogonal Reparameterization of Fixed
Effects
Collection of functions for orthogonal and orthonormal
polynomials
Orthogonal Signal Deconvolution for Spectra Deconvolution in
GC-MS and GCxGC-MS Data
Design and analysis of observational studies
Import 'OpenStreetMap' Data as Simple Features or Spatial
Objects
Add a Scale Bar to 'OpenStreetMap' Plots
Interface Between R and the OpenStreetMap-Based Routing Service
OSRM
Optimal Trees Ensembles for Regression, Classification and Class
Membership Probability Estimation
Variable Selection for Optimal Treatment Decision
North Temperate Lakes - Microbial Observatory 16S Time Series
Data and Functions
Ornstein-Uhlenbeck Models for Phylogenetic Comparative
Hypotheses
Bayesian Reconstruction of Disease Outbreaks by Combining
Epidemiologic and Genomic Data
Basic Tools for the Analysis of Disease Outbreaks
Outlier Detection using quantile regression for Censored Data
Outlier Detection for Multi-replicated High-throughput Data
Functions for Solving Multiple-criteria Decision-making Problems
Analysis of Evolutionary Rates in an OU Framework
Estimates of Coefficient of Overlapping for Animal Activity
Patterns
Estimation of Overlapping in Empirical Distributions
Processing of Oxy-Bisulfite Microarray Data
Plot the Australian Coastline and States
Posterior Predictive Checks of Coalescent Models
Performance Attribution for Equity Portfolios
Summarize Daily Physical Activity from 'activPAL' Accelerometer
Data
Pabon Lasso Graphs and Comparing Situations of a Unit in Two
Different Times
Partition-Assisted Clustering and Multiple Alignments of
Networks
PAC-Bayesian Estimation and Prediction in Sparse Additive
Models
Track R Package Downloads from RStudio's CRAN Mirror
A few Useful Functions for Statisticians
A Dependency Management System for Projects and their R Package
Dependencies
Procrustes Application to Cophylogenetic Analysis
Testing for Partial Copulas and the Simplifying Assumption in
Vine Copulas
Quickly Get Datetime Data Ready for Analysis
Attributable Fraction Function for Censored Survival Data
Book Companion for Processing and Analyzing Financial Data with
R
Generative Mechanism Estimation in Temporal Complex Networks
An API Client for Wikimedia Traffic Data
The package can identify the dysregulated KEGG pathways based on
global influence from the internal effect of pathways and
crosstalk between pathways
Pathway Analysis Methods for Genomewide Association Data
Confidence intervals for the ratio of locations and for the
ratio of scales of two paired samples
Visualization using Eulerian tours and Hamiltonian
decompositions
Rasch Model Parameters by Pairwise Algorithm
Confidence Intervals for Two Sample Comparisons
Pairing Up Units and Vectors in Panel Data Setting
Multiple Indicator Cluster Survey (MICS) 2014 Child
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2014 Household
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2014 Household Listing
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2014 Women
Questionnaire Data for Punjab, Pakistan
Significance Tests for Palaeoenvironmental Reconstructions
Download and Process Data from the Paleobiology Database
Analysis of Charcoal Records from the Global Charcoal Database
Geometric Morphometric Tools for Paleobiology
Paleontological and Phylogenetic Analyses of Evolution
Fitting Point Process Models via the Palm Likelihood
Color Palettes, Colormaps, and Tools to Evaluate Them
Principal Axes Methods for Contingency Tables with Partition
Structures on Rows and Columns
Power Analysis for Random Effects in Mixed Models
Implementation of the Panel Data Approach Method for Program
Evaluation
Pam: prediction analysis for microarrays
Multiple Imputation for Multivariate Panel or Clustered Data
Benchmarking and Rescaling R2 using Noise Percentile Analysis
Preferential Attachment Based Common Neighbor Distribution
Derived Functional Associations
Estimation of Linear AR(1) Panel Data Models with
Cross-Sectional Heteroskedasticity and/or Correlation
Random Effects and/or Sample Selection Models for Panel Count
Data
A Semi-Parametric Test for Specifying Functional Form
View Medical Research Images using the Papaya JavaScript Library
A Toolbox for Writing Pretty Papers and Reports
Distance Recordings from a Paper Plane Folding/Flying Experiment
Parallel Distance Matrix Computation using Multiple Threads
Random Forest Classification with Parallel Computing
Automate parallelization of function calls by means of dynamic
code analysis
Unified Interface to Parallelization Back-Ends
Methods for combining independent subset Markov chain Monte
Carlo (MCMC) posterior samples to estimate a posterior density
given the full data set
A Parallel-Voting Algorithm for many Classifiers
Paralellised Versions of Constraint Based Causal Discovery
Algorithms
A Parallel-Voting Version of the Support-Vector-Machine
Algorithm
A Shiny GUI for some Parameter Estimation Examples
Helpers for Parameters in Black-Box Optimization, Tuning and
Machine Learning
Parametric Linkage and Other Pedigree Analysis in R
Horn's Test of Principal Components/Factors
Regularized estimation of partial correlation matrices
Parallel implementation of the "segment" function of package
"DNAcopy"
Conduct the Parent-Offspring Test Using Monomorphic SNP Markers
Computing, Fitting and Validating the PPS Distribution
Parallelized functions for palaeoecological and
palaeogeographical analysis
Portfolio Allocation and Risk Management Applications
Parallel Mutual Information estimation for Gene Network
reconstruction
Model-Based Clustering with Regularization Methods for
High-Dimensional Data
Recognize and Parse Dates in Various Formats, Including All ISO
8601 Formats
Parse Thermo MSF Files and Estimate Protein Abundances
Partitioning Using Deletion, Substitution, and Addition Moves
Implements Measures for the Comparison of Two Partitions
Compute a distance metric between two partitions of a set
Periodic Autoregressive Time Series Models
Summarize Daily Physical Activity from 'SenseWear' Accelerometer
Data
Prediction and Stability Selection of Tuning Parameters
Travel Smoothly Between Country Name and Code Formats
Package for Analysis of Space-Time Ecological Series
Phylogenetic Assembly with Soft Taxonomic Inferences
Probability and Statistics with R, Second Edition
Communication Between Editor and Viewer for Literate Programs
A Tool for Identification of Differentially Expressed Pathways
using Multi-Statistic Comparison
Classification using biological pathways as prior knowledge
Basic functions for drawing path diagrams
Compute Deviation and Correspondence Between Spatial Paths
Pathmox Approach of Segmentation Trees in Partial Least Squares
Path Modeling
Backwards Variable Selection for Paths using M Plus
Feature Extraction from Female Brown Anole Lizard Dorsal
Patterns
Class-Focused Pattern Metric Comparisons using Simulation
Quantification of Color Pattern Variation
Versatile Pie Chart using Patterns, Colors, and Images
Bayesian Experimental Design for Systems Biology
Perceptual Analysis, Visualization and Organization of Spectral
Color Data in R
Penalized Adaptive Weighted Least Squares Regression
Adding Progress Bar to '*apply' Functions
Protracted Birth-Death Model of Diversification
Programming with Big Data -- Base Wrappers for Distributed
Matrices
Programming with Big Data -- Demonstrations and Examples Using
'pbdR' Packages
Programming with Big Data -- Interface to MPI
Programming with Big Data -- Interface to Parallel Unidata
NetCDF4 Format Data Files
Programming with Big Data --- MPI Profiling Tools
Programming with Big Data -- Remote Procedure Call
Programming with Big Data -- Scalable Linear Algebra Packages
Programming with Big Data -- Interface to ZeroMQ
Partially Balanced Incomplete Block Designs
A Set of Datasets Used in My Classes or in the Book 'Modele
Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych'
Parametric Bootstrap and Kenward Roger Based Methods for Mixed
Model Comparison
Tracking the Progress of Mc*pply with Progress Bar
Permutation Based Non-Parametric Analysis of CRISPR Screen Data
Mapping Fisheries Data and Spatial Analysis Tools
GUI Tools Made Easy: Interact with Models and Explore Data
Segmenting Multiple Time Series by Contemporaneous Linear
Transformation
Create 2D Principal Component Plots with Bootstrapping
Fast Principal Component Analysis for Outlier Detection
Tools for Principal Component Analysis-Based Data Structure
Comparisons
Methods for Graphical Models and Causal Inference
Parallel Analysis for Ordinal and Numeric Data using Polychoric
and Pearson Correlations with S3 Classes
Dynamic Principal Components for Periodically Correlated
Functional Time Series
Semiparametric regression analysis of panel count data using
monotone splines
Model Fitting to Progressively Censored Mixture Data
Principal Component of Explained Variance
Computation of Ancestry Scores with Mixed Families and Unrelated
Individuals
Preconditioned Conjugate Gradient Algorithm for solving Ax=b
Piecewise Constant Hazards Models for Censored and Truncated
Data
Implementation of POSIXct work-alike for 365 and 360 day
calendars
IRT Models for Polytomous and Continuous Item Responses
Partial Correlation Coefficient with Information Theory
Principal Coordinates of Phylogenetic Structure
Implementing the Coalescent Approach to PCR Simulation Developed
by Weiss and Von Haeseler (NAR, 1997)
Calculate the probability of correct selection (PCS)
Panel-Corrected Standard Error Estimation in R
Parallel Constraint Satisfaction Networks in R
Cluster analysis via nonparametric density estimation
Fetch Economic and Financial Time Series Data from Public
Sources
Text Extraction, Rendering and Converting of PDF Documents
Proximal/distal modeling framework for Pavlovian conditioning
phenomena
Panel Dynamic OLS Estimation of Cointegrating Vectors
Pattern Discovery in PDB Structures of Metalloproteins
PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher
Approximations
Threshold Model and Unit Root Tests in Panel Data
Positive definite sparse covariance estimators
An Analysis Toolbox for Hermitian Positive Definite Matrices
Two and Three Dimensional Kolmogorov-Smirnov Two-Sample Tests
Periodogram Peaks in Correlated Time Series
Compute the Annotation Error of Peak Calls
Peak Picking Methods Inspired by Biological Data
Monitor the Total and Peak RAM Used by an Expression or Function
Dynamic Programming Algorithm for Peak Detection in ChIP-Seq
Data
Joint Peak Detection in Several ChIP-Seq Samples
Optimal Segmentation Subject to Up-Down Constraints
Package for Periodic Autoregression Analysis
Maximum Likelihood Inference for the Pearson VII Distribution
with Shape Parameter 3/2
Independent component analysis using score functions from the
Pearson system
Prediction Error Curves for Risk Prediction Models in Survival
Analysis
Functions to facilitate power and sensitivity analyses for
genetic studies of natural populations
An implementation for association analysis with CNV data
Luck-Corrected Peer Performance Analysis in R
Population and Evolutionary Genetics Analysis System
Population Proportion Estimation using Group Testing
Geophysical Inverse Theory and Optimization
A Penalized EM algorithm incorporating missing-data mechanism
Portable Emissions (and Other Mobile) Measurement System
Utilities
L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation
in GLMs and in the Cox Model
Penalized Classification using Fisher's Linear Discriminant
Feature Selection SVM using penalty functions
Flexible Copula Density Estimation with Penalized Hierarchical
B-Splines
Estimating Non-Simplified Vine Copulas Using Penalized Splines
Density Estimation with a Penalized Mixture Approach
Flexible Pair-Copula Estimation in D-Vines using Bivariate
Penalized Splines
Estimating Regularized Multi-state Models Using L1 Penalties
Flexible R-Vines Estimation Using Bivariate Penalized Splines
Simulation of high-dimensional data and parallelized repeated
penalized regression
Parallelised Estimation of Prediction Error
Insilico peptide mutation, digestion and homologous comparison
Evaluation of Diversity in Nucleotide Libraries
Calculate Indices and Theoretical Physicochemical Properties of
Protein Sequences
Using Percolation and Conductance to Find Information Flow
Certainty in a Direct Network
Implementing Double Bootstrap Linear Regression Confidence
Intervals Using the 'perc-cal' Method
Estimate Percentiles from an Ordered Categorical Variable
PerfMeas: Performance Measures for ranking and classification
tasks
Econometric tools for performance and risk analysis
An Infra-Structure for Performance Estimation of Predictive
Models
Permutational Algorithm to Simulate Survival Data
Permutation Tests for General Dependent Truncation
Permutational Group Sequential Test for Time-to-Event Data
Permutation Based Gene Expression Pathway Analysis
A Permutation Based Test for Biomarker Discovery in Microbiome
Data
Functions for Generating Restricted Permutations of Data
Resampling-based prediction error estimation for regression
models
Automated Persomics Array Image Extraction
Estimation and Validation Methods for Subgroup Identification
and Personalized Medicine
Pictographic Representation of Treatment Effects
Permutation of Species During Turnover Events
Analysis of single serving and composite pesticide residue
measurements
Simulation and Reconstruction of PET Images
Building, Visualizing, Exporting and Replaying Petri Nets
Reproducible Retrieval of Pew Research Center Datasets
Phylogenetics for the Environmental Sciences
Estimates False Discovery Proportion Under Arbitrary Covariance
Dependence
Penalized Generalized Estimating Equations in High-Dimension
Penalized Generalized Estimating Equations for Bivariate Mixed
Outcomes
Generalized Least Square in comparative Phylogenetics
Nested Resolvable Designs and their Associated Uniform Designs
Estimating Multiple Gaussian Graphical Models (GGM) in Penalized
Gaussian Mixture Models (GMM)
Build Dependency Graphs using Projection
Discover Probable Duplicates in Plant Genetic Resources
Collections
Phase II Clinical Trial Design Using Bayesian Methods
Phase II Clinical Trial Design for Multinomial Endpoints
Gene Set Pareto Heterogeneity Analysis of Time-Course Gene
Expression Data
Pharmacometric Power calculations for mixed study designs
Repeated Measurement Design for Phase I Clinical Trial
Phase Plane Analysis of One and Two Dimensional Autonomous ODE
Systems
Auxiliary Functions for Phenological Data Analysis
Auxiliary functions for phenological data processing, modelling
and result handling
Auxiliary functions for phenological data analysis
High-Throughput Generation of Genetic Markers and Maps from
Molecular Phenotypes for Crosses Between Inbred Strains
Tools to Manage a Parametric Function that Describes Phenology
Process Digital Images of a Vegetation Cover
Flexible Phenotype Simulation from Different Genetic and Noise
Models
Evaluation of the Proportional Hazards Assumption with a
Standardized Score Process
Similarity and Distance Quantification Between Probability
Functions
Proportional Hazards Mixed-effects Model (PHMM)
Convert Letters to Numbers and Back as on a Telephone Keypad
Tools for Phonetic and Acoustic Analyses
Read Spectral and Logged Data from Foreign Files
Spectral Data of Light Emission by Lamps
Plant Photobiology Related Functions and Data
Waveband Definitions for UV, VIS, and IR Radiation
R Interface to Geochemical Modeling Software
Panel Data Analysis with Heterogeneous Time Trends
Run Phoenix NLME and Perform Post-Processing
Analysis of Outbreaks with Sequence Data
An Extension (for Package 'SigTree') of Some of the Classes in
Package 'phylobase'
Rapid Calculation of Phylogenetic Information Content
Base Package for Phylogenetic Structures and Comparative Data
Interactive Phylogenetic Trees Using the 'Phylocanvas'
JavaScript Library
Integrating Phylogenetics and Climatic Niche Modeling
Phylogenetic Comparative Methods for High-Dimensional Traits
Automatic Shift Detection using a Phylogenetic EM
Functions for Phylogenetically Based Statistical Analyses
Modelling Competitive Exclusion and Limited Dispersal in a
Statistical Phylogeographic Framework
Fast and Exact Algorithms for Computing Phylogenetic
Biodiversity Measures
Estimating Statistical Errors of Phylogenetic Metrics
Exploring the Phylogenetic Signal in Continuous Traits
Flexible Simulations of Biological Sequence Evolution
Calculating Topological Properties of Phylogenies
Implements the Phylogenetic Regression of Grafen (1989)
Marks Periods of 'Bedrest' in Actigraph Accelerometer Data
Process Physical Activity Accelerometer Data
Calculate Physiological Characteristics of Adults and Children
A Fast, Flexible Tool for Sorting Phylogenetic Trees
Phylogenetic Tools for Comparative Biology (and Other Things)
Estimating the Proportion of True Null Hypotheses for FDR
R tools for integrating phylogenies and ecology
Pathwise Calibrated Sparse Shooting Algorithm
Potential Impact Fraction and Population Attributable Fraction
for Cross-Sectional Data
Self Contained Gene Set Analysis for Gene- And
Pathway-Environment Interaction Analysis
Fast and Stable Estimation of the Probability of Informed
Trading (PIN)
Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for
17 Samples of 'P. Infestans" and 1 'P. Mirabilis'
Dual-Agent Dose Escalation for Phase I Trials using the PIPE
Design
Permutation p-Value Estimation for Gene Set Tests
Tools for Harnessing 'MLBAM' 'Gameday' Data and Visualizing
'pitchfx'
A Fast, Easy-to-Use Tool for Manipulating Tables in Databases
and a Wrapper of MADlib
Tables so Beautifully Fine-Tuned You Will Believe It's Magic
Copy Local R Packages to Another Environment
A Consistent and Intuitive Platform to Explore the Dependencies
of Packages on the Comprehensive R Archive Network Like
Repositories
Create Simple Packages Which Do not Upset R Package Checks
Model diagnostics for population pharmacokinetic models
Public Key Infrastucture for R Based on the X.509 Standard
Least-Squares Estimator under k-Monotony Constraint for Discrete
Functions
Pharmacokinetic and Pharmacodynamic Data Management Functions
A reporting pipeline for checking population pharmacokinetic
model assumption
A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated
Data
Functions for Calculating Dodge Romig, MIL STD 105E and MIL STD
414 Acceptance Sampling Plan
Modelling and Analysis of Leaf Gas Exchange Data
Partially Linear Additive Quantile Regression
Visualization of Plasmid Profile Results
Read, Tidy, and Display Data from Microtiter Plates
Dynamic Updating Methods for Player Ratings Estimation
Interface to the 'Pleiades' 'Archeological' Database
Pleiotropy Test for Multiple Traits on a Genetic Marker
A GUI to View, Design and Export Various Graphs of Data
IRT Separate Calibration Linking Methods
Multiplicity control using Pooled LIS statistic
Additive partially linear models for differential gene
expression analysis
Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for
Partial Rankings/Orderings
Estimate (Generalized) Linear Mixed Models with Factor
Structures
Polytomous logit-normit (graded logistic) model estimation
Multivariate Ordered Probit Model via Pairwise Likelihood
Plotting Multi-Dimensional Data - Using 'rgl'
Various Functions to Facilitate Visualization of Data and
Analysis
Plot Spatial or Spatio-Temporal Data Over Google Maps
Visualization of Spatial and Spatio-Temporal Objects in Google
Earth
'ggplot2' Version of "I'm Feeling Lucky!"
Create Interactive Web Graphics via 'plotly.js'
Plot Marginal Effects from Linear Models
Plot Principal Component Histograms Around a Scatter Plot
Useful Networking Tools for Project Management
Creates an envelope that surrounds a set of points plotted in a
two dimensional space
Generate Useful ROC Curve Charts for Print and Interactive Use
Making Visual Exploratory Data Analysis Easier
Graphing Nonlinear Relations Among Latent Variables from
Structural Equation Mixture Models
Spider Plots, ROC Curves, Pie Charts and More for Use in Other
Plots
Log Linear by Linear Association models and Rasch family models
by pseudolikelihood estimation
Statistical inference in partial linear regression models
Partial Least Squares and Principal Component Regression
Partial Least Squares (PLS) Data Analysis Methods
Degrees of Freedom and Statistical Inference for Partial Least
Squares Regression
Tools for Partial Least Squares Path Modeling (PLS-PM)
Sensitivity Indexes from Polynomial Chaos Expansions and PLS
Partial Least Squares Regression for Beta Regression Models
Partial Least Squares Regression for Cox Models and Related
Techniques
Partial Least Squares Regression for Generalized Linear Models
Variable Selection in Partial Least Squares
Simulate Probabilistic Long-Term Effects in Models with Temporal
Dependence
Tools for Splitting, Applying and Combining Data
Parallel Model-Based Clustering using
Expectation-Gathering-Maximization Algorithm for Finite Mixture
Gaussian Model
Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Minimal Working Examples for Particle Metropolis-Hastings
Transforms Input Data from a PMML Perspective
Probit-Normal Marginalized Transition Random Effects Models
Dose Finding in Drug Combination Phase I Trials Using PO-CRM
Principal Orthogonal ComplEment Thresholding (POET) Method
Bayesian Variable Selection for a Poisson-Logistic Model
PogromcyDanych / DataCrunchers is the Masive Online Open Course
that Brings R and Statistics to the People
Classification and clustering of sequencing data based on a
Poisson model
Poisson lognormal and bivariate Poisson lognormal distribution
Validation of Local and Remote Data Tables
Analyzing Pointer Years and Components of Resilience
Input/Output Functionality for "PO" and "POT" Message
Translation Files
Data Generation with Poisson, Binary and Continuous Components
A Faster Implementation of the Poisson-Binomial Distribution
Data Generation with Poisson, Binary and Ordinal Components
Generation of Up to Four Different Types of Variables
Data Generation with Poisson, Binary, Ordinal and Normal
Components
Confidence Intervals with Poisson Double Sampling
Simultaneous Generation of Count and Continuous Data
Simultaneous Generation of Multivariate Data with Poisson and
Normal Marginals
Simulating Homogenous & Non-Homogenous Poisson Processes
Fit high dimensional mixtures of Poisson GLMs
Significance analysis of sequencing data based on a Poisson log
linear model
Polytomous variable Latent Class Analysis
Datasets and Functions Featured in Pollock and Edwards R
Companion to Essential of Political Analysis
Interface to the Poloniex Cryptocurrency Trading API
Implementation of the Polya-Aeppli distribution
Sensitivity Indexes Calculated from Polynomial Chaos Expansions
Bayesian Population Genomics in Autopolyploids
A Collection of Functions to Implement a Class for Univariate
Polynomial Manipulations
Paternity Exclusion in Autopolyploid Species
The Pharmacokinetics (PK) of Multi-Component Drugs Using a
Metabolomics Approach
Helper Functions for Orthogonal Polynomials
Tools for Polyploid Microsatellite Analysis
Simulate and test marker dosage for dominant markers in
autopolyploids
Bayesian mixture models for marker dosage in autopolyploids
Bootstrapped Basis Regression with Oracle Model Selection
Adaptive Association Tests for Multiple Phenotypes using
Proportional Odds Model (POM-aSPU)
Pattern Oriented Modelling Information Criterion
Statistical Inference for Partially Observed Markov Processes
A Flexible Syntax for Population Dynamic Modelling
Construction and Analysis of Matrix Population Models
Demographic Modelling Using Projection Matrices
Population (and Individual) Optimal Experimental Design
Functions for Epidemiological Analysis using Population Data
Useful functions for (batch) file conversion and data resampling
in microsatellite datasets
An Efficient Swiss Army Knife for Population Genomic Analyses
A Simple Framework to Analyse Population and Landscape Genetic
Data
For interval estimation of mean of selected populations
Tools for Simplifying the Population and Querying of SQLite
Databases
Genetic Analysis of Populations with Mixed Reproduction
popRange: A spatially and temporally explicit forward genetic
simulator
Reconstruct Human Populations of the Recent Past
Functions for Constructing and Evaluating Self-Organizing Maps
Estimate Smooth and Linear Trends from Population Count Survey
Data
Genomic Breeding Tools: Genetic Variance Prediction and
Cross-Validation
Portmanteau Tests for Univariate and Multivariate Time Series
Models
Portfolio Analysis, Including Numerical Methods for Optimization
of Portfolios
High Frequency Price Estimators by PortfolioEffect
High Frequency Portfolio Analytics by PortfolioEffect
Framework for simulating equity portfolio strategies
Valid Post-Selection Inference for Linear LS Regression
Tools for Interacting with 'PostgreSQL' / 'PostGIS' Databases
Parses Web Pages using Postlight Mercury
Generalized Pareto Distribution and Peaks Over Threshold
Markov Chain Monte Carlo for Potts Models
The Phylogenetic Ornstein-Uhlenbeck Mixed Model
Computation of Power and Level Tables for Hypothesis Tests
Power and Sample-Size Distribution of 2-Stage Bioequivalence
Studies
Power Analysis Tool for Joint Testing Hazards with Competing
Risks Data
Power and Sample Size Calculation for eQTL Analysis
Power Calculations for GxE and GxG Interactions for GWAS
Power Calculations for Longitudinal Multilevel Models
Power/Sample Size Calculation for Mediation Analysis
Power analyses for the affected sib pair and the TDT design
Power and Sample Size Calculation for Survival Analysis of
Epidemiological Studies
Power and Sample Size Based on Two One-Sided t-Tests (TOST) for
(Bio)Equivalence Studies
Power Analysis Tools for Multilevel Randomized Experiments
Probability Plot Correlation Coefficient Test
Partial and Semi-Partial (Part) Correlation
Predict Protein-Protein Interactions Based on Functional and
Topological Similarities
Point Process Models with LASSO Penalties
Projection Pursuit Classification Tree Visualization
web tool for estimating under-five deaths caused by poor-quality
antimalarials in sub-Saharan Africa
Functions for Clustering of Presence-Absence, Abundance and
Multilocus Genetic Data
Tools for Designing and Weighting Survey Samples
Provides a pragma / directive / keyword syntax for R
Prais-Winsten Estimation Procedure for AR(1) Serial Correlation
Kvantitatiivsete meetodite praktikumi asjad / Functions used in
the course "Quantitative methods in behavioural sciences"
(SHPH.00.004), University of Tartu
Testing Workbench for Precision-Recall Curves
Precipitation Intensity, Concentration and Anomaly Analysis
Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Tools for Detecting Predatory Publishers and Journals
Prediction Interval Functions for Assessing Replication Study
Results
Prediction Intervals for Three Basic Statistical Models
Calculate Predicted Means for Linear Models
Test Bench for Comparison of Data Prediction Models
Classification rule based on Bayesian mixture models with
feature selection bias corrected
R Package for Pairwise Preference Elicitation
2-Stage Clinical Trial Design and Analysis
Utilities to Fit Paired Comparison Models for Preferences
Pre-Knitting Processing and Post HTML-Rendering Processing
Dirichlet Process Bayesian Clustering, Profile Regression
Preparing Experimental Data for Statistical Analysis
Basic Functions for Pre-Processing Microarrays
Lightweight Data Quality Simulation for Classification
Tools for Visualization of Interdependent Data Quality Issues
R Markdown Templates to Preregister Scientific Studies
Predicting the Number of Species in a Random Sample
Probability-Scale Residuals and Residual Correlations
Diagnostics to Assess the Effects of Text Preprocessing
Decisions
Creating Pretty Documents from R Markdown
Scale Bar, North Arrow, and Pretty Margins in R
Pretty, Human Readable Formatting of Quantities
Geostatistical Modelling of Spatially Referenced Prevalence Data
Estimating Regional Trends of a Prevalence from a DHS
Permutation Significance for Random Forests
Use Prime Factorization for Computations
Functions and data for A Primer of Ecology with R
Visually Assessing the Specificity and Informativeness of Primer
Pairs
Eigenvalues and Singular Values and Vectors from Large Matrices
Fits a Principal Curve in Arbitrary Dimension
Finding and plotting simple basis vectors for multivariate data
Automatically Print R Objects to Appropriate Formats According
to the 'knitr' Output Format
Analyzing Multiple Omics Data with an Offset Approach
Access Data from the Oregon State Prism Climate Project
Protocol Inspection and State Machine Analysis
Plot Flow Charts According to the "PRISMA" Statement
Downloads and Parses World Prison Brief Data
Differentially Private Regularized Logistic Regression
Estimation of Prevalence Ratios using Logistic Models
Point-Process Response Model for Optogenetics
Statistical Tools for Probing Moderation Effects
Probabilistic weather forecast using the GOP method
Probit with Spatial Dependence, SAR and SEM Models
probsvm: Class probability estimation for Support Vector
Machines
Inference for the Stress-Strength Model R = P(Y<X)
Extraction of Bands from MODIS Calibrated Radiances MOD02 NRT
Product Density Estimation for ICA using tilted Gaussian density
estimates
Product-Limit Estimation for Censored Event History Analysis
Indices of Productivity Using Data Envelopment Analysis (DEA)
The package can prioritize candidate disease metabolites based
on global functional relationships between metabolites in the
context of metabolic pathways
Profile Likelihood for a Parameter in Commonly Used Statistical
Models
Tools for profiling inference functions for various model
classes
Profile Analysis of Multivariate Data in R
Fit Projected 2D Profiles to Galaxy Images
An alternative display for profiling information
An Alternative Display Profiling Data as Tree Structure
Interactive Visualizations for Profiling R Code
Finding the Optimal Cluster Number Using Progeny Clustering
support package for "Programming Graphical User Interfaces in R"
Prognostic ROC curves for evaluating the predictive capacity of
a binary test
A simple interface to the PROJ.4 cartographic projections
library
Automates the Creation of New Statistical Analysis Projects
Calculates and Analyzes the Proliferative Index
Biological Network Construction, Visualization and Analyses
Various confidence interval methods for proportions
Analyzing Combination of Proportions and Relative Risk
Parse Java Properties Files for R Service Bus Applications
Inference on Single Binomial Proportion and Bayesian
Computations
Feature (gene) selection based on the Proportional Overlapping
Scores
Calculating Proportionality Between Vectors of Compositional
Data
Propensity score methods for assigning treatment in randomized
trials
Patient Reported Outcomes Regression Analysis
Functions to Score Commonly-Used Patient-Reported Outcome (PRO)
Measures and Other Psychometric Instruments
Tools to Score Patient-Reported Outcome (PRO) and Other
Psychometric Measures
Miscellaneous functions for processing and sample selection of
vis-NIR diffuse reflectance data
Generates Various Protein Descriptors for Machine Learning
Algorithms
Optimization of a multi-stage proteomic study
Statistical Analysis of High Throughput Proteomics Data
Protein (identification and) quantification based on peptide
evidence
Fast and Simple Object Serialization to Protocol Buffers
Inference on Prototypes from Clusters of Features
Generating Various Numerical Representation Schemes for Protein
Sequences
Manipulate and Play 'ProTracker' Modules
Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics
Marcel Proust's Text from 'A La Recherche Du Temps Perdu'
Statistical Toolbox for Sedimentary Provenance Analysis
Minimal Protein Set Explaining Peptide Spectrum Matches
Precision-Recall and ROC Curves for Weighted and Unweighted Data
Test of Periodicity using Response Surface Regression
Datasets and Functions Used in the Book 'Przewodnik po Pakiecie
R'
Bootstrapping for Propensity Score Analysis
Penalized Parametric and Semiparametric Bayesian Survival Models
with Shrinkage and Grouping Priors
Analysis of Parent-Specific DNA Copy Numbers
Standardizing Physiological Composite Risk Endpoints
Adaptive, Sine-Multitaper Power Spectral Density Estimation
Download Regularly Maintained Political Science Data Sets
Parameter Space Exploration with Latin Hypercubes
Methods for Evaluating Principal Surrogates of Treatment
Response
Forecasting of Univariate Time Series Using the Pattern
Sequence-Based Forecasting (PSF) Algorithm
Projected Spatial Gaussian Process (psgp) methods
Build Panel Data Sets from PSID Raw Data
Several Local False Discovery Rate Estimators
Piecewise Exponential Model for Time to Progression and Time
from Progression to Death
Probabilistic Suffix Trees and Variable Length Markov Chains
Specification Tests for Parametric Propensity Score Models
Panel Smooth Transition Regression Modelling
Simulations of grouped responses relative to baseline
Procedures for Psychological, Psychometric, and Personality
Research
Recursive Partitioning Based on Psychometric Models
Functions for analyzing psychophysical data in R
Produce Well-Formatted Tables for Psychological Research
Stemming Algorithms for the Portuguese Language
Quality Report Generation for MaxQuant Results
Bayesian Variable Selection with Hierarchical Priors
Performs simulation study to look for publication bias, using a
technique described by Ioannidis and Trikalinos; Clin Trials.
2007;4(3):245-53
Printing Results of Statistical Computing in a Publishable Way
Parallel Utilities for Lambda Selection along a Regularization
Path
Parallel Ultra-Rapid p-Value Computation for Linear Regression
Interaction Terms
Bayesian Estimation of Tumor Purity and Clonality
Tools at the Intersection of 'purrr' and 'dplyr'
Population Viability Analysis with Data Cloning
Calculation and Application of p-Variation
Hierarchical Clustering with P-Values via Multiscale Bootstrap
Resampling
An R package to interact with the Project Vote Smart API for
scientific research
Time Series Regression Using the Power Weighted Densities (PWD)
Approach
Design and Monitoring of Survival Trials Accounting for Complex
Situations
Utilities for Working with Air Quality Monitoring Data
Power and Sample Size Analysis for One-way and Two-way ANOVA
Models
Statistical Power Simulation for Testing the Rasch Model
Penn World Table (Versions 5.6, 6.x, 7.x)
Heuristics for the Quadratic Assignment Problem (QAP)
Tests for Type I Error in Qualitative Comparative Analysis (QCA)
Professional Functionality for Performing and Evaluating
Qualitative Comparative Analysis
Fast and Easy Quality Control of EWAS Results Files
Quality Control of Genome Wide Association Study results
Robust Estimation of Gaussian Mixture Models
Sure Independence Screening via Quantile Correlation and
Composite Quantile Correlation
Bridging the Gap Between Qualitative Data and Quantitative
Analysis
Dictionaries and Word Lists for the 'qdap' Package
Regular Expression Removal, Extraction, and Replacement Tools
Fitting a Quadrilateral Dissimilarity Model to Same-Different
Judgments
Quantitative Fatty Acid Signature Analysis
Quantitative Fatty Acid Signature Analysis in R
Pricing of Vanilla and Exotic Option Contracts
Smooth Additive Quantile Regression Models
Estimate Quantitative Genetics Parameters from Generalised
Linear Mixed Models
Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
Tools for Quantitative Genetics Data Analyses
Estimate the Coefficients for Non-Convex Penalized Quantile
Regression Model by using QICD Algorithm
Processing Data for Quantitative Language Comparison (QLC)
Utility Sparse Matrix Functions for Quantitative Language
Comparison
Visualization for Quantitative Language Comparison (QLC)
Statistical Transformations for Post-Processing Climate Model
Output
Analysis of Subjective Perspectives Using Q Methodology
Differential RNA Methylation Analysis for Count-Based
Small-Sample Sequencing Data with a Quad-Negative Binomial
Model
Analysis of Health-Related Quality of Life in Oncology
Model Validation using Quantile Spectral Analysis and Parametric
Bootstrap
Modelling and analysis of real-time PCR data
Quasi-Potential Analysis for Stochastic Differential Equations
Permutation Based QQ Plot and Inflation Factor Estimation
Quantile-Quantile Plot Extensions for 'ggplot2'
Self Calibrating Quantile-Quantile Plots for Visual Testing
A 'Shiny' Gadget for Interactive 'QRA' Visualizations
Tools that Create D3 JavaScript Force Directed Graph from R
A Novel Quantile Regression Approach for eQTL Discovery
Quantile Regression in Varying-Coefficient Models
Quick Response Code (QR Code) / Matrix Barcode Creator
Simultaneous simulation of Q and R mode factor analyses with
Spatial data
Joint Estimation in Linear Quantile Regression
Quantile Regression for Linear Mixed-Effects Models
Provides R-Language Code to Examine Quantitative Risk Management
Concepts
Data Sets for Quantitative Risk Management Practice
Quantile Regression for Nonlinear Mixed-Effects Models
SVM Quantile Regression with the Pinball Loss
Quantitative Structure Activity Relationship (QSAR) Data Sets
Densitometric Analysis of Thin-Layer Chromatography Plates
Interactive Graphics for QTL Experiments
Tools for Mapping Multiple Complex Traits
Tools for Mapping of Quantitative Traits of Genetically Related
Individuals and Calculating Identity Coefficients from
Pedigrees
QuACN: Quantitative Analysis of Complex Networks
Exact permutation moments of quadratic form statistics
Functions to solve Quadratic Programming Problems
Quadratic Programming with Absolute Value Constraints
Sparsity by Worst-Case Quadratic Penalties
Causal Inference with Qualitative and Ordinal Information on
Outcomes
Automatic Generation of Qualitative Color Palettes
Download Qualtrics Survey Data Directly into R
Implements Indices of Qualitative Variation Proposed by Wilcox
(1973)
Streamline Descriptive Analysis of Quantitative Data Matrices
Quantitative chemical analysis: calibration and evaluation of
results
Quantification of Qualitative Survey Data
Estimation of Conditional Quantiles using Optimal Quantization
Algorithms for Quantile- And Mean-Optimal Treatment Regimes
Quantile-Based Spectral Analysis of Time Series
Clustering Mutations using High Throughput Sequencing (HTS) Data
Interaction Prediction Between Groundwater and Quarry Extension
Using Discrete Choice Models and Artificial Neural Networks
Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood
Functions to Make Surveys Processing Easier
Analysis of Queueing Networks and Models
Calculation of Homology of Quandles, Racks, Biquandles and
Biracks
Regularized sparse inverse covariance matrix estimation
A System of Plotting Optimized for Speed and Modularity
Fits Psychometric Functions for Multiple Groups
Build Regression Models Quickly and Display the Results Using
'ggplot2'
Summary charts of micro satellite profiles for a set of
biological samples
A Way of Writing Functions that Quote their Arguments
Variables Selection for Clustering and Classification
Quasi Variances for Factor Effects in Statistical Models
Generalized Eigenvalues and QZ Decomposition
Estimation of R0 and Real-Time Reproduction Number from
Epidemics
Compressive Sampling: Sparse Signal Recovery Utilities
Estimate Structured Additive Regression Models with 'BayesX'
Bivariate (Two-Dimensional) Confidence Region and Frequency
Distribution
Multiple Peak Alignment for 2D Gas Chromatography Mass
Spectrometry Metabolomics Analysis
Converting R CRAN outputs into Google Earth
Computes R Squared for Mixed (Multilevel) Models
Simple R Interface to Microsoft PowerPoint using rcom or
RDCOMClient
A GTK GUI for fitting and comparing GLM and GLMM in R
r2stl, R package for visualizing data using a 3D printer
Goodness-of-Fit Tests for Capture-Recapture Models
Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS'
Racing methods for the selection of the best
Normalization and Study of Rank Abundance Distributions
Basics Menu for Radiant: Business Analytics using R and Shiny
Data Menu for Radiant: Business Analytics using R and Shiny
Design Menu for Radiant: Business Analytics using R and Shiny
Model Menu for Radiant: Business Analytics using R and Shiny
Multivariate Menu for Radiant: Business Analytics using R and
Shiny
Tools for plotting skew-T diagrams and wind profiles
Inverse-Regression Estimation of Radioactive Doses
Radon and Soil Gas Transport in 2D Porous Medium
Project Multidimensional Data in 2D Space
Convenience Functions for Routine Data Exploration
Ridge Estimation of Precision Matrices from High-Dimensional
Data
Ridge Estimation of Vector Auto-Regressive (VAR) Processes
Pricing Equity Derivatives with Extensions of Black-Scholes
Data Fusion Filters for Attitude Heading Reference System (AHRS)
with Several Variants of the Kalman Filter and the Mahoney and
Madgwick Filters
Rainbow Plots, Bagplots and Boxplots for Functional Data
Obtain and Analyze Rainfall Data from the Climate Prediction
Center
Rainfall Frequency (Design Storm) Estimates from the US National
Weather Service
Easy Spatial Microsimulation (Raking) in R
Retrieves Altmerics Data for Any Published Paper from
'Altmetric.com'
An Interface to the AMIDST Toolbox for Data Stream Processing
Regularized Generalized Linear Models with Interaction Effects
Structural Equation Modeling Using the Reticular Action Model
(RAM) Notation
Bayesian Geostatistical Modeling with RAMPS
Reinforced Angle-Based Multicategory Support Vector Machines
Random number generator based on AES cipher
Efficient Numerical Algorithm for Exact Inference in Meta
Analysis
Package Provides Access to Fake User Data
Simulation and Analysis of Random Fields
Utilities for the Simulation and Analysis of Random Fields
Breiman and Cutler's Random Forests for Classification and
Regression
Distributed 'randomForest' for Big Data using 'ddR' API
Explaining and Visualizing Random Forests in Terms of Variable
Importance
Random Forests for Survival, Regression, and Classification
(RF-SRC)
Create a Random List for Crossover Studies
Easy to Use Tools for Common Forms of Random Assignment and
Sampling
Function for Generating Random Names and a Dataset
A Parallel Analysis with Polychoric Correlation Matrices
Random Uniform Forests for Classification, Regression and
Unsupervised Learning
Toolbox for Pseudo and Quasi Random Number Generation and RNG
Tests
Occurrence Filtering, Geographic and Taxonomic Standardization
and Generation of Species Range Polygons
A Platform for the Study of Macro-Ecology of Life History Traits
Mid-Domain Effect and Species Richness Patterns
Model-Based Clustering for Multivariate Partial Ranking Data
Rank-Based Tests for General Factorial Designs
The Ranking Project: Visualizations for Comparing Populations
Ranking Responses in a Single Response Question or a Multiple
Response Question
Ranking of Nodes with Kernelized Score Functions
Fast Nearest Neighbour Search (Wraps ANN Library) Using L2
Metric
Fast Nearest Neighbour Search (Wraps ANN Library) Using L1
Metric
Reliable Accurate Prenatal non-Invasive Diagnosis R package
Bindings to AppArmor and Security Related Linux Tools
Application Directories: Determine Where to Save Data, Caches,
and Logs
Miscellaneous (stats) helper functions with sane defaults for
reporting
Representative and Adequate Prioritization Toolkit in R
Functions to import data from Arc/Info V7.x binary coverages
Testing Gene-Environment Interaction for Rare Genetic Variants
Ecological and biogeographical null model tests for comparing
rarefaction curves
Regularized Autoregressive Hidden Semi Markov Model
Calculation of Rarity Indices for Species and Assemblages of
Species
Solvers for Large Scale Eigenvalue and SVD Problems
Range Ancestral State Estimation for Phylogeography and
Comparative Analyses
Kernel Based Estimates on in-Memory Raster Images
A Raster Where Cells are Generic Objects
Routines for Solving Rate-Distortion Problems
A Modification of Fleiss' Kappa in Case of Nominal and Ordinal
Variables
Confidence Intervals for Comparisons of Binomial or Poisson
Rates
Calculating Ratios Between Two Data Sets and Correction for
Adhering Particles on Plants
Graphical User Interface for Data Science in R
Parameter Estimation for the Averaging Model of Information
Integration Theory
Interface to the Bird-Watching Dataset Proyecto AVIS
Read and Write BAM (Binary Alignment) Files
R Interface to Brazilian Central Bank Web Services
The Beta Random Number and Dirichlet Random Vector Generating
Functions
Tools for 'Box Geometry Model' (BGM) Files and Topology for the
Atlantis Ecosystem Model
Interface to the 'Biodiversity' 'Heritage' Library
Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction
Data
Handling Linear Gaussian Bayesian Networks
Extensible, Parallelizable Implementation of the Random Forest
Algorithm
Perform Rosenbaum bounds sensitivity tests for matched and
unmatched data
Rbundler manages an application's dependencies systematically
and repeatedly
Fast and Light-Weight Caching (Memoization) of Objects and
Results to Speed Up Computations
Calculation of the Integrated Flow of Particles Between Polygons
Access and Plot CanVec and CanVec+ Data for Rapid Basemap
Creation in Canada
Loglinear Models for Capture-Recapture Experiments
This package builds maps with a full cartographic layout
Large, Sparse Optimal Matching with Refined Covariate Balance
Optimal Subset Matching with Refined Covariate Balance
Parametric Bootstrapping to Control Rank Conditional Coverage
Miscellaneous R Functions for Swedish Regional Cancer Centers
R Cross Entropy Inspired Method for Optimization
Analytical Procedures in Support of Brazilian Public Sector
External Auditing
Conjugate Gradient Minimization of Nonlinear Functions
Chess Move, Generation/Validation, Piece Placement/ Movement,
and Check/Checkmate/Stalemate Detection
Discrete Choice (Binary, Poisson and Ordered) Models with Random
Parameters
Post-Processing of the Markov Chain Simulated by ChronoModel or
Oxcal
Fetch Climate Data from Environment Canada
RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather
GENeretor): a package to generate time series of climate
indices from RMAWGEN generations
R tools for integrating with the www.clinicalcodes.org
repository
Run 'R CMD check' from 'R' and Capture Results
R Commander Plug-in for Repeated-Measures ANOVA
Rcmdr Plug-In for Business and Customer Analytics
R Commander Plugin for (industrial) Design of Experiments
Plugin de R-Commander para el Manual 'EACSPIR'
Rcmdr Evidence Based Medicine Plug-in Package
R Commander Plug-in for the EZR (Easy R) Package
R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means
and Gustafson Kessel)
R Commander Plug-in for Fitting Generalized Waring Regression
Models
R Commander Plug-in for Data Visualization with 'ggplot2'
Graphical User Interface for Conducting Meta-Analyses in R
Adds menu items to produce mosaic plots and assoc plots to Rcmdr
R Commander Plug-in for University Level Applied Statistics
R Commander Plug-in for Robust Principal Component Analysis
Graphical POINT of view for questionnaire data Rcmdr Plug-In
R Commander Plug-in for Risk Demonstration
Rcmdr Receiver Operator Characteristic Plug-In PACKAGE
Tools for sampling in Official Statistical Surveys
Rcmdr Plugin for Designing and Analyzing Single-case Experiments
R Commander Plug-in for the 'survival' Package
Graphical Integrated Text Mining Solution
Tools for Manipulating and Summarizing CMIP5 Data
Interface to Colombos Compendia using the Exposed REST API
Functions to Support Extension Education Program Evaluation
A Collection of Small Text Corpora of Interesting Data
Regions of Common Profiles Modelling with Mixtures-of-Experts
'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest
Neighbors
'Rcpp' Interface to the APT Package Manager
'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Rcpp bindings for the Boost Date_Time library
'Rcpp' Integration for the 'Blaze' High-Performance C++ Math
Library
Examples using RcppClassic to interface R and C++
Read-Write Support for 'NumPy' Files via 'Rcpp'
Global Optimization by Differential Evolution in C++
'Rcpp' Integration for the 'Eigen' Templated Linear Algebra
Library
Examples using 'Rcpp' to Interface R and C++
'Rcpp' Bindings for the 'Faddeeva' Package
'Rcpp' Interface for Querying System Configuration Variables
'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Iterator Based Expression Template Expansion of Standard
Operators
'Rcpp' Integration for the 'MLPACK' Library
'Rcpp' Integration for Numerical Computing Libraries
Seamless Interface to Octave -- And Matlab
An Interruptible Progress Bar with OpenMP Support for C++ in R
Packages
R Bindings to the 'Quantuccia' Header-Only Essentials of
'QuantLib'
'Rcpp' Bindings for 'Redis' using the 'hiredis' Library
R Interface to the Shark Machine Learning Library
Rcpp Bindings for Sequential Monte Carlo
'Rcpp' Integration of the 'Streamulus' 'DSEL' for Stream
Processing
Rcpp-Based Truncated Normal Distribution RNG and Family
'Rcpp' Bindings to Parser for Tom's Obvious Markup Language
'Rcpp' Integration of Different "Ziggurat" Normal RNG
Implementations
R Interface to the CSDP Semidefinite Programming Library
Styling of Graphics using Cascading Style Sheets
Robust Cure Models for Survival Analysis
General Network (HTTP/FTP/...) Client Interface for R
Shrunken Centroids Regularized Discriminant Analysis
'DataCite' Client for 'OAI-PMH' Methods and their Search 'API'
Manipulation Testing Based on Density Discontinuity
Toolbox for Regression Discontinuity Design ('RDD')
Robust Data Envelopment Analysis (DEA) for R
Interact with the UK AIR Pollution Database from DEFRA
Relevant Dimension Estimation (RDE) in Feature Spaces
A Collection of Functions to Experiment Dice Rolls
R interface to the dieharder RNG test suite
Measurement and Partitioning of Similarity-Sensitive
Biodiversity
Local Randomization Methods for RD Designs
Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files
R Bindings for the Discourse Network Analyzer
Generating Various Numerical Representation Schemes of DNA
Sequences
R Interface to the 'Deutsche Nationalbibliothek (German National
Library) API'
Get the Category of Content Hosted by a Domain
Low-Level Interface to the '.NET' Virtual Machine Along the
Lines of the R C/Call API
Create Doxygen Documentation for Source Code
Update and Manipulate Rd Documentation Objects
Client for the Digital Public Library of America ('DPLA')
Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Programmatic Interface to the 'Dropbox' API
R Interface to DSDP Semidefinite Programming Library
An R wrapper for the Data Science Toolkit API
The rDVR package allows you to start stop and save a video
server from within R
Select and Download Climate Data from 'DWD' (German Weather
Service)
Reactive Transport Modelling in 1d, 2d and 3d
Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG)
Reads Mass Spectrometry Data in Bruker *flex Format
Read Data Stored in DBC (Compressed DBF) Files
Suite of Functions to Flexibly Read Data from Files
Reading Machine Learning Benchmark Data Sets in Different
Formats
Reads Mass Spectrometry Data in mzXML Format
Import and Handling for Plain and Formatted Text Files
Monotonize Point and Interval Functional Estimates by
Rearrangement
Empirical Bayes Estimation and Inference in R
R Client for the eBird Database of Bird Observations
Finite Mixture Modeling, Clustering & Classification
Build Regular Expressions in a Human Readable Way
Core Functionality for the 'rebus' Package
Date and Time Extensions for the 'rebus' Package
Numeric Extensions for the 'rebus' Package
Unicode Extensions for the 'rebus' Package
Relevant Component Analysis for Supervised Distance Metric
Learning
3D Reconstruction of Archaeological Excavations
Redundancy Control in Pathways databases
Preprocessing Tools to Create Design Matrices
Ordination Methods for the Analysis of Beta-Diversity Indices
Compute the Rectangular Statistical Cartogram
Lab for Developing and Testing Recommender Algorithms
Book-Crossing Dataset (BX) for 'recommenderlab'
Recommender System using Matrix Factorization
Companion Package to the Book 'R: Einführung durch angewandte
Statistik'
Reconstruction of Daily Data - Precipitation
Markov Chain Monte Carlo Methods for Redistricting Simulation
Tools for the IUCN Red List of Ecosystems and Species
Applications of Empirical Dynamic Modeling from Time Series
Regression Trees with Random Effects for Longitudinal (Panel)
Data
EWAS using Reference-Free DNA Methylation Mixture Deconvolution
Gene and Splice Site Annotation Using Annotation Data from
Ensembl and UCSC Genome Browsers
API Wrapper for the UK REF 2014 Impact Case Studies Database
Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
Refining Data Table Using a Set of Formulas
Interactive Plotting for Functional Data Analyses
Wavelet-Domain Regression with Functional Data
Tools for an Introductory Class in Regression and Modeling
Cluster analysis via regression coefficients
Detecting Mislabeled Samples in Genetic Data
Risk Estimation for Genetic and Environmental Traits
Wrappers Around 'base::grep()' for Use with Pipes
Helper Functions for Regression Analysis
Network-Based Regularization for Generalized Linear Models
Gaussian Linear Models with Linear Covariance Structure
Expander Functions for Generating Full Gradient and Hessian from
Single-Slot and Multi-Slot Base Distributions
Random Subspace Method (RSM) for Linear Regression
Non-Parametric Bayesian Spectrum Estimation for Multirate Data
Detect and Test Regular Sequences and Subsequences
Regularized Simultaneous Component Based Data Integration
Searching for Footprints of Selection using Haplotype
Homozygosity Based Tests
Data Only: Searching for Footprints of Selection using Haplotype
Homozygosity Based Tests
Functions from "Reinsurance: Actuarial and Statistical Aspects"
Item Analysis Package with Standard Errors
Relabel Loadings from MCMC Output for Confirmatory Factor
Analysis
Relative importance of regressors in linear models
Data Structures and Algorithms for Relations
relax -- R Editor for Literate Analysis and lateX
Relaxation of glmnet models (as in relaxed lasso, Meinshausen
2007)
Functions for estimating parameters in software reliability
models
Tools for Structural Reliability Analysis
Package for some probability distributions
Relative Contribution of Effects in a Regression Model
Match Regular Expressions with a Nicer 'API'
Tidy Output from Regular Expression Matching
Insert and Extract "Reminders" from Function Comments
Extensible Markov Model for Modelling Temporal Relationships
Between Clusters
Regularized Multivariate Regression for Identifying Master
Predictors
Empirical Orthogonal Teleconnections in R
Remote R: Control a Remote R Session from a Local One
R Package Installation from Remote Repositories, Including
'GitHub'
Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Renewal Method for Extreme Values Extrapolation
Reordering the dendrogram according to the class labels
GWAS for Multiple Observations on Related Individuals
Global tests for expression data of high-dimensional sets of
molecular features
Replicability Analysis for Multiple Studies of High Dimension
Tools for Handling EpiJSON (Epidemiology Data) Files
Two-Way ANOVA-Like Method to Analyze Replicated Point Patterns
Miscellaneous Tools for Reproducible Research
Repeated Measures Proportional Odds Logistic Regression
Microsoft Word and PowerPoint Documents Generation
External jars required for package ReporteRs
A General Message and Error Reporting System
An Easy Way to Report Regression Analysis
Tools for automatically generating reproducible clinical report
Assist the Workflow of Writing Academic Articles and Other
Reports
Generate LaTeX Tables of Descriptive Statistics
R Interface to 'EPP-Lab', a Java Program for Exploratory
Projection Pursuit
Determine the representativity of two multidimensional data sets
Prepare Reproducible Example Code for Sharing
Reproduce Statistical Analyses and Meta-Analyses
A Set of Tools that Enhance Reproducibility Beyond Package
Management
Examples of Recursive Lists and Nested or Split Data Frames
Powerful Classes for HTTP Requests and Responses
General Purpose Client for 'ERDDAP' Servers
Reordering and/or Reflecting Factors for Simulation Studies with
Exploratory Factor Analysis
Data Sets for Mathematical Statistics with Resampling in R
Regression and Similarity Evaluation for Memory-Based Learning
in Spectral Chemometrics
Tools for Analysis, Design, and Operation of Water Supply
Storages
Flexibly Reshape Data: A Reboot of the Reshape Package
A GUI for the reshape2 and plyr packages
electrical properties of resistor networks
Resource Selection (Probability) Functions for Use-Availability
Data
Tools for Conducting Respirometry Experiments
Functions for Working with the 'www.estimize.com' Web Services
Robust Estimation of Location and Scatter
Multivariate Normal Restricted by Affine Constraints
Restricted Statistical Estimation and Inference for Linear
Models
Repeated Function Evaluation for Sensitivity Analysis
Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Revealed Preferences and Microeconomic Rationality
R Markdown Format for 'reveal.js' Presentations
Reverse Engineering Censored, Decoupled Residential Data for
Population Density Estimation
Reverse Geocoding with the Photon Geocoder for OpenStreetMap and
Google Maps
R Wrappers for EXPOKIT; Other Matrix Functions
Get Seismic Data from the International Federation of Digital
Seismograph Networks
Rapid Feasible Generalized Least Squares
Importance Measure and Selection for Groups of Variables with
Random Forests
Easy Handling of and Access to Files Organized in Structured
Directories
'Programmatic Interface to the 'openfisheries.org' API'
Basic R Interface to the 'FLANN' C++ Library
Multivariate Analysis of Metabolomics Data using Random Forests
MarkLogic NoSQL Database Server in-Database Analytics for R
Graphics for Spherical Distributions and Earthquake Focal
Mechanisms
Data Integration Feature for Force.com and Salesforce.com
Code Examples to Accompany the Book "R for Dummies"
BATWING for calculating forensic trace-suspect match
probabilities
Estimate Permutation p-Values for Random Forest Importance
Metrics
Feasible Solution Algorithm for Finding Best Subsets and
Interactions
Random Forests Model Selection and Performance Evaluation
Gabriel Multiple Comparison Test and Plot the Confidence
Interval on Barplot
Gamma convolutions for methylation array background correction
Interface to the Global 'Biodiversity' Information Facility
'API'
LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network
Reconstruction
Hierarchical Modeling and Frequency Method Checking on
Overdispersed Gaussian, Poisson, and Binomial Data
Regularized and Sparse Generalized Canonical Correlation
Analysis for Multiblock Data
Bindings for the Geospatial Data Abstraction Library
Tools to Generate Daily-Precipitation Time Series
R Version of GENetic Optimization Using Derivatives
Interface to Geometry Engine - Open Source (GEOS)
Build, Import and Export GEXF Graph Files
Access WHO Global Health Observatory Data from R
R Interface to Global Biotic Interactions
Unsampled Data in R for Google Analytics Premium Accounts
UI for the RGP genetic programming framework
Data and Functions from the Book R Graphics, Second Edition
Interface Between GRASS 7 Geographical Information System and R
Data frame editor and dialog making wrapper for RGtk2
Interface to the 'Handsontable.js' Library
Retrieve data sets from the HealthData.gov data API
Random Heteroscedastic Nested Error Regression
Side Effect Risks in Hospital : Simulation and Estimation
Permits *apply() Style Dispatch for 'HPC'
Benchmarks for High-Performance Computing Environments
Heart Rate Variability Analysis of ECG Data
Regularized Hotelling's T-square Test for Pathway (Gene Set)
Analysis
Methods for Accessing Huge Amounts of Data [deprecated]
ri: R package for performing randomization-based inference for
experiments
Randomization Inference for Treatment Effects on a Binary
Outcome
Radiomics Image Analysis Toolbox for Grayscale Images
Computes and Compares Species Richnesses
Ridge Regression with Automatic Selection of the Penalty
Parameter
R Package for Ridge Fusion in Statistical Learning
Ridit Analysis (An extension of the Kruskal-Wallis Test.)
Accesses Weather Data from the Iowa Environment Mesonet
Client for 'Neuroscience' Information Framework 'APIs'
ILO Open Data via Ilostat Bulk Download Facility or SDMX Web
Service
Read 'ImageJ' Region of Interest (ROI) Files
An Installation Framework for Shiny Apps
C++ Classes to Embed R in C++ Applications
Computes 26 Financial Risk Measures for Any Continuous
Distribution
Risk Regression Models and Prediction Scores for Survival
Analysis with Competing Risks
Riskset ROC curve estimation from censored survival data
Risk Quantification for Stock Portfolios under the T-Copula
Model
Isothermal Titration Calorimetry (ITC) Data Analysis
Integrated Taxonomic Information System Client
River Network Distance Computation and Applications
In vitro in vivo correlation linear level A
Steady and Unsteady Open-Channel Flow Computation
Reversible Jump MCMC for the Analysis of CGH Arrays
A Clean, Whitespace-Sensitive Template Language for Writing HTML
Analysis of Data Acquired Using the Receiver Operating
Characteristic Paradigm and Its Extensions
Provides access to databases through the JDBC interface
Perform JIVE Decomposition for Multi-Source Data
R-interface to Gene Drop Simulation from JPSGCS
R interface of the Gateway to Advanced and User-friendly
Statistics Service
Consumer for APIs that Follow the JSON API Specification
Serialize R objects to JSON, JavaScript Object Notation
Using Apache 'Kafka' Messaging Queue Through 'R'
External Jars Required for Package 'rkafka'
Random KNN Classification and Regression
Topological Analysis of Knotted Proteins, Biopolymers and 3D
Structures
Mann-Kendall Test, Seasonal and Regional Kendall Tests
Data Exchange Between R and LabKey Server
Functions for Base Types and Core R and 'Tidyverse' Features
Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Analyze and Design Repeated Low-Dose Challenge Experiments
Bayesian LDA for Mixed-Membership Clustering Analysis
Estimates, Plots and Evaluates Leaf Angle Distribution
Functions, Calculates Extinction Coefficients
R Interface to RNG with Multiple Streams
Ensemble Empirical Mode Decomposition (EEMD) and Its Complete
Variant (CEEMDAN)
A Toolbox for Non-Tabular Data Manipulation
Utilities for Writing to 'LibreOffice Writer' Documents
R Parallel Implementation of Local Outlier Factor(LOF)
Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive
Models
Solving Ordinary Differential Equations to Understand
Luminescence
'Shiny' Applications for the R Package 'Luminescence'
Fit Multi-Modal Mallows' Models to ranking data
Continuous Optimization using Memetic Algorithms with Local
Search Chains (MA-LS-Chains) in R
Client for 'mapshaper' for 'Geospatial' Operations
Detect Marine Heat Waves and Marine Cold Spells
Read and Write MAT Files and Call MATLAB from Within R
The MCFS-ID Algorithm for Feature Selection and Interdependency
Discovery
HTML Output Formats and Templates for 'rmarkdown' Documents
'R' 'Markdown' Format for 'shower' Presentations
An Individual-Based Population Genetic Simulation Environment
Data Mining Classification and Regression Methods
Supervised, Unsupervised, Semi-Supervised Classification with
MIXture MODelling (Interface of MIXMOD Software)
Combining Mixture Components for Clustering
Miscellaneous Collection of Functions for Medical Data Analysis
Connect R with MOA for Massive Online Analysis
Automate Mouse Clicks and Send Keyboard Input
Rounded Mixture Package. Performs Probability Mass Function
Estimation with Nonparametric Mixtures of Rounded Kernels
R MPFR - Multiple Precision Floating-Point Reliable
Interface (Wrapper) to MPI (Message-Passing Interface)
Causal Mediation Analysis Using Weighting Approach
Importing Data from Loligo Systems Software, Calculating
Metabolic Rates and Critical Tensions
RMRAINGEN (R Multi-site RAINfall GENeretor): a package to
generate daily time series of rainfall from monthly mean values
Amazing Random Facts About the World's Greatest Hacker
Root-mean-square goodness-of-fit test for simple null hypothesis
Signal-Noise Separation in Random Matrices by using Eigenvalue
Spectrum Analysis
Distributions, Statistics and Tests derived from Random Matrix
Theory
Utilities for Nonlinear Regression and Repeated Measurements
Models
Weighted Rasch Modeling and Extensions using Conditional Maximum
Likelihood
Database Interface and 'MySQL' Driver for R
Log-Linear Poisson Graphical Model with Hot-Deck Multiple
Imputation
Wrapper for several R packages and scripts to automate RNA-seq
analysis
RNA Secondary Structure Module Mining, Comparison and Plotting
RNA Secondary Structure Comparison and Module Mining
World Vector Map Data from Natural Earth Used in 'rnaturalearth'
Using Graphs as a Navigational Infrastructure
Some image data used in the RnavGraph package demos
Visualization of High-Throughput Data on Large-Scale Biological
Networks
EUtils libraries for use in the R environment
Obtain, Organize, and Visualize NCEP Weather Data
Build and Grade Multiple Choice Exams with Randomized Content
Fast Network Modularity and Roles Computation by Simulated
Annealing (Rgraph C Library Wrapper for R)
Provides an Interface to the Agent-Based Modelling Platform
'NetLogo'
Tools for Analyzing Content Homogeneity and News Diffusion using
Computational Text Analysis
Semantically Rich I/O for the 'NeXML' Format
Seeding the Default RNG with a Numeric Vector
Utility functions for working with Random Number Generators
Toolbox for WELL Random Number Generators
Random number generator WELL19937a with 53 or 32 bit output
Image Registration Using the 'NiftyReg' Library
An Interface to the NOAA Operational Model Archive and
Distribution System
Interface to the National 'Phenology' Network 'API'
UK National River Flow Archive Data from R
Find Free Versions of Scholarly Publications via the oaDOI
Service
Robust Analysis of High Dimensional Data
Interpolation Grids for Packages of the 'RobASt' - Family of
Packages
Robust Estimation for Compositional Data
Forecasting Time Series with Robust Exponential Smoothing
Optimally Robust Influence Curves and Estimators for Location
and Scale
Infinitesimally robust estimators for preprocessing omics data
Generation of Dynamic Coappearance Matrices Within Texts
A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler'
Permissions Checker
Robust Periodogram and Periodicity Detection Methods
Three-Step Regression and Inference for Cellwise and Casewise
Contamination
Optimally robust influence curves for regression and scale
Robust Regularized Singular Value Decomposition
Data Management for Hydrology and Beyond Using the Observations
Data Model
Truncated Maximum Likelihood Fit and Robust Accelerated Failure
Time Regression for Gaussian and Log-Weibull Case
Robust Bayesian Linear Mixed-Effects Models using ABC
Robust Methods using Exponential Tilt Model
An Object Oriented Solution for Robust Factor Analysis
Robust Estimation for Generalized Additive Models
Robust Gaussian Stochastic Process Emulation
Robust Methods for High-Dimensional Data
Robust Estimation of the Generalized log Gamma Model
An Extended Rao-Stirling Diversity Index to Handle Missing Data
Robust Estimation of Variance Component Models
'eXtra' / 'eXperimental' Functionality for Robust Statistics
Construction of diagnostic or prognostic scoring system and
internal validation of its discriminative capacities based on
ROC curve and 0.633+ boostrap resampling
Non-Inferiority Test for Paired ROC Curves
Robust Rank Correlation Coefficient and Test
Visualizing the Performance of Scoring Classifiers
Time-Dependent ROC Curve Estimators and Expected Utility
Functions
Non-parametric estimation of ROC curves without Gold Standard
Test
Wrapper Functions for 'ODAM' (Open Data for Access and Mining)
Web Services
Provides Access to Databases Through the ODBC Interface
Parameterized Queries Extension for RODBC
Ordinary Differential Equation (ODE) Solvers Written in R Using
S4 Classes
R Optimization Infrastructure: 'MIPLIB' 2010 Benchmark Instances
'ROI' Optimization Problems Based on 'NETLIB-LP'
'alabama' Plugin for the 'R' Optimization Infrastructure
'Clp (Coin-or linear programming)' Plugin for the 'R'
Optimization Interface
'ECOS' Plugin for the 'R' Optimization Infrastructure
'lp_solve' Plugin for the 'R' Optimization Interface
'Multi-Solution' Binary Linear Problem Plugin for the 'R'
Optimization Interface
'SCS' Plugin for the 'R' Optimization Infrastructure
Finding Optimal Three-Group Splits Based on a Survival Outcome
Plots Surfaces of Rates of Mortality Improvement
R Object-Oriented Programming with or without References
Finds Roots, Extrema and Inflection Points of a Curve
Nonlinear Root Finding, Equilibrium and Steady-State Analysis of
Ordinary Differential Equations
Distribution of Largest Root for Single and Double Wishart
Settings
Model Selection with FDR Control of Selected Variables
Accesses Air Quality Data from the Open Data Platform OpenAQ
Reproducible Data Retrieval from the Roper Center Data Archive
Optimally robust estimation - old version
Optimally robust estimation for regression-type models
Matrix Reconstruction from a Few Entries
OCI Based Oracle Database Interface for R
Plot Raster Map Tiles from Open Street Map and Other Sources
Robust Sparse PCA using the ROSPCA Algorithm
Interface to the 'Open Tree of Life' API
Roughened Random Forests for Binary Classification
Simplification of Decision Tables using Rough Sets
Data Analysis Using Rough Set and Fuzzy Rough Set Theories
A Simple Router for HTTP and WebSocket Requests
Royston's H Test: Multivariate Normality Test
Simple interactive controls for R using the tcltk library
Recursive Partitioning and Regression Trees
Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Classification trees for ordinal responses
Tools for parsing and manipulating rpart objects, including
generating machine readable rules
Recognising Visual Charting Patterns in Time Series Data
RobustPCA: Decompose a Matrix into Low-Rank and Sparse
Components
Tools for the Construction of Clinical Code Lists for Primary
Care Database Studies
RPCLR (Random-Penalized Conditional Logistic Regression)
Read, write, visualize and manipulate PDB files
Tools for Chromatographic Column Characterization and Modelling
Chromatographic Peak
Reduced Piecewise Exponential Estimate/Test Software
Easy Interface to Advanced PostgreSQL Features
Fast Simulation of Normal/Exponential Random Variables and
Stochastic Differential Equations / Poisson Processes
Interface to PHAST Software for Comparative Genomics
Phylogenetic Comparative Tools for Missing Data and
Within-Species Variation
Build Powerful Pivot Tables and Dynamically Slice & Dice your
Data
Interface to the Search 'API' for 'PLoS' Journals
Graphical User Interface (GUI) for Interactive R Analysis
Sessions
Recursive Partitioning for Modeling Survey Data
Converter and Interpreter for Reverse Polish Notation
Expressions
Managing Animal Movement Data with 'PostGIS' and R
R Interface to the 'PostgreSQL' Database System
Sample Size Computations Controlling the Type-II Generalized
Family-Wise Error Rate
Resolvable partially pairwise balanced design and Space-filling
design via association scheme
Reads, Annotates, and Normalizes Reverse Phase Protein Array
Data
Regularized PQL for Joint Selection in GLMMs
Database Preferences and Skyline Computation
Estimating Disease Prevalence from Registry Data
Functions for Working with 'Eprime' Text Files
R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Rank Preserving Structural Failure Time Models
Goodness of Fit Tests for High-Dimensional Linear Regression
Models
Repeatability Estimation for Gaussian and Non-Gaussian Data
R Interface to the Pushbullet Messaging Service
Statistical Methods for the Randomized Response Technique
Real-Time Adaptive Penalization for Streaming Lasso Models
Estimating Replication Rate for Genome-Wide Association Studies
Ridge Regression and Other Kernels for Genomic Selection
Re-parametrization of RR-BLUP to allow for a fixed residual
variance
Scalable Robust Estimators with High Breakdown Point
Robust Methods for Multiway Data Analysis, Applicable also for
Compositional Data
Robust Multivariate Methods for High Dimensional Data
Scalable Robust Estimators with High Breakdown Point for
Incomplete Data
'DRNG' on Intel CPUs with the 'RdRand' Instruction for R
Environment for Evaluating Recommender Systems
Invoke 'Repast Simphony' Simulation Models
Fitting Distributions to Given Data or Known Quantiles
Robust Regularized Linear Discriminant Analysis
Correlation and Regression Analyses for Randomized Response Data
Dynamic Generation of Scientific Reports
Randomized Response Techniques for Complex Surveys
Data related to the book "R Statistical Application Development
by Example"
SAGA Geoprocessing and Terrain Analysis in R
Resampling-Based Analysis of Geostatistical Data
MCMC Sampling of Gene Genealogies Conditional on Genetic Data
Ports the Workflow of "Resampling Stats" Add-in to R
Functions to Create and Evaluate Search and Rescue Plans
Random Sampling Association Rules from a Transaction Dataset
Tools, Classes, and Methods for Interfacing with SaTScan
Stand-Alone Software
An R Package for Stepwise Cluster Analysis
Rao-Scott Cochran-Armitage by Slices Trend Test
Bi-Directional Interface Between 'R' and 'Scala' with Callbacks
SciMark 2.0 Benchmark for Scientific and Numerical Computing
Deployment Interface for R Markdown Documents and Shiny
Applications
A Method to Download Department of Education College Scorecard
Data
Ray Shooting Depth (i.e. RS Depth) functions for bivariate
analysis
Tools for Reading SDMX Data and Metadata
Estimating the Proportion of Genetically Modified Seeds in
Seedlots via Multinomial Group Testing
Robust Structural Equation Modeling with Missing Data and
Auxiliary Variables
Gini methodology-based correlation and clustering analysis of
microarray and RNA-Seq gene expression data
Robust Sparse Gaussian Graphical Modeling via the
Gamma-Divergence
Functions for Hierarchical Bayesian Estimation: A Flexible
Approach
Siena - Simulation Investigation for Empirical Network Analysis
Robust Signature Selection for Survival Outcomes
A Stemming Algorithm for the Portuguese Language
Submit R Calculations to a 'SLURM' Cluster
Loading Facebook and Instagram Advertising Data from
'Smartly.io'
Get Real-Time Meteorological Data in SMET Format
Plant Root System Markup Language (RSML) File Processing
Neural Networks in R using the Stuttgart Neural Network
Simulator (SNNS)
Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web
Efficient Score Statistics for Genome-Wide SNP Set Analysis
El Nino/Southern Oscillation (ENSO) and Related Climate Indices
Adapt Numerical Records to Fit (in)Equality Restrictions
Spatially-Explicit Power Analysis for Conservation and Ecology
Conversion Between Attitude Representations of DCM, Euler
Angles, Quaternions, and Euler Vectors
SQL Server R Database Interface (DBI) and 'dplyr' SQL Backend
A Collection of Methods for Singular Spectrum Analysis
Implementations of Semi-Supervised Learning Approaches for
Classification
Simulation of Supply Reservoir Systems using Standard Operation
Policy
Persistent Fast Amortized Stack and Queue Data Structures
Bayesian Applied Regression Modeling via Stan
Tools for Developing R Packages Interfacing with 'Stan'
Random orthonormal matrix generation on the Stiefel manifold
Simulate and Develop Streaming Processing in [R]
A Convenience Interface for the Stripe Payment API
Interface to 'Sunlight' Foundation 'APIs'
Robust Estimation of the Proportion of Treatment Effect
Explained by Surrogate Marker Information
Design and Analysis of Disease Surveillance Activities
Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays
An R SVG Graphics Device with Dynamic Tips and Hyperlinks
R interface to SymPy computer algebra system
Manage and manipulate large collections of R objects stored as
tape-like files
Tools for analyzing sales report files of iTunes Connect
Tools for Tensor Analysis and Decomposition
Automatic Text Classification via Supervised Learning
Functions for calculation of texture metrics for Grey Level
Co-occurrence Matrices
Transcription Factor Binding Site Identification Tool
Supports the Analysis of RTI MicroPEM Output Files
Inequality, Welfare and Poverty Indices and Curves using the
EU-SILC Data
'STK++' Core Library Integration to 'R' using 'Rcpp'
Truncated Newton Function Minimization with Bounds Constraints
Interpolation of Data with Variable Spatial Support
Analyze Download Logs from the CRAN RStudio Mirror
Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
A Simple R-Based Implementation of a Trie (A.k.a. Digital
Tree/Radix Tree/Prefix Tree)
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
Implementation
The R Implementation of the 't-walk' MCMC Algorithm
Implementation of Unobserved Components Model (UCM)
Data and Functions for USA State and County Unemployment Data
Convert 'RUnit' Test Functions into 'testthat' Tests
Runiversal - Package for converting R objects to Java variables
and XML
Interface Utilities, Model Templates, Parallel Computing Methods
and Additional Distributions for MCMC Models in JAGS
R Interface to the UNU.RAN Random Variate Generators
A GUI for the UNU.RAN random variate generators
Detect and Remove Unwanted Variation using Negative Controls
Testing and Plotting Procedures for Biostatistics
R-Values for Ranking in High-Dimensional Settings
Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Query 'R' Versions, Including 'r-release' and 'r-oldrel'
Search 'Vertnet', a 'Database' of Vertebrate Specimen Records
Rare Variants Association Analyses with Family Data
R Graphics Devices for Vector Graphics Output
Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators
Calling haplotype-based and variant-based pedigree
disequilibrium test for rare variants in pedigrees
High Performance Algorithms for Vine Copula Modeling
Variable Metric Nonlinear Function Minimization
Calculates the Distance Between Voter and Multiple Polling
Locations
Methods for Family-Based Rare-Variant Genetic Association Tests
Probability of Sharing Rare Variants among Relatives
population control weighted rare-variants TDT
A package for accessing World Bank climate data
Detects spatial outliers using a Random Walk on Bipartite Graph
Interface for the 'Wildbook' Wildlife Data Management Framework
Download, Edit and Transform Wind Data from GFS
R We There Yet? Visualizing MCMC Convergence in Phylogenetics
R x C Ecological Inference With Optional Incorporation of Survey
Information
Functions to Parse and Create XMCDA Files
Functions to Compute Chemical Reaction Similarity
Facilities for Simulating from ODE-Based Models
Combined Total and Allele Specific Reads Sequencing Study
Maximum Likelihood Shrinkage via Generalized Ridge or Least
Angle Regression
R Interface to the Yacas Computer Algebra System
R package provide functions to translate English words into
Chinese
Companion to the Forthcoming Book - R you Ready?
Access to the YouTheria Mammal Trait Database
Grain size analysis, textural classifications and distribution
of unconsolidated sediments
GUI Tool for Data Management like SPSS or Stata
R Module for Working with the 'Zabbix API'
Google's S2 Library for Geometry on the Sphere
Functions for University of Auckland Course STATS 201/208 Data
Analysis
Set of Common Tools for Forecast Verification
Spatial Two Stage Least Squares Estimation
Biclustering via Sparse Singular Value Decomposition
Incorporating Stability Selection
Somatic Copy Number Alteration Analysis Using Sequencing and SNP
Array Data
Detection of Fixations in Eye-Tracking Data
SA Counterparty Credit Risk under Basel III
Stability Analysis in Differentially Expressed Genes
Species Abundance Distributions with Independent-Species
Assumption
Maximum Likelihood Models for Species Abundance Distributions
Small Area Estimation: Time-series Models
Stochastic Approximation Expectation Maximization (SAEM)
Algorithm
A Stacked Autoencoder Implementation with Interface to
'neuralnet'
Small Area Estimation for Rao and Yu Model
Simulation Tools for Small Area Estimation
Generalized and Safe-Bayesian Ridge and Lasso Regression
A Toolbox for the Analysis of Proteomics Data
Encrypt and Decrypt Strings, R Objects and Files
Sensitivity Analysis for Functional Input
Software for the Analysis of Genetic Architecture
Akaike Information Criterion for Sparse Estimation
Elastic Net and (Adaptive) Lasso Penalized Sparse Asymmetric
Least Squares (SALES) and Coupled Sparse Asymmetric Least
Squares (COSALES) using Coordinate Descent and Proximal
Gradient Algorithms
A Framework for Comparing the Performance of MCMC Samplers
Sample Size Calculation for Various t-Tests and Wilcoxon-Test
Sample Size Calculations for Complex Surveys
Sample Size Calculations for Case-Control Studies
Sample size calculations for normal means
Calculating sample size requirements when estimating the
difference between two binomial proportions
Sampling Data Within Different Study Designs for Cluster
Randomized Trials
Optimal Stratification of Sampling Frames for Multipurpose
Sampling Surveys
Sampling Surface Simulation for Areal Sampling Methods
SAM: Significance Analysis of Microarrays
Stochastic Augmentation of Matched Data Using Restriction
Methods
Sensitivity Analysis of a Meta-analysis with Unpublished but
Registered Analytical Investigations
Statistical Analysis of Network Data with R
Downloads and Tidies the San Francisco Public Utilities
Commission Beach Water Quality Monitoring Program Data
C/C++ source code to trigger Address and Undefined Behaviour
Sanitizers
Stratified Analysis with Nonparametric Covariable Adjustment
Spectral Analysis for Physical Applications
Simulation and Prediction with Seasonal ARIMA Models
XML Output Functions for Easy Creation of Moodle Questions
Import ASCII files directly into R using only a SAS input script
Data sets from "SAS System for Mixed Models"
Various Functions for Handling and Manipulating Remote Sensing
Data
Spanning Trees Used for Network Inference
Bayesian Emulation, Calibration and Validation of Computer
Models
Small-Sample Adjustments for Wald tests Using Sandwich
Estimators
Sequential BART for Imputation of Missing Covariates
Semiparametric Bayesian Gaussian copula estimation and
imputation
Computing the Singular BIC for Multiple Models
sbioPN: Simulation of deterministic and stochastic spatial
biochemical reaction networks using Petri Nets
Semidefinite Programming for Fitting Block Models of Equal Block
Sizes
Detecting structural breaks using rectangle covering
(non-parametric method)
Compute scagnostics - scatterplot diagnostics
Single-Case Data Analyses for Single and Multiple AB Designs
Space-Time Anomaly Detection using Scan Statistics
Shape-Constrained Additive Regression: a Maximum Likelihood
Approach
Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models
Summary based Conditional Association Test
Simultaneous Confidence Bands for the Mean of Functional Data
Estimating Hierarchical Linear Models for Single-Case Designs
Construct Reduced Trees with Predefined Nodal Structures
Stellar CharactEristics Pisa Estimation gRid
Stellar CharactEristics Pisa Estimation gRid for Binary Systems
Supervised Component Generalized Linear Regression
Analyse Citation Data from Google Scholar
Functions and datasets for math used in school
Tools for Analyzing Factorial Experiments
A package on the Schwartz two-factor commodity model
Standardized Climate Indices Such as SPI, SRI or SPEI
A Tool Set for Analyzing Political Behavior Data
Visualize Reproducibility and Replicability in a Comparison of
Scientific Studies
Scientific Graphing Functions for Factorial Designs
Measure Growth Patterns and Align Sampling Spots in Photographs
Statistical Comparison of Multiple Algorithms in Multiple
Problems
A Package to Score Behavioral Questionnaires
Score Persons Using the Generalized Graded Unfolding Model
Quickly Score Models in Data Science and Machine Learning
SCORER 2.0: an algorithm for distinguishing parallel dimeric and
trimeric coiled-coil sequences
Scoring Rules for Parametric and Simulated Distribution
Forecasts
Inferring Developmental Chronologies from Single-Cell RNA
Sequencing Data
The Scott-Knott Effect Size Difference (ESD) Test
Implements the Scout Method for Covariance-Regularized
Regression
Tools for Scraping Data from HTML and XML Documents
Screen and clean variable selection procedures
Analysis of High-Dimensional Categorical Data such as SNP Data
Transcript-Based Unit Tests that are Easy to Create and Maintain
Simulating the Evolution of Biological Sequences
Performs Bayesian Variable Selection on the Covariates in a
Semi-Competing Risks Model
Diving Calculations and Decompression Models
Shrinkage Discriminant Analysis and CAT Score Variable Selection
Statistical Disclosure Control Methods for Anonymization of
Microdata and Risk Estimation
Methods for Statistical Disclosure Control in Tabular Data
Statistical Disclosure Control Substitution Matrix Calculator
Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome
Similarity Networks
Simulation and Inference for Stochastic Differential Equations
Synthesizing List of Differentially Expressed Features
Subgroup Discovery with Evolutionary Fuzzy Systems in R
Species Distribution Modelling Predictor Datasets
Species Distribution Modelling Tools: Tools for processing data
associated with species distribution modelling exercises
Create Virtual Species for Species Distribution Modelling
Scale-Dependent Hyperpriors in Structured Additive
Distributional Regression
Measures of Risk for the Compound Poisson Risk Process with
Diffusion
Semi-Definite Quadratic Linear Programming Solver
Spatially Balanced Sample Draws for Spatial Objects
Scenario Discovery Tools to Support Robust Decision Making
Tools for Custom Searches / Subsets / Slices of Named R Objects
Seasonal analysis and graphics, especially for climatology
Score Equity Assessment- summary index computation
Graphical User Interface for Seasonal Adjustment
Statistical Estimation of Cluster Parameters (SECP)
Sampling Design for Spatially Explicit Capture-Recapture
Share Sensitive Information in R Packages
Spatially Explicit Capture-Recapture for Linear Habitats
Access Data from the SeeClickFix Web API
Simulation of Evolutionary and Epidemiological Dynamics
reading and writing SEER*STAT data files
SEER and Atomic Bomb Survivor Data Analysis Tools
A Quick Way to Map U.S. Rates and Data of U. S. States,
Counties, Census Tracts, or Seer Registries using 2000 and 2010
U. S. Census Boundaries
Supplemental U. S. 2010 Census Tract Boundaries for 23 Eastern
States without Registries for 'SeerMapper'
Supplemental U. S. 2010 Census Tract Boundaries for 15 States
with Seer Registries for 'SeerMapper'
Supplemental U.S. 2010 Census Tract Boundaries for 14 Western
States without Seer Registries for 'SeerMapper'
Supplemental U. S. 2000 Census Tract Boundaries for 23 Eastern
States without Seer Registries
Supplemental U. S. 2000 Census Tract Boundary for 15 States with
Seer Registries for 'SeerMapper'
Supplemental U.S. 2000 Census Tract Boundaries for 14 Western
States without Seer Registries for 'SeerMapper'
A set of tools for measuring spatial segregation
Determine Event Boundaries in Event Segmentation Experiments
Regression Models with Break-Points / Change-Points Estimation
Predict Information Cascade by Self-Exciting Point Process
Fast Rolling Functions for Seismology using Rcpp
An Information About Deputies and Votings in Polish Diet from
Seventh to Eighth Term of Office
KoNLP static dictionaries and Sejong project resources
Determines Species Probabilities Based on Functional Traits
Analysis of Field and Laboratory Foraging
Correcting Biased Estimates Under Selection
A Tool for Calculation and Optimization of the Expected Gain
from Multi-Stage Selection
Estimation of Weight Functions in Meta Analysis
Translate CSS Selectors to XPath Expressions
Select Point Pattern Models Based on Minimum Contrast, AIC and
Goodness of Fit
R Client Implementing the W3C WebDriver Specification
Select Features Reliably with Cohen's Effect Sizes
Genotype Probabilities in Intermediate Generations of Inbreeding
Through Selfing
Regularization for Variable Selection in Model-Based Clustering
and Discriminant Analysis
Goodness-of-fit indexes for structural equation models
Hierarchical Models for Parametric and Semi-Parametric Analyses
of Semi-Competing Risks Data
Identifiability of Linear Structural Equation Models
Semi-Parametric Sample Selection Modelling with Continuous or
Discrete Response
Kernel PCA projection, and semi-supervised variant
Path Diagrams and Visual Analysis of Various SEM Packages'
Output
Structural Equation Modeling Using Partial Least Squares
Semiparametric Estimation of Stochastic Frontier Models
Useful Tools for Structural Equation Modeling
Recursive Partitioning for Structural Equation Models
Tool for sending interactive plots with tool-tip content
Sensitivity Analysis for Comparative Methods
Global Sensitivity Analysis of Model Outputs
Sensitivity Analysis for 2x2xk Tables in Observational Studies
Sensitivity Analysis for Case-Control Studies
Sensitivity Analysis for Full Matching in Observational Studies
Sensitivity Analysis for Observational Studies with Multiple
Outcomes
Sensitivity Analysis in Observational Studies
Sensitivity analysis using weighted M-statistics
Principal Stratification Sensitivity Analysis Functions
Analysis of Sensory and Consumer Data in a Mixed Model Framework
Test and Optimise Sampling Designs Based on Plume Simulations
Simultaneous Model-Based Clustering and Imputation via a
Progressive Expectation-Maximization Algorithm
Thurstonian Models for Sensory Discrimination
Sensitivity Analysis for Stratified Observational Studies
Maximum Likelihood Estimation and Likelihood Ratio Test
Functions for Separable Variance-Covariance Structures
Standard Evaluation Interfaces for Common 'dplyr' Tasks
Sequential Allocation for Prospective Experiments
Simulation and Group Sequential Monitoring of Randomized
Two-Stage Treatment Efficacy Trials with Time-to-Event
Endpoints
A Tool to Associate FASTA Sequences and Features
Simple GUI for Graph Based Visualization of Cluster of DNA
Sequence Reads
Hidden Markov Models for Life Sequences and Other Multivariate,
Multichannel Categorical Time Series
Biological Sequences Retrieval and Analysis
Network Module-Based Model in the Differential Expression
Analysis for RNA-Seq
Meta-Analysis of Region-Based Tests of Rare DNA Variants
Efficiently Read Sequence Data (VCF Format, BCF Format and METAL
Format) into R
Group Sequential Design Class for Clinical Trials
Generates a permutation matrix based upon a sequence
Simulation and visualization of restriction enzyme cutting
pattern from DNA sequences
Exact Sequential Analysis for Poisson and Binomial Data
Copy Number Estimation from Tumor Genome Sequencing Data
Tools to Transform and Query Data with 'Apache' 'Drill'
Infrastructure for Ordering Objects Using Seriation
Estimating Infection Rates from Serological Data
A Simple HTTP Server to Serve Static Files or Dynamic Documents
Spatially Explicit Structural Equation Modeling
Functions for interacting with, saving and restoring R sessions
Functions for Set-Theoretic Multi-Method Research and Advanced
QCA
Set (Normal) Random Number Generator and Seed
Sets, Generalized Sets, Customizable Sets and Intervals
Group Testing Procedures for Signal Detection and
Goodness-of-Fit
Calculates the historic date of extinction given a series of
sighting events
Advanced Methods for Stochastic Frontier Analysis
Constrained Triangulation for Simple Features
Sequential Full Factorial-Based Latin Hypercube Design
Straightforward Filtering Index for AP-MS Data Analysis (SFINX)
Utilities from 'Seminar fuer Statistik' ETH Zurich
Functions for Systems Factorial Technology Analysis of Data
Space Filling Based Tools for Data Mining
Spatial Graph Based Clustering Summaries for Spatial Point
Patterns
Stochastic Gradient Descent for Scalable Estimation
An Object-Oriented Framework for Geostatistical Modeling in S+
Fit a GLM (or cox model) with a combination of lasso and group
lasso regularization
An R package for power and boundary calculations in
pre-licensure vaccine trials using a sequential generalized
likelihood ratio test
Stochastic Gradient Markov Chain Monte Carlo
Student Growth Percentiles & Percentile Growth Trajectories
Sparse Generalized Principal Component Analysis
Sparse Group Partial Least Square Methods
Enrichment Analysis of CRISPR/Cas9 Knockout Screen Data
Random Partition Distribution Indexed by Pairwise Information
Functions for Plotting Graphical Shapes, Colors
Change-Point Estimation using Shape-Restricted Splines
Tools for Analyzing Planar Shape and Associated Patterns
Collection and Analysis of Otolith Shape Data
Shape Selection for Landsat Time Series of Forest Dynamics
Statistical Significance of the Sharpe Ratio
Models and Data Sets for the Study of Species-Area Relationships
Tools to Support the Sheffield Elicitation Framework
Bootstrap 2 Web Components for Use with Shiny
Add CSS Loading Animations to 'shiny' Outputs
Displays User Feedback Next to Shiny Inputs
A Server-Side File System Viewer for Shiny
Image Manipulation, with an Emphasis on Journaling
'jQuery UI' Interactions and Effects for Shiny
Easily Improve the User Experience of Your Shiny Apps in Seconds
Bootstrap Landing Home Pages for Shiny Applications
Implement Material Design in Shiny Applications
Creates an Executable Shortcut for Shiny Applications
Interactive Visual and Numerical Diagnostics and Posterior
Analysis for Bayesian Models
Functions to Minimize Bonehead Moves While Working with 'shiny'
SHrinkage covariance Incorporating Prior knowledge
Slope Heuristic for Block-Diagonal Covariance Selection in High
Dimensional Gaussian Graphical Models
Convert a SpatialLinesDataFrame Object to an 'igraph'-Class
Object
Global, Parameterwise and Joint Shrinkage Factor Estimation
The Shuffle Estimator for Explainable Variance
Systematic Identification of Bimodally Expressed Genes Using
RNAseq Data
Analysis of Single-Cell Viral Growth Curves
Subgroup Identification Based on Differential Effect Search
Substitution and Indel Distances to Infer Evolutionary
Relationships
Significant Variable Selection in Linear Regression
Perform Exact Sign Test and Asymptotic Sign Test in Large
Samples
Format Significance Summaries for Reports
Identify and Visualize Significantly Responsive Branches in a
Phylogenetic Tree
Calculate ANSI S3.5-1997 Speech Intelligibility Index
Genotype Simulations for Rare or Common Variants Using
Haplotypes from 1000 Genomes
A Collection of functions for similarity analysis of vegetation
data
Simultaneous Inference for Diversity Indices
Simulating Longitudinal Data with Causal Inference Applications
Simultaneous Comparisons for Multiple Endpoints
Safe Implementation of Monte Carlo Tests
Structure for Organizing Monte Carlo Simulation Designs
Simulation of Ecological (and Other) Dynamic Systems
Constrained Single Index Model Estimation
SIMEX- And MCSIMEX-Algorithm for Measurement Error Models
Simulate Models Based on the Generalized Linear Model
Simulated Survival and Hazard Analysis for Time-Dependent
Exposure
A Framework for Data-Driven Stochastic Disease Spread
Simulations
Simulate Somatic Mutations in Cancer Genomes from Mutational
Processes
Subnetwork Integration for Multi-Modal Signatures
Simulation of Event Histories for Multi-State Models
Simulation of Correlated Data with Multiple Variable Types
Statistical Inference for MOdular NEtworks (SIMoNe)
A Method for Simulating Data from Perturbed Biological Pathways
Tools for Simulating and Plotting Quantities of Interest
Estimated from Cox Proportional Hazards Models
Tools to Simulate Phenotype(s) with Epistatic Interaction
Simple Graph Data Types and Basic Algorithms
Set Up R Source Code Files for Use on Multiple Machines
Bayesian Inference and Sensitivity Analysis for Causal Effects
from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured
Confounding
Regression Analysis of Proportional Data Using Simplex
Distribution
Simulation of Synthetic Populations for Survey Data Considering
Auxiliary Information
Power Analysis for Generalised Linear Mixed Models by Simulation
Simulations to Predict the Number of RAD and GBS Loci
Linear Model Data Simulation and Design of Computer Experiments
Individual-Based, Spatially-Explicit Simulation and Analysis of
Multi-State Movements in River Networks, Homogeneous, and
Heterogeneous Landscapes
Tools for Simulation Studies in Parallel
'Simulates Univariate and Semi-Competing Risks Data Given
Covariates and Piecewise Exponential Baseline Hazards'
Nonparametric Simulation of RNA-Seq Data
Conduct Simulation Studies with a Minimal Amount of Source Code
Simulation process of 4 selection methods in predicting chemical
potent compounds
A Constrained L1 Minimization Approach for Estimating Multiple
Sparse Gaussian or Nonparanormal Graphical Models
A SINful Approach to Selection of Gaussian Graphical Markov
Models
An Enhanced Chart for Simple and Truthful Representation of
Single Observations over Multiple Classes
Create 'roxygen2' Skeleton with Information from Function Script
Sum of Independent Non-Identical Binomial Random Variables
Functions for Calculating Daily Solar Radiation and
Evapotranspiration
Supplementary Item Response Theory Models
Sparse Interval Sliced Inverse Regression
SISUS: Stable Isotope Sourcing using Sampling
Some Invalid Some Valid Instrumental Variables Estimator
Super Imposition by Translation and Rotation Growth Curve
Analysis
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header
Files
Format a number to a string with SI prefix
Sensitivity Indices with Dependent Inputs
Six Sigma Tools for Quality Control and Improvement
Estimating the Sizes of Populations at Risk of HIV Infection
from Multiple Data Sources Using a Bayesian Hierarchical Model
Data and Variable Transformation Functions
Data Visualization for Statistics in Social Science
Collection of Convenient Functions for Common Statistical
Computations
SNP-Set (Sequence) Kernel Association Test
Sparse (Multicategory) Kernel Discriminant Analysis
Densities and Sampling for the Skellam Distribution
The Skew Hyperbolic Student t-Distribution
The Skillings-Mack Test Statistic for Block Designs with Missing
Observations
Design of Experiments Suite: Generate and Evaluate Optimal
Designs
Search and Download Satellite Imagery using the SkyWatch API
Send Messages, Images, R Objects and Files to 'Slack'
Channels/Users
Estimation and Use of the Quantile-Based Skew Logistic
Distribution
Software for Analyzing Limiting Dilution Assays
Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd
Ed)"
Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd
Ed)"
Tools for Fitting Sparse Latent Factor Model
Maximin-Distance (Sliced) Latin Hypercube Designs
Selective Locally Linear Inference of Cellular Expression
Relationships
Create Interactive Carousels with the JavaScript 'Slick' Library
Singular Linear Models for Longitudinal Data
Sparse Linear Method to Predict Ratings and Top-N
Recommendations
A Slow Version of the Rapid Automatic Keyword Extraction (RAKE)
Algorithm
Discrete Prolate Spheroidal (Slepian) Sequence Regression
Smoothers
Smoothing methods for nonparametric regression and density
estimation
Sparse Multi-category Angle-Based Large-Margin Classifiers
Statistical Methods for the Analysis of Case-Control Point Data
Statistical Modeling of Animal Movements
Acquisition and Processing of NASA Soil Moisture Active-Passive
(SMAP) Data
Sparse Multivariate Analysis via Rank Transformation
Tools for Accessing Various Datasets Developed by the Foundation
SmarterPoland.pl
Online Unsupervised Outlier Detection Using Finite Mixtures with
Discounting Learning Algorithms
Fast and Robust Surrogate Variable Analysis
(Standardised) Major Axis Estimation and Testing Routines
Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
A simple Monte Carlo optimizer using adaptive coordinate
sampling
Smoothed minimax concave penalization (SMCP) method for
genome-wide association studies
Data Sets for Statistical Methods in Customer Relationship
Management by Kumar and Petersen (2012)
Utility functions for sequential Monte Carlo
Data to accompany Smithson & Merkle, 2013
R functions and data from Chapter 5 of 'Statistical Methods for
Financial Engineering'
SMfSB 2e: Stochastic Modelling for Systems Biology, second
edition
Provides two taxonomic coefficients from E. S. Smirnov
"Taxonomic analysis" (1969) book
Outlier Detection Using Statistical and Machine Learning Methods
Simulation and Estimation of Multi-State Discrete-Time
Semi-Markov and Markov Models
Soft Maximin Estimation for Large Scale Array-Tensor Models
Fitting Univariate Censored Regression Model Under the Family of
Scale Mixture of Normal Distributions
Single and Multi-Objective Optimization Test Functions
Smoothing of Two-Dimensional Demographic Data, Optionally Taking
into Account Period and Cohort Effects
Functions Relating to the Smoothing of Numerical Data
Estimation of Smooth Hazard Models for Interval-Censored Data
with Applications to Survival and Illness-Death Models
Smooth Hazard Ratio Curves Taking a Reference Value
Smoothed M-estimators for 1-dimensional location
Survival Regression with Smoothed Error Distribution
Smooth Estimation of GPD Shape Parameter
A Collection of Oversampling Techniques for Class Imbalance
Problem Based on SMOTE
Practicals for use with Davison (2003) Statistical Models
Datasets for Agresti and Finlay's "Statistical Methods for the
Social Sciences"
The Skew-Normal and Related Distributions, such as the Skew-t
Gadget N-body cosmological simulation code snapshot I/O
utilities
Snipping methods for robust estimation and clustering
Snowball stemmers based on the C libstemmer UTF-8 library
Easier cluster computing (based on snow)
Fault Tolerant Simple Network of Workstations
SNPs-based whole genome association studies
Maximally selected statistics for SNP data
Bivariate Gaussian Genotype Clustering and Calling for Illumina
Microarrays
Preparing Genotypic Datasets in Order to Run Genomic Analysis
Random Forest for SNPs to Prevent X-chromosome SNP Importance
Bias
Flexible writing of snpStats objects to flat files
Accessing, subsetting and plotting mouse SNPs
Standard and Nonstandard Statistical Models and Methods for Test
Equating
Memory management in R by delayed assignments
Sobol Sequences with Better Two-Dimensional Projections
Specific Correspondence Analysis for the Social Sciences
Tools for Collecting Social Media Data and Generating Networks
for Analysis
Generates social networks based on distance
Social Position Indicators Construction Toolbox
Functions and Examples for "Software for Data Analysis"
SODA: Main and Interaction Effects Selection for Logistic
Regression, Quadratic Discriminant and General Index Models
Optimal Discriminant Clustering(ODC) and Sparse Optimal
Discriminant Clustering(SODC)
Interfaz interactiva con fines didacticos
Making Sophisticated and Aesthetical Figures in R
Matrix Completion via Iterative Soft-Thresholded SVD
Training Multi-Layer Neural Network for Softmax Regression and
Classification
Tools to Analyze Soil Carbon Database Created by Powell Center
Working Group
A package to consistently represent soil properties along a soil
profile
Models of Soil Organic Matter Decomposition
Soil Spectroscopy Tools and Reference Models
Functions for Soil Texture Plot, Classification and
Transformation
Implementation of Parametric Formulas for Soil Water Retention
or Conductivity Curve
Solar Position Algorithm for Solar Radiation Applications
General-Purpose Optimisation With the Self-Organising Migrating
Algorithm
SOM Bound to Realize Euclidean and Relational Outputs
Controlling the Generalized Familywise Error Rate
Topological k-NN Classifier Based on Self-Organising Maps
Estimating Abundance of Clones from DNA fragmentation data
Data Sonification - Turning Data into Sound
Single Objective Optimization Benchmark Functions
Load Russian Economic Indicators from the Archive of Economic
and Social Data
Non-Parametric Estimation of the Off-Pulse Interval of a Pulsar
Sequential Optimal Designs for Two-Colour cDNA Microarray
Experiments
Estimation using Sequential Offsetted Regression
Static Adsorption Experiment Plotting and Analysis
Turns a data frame into an HTML file containing a sortable
table
Search Contributed R Packages, Sort by Package
An R client for the OGC Sensor Observation Service
United States Presidential State of the Union Addresses
Stochastic Ordering Using Permutations (and Pairwise
Comparisons)
Fits a Non-Parametric Bayesian Source Attribution Model
Tools for Reading, Tokenizing and Parsing R Code
Soybean Nested Association Mapping Dataset
Design and Simulation of seamless Phase II-III Clinical Trials
Implements The Sequential Predictions Algorithm
SPA3G: R package for the method of Li and Cui (2012)
A Program to Estimate Animal Abundance and Density using
Bayesian Spatially-Explicit Capture-Recapture Models
Sparse conditional graph estimation with joint additive models
Classes and Methods for Spatio-Temporal Data
Spatial and Phylogenetic Analysis of Community Diversity
Spatially Weighted Context Data for Multilevel Modelling
Spherical Projections of Astronomical Data
Species-Richness Prediction and Diversity Estimation with R
Develop and Run Spatially Explicit Discrete Event Simulation
Models
Development Tools for 'SpaDES' and 'SpaDES' Modules
Core Utilities for Developing and Running Spatially Explicit
Discrete Event Simulation Models
Additional Tools for Developing Spatially Explicit Discrete
Event Simulation (SpaDES) Models
64-Bit Extension of the SPArse Matrix R Package 'spam'
Mixed-Effect Models, Particularly Spatial Models
Perform rare variants association analysis based on summation of
partition approaches
Perform sparse hierarchical clustering and sparse k-means
clustering
Read in 'SAS' Data ('.sas7bdat' Files) into 'Apache Spark'
Sparklines and Graphical Tables for TeX and HTML
Spatial and Spatiotemporal Relative Risk
Sparse Biclustering of Transposable Data
Learning Sparse Bayesian Networks from High-Dimensional Data
Utilities for Learning Sparse Bayesian Networks
Sparse and Regularized Discriminant Analysis
Scaling Count and Binary Data with Sparse Factor Analysis
Functional Linear Mixed Models for Irregularly or Sparsely
Sampled Data
Sparse Learning Algorithms Using a LASSO-Type Penalty for
Coefficient Estimation and Model Prediction
RcppEigen back end for sparse least trimmed squares regression
Multivariate Normal Functions for Sparse Covariance and
Precision Matrices
Fit sparse linear regression models via nonconvex optimization
Sparse Bayesian Models for Regression, Subgroup Analysis, and
Panel Data
Sparse-aware Maximum Likelihood for Structural Equation Models
Sparse Truncated Singular Value Decomposition (from 'SVDLIBC')
Solution Paths of Sparse Linear Support Vector Machine with
Lasso or ELastic-Net Regularization
Sparse Time Series Chain Graphical Models
A Package for Sparse VAR/VECM Estimation
Simulation Parameter Analysis R Toolkit ApplicatioN: Spartan
Study Planning and Adaptation of Sample Size
Spatio-Temporal Modeling of Large Data Using a Spectral SPDE
Approach
Score Test Based on Saddlepoint Approximation
Graph Edge Computations for Spatial Point Patterns
Functions for Kriging and Point Pattern Analysis
Spatial Clustering using Fuzzy Geographically Weighted
Clustering
Computation of Spatial Covariance Matrices for Data on
Rectangles
Methods and Data for Spatial Epidemiology
A Shiny Web Application for the Analysis of Spatial and
Spatio-Temporal Disease Data
Application of 2D Convolution Kernel Filters to Matrices or 3D
Arrays
Hierarchical spatial generalized extreme value (GEV) modeling
with Bayesian Model Averaging (BMA)
Non-Parametric Estimation of Spatial Segregation in a
Multivariate Point Process
Performs spatial NBDA in a Bayesian context
Multivariate Nonparametric Methods Based on Spatial Signs and
Ranks
Segregation Measures for Multitype Spatial Point Patterns
Estimation of spatial tail dependence models
R functions for working with spatial data
Model-Based Clustering of Spatio-Temporal Data
Regularized Spatial Maximum Covariance Analysis
Regularized Principal Component Analysis for Spatial Data
Spatial Analysis of Field Trials with Splines
Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Extension to 'spatstat' for Local Composite Likelihood
Bayesian Spatial Survival Analysis with Parametric Proportional
Hazards Models
Univariate and Multivariate Spatial-Temporal Modeling
Bayesian Modeling and Analysis of Spatially Correlated Survival
Data
Statistical Process Control -- Collection of Some Useful
Functions
Statistical Process Control for Stochastic Textured Surfaces
Functions for Calibrating Control Charts
A New Reduced-Rank Linear Discriminant Analysis Method
Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Sparse Estimation of a Covariance Matrix
Spatial Dependence: Weighting Schemes, Statistics and Models
Spatial Downscaling Using Bias Correction Approach
Data Manipulation Verbs for the Spatial Classes
Spatio-Dynamic Wetland Plant Communities Model
Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment,
Peak Based Processing, Quantitative Analysis and Visualizations
A Data Specification Format and Interface
Alternative spectral clustering, with automatic estimation of k
Statistical package for species richness estimation
Prepare Species Distributions for the Use in Phylogenetic
Analyses
Specificity of personality trait-outcome (or trait-trait)
associations
Metabolomics and Spectral Data Analysis and Mining
Forecast Verification Routines for Ensemble Forecasts of Weather
and Climate
Common Methods of Spectral Data Analysis
Approximate Gaussian Processes Using the Fourier Basis
Singular Spectrum Analysis (SSA) Tools for Time Series Analysis
Spectra Visualization, Organizer and Data Preparation
Class and Methods for Hyperspectral Data
Estimation of the Relative Importance of Factors Affecting
Species Distribution Based on Stability Concept
Fitting Linear and Generalized Linear Models to Large Data Sets
Semiparametric efficient estimation for a two-sample treatment
effect
Calculation of the Standardised Precipitation-Evapotranspiration
Index
Correct the Spelling of a Given Word in the English Language
Auxiliary Functions to Estimate Centers of Biodiversity
Perform Spatial Error Estimation and Variable Importance in
Parallel
Spatial Extent as Polygons with Projection
Pre-Processing and Analysis of Mid-Infrared Spectral Region
Interface Between GRASS 6+ Geographical Information System and R
Statistical Patterns in Genomic Sequences
Numerical Integration over Spheres and Balls in n-Dimensions;
Multivariate Polar Coordinates
Estimation of spatial autoregressive models with and without
heteroskedastic innovations
A Genetic-Based Assay for the Identification of Cell Lines
Compute SPI Index using the Methods Genetic Algorithm and
Maximum Likelihood
Detecting Election Fraud from Irregularities in Vote-Share
Distributions
Prediction and variable selection using spike and slab
regression
Bayesian Variable Selection and Model Choice for Generalized
Additive Mixed Models
Sparse Generative Model and Its EM Algorithm
Spatial and Space-Time Point Pattern Analysis
Tools to Work with the 'Splash' 'JavaScript' Rendering and
Scraping Service
Combined Evaluation and Split Access of Functions
Calculate Task Split Half Reliability Estimates
Stack and Reshape Datasets After Splitting Concatenated Values
Econometric Models for Spatial Panel Data
Sparse Partial Least Squares (SPLS) Regression and
Classification
Wrapper Functions for 'SPM' (Statistical Parametric Mapping)
Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'
Semiparametric Maximum Likelihood Method for Interactions
Gene-Environment in Case-Mother Control-Mother Designs
Moran's Eigenvector-Based Spatial Regression Models
Spatial Regression Models for Large Datasets using Nearest
Neighbor Gaussian Processes
Interface to Species Occurrence Data Sources
Transform a Movie into a Synthetic Picture
Semiparametric proportional odds rate model
Combining Different Spatial Datasets in Cancer Risk Estimation
Modeling Spatial Poisson and Related Point Processes
Sparse Arrays and Multivariate Polynomials
Statistical Package for Reliability Data Analysis
Selecting a Predictive Function for a Given Gene Expression Data
Calculate Species Richness and Extrapolation Metrics
Framework for Screening Prognostic Interactions
Sparse and Non-Sparse Partial Robust M Regression and
Classification
Wald's Sequential Probability Ratio Test
Optimization of Sample Configurations using Spatial Simulated
Annealing
Selecting Spatial Scale of Covariates in Regression Models
Shape-Preserving Uni-Variate and Bi-Variate Spline Interpolation
Site Percolation on Square Lattice (SPSL)
Spatially Varying and Spatio-Temporal Dynamic Linear Models
Constrained Spatiotemporal Mixed Models for Exposure Estimation
Nonparametric Hypothesis Tests of Isotropy and Symmetry
Functions for Spatial Thinning of Species Occurrence Records for
Use in Ecological Models
Spatio-Temporal Bayesian Modelling Using R
Functions and Datasets for "Introduction to Scientific
Programming and Simulation Using R"
Rendering Parameterized SQL and Translation to Dialects
Utilities for Generating SQL Queries from Model Objects
Squared Extrapolation Methods for Accelerating EM-Like Monotone
Algorithms
Color-Based Plots for Multivariate Visualization
Statistical Quantification of Individual Differences
Statistical Ranking Color Scheme for Multiple Pairwise
Comparisons
Nonparametric Smooth ROC Curves for Continuous Data
The Stepwise Response Refinement Screener (SRRS)
'dplyr'-Like Syntax for Summary Statistics of Survey Data
Fisheries Stock Assessment Simulation Testing with Stock
Synthesis
Sample Size Adjusted for Nonadherence or Variability of Input
Parameters
Statistics Norway's Miscellaneous Small Tools
Robust Correlation Estimation and Testing Based on Spatial Signs
Sample Size Determination (SSD) for Unordered Categorical Data
Tools Developed for Structured Sufficient Dimension Reduction
(sSDR)
Fitting of parametric models using summary statistics
Local and remote system commands with output and error capture
Sample Size Calculations for Microarray Experiments
Sample Size Calculation for RNA-Seq Experimental Design
Fit and Analyze Smooth Supersaturated Models
Skew Scale Mixtures of Normal Distributions
Robust estimation and inference in sample selection models
Scale-Shape Mixtures of Skew-Normal Distributions
Estimating Hidden Population Size using Respondent Driven
Sampling Data
Two-dimensional sociometric status determination with rating
scales
Sample Size Calculation using Restricted Mean Survival Time
Tools for Importing Files in the Triple-s (Standard Survey
Structure) Format
Fitting Semi-Parametric log-Symmetric Regression Models
Shrinkage t Statistic and Correlation-Adjusted t-Score
Probability Functions and Generalized Regression Models for
Stable Distributions
Estimate the Four Parameters of Stable Laws using Different
Methods
Stable Specification Search in Structural Equation Models
Stylized concatenation of data.frames or ffdfs
'ODBC' Connection Class for Package stacomiR
Mixture of Two-Stage Logistic Regressions with Fixed Candidate
Knots
Modelling the Population Dynamics of a Stage-Structured Species
in Continuous Time
Statistical Analysis of Mixed Ploidy Populations
Spatial Temporal Analysis of Moving Polygons
Tools for Standardizing Variables for Regression in R
Well-Formatted Regression and Summary Statistics Tables
Modelling Space Time AutoRegressive Moving Average (STARMA)
Processes
Population Structure Model Inference and Visualisation
Single to Double Arm Transition Design for Phase II Clinical
Trials
Automatically Retrieve Multidimensional Distributed Data Sets
Tools Inspired by 'Stata' to Manipulate Tabular Data
Statistical Analysis of Chemistry, Histopathology, and
Reproduction Endpoints Including Repeated Measures and
Multi-Generation Studies
Extract Statistics from Articles and Recompute p Values
Statistical Complexity and Information Measures for Time Series
Analysis
Statistical Analysis for Environmental Data
U.S. State Cartogram Heatmaps in R; an Alternative to Choropleth
Maps for USA States
Shapefiles for the Contiguous United States of America
Get Hourly Meteorological Data from Global Stations
Functions for Teaching Statistical Modeling
Easy Data Manipulation, Data Quality and Statistical Checks
Software Tools for the Statistical Analysis of Network Data
Common R Scripts and Utilities Used by the Statnet Project
Software
A Graphical User Interface for Network Modeling with 'Statnet'
Statistical Tools for Social Network Analysis
Statistical Performance Measures to Evaluate Covariance Matrix
Estimates
Quotes on Statistics, Data Visualization and Science
Statistical Rank Aggregation: Inference, Evaluation, and
Visualization
A Wrapper for the API of Statistics Denmark
Calculate the Standardized Difference for Numeric, Binary and
Category Variables
ICA and Tests of Independence via Multivariate Distance
Covariance
Testing Steepness of Dominance Hierarchies
Semi-Parametric Stein-Like Estimator with Instrumental Variables
Subpopulation Treatment Effect Pattern Plot (STEPP)
Stepwise Forward Variable Selection in Penalized Regression
L2 penalized logistic regression with a stepwise variable
selection
Step-Wise Signal Extraction via Marginal Likelihood
Stepwise detection of recombination breakpoints
Multiple Testing Method to Control Generalized Family-Wise Error
Rate and False Discovery Proportion
Stereo Camera Calibration and Reconstruction
Klimontovich's S-Theorem Algorithm Implementation and Data
Preparation Tools
Calculation of the Standardized Temperature Index
Fits Stickbreaking, Multiplicative and Additive Models to Data
Persist Attributes Across Data Operations
Separable Gaussian Process Interpolation (Emulation)
Stineman, a consistently well behaved method of interpolation
Enhanced Seasonal Decomposition of Time Series by Loess
Estimation of the Structural Topic Model
A Tool for Structural Topic Model Visualizations
Rapid and Accurate Genetic Prediction Modeling for Genome-Wide
Association or Whole-Genome Sequencing Study Data
Shiny Application for Creating STM Models
Plots a QQ-Norm Plot with several Gaussian simulations
Fit a Spatial Occupancy Model via Gibbs Sampling
Stochastic Profiling using Maximum Likelihood Estimation
Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Real-Time Stock Price & Volume in China Market
Fast Functions for Stock Market Analysis
R Functions for Solving Stoichiometric Equations
Write Storm Bolts in R using the Storm Multi-Language Protocol
Stochastic Simulator for Reliability Modeling of Repairable
Systems
Selection of Training Populations by Genetic Algorithm
Stochastic Process Model for Analysis of Longitudinal and
Time-to-Event Outcomes
Perform residual analysis on space-time point process models
Stratigraphic Tree Analysis for Palaeontology
An Implementation of the Stratification Index
Summaries and Population Structure Analyses of Genetic Data
Optimal Stratification in Stratified Sampling
Generic Framework to Analyze Trading Strategies
Univariate Stratification of Survey Populations
Performs Stratified Covariate Balancing for Data with Discrete
and Continuous Outcome Variables
Builds Trees by Sampling Variables in Groups
Optimal Stratification in Stratified Sampling Optimization
Algorithm
Calculate Single Station Metabolism from Diurnal Oxygen Curves
Interface for MOA Stream Clustering Algorithms
Streamlined Estimation of Survival for Static, Dynamic and
Stochastic Treatment and Monitoring Regimes
Fetch and plot financial stress index and component data
Computation and Estimation of Reliability of Stress-Strength
Models
Approximate String Matching and String Distance Functions
PPI and Gaussian Network Construction from Transcriptomic
Analysis Results Integrating a Multilevel Factor
Simple, Consistent Wrappers for Common String Operations
Structured Trellis Displays Without Strips for Lattice Graphics
R Codes and Datasets for Generalized Linear Mixed Models: Modern
Concepts, Methods and Applications by Walter W. Stroup
Testing, Monitoring, and Dating Structural Changes
False Discovery Control Procedure Integrating the Prior
Structure Information
Multiple Testing for Hypotheses with Hierarchical or Group
Structure
STRUctural Modeling of Latent Variables for General Pedigree
Process Control and Internal Validation of Forensic STR Kits
Class and Methods for Structural Time Series Models
Student's t Vector Autoregression (StVAR)
Functions for a Variety of Stylometric Analyses
Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures
Detect Subgroup with an Enhanced Treatment Effect
Methods for exploring treatment effect heterogeneity in subgroup
analysis of clinical trials
Patient Subgroup Identification for Clinical Drug Development
Gene selection using Lasso for Microarray data with user-defined
genes fixed in model
Automatic Lesion Incidence Estimation and Detection using
Multi-Modality Longitudinal Magnetic Resonance Images
Within Outlying Mean Indexes: Refining the OMI Analysis
Identify Metabolic Subpathways Mediated by MicroRNAs
Identify Signal Subpathways Competitively Regulated by LncRNAs
Based on ceRNA Theory
Unconstrained Optimization using the Subplex Algorithm
Computes Copula using Ranks and Subsampling
Computing Subscores in Classical Test Theory and Item Response
Theory
Systematic Screening of Study Data for Subgroup Effects
An Ensemble Method for Combining Subset-Specific Algorithm Fits
Subgroup Specific Optimal Dose Assignment
Cluster analysis to find molecular subtypes and their assessment
Visual Exploration of Protein Alignments Resulting from Multiple
Substitution Matrices
Tools for Making and Spoiling Sudoku Games
Supporting Graphs for Analysing Time Series
Easy Calculation and Visualisation of Confidence Intervals
Dataframe Summaries, Frequency Tables and Descriptive Stats with
Various Output Formats
'Htmlwidget' for 'Kerry Rodden' 'd3.js' Sequence Sunburst
Compute Sun Position, Sunlight Phases, Moon Position and Lunar
Phase
The Self-Updating Process Clustering Algorithms
Supervised Clustering of Predictor Variables such as Genes
Generating Robust Biclusters from a Bicluster Set (Ensemble
Biclustering)
R Code for Testing Markov Chain Nonconvergence
Exact Test and Visualization of Multi-Set Intersections
Superfast Likelihood Inference for Stationary Gaussian Time
Series
A Graphical Tool for Exploring Complex Datasets Using Heatmaps
Implements the supervised multidimensional scaling (superMDS)
proposal of Witten and Tibshirani (2011)
Supervised Classification Learning and Prediction using Patient
Rule Induction Method (PRIM)
Basic Functions for Supporting an Implementation of Best-Worst
Scaling
Basic Functions for Supporting an Implementation of Case 2
Best-Worst Scaling
Basic Functions for Supporting an Implementation of Choice
Experiments
Calculates Likelihood Support Intervals for Common Data Types
Surrogate Residuals for Ordinal and General Regression Models
Fitting Hansen Models to Investigate Convergent Evolution
Evaluation of Surrogate Endpoints in Clinical Trials
Evaluation of Failure Time Surrogate Endpoints in Individual
Patient Data Meta-Analyses
LaTeX descriptive statistic reporting for survey data
Inference for Model-Free Between-Group Parameters for Censored
Survival Data
Estimate accuracy measures for risk prediction markers from
survival data
Estimators of prediction accuracy for time-to-event data
Two-Sample Tests Based on Differences of Kaplan-Meier Curves
C-statistics for risk prediction models with censored survival
data
Discrete Time Survival and Longitudinal Data Analysis
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Tools for the Bootstrap with Survey Data
Generate a Survey that can be Completed by Survey Respondents
The Gini concentration test for survival data
Survival Analysis in Health Economic Evaluation
IDI and NRI for comparing competing risk prediction models with
censored survival data
Inference and Prediction in an Illness-Death Model
Continuous Biomarker Assessment by Exhaustive Survival Analysis
Penalised Maximum Likelihood for Survival Analysis Models
Time-dependent ROC curve estimation from censored survival data
Survival Prediction by Joint Analysis of Microarray Gene
Expression Data
Analysis of Proportional Hazards Model with Sparse Longitudinal
Covariates
Miscellaneous Functions for Survival Data
Presmoothed Estimation in Survival Analysis
Survival analysis for recurrent event data
Weibull Regression for a Right-Censored Endpoint with
Interval-Censored Covariate
Simulation of Simple and Complex Survival Data
Power Calculations for SNP Studies with Censored Outcomes
Compute Targeted Minimum Loss-Based Estimates in Right-Censored
Survival Settings
Forecasting Data using Alpha-Sutte Indicator
Measures of the Sturdiness of Regression Coefficients
Surrogate variable analysis using partial least squares in a
gene expression study
2d and 3d Space-Varying Coefficient Models
Interfaces to Various State-of-Art SVD and Eigensolvers
SciViews GUI API - Dialog boxes using Tcl/Tk
R 'Htmlwidget' to Add Pan and Zoom to Almost any R Graphic
SciViews GUI API - Functions to manage GUIs
3D Animated Interactive Visualizations Using SVG
SciViews GUI API - IDE and code editor functions
SciViews GUI API - Functions to interface with Komodo Edit/IDE
Linear/Nonlinear SVM Classification Solver Based on ADMM and
IADMM Algorithms
SciViews GUI API - Miscellaneous functions
Causal Effect Estimation and Diagnostics with Support Vector
Machines
SciViews GUI API - Tools (wrapper for packages tools and
codetools)
Nomograms for Right-Censored Outcomes from Survey Designs
A package for complex surveys including plausible values
Visualization, Analysis and Adjustment of High-Dimensional Data
in Respect to Sample Annotations
A Null Model Adapted to Abundance Class Data in Ecology
Ensemble Learning Algorithms Based on Support Vector Machines
A multi-OS implementation of the TAMU SWAT model
Stepped Wedge Cluster Randomized Trial (SW CRT) Design
Utilities for Sweave Together with TeX 'listings' Package
Miscellaneous Functions for Southwest Fisheries Science Center
Air Quality Data of Switzerland for one year in 30 min
Resolution
Switching nonparametric regression models for a single curve and
functional data
Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Publish Package Manifests to GitHub Gists
Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Cost Constrained FLux Balance Analysis: MetabOlic Modeling with
ENzyme kineTics (MOMENT)
Dynamic FBA : Dynamic Flux Balance Analysis
Using Gene Expression Data to Improve Flux Balance Analysis
Predictions
Syllable Counting and Readability Measurements
A Small Collection of Syllable Counting Functions
Hyphenation and Syllable Counting for Text Analysis
Symbolic central and noncentral moments of the multivariate
normal distribution
Framework for the Analysis of Genomic Prediction Data using R
Methods for computing spatial, temporal, and spatiotemporal
statistics
Subsample Temporal Data to Synchronal Events and Compute the MCI
A Synchronized Tausworthe RNG for R and Python
SYNCSA - Analysis of functional and phylogenetic patterns in
metacommunities
Interface to The Synergizer service for translating between sets
of biological identifiers
Inference and Analysis of Sympatry Networks
Synthetic Likelihood methods for intractable likelihoods
Synthetic RNA-Seq Network Generation and Mutual Information
Estimates
Synthetic Control Group Method for Comparative Case Studies
Synthetic Microdata and Spatial MicroSimulation Modeling for ACS
Data
Generating Synthetic Versions of Sensitive Microdata for
Statistical Disclosure Control
Estimating Systems of Simultaneous Equations
Extracts Sentiment and Sentiment-Derived Plot Arcs from Text
Functions for Applying the T^2-Test for Equivalence
Functions for Creating Summary Tables for Statistical Reports
Write Formatted Tables in Excel Workbooks
Exports Reproducible Summary Tables to Multi-Tab Spreadsheet
Files (.xls or .xlsx)
Combines 'data.table' and 'matrix' Classes
Create 'Table 1' to Describe Baseline Characteristics
Represents tables as semi-graphic displays
Tableplot, a Visualization of Large Datasets
Tabplotd3, interactive inspection of large data
Helpers for Data Analysis and Presentation Focused on Undergrad
Psychology
Minimum Distance Estimation of Tail Dependence Models
Estimate the Probability in the Upper Tail of the Aggregate Loss
Distribution
A Two-Stage Approach to Maximize Interpretability of Drug
Response Models Based on Multiple Molecular Data Types
Time Course Analysis of Variance for Microarray
Flexible Tree Taper Curves Based on Semiparametric Mixed Models
Bayesian Modeling of Autoregressive Threshold Time Series Models
Replicate Tariff Method for Verbal Autopsy
Collection of utility and convenience functions
Schedule R Scripts and Processes with the Windows Task Scheduler
Earthquake Traveltime Calculations for 1-D Earth Models
Efficient Computation and Testing of the Bergsma-Dassios Sign
Covariance
Clean Covariance Matrices Using Random Matrix Theory and
Shrinkage Estimators for Portfolio Optimization
Taxonomic Information from Around the Web
Tools for Working with 'Taxonomic' Databases
Functions to Work with NCBI Accessions and Taxonomy
Taxonomic Standardization of Plant Species Names
Functions for tuberculosis diagnostics research
Tree Branches Evaluated Statistically for Tightness
Convert Tibbles or Data Frames to Xts Easily
Survival Analysis using a Transform-Both-Sides Model
Simple TCGA Data Access for Integrated Statistical Analysis in R
Retrieve Genomic and Clinical Data from TCGA
Time-Course Gene Set Analysis for RNA-Seq Data
Client for the Cancer Imaging Archive REST API
Data from the 2010 Tourism Forecasting Competition
Advanced Data Analysis of Immune Receptor Repertoires
Statistical Tools for Topological Data Analysis
Analyze High-Dimensional Data Using Discrete Morse Theory
A Boosted Tweedie Compound Poisson Model
Gene Network Inference from Time-Series Transcriptomic Data
Time-Domain Deconvolution of Seismometer Response
Granier's Sap Flow Sensors (TDP) Analysis
Nonparametric Estimation of Time-Dependent ROC Curve from Right
Censored Survival Data
Apps for Teaching Statistics, R Programming, and Shiny App
Development
Demonstrations for Teaching and Learning
Selection of Samples and Parameter Estimation in Finite
Population
Fits neural networks to learn about back propagation
Turbulence Time Series Event Detection and Classification
An Implementation of the Typicality and Eccentricity Data
Analysis Framework
Trimmed Elemental Estimation for Linear Models
Model-Based Clustering and Classification with the Multivariate
t Distribution
Social Representation Theory Application: The Free Evocation of
Words Technique
Methods for Temporal Disaggregation and Interpolation of Time
Series
Advanced tensors arithmetic with named indices
Blind Source Separation Methods for Tensor-Valued Observations
Covariance Inference and Decompositions for Tensor Datasets
Test for A+B Traditional Escalation Rule
Fit, Simulate and Diagnose Models for Network Evolution Based on
Exponential-Family Random Graph Models
Visualisation, verification and calibration of ternary
probabilistic forecasts
Diversification Rate Estimation and Fast Simulation of
Reconstructed Phylogenetic Trees under Tree-Wide
Time-Heterogeneous Birth-Death Processes Including
Mass-Extinction Events
A Hypothesis Testing Framework for Validating an Assay for
Precision
Missing Item Responses Imputation for Test and Assessment Data
Tests and checks characteristics of R objects
Test Functions for Simulation Experiments and Evaluating
Optimization and Emulation Algorithms
Bootstrap Test for Similarity of Dose Response Curves Concerning
the Maximum Absolute Deviation
GUI for Entering Test Items and Obtaining Raw and Transformed
Scores
Statistical tests to compare two survival curves with recurrent
events
Satisfaction Analysis using Tetraclasse Model and Llosa Matrix
Treatment Effect eXplorer for Microbial Ecology eXperiments
(using Sequence Counts)
Compile and Preview Snippets of 'LaTeX' in 'RStudio'
Conversion of R Regression Output to LaTeX or HTML Tables
Functions for Text Mining and Topic Modeling
Integration of Text Mining and Topic Modeling Packages
Textual Data Analysis Package used by the TXM Software
n-Gram Text Regression, aka Concise Comparative Summarization
Detect Text Reuse and Document Similarity
Text Processing for Small or Big Data Files
Technology Forecasting using DEA (Data Envelopment Analysis)
Efficient and Accurate P-Value Computation for Position Weight
Matrices
The Standard Distribution Functions for the Truncated
Generalised Gamma Distribution
Binary Regressions under Independent Student-t Priors
Find Out Who Maintains the Packages you Use
Exploring Thematic Structure and Predicted Functionality of 16s
rRNA Amplicon Data
Temperature Measurement with Thermocouples, RTD and IC Sensors
Design and Analysis of Clinical Non-Inferiority or Superiority
Trials with Active and Placebo Control
Thresholded variable selection and prediction based on
estimating equations
ML Estimator for Baseline-Placebo-Treatment (Three-Group)
Experiments
Interactive 3D Scatter Plots, Networks and Globes
Represent Precise Coordinates in Three Words
Threshold Regression for Interval-Censored Data with a Cure Rate
Option
Threshold Selection and Uncertainty for Extreme Value Analysis
Three-Stage Least Squares Estimation for Systems of Simultaneous
Equations
Execution Functions for Tick Data Back Test
Functions for timing R scripts, as well as implementations of
Stack and List structures
Create dynamic reports using a TiddlyWiki template
Tide Analysis and Prediction of Predominantly Semi-Diurnal Tides
Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Tidy Verbs for Dealing with Genomic Data Frames
A Grammar for Turning 'JSON' into Tidy Tables
Easily Tidy Data with 'spread()' and 'gather()' Functions
Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
Easily Install and Load 'Tidyverse' Packages
Pre-Process of Time Series Data Set in R
R Tools for Inferring New Immunoglobulin Alleles from Rep-Seq
Data
Load Census TIGER/Line Shapefiles into R
Hidden Markov Models for ChIP-on-Chip Analysis
Characterization of functional genes in complex microbial
communities using tiling DNA microarrays
Variable Selection via Tilted Correlation Screening Algorithm
Survival and Competing Risk Analyses with Time-to-Event Data as
Covariates
Rmetrics - Chronological and Calendar Objects
Time Delay Estimation for Stochastic Time Series of
Gravitationally Lensed Quasars
Timeline and Time Duration-Related Tools
Time-ordered and time-aggregated network analyses
Flexible Regression Models for Survival Data
Time-Dependent ROC Curve and AUC for Censored Survival Data
Bootstrap computations for time series objects
Detecting Differentially Expressed Genes in Time Course RNA-Seq
Data
Rmetrics - Financial Time Series Objects
Manage Time Series with R and PostgreSQL
A Tool Kit for Working with Time Series in R
Seasonal/Sequential (Instants/Durations, Even or not) Time
Series
Interface to the TimeTree of Life Webpage
Create Interactive Timeline Visualizations in R
Target Inhibition Interaction using Maximization and
Minimization Averaging
Fitting Separable Nonlinear Models in Spectroscopy and
Microscopy
Time Series Analysis and Control Package
A Universal Non-Uniform Random Number Generator
Using Tip Dates with Phylogenetic Trees in BEAST (Software for
Phylogenetic Analysis)
Automated measure-based classification for flint tools
Enhanced Tipping Point Displays the Results of Sensitivity
Analyses for Missing Data
Titration analysis for mass spectrometry data
Acid/Base, Complexation, Redox, and Precipitation Titration
Curves
Pairwise Distance Estimation with TKF91 and TKF92 Model
Non-Convex Optimization and Statistical Inference for Sparse
Tensor Graphical Models
Effects under Linear, Logistic and Poisson Regression Models
with Transformed Variables
Linear Student-t Mixed-Effects Models with Censored Data
Calculate TL-Moments and Convert Them to Distribution Parameters
Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Targeted Maximum Likelihood Estimation for Network Data
Targeted Learning of a NP Importance of a Continuous Exposure
Feature Set Enrichment Analysis for Metabolomics and
Transcriptomics
Import texts from files in the Alceste format using the tm text
mining framework
Import Articles from 'Europresse' Using the 'tm' Text Mining
Framework
Import Articles from 'Factiva' Using the 'tm' Text Mining
Framework
Import Articles from 'LexisNexis' Using the 'tm' Text Mining
Framework
Retrieve Structured, Textual Data from Various Web Sources
Truncated Multivariate Normal and Student t Distribution
Temporal Network Autocorrelation Models (TNAM)
Temporal Network Centrality (TNC) Measures
Software for Analysis of Weighted, Two-Mode, and Longitudinal
Networks
Identification of Conditionally Essential Genes in Transposon
Sequencing Studies
Big Data in-Database Analytics that Scales with Teradata Aster
Distributed Platform
Total Operating Characteristic Curve and ROC Curve
A Consistent Interface to Tokenize Natural Language Text
Fundamental Definitions and Utilities of the Time Oriented
Language (TOL)
Statistical Tolerance Intervals and Regions
Inference, Aggregation and Visualization for Top-K Ranked Lists
Implementation of the hydrological model TOPMODEL in R
Gene Set Analysis Exploiting Pathway Topology
TOPSIS method for multiple-criteria decision making (MCDM)
Instrumental Variables Two Stage Least Squares estimation
Two One-Sided Tests (TOST) Equivalence Testing
Tools of Utilization and Cost in Healthcare
Bootstrap Methods for 'ToxCast' High Throughput Screening Data
Experimental design for binary toxicity tests
Estimation and Inference of Two-Way pAUC, pAUC and pODC
A Novel Topology-Based Pathway Enrichment Analysis Approach
Estimation of Transition Probabilities for the Illness-Death
Model
Estimation of Transition Probabilities in Multistate Models
A Tool for Downloading Functional Traits Data for Plant Species
Infrastructure for Running and Cycling Data from GPS-Enabled
Tracking Devices
Reconstruct animal tracks from magnetometer, accelerometer,
depth and optional speed data
Read, Manipulate and Visualise Magnetic Resonance Images
Tree Ring Analysis of Disturbance Events in R
Trades, Curves, Rating Tables, Add-on Tables, CSAs
An interface for creating GUIs modeled in part after traits UI
module for python
A Predictive Model for Trait Based Community Assembly of Plant
Species
Trajectory Miner: a Toolbox for Exploring and Rendering
Sequences
'TRFLP' Analysis and Matching Package for R
Automated Transcription of Audio Files Through the HP IDOL API
Bindings for the Google and Microsoft Translation APIs
Toolset for Translating SPSS-Syntax to R-Code
R Manuals Literally Translated in Korean
Fit Linear Transformation Models for Right Censored Data
Implementation of Transportation Problem Algorithms
Estimating a Survival Distribution in the Presence of Dependent
Left Truncation and Right Censoring
Sensitivity Analysis for Causal Inference
Discovery, Access and Manipulation of 'TreeBASE' Phylogenies
Hierarchical Multinomial Processing Tree Modeling
Numerical Calibration of Proxy-Climate Relationships
Centre of Mass Assessment and Consolidation of Trees
An Adaptive Multi-Scale Basis for High-Dimensional, Sparse and
Unordered Data
Phylogenetic Tree Manipulation Class and Methods
Estimating birth and death rates based on phylogenies
Exact and Asymptotic K Sample Permutation Test
'dplyr' Functionality for Matched Tree and Data Objects
Simulating Phylogenetic Trees under General Bellman Harris and
Lineage Shift Model
Statistical Exploration of Landscapes of Phylogenetic Trees
Methods for Tree-Based Local Adaptive Thresholding
Create and Navigate Large Multi-Panel Visual Displays
Non-Parametric Trend Tests and Change-Point Detection
Odds Ratio Estimation and Power Calculation for the Trend in
Trend Model
Provides the Standard Distribution Functions for the Triangle
Distribution
Analysing and Visualizing Tribology Measurements
Some basic facilities for ternary fields and plots
Propensity Score Matching of Non-Binary Treatments
An Implementation of Common Response Time Trimming Methods
Trimmed opinion pools of trees in a random forest
A data smoothing approach to explore and test gene-environment
interaction in case-parent trio data
Tools for the Analysis of Animal Track Data
Triangulation of Irregularly Spaced Data
Metropolis Sampler and Supporting Functions for Estimating
Animal Movement from Archival Tags and Satellite Fixes
Social Relation Model (SRM) Analyses for Single or Multiple
Groups
Bayesian Trophic Position Calculation with Stable Isotopes
Pseudo-Vectors Containing All Permutations, Combinations and
Subsets of Objects Taken from a Vector
Functions and Datasets to Accompany the Book "The R Software:
Fundamentals of Programming and Statistical Analysis"
Implementation the TrueSkill algorithm in R
GoF tests allowing for left truncated data
Semi-parametric estimators of truncated regression models
Trust Region Optimization for Nonlinear Functions with Sparse
Hessians
Calculate normalising constants for Bayesian time series models
Tools for Blind Source Separation and Supervised Dimension
Reduction for Time Series
Likelihood-ratio Tests for Two-Sample Comparisons
Two-/Three-Stage Designs for Phase 1&2 Clinical Trials
Nonlinear Time Series Models with Regime Switching
Dynamic Ensembles for Time Series Forecasting
Time Series Analysis and Computational Finance
Entropy Based Analysis and Tests for Time Series
Multiscale Multifractal Analysis of Time Series Data
Two Stage Forecasting (TSF) for Long Memory Time Series in
Presence of Structural Break
Two Stage-Grouped Sure Independence Screening
Mining Univariate and Multivariate Motifs in Time-Series Data
'TSdbi' Extensions to Wrap Miscellaneous Data Sources
Truncated Scale Mixtures of Normal Distributions
Time Series Modeling for Air Pollution and Health
Tools for Temporal Social Network Analysis
T-Distributed Stochastic Neighbor Embedding for R (t-SNE)
Transposable Sphering for Large-Scale Inference with Correlated
Data
Improved Prediction Intervals for ARIMA Processes and Structural
Time Series
Instance Feature Calculation and Evolutionary Instance
Generation for the Traveling Salesman Problem
Functions for Benchmarking Time Series Prediction
Applications of the Qn Estimator to Time Series (Univariate and
Multivariate)
'TSdbi' Extension to Connect with 'SDMX'
Generic SQL Helper Functions for 'TSdbi' SQL Plugins
Time Series Segmentation of Residual Trends
Ternary Search Tree for Auto-Completion and Spell Checking
Fitting and Predict Time Series Interactive Laboratory
Bayesian Modelling of Extremal Dependence in Time Series
Temporal Trend Analysis Graphical Interface
Sampling and Calculating the First and Second Moments for the
Doubly Truncated Multivariate t Distribution
Master Curve Estimates Corresponding to Time-Temperature
Superposition
Genome-wide DNA methylation sites screening by use of training
and testing samples
R Client for the YouTube Analytics and Reporting API
Tufte-style html document format for rmarkdown
Tukeys Trend Test via Multiple Marginal Models
Multi-objective parameter tuning for classifiers
Find every match, or orphan, duplicate, triplicate, or other
replicated values
A Suite of Convergence Acceleration Schemes for EM, MM and other
fixed-point algorithms
Turn vectors and lists of vectors into indexed structures
Convert R Markdown Files to DataCamp Light HTML Files
Lumped Hydrological Model for Education Purposes
Toolkit for Weighting and Analysis of Nonequivalent Groups
Twitter Collector for R and Export to 'SQLite', 'postGIS' and
'GIS' Format
Interactive manipulation of R expressions
Nonparametric test of equality between two copulas
Estimate Gene-Treatment Interaction Exploiting Randomization
Compute thresholds and power for two-stage gwas
Conditional Logistic Regression: A Two-Step Estimation Method
Parse Browser 'User-Agent' Strings into Data Frames
Functions to Simulate and Conduct Dose-Escalation Phase I
Studies
An Implementation of Re-Sampling Approaches to Utility-Based
Learning for Both Classification and Regression Tasks
UC Berkeley graduate division thesis template
Fixes Column Names for Uniform Crime Report "Offenses Known and
Clearance by Arrest" Datasets
Tokenization, Parts of Speech Tagging, Lemmatization and
Dependency Parsing with the 'UDPipe' 'NLP' Toolkit
Estimate Univariate Gaussian or Student's t Mixture
Autoregressive Model
Construct an Unsupervised Hidden Markov Model
'R' 'Markdown' Themes for 'UIUC' Documents and Presentations
Reproducible Data Retrieval from the UK Data Service
Bayesian Analysis of Location-Scale Mixture Models using a
Weakly Informative Prior
Simulating Realistic Gene Expression Data
Structural Equation Modelling in R with 'OpenMx'
Function estimation via Unbalanced Haar wavelets
Implements Models of Uncertainty into the Interpolation
Functions
Uncertain Area Methods for Cut-Point Determination in Tests
Unification of Clustering Results from Multiple Datasets using
External Specifications
UNC Men's Basketball Match Results Since 1949-1950 Season
Tools for Creating Universal Numeric Fingerprints for Data
Stereological Unfolding for Spheroidal Particles
Collate Gene Annotation Data from Uniprot and NIH Gene Databases
Univarate shrinkage prediction in the Cox model
Uniform Sampling of Directed Acyclic Graphs
Abbreviate Strings to Short, Unique Identifiers
Finding Unique or Duplicated Rows or Columns for Atomic Matrices
Unimodal Penalized Spline Regression using B-Splines
Assessment and Evaluation of Formations in United
Unpivot Complex and Irregular Data Layouts
Analysis and Graphics for Unreplicated Experiments
Extract Text from Rich Text Format (RTF) Documents
Stationarity Test Based on Unsystematic Sub-Sampling
United Nations General Assembly Voting Data
Updated Classification Methods using Unlabeled Data
Unsupervised Photometric Membership Assignment in Stellar
Clusters
A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets
Get Data Frame Representations of 'Elasticsearch' Results
Unit Root and Cointegration Tests for Time Series Data
R Wrapper for the 'Bit.ly', 'Goo.gl' and 'Is.gd' URL Shortening
Services
Vectorised Tools for URL Handling and Parsing
Unit Root Tests for Seasonal Time Series
Historical and Contemporary Boundaries of the United States of
America
Create US cancer datasets from SEER, IARC, and US Census data
US Census 2000 Designated Places Shapefiles and Additional
Demographic Data
US Census 2000 Tract Level Shapefiles and Additional Demographic
Data
Uncertainty Analysis for Species Distribution Models
Replaced by 'states2k' -- United States of America Map with the
NAD 1983 Albers Projection
Data Sets, Etc. for the Text "Using R for Introductory
Statistics", Second Edition
Model-Based Clustering via Mixtures of Unrestricted Skew-t
Sactor Analyzer Models
Analyze System Scalability with the Universal Scalability Law
A Companion Package to the Book "U-Statistics, M-Estimation and
Resampling"
Importing, Exporting and Converting Between Datasets and LaTeX
Construct, Evaluate and Plot Value and Utility Functions
Tools for generating and handling of UUIDs
Unbinned weighted histogram analysis method (UWHAM)
Descriptive Statistics, Inference, Regression, and Plotting in
an Introductory Statistics Course
Non-Domestic Vaccine Adverse Event Reporting System (VAERS)
Vaccine Data for Present
US Vaccine Adverse Event Reporting System (VAERS) Vaccine Data
for Present
Validation Tools for Artificial Neural Networks
One-Sided Multivariate Testing Procedures for Rating Systems
Velocity and Accuracy of the LOg-RAnk TEst
Results from the Virginia Lottery Draw Games
Identification and Statistical Analysis of Conserved Waters in
Proteins
Variable Banding of Large Precision Matrices
Large-Scale Bayesian Variable Selection Using Variational
Methods
Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Variance Estimation using Difference-Based Methods
Computes value at risk and expected shortfall for over 100
parametric distributions
VAR modelling: estimation, testing, and prediction
Disease-Gene-Variant Relations Mining from the Public Databases
and Literature
Testing of Genotypic Variance Heterogeneity to Detect
Potentially Interacting SNP
High-Dimensional Screening for Semiparametric Longitudinal
Regression
An Algorithm for Morphometric Characters Selection and
Statistical Validation in Morphological Taxonomy
Sequential Forward Floating Selection using Jeffries-Matusita
Distance
Variable Selection for Model-Based Clustering using the
Integrated Complete-Data Likelihood of a Latent Class Model
Sign Restrictions, Bayesian, Vector Autoregression Models
Pricing a variance swap on an equity index
Tests for Error Autocorrelation and ARCH Errors in Vector
Autoregressive Models
Variational Bayes Discrete Mixture Model
Variational Bayes Latent Position Cluster Model for Networks
Variational Bayes Spike Regression Regularized Linear Models
Variance-Covariance Matrices and Standard Errors
Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Variance Dispersion Graphs and Fraction of Design Space Plots
Variance dispersion graphs and Fraction of design space plots
for response surface designs
Plots of Scaled Prediction Variances for Response Surface
Designs
Visual Regression Testing and Graphical Diffing
Statistical Methods for Designing and Analyzing a Calibration
Study
Perform Set Operations on Vectors, Automatically Generating All
n-Wise Comparisons, and Create Markdown Output
like base::sets tools but keeps duplicate elements
Vector Analysis using Graphical and Analytical Methods in 2D
Vector analysis using graphical and analytical methods in 3D
Tools to Encode Visualizations with the 'Grammar of
Graphics'-Like 'Vega-Lite' 'Spec'
Static and Dynamic 3D Plots for the 'vegan' Package
Access Vegetation Databases and Treat Taxonomy
Jost Diversity Measures for Community Data
Generate High-Resolution Venn and Euler Plots
Variable Selection for Heterogeneous Populations
Query and Install Specific Versions of Packages on CRAN
Creates Vertex Similarity Matrix for an Undirected Graph
Network Hierarchical Structure and Randomization
Very Large Integers: Store and Manage Arbitrarily Big Integers
Gradient and Vesselness Tools for Arrays and NIfTI Images
Linear Mixed Models - An Introduction with Applications in
Veterinary Research
Computation of v Values for U and Copula C(U, v)
Vector Generalized Linear and Additive Models
Discrimination/Classification in very high dimension with linear
and quadratic rules
Vertical and Horizontal Inheritance Consistence Analysis
VIF Regression: A Fast Regression Algorithm For Large Data
Detecting Change-Points via VIFCP Method
Variational Bayesian Inference for Genome-Wide Regression
Visualization and Imputation of Missing Values
Visualization and Imputation of Missing Values - Graphical User
Interface
Multivariate Dependence Modeling with Vines
Combination of violin plot with mean and standard deviation
1-D Scatter Plots with Jitter Using Kernel Density Estimates
Plot Categorical Data Using Quasirandom Noise and Density
Estimates
Default Color Maps from 'matplotlib' (Lite Version)
Generation of Virtual Species Distributions
Network Visualization using 'vis.js' Library
Graph Probability Distributions with User Supplied Parameters
and Statistics
Visualisation of Clusters in Multivariate Data
Fitting Routines for the Vitality Family of Mortality Models
Graphical Visualization Tools for Complex Observational Data
with Focus on Health Sciences
Frequency Matrix Approach for Assessing Very Low Frequency
Variants in Sequence Records
Variable Length Markov Chains ('VLMC') Models
GUI Tools to Process, Analyze and Plot Fisheries Data
Finding Multiple-Objective Optimal Designs for the 4-Parameter
Logistic Model
Create and Manipulate Vocalisation Diagrams
Generic Voss algorithm (random sequential additions)
Vowel Manipulation, Normalization, and Plotting
Mass-Univariate Voxelwise Analysis of Medical Imaging Data
Metrics extraction of trees from T-LiDAR data
Genome Scans to Accommodate and Target Genetic and Non-Genetic
Effects on Trait Variance in Test Crosses
Change Point Estimation for Regression with Varying Segments and
Heteroscedastic Variances
Generate 3D visualizations for data exploration on the web
Variance Ratio tests and other tests for Martingale Difference
Hypothesis
Variable selection for clustering and classification
A Collection of Tools for the Analysis of Remote Acoustic
Telemetry Data
A Statistically Sound 'data.frame' Processor/Conditioner
Visualization of Univariate Data for Comparison
Tools for Preprocessing Visual World Data
Useful functions for visual word recognition research
A Graphical Tool for Wavelet (Cross) Correlation and Wavelet
Multiple (Cross) Correlation Analysis
R Interface to W3C Markup Validation Services
Multivariate Weather-State Approach Conditionally Skew-Normal
Generator
A package to simulate constrained phenotypes under a disease
model H1
Autocorrelation and Heteroskedasticity Correction in Fixed
Effect Panel Data Model
Bayesian Regression with Time-Varying Coefficients
Random Walks in the Intersection of Hyperplanes and the
N-Simplex
A Modular Platform for Reproducible Modeling of Species Niches
and Distributions
The Wally Calibration Plot for Risk Prediction Models
Retrieve 'Magic' Attributes from Files and Directories
Weaning Age Reconstruction with Nitrogen Isotope Analysis
Mixed Effects Modeling with Warping for Functional Data Using
B-Spline
Visualisation and analysis of output files of the hydrological
model WASIM
Actual Evapotranspiration with Energy Balance Models
Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic
Time Series Data
Create Waterfall Charts using 'ggplot2' Simply
Fetch and Analyze Data from 'WaterML' and 'WaterOneFlow' Web
Services
Spatial Watershed Aggregation and Spatial Drainage Network
Analysis
Computes credible intervals for Bayesian wavelet shrinkage
Estimating Long Memory Parameter using Wavelet
A package of functions for computing wavelet filters, wavelet
transforms and multiresolution analyses
Wavelet Routines for Global and Local Multiple Correlation
Data Estimation using Weighted Averages of Multiple Regressions
Basic wavelet routines for one-, two- and three-dimensional
signal processing
Wild Binary Segmentation for Multiple Change-Point Detection
Programmatic Access to Data and Statistics from the World Bank
API
Multiple Change-Point Detection for Nonstationary Time Series
Detection of QTL effects in a small mapping population
World Development Indicators (World Bank)
Functions to Convert Between Weather Metrics
Tools for Handling and Scrapping Instant Weather Forecast Feeds
Stubbing and Setting Expectations on 'HTTP' Requests
A New Format for Lossless and Lossy Image Compression
Tools for Reading Formatted Access Log Files
Access Domains and Search Popular Websites
A Wrapper Around 'WebTRIS' Traffic Flow API from Highways
England
Utility Functions for Developing Web Applications
Western Electric Company Rules (WECO) for Shewhart Control Chart
Weighted Estimated Equation (WEE) Approaches in Genetic
Case-Control Studies
Weighted Portmanteau Tests for Time Series Goodness-of-fit
Weighted Scores Method for Regression Models with Dependent Data
Estimating Weight-Function Models for Publication Bias
A Hydraulics Package to Compute Open-Channel Flow over Weirs
Welch-James Statistic for Robust Hypothesis Testing under
Heterocedasticity and Non-Normality
Weighted Linear Fixed Effects Regression Models for Causal
Inference
Whole Genome Average Interval Mapping for QTL Detection using
Mixed Models
Weighted Generalized Estimating Equations and Model Selection
Wilcoxon based gene set enrichment analysis
{{mustache}} for R, logicless templating
White Matter Normalization for Magnetic Resonance Images using
Whitestripe
R Client for the World Health Organization API
Username, Full Name, Email Address, 'GitHub' Username of the
Current User
High-Speed Processing of VCF, FASTA and Alignment Data
Weighting by Inverse Distance with Adaptive Least Squares for
Massive Space-Time Data
Penalized Regression with Polynomial Basis Expansions
Functions and datasets of the german WikiBook "GNU R"
API Client Library for 'Wikidata Query Service'
Scrape Lake Metadata Tables from Wikipedia
Public Subject Attention via Wikipedia Page View Statistics
Wilcoxon-based variable selection in cross-validation
Calculate Indices of Dynamic Interaction for Wildlife Telemetry
Data
Best Hand Analysis for Poker Variants Including Wildcards
windex: Analysing convergent evolution using the Wheatsheaf
index
Genetic Algorithm for Wind Farm Layout Optimization
Quick and Dirty Estimates for Wildlife Populations
Run Code 'With' Temporarily Modified Global State
Convert Between Spatial Objects and Well-Known Binary Geometry
Regression Analysis Based on Win Loss Endpoints
GUI Implementing Bayesian Working Memory Models
Discriminant Analysis Methods by Weight Mahalanobis Distance and
bayes
Wamser Misc: Reading Files by Tokens, Stateful Computations,
Utility Functions
Wavelet Leaders in Multifractal Analysis
Wavelet Methods for Time Series Analysis
Computes Weight of Evidence and Information Values
Supervised Weight of Evidence Binning of Numeric Variables and
Factors
Spatiotemporal Boundary Detection Model for Areal Unit Data
105 Data Sets from "Introductory Econometrics: A Modern
Approach" by Jeffrey M. Wooldridge
Computing Word Alignment Using IBM Model 1 (and Symmetrization)
for a Given Parallel Corpus and Its Evaluation
Matches words in one file with words in another file
Classical word pools used in studies of learning and memory
Rendering Word Documents with R Inline Code
Import Surface Meteorological Data from NOAA Integrated Surface
Database (ISD)
Retriving Aphia Information from World Register of Marine
Species
World Register of Marine Species (WoRMS) Client
Weighted Piecewise Kernel Density Estimation
Computes Pdf, Cdf, Quantile, Random Numbers and Provides
Estimation for any Univariate Wrapped Distributions
Wrap R Functions for Debugging and Parametric Programming
IRT Item-Person Map with 'ConQuest' Integration
Function for exporting data to SNNS pattern files
Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
A Collection of Robust Statistical Methods
Functions for working with Worldwide Reference System (WRS)
Weighted Random Sampling without Replacement
Benchmark and Correctness Data for Weighted Random Sampling
Without Replacement
Weighted Regression for Water Quality Evaluation in Tidal Waters
Who are You? Bayesian Prediction of Racial Category Using
Surname and Geolocation
Weighted Subspace Random Forest for Classification
Weighted SVM with boosting algorithm for improving accuracy
The W-Test on Genetic Interactions Testing
Computing Weighted Topological Overlaps (wTO) & Consensus wTO
Network
R Wrapper for the 'Wufoo.com' - The Form Building Service
Wegener Center Climate Uncertainty Explorer
Image Tools for Automated Wood Identification
Weighted Win Loss Statistics and their Variances
Interface to X12-ARIMA/X13-ARIMA-SEATS and Structure for Batch
Processing of Seasonal Adjustment
Provide the 'x13ashtml' Seasonal Adjustment Binary
Genomic Simulation of Purebred and Crossbred Populations
Extraction of Business Financial Information from 'XBRL'
Documents
Extensions of Exponential Random Graph Models
Common Infrastructure for Extensions of Exponential Random Graph
Models
Interface to the XGobi and XGvis programs for graphical data
analysis
Exploring Genomic Relations for Enhanced Interpretation Through
Enrichment, Similarity, Network and Annotation Analysis
Plotting ggplot2 Graphics in an XKCD Style
JAR Dependencies for the XLConnect Package
Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
Package required POI jars for the xlsx package
A Toolbox for Multivariate Meta-Analysis
Xiaobei's miscellaneous classes and functions
Tools for Parsing and Generating XML Within R and S-Plus
Markov Random Fields for High-Throughput Genetics Data
Exact Goodness-of-Fit Test for Multinomial Data with Fixed
Probabilities
Tools for Analyzing Crossover Interference
Tools for Nonlinear Mixed-Effect Model Building and Diagnostics
Assessing Functional Impact on Gene Expression of Mutations in
Cancer
Terminal Text Formatting Using Escape Sequences
Accessing Environmental Data from ERD's ERDDAP Server
Calculates Credit Risk Valuation Adjustments
Practical Item Response Theory and Computer-Based Testing in R
A Method for Creating Xylophone-Like Frequency Density Plots
The 'xyz' Algorithm for Fast Interaction Search in
High-Dimensional Data
Yet Another Canonical Correlation Analysis Package
Nearest Neighbor Observation Imputation and Evaluation Tools
A Simple Wrapper for the k-Means Library Yakmo
Data exploration tools from Yale University
Methods to Convert R Data to YAML and Back
A Companion to the e-Book "YaRrr!: The Pirate's Guide to R"
Yield curve or zero-coupon prices interpolation and
extrapolation
Use and if Needed Install Packages from CRAN, BioConductor, CRAN
Archive, and GitHub
Modelling and estimation of the yield curve
Analyze Cricket Performances Based on Data from Cricsheet
Plant Architectural Analysis with Yplant and QuasiMC
The Short-Term and Long-Term Hazard Ratio Model for Survival
Data
A Simple Approach to Scale Gene Expression Data Derived from
Different Platforms for Integrated Analyses
A Graphical User Interface for the 'yuima' Package
Treatment of Zeros and Nondetects in Compositional Data Sets
Multiple, Unpacking, and Destructuring Assignment
ZeBook Working with dynamic models for agriculture and
environment
Easily Install and Load Stable Zelig Packages
Functions to Compute Compositional Turnover Using Zeta Diversity
Calculate the Compressibility Factor 'z' for Hydrocarbon Gases
Differential Abundance Analysis for Metagenomic Data via
Zero-Inflated Beta Regression
Bayesian Inference for Zero-Inflated Count Models
R Interface to Zillow Real Estate and Mortgage Data API
Zero-Inflated Models for Count Time Series with Excess Zeros
Statistical Models for Word Frequency Distributions
Zero-Inflated Poisson Hidden (Semi-)Markov Models
Seismic Reflection and Scattering Coefficients
Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
Utilities for Zonation Spatial Conservation Prioritization
Software
S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Analytical Tools for Zooarchaeological Data
Interactive Analytical Tools for Zooarchaeological Data
Analysis of numerical zooplankton images
Reproducible, Accessible & Shareable Species Distribution
Modelling
Dynamic Plots for Time Series Forecasting
R Bindings to the 'Zstandard' Compression Library
Zebra-Striped Tables in LaTeX and HTML Formats
Functions to Import Data from 'z-Tree' into R
Run a Ztype Game Loaded with R Functions
https://www.r-project.org,
https://www.cs.utexas.edu/users/sustik/QUIC
http://glaros.dtc.umn.edu/gkhome/views/metis
http://www.pcg-random.org/download.html
https://gcc.gnu.org/projects/gomp/
For source code, development versions and issue tracker see
https://github.com/boost-R/gamboostLSS
http://www.kasparrufibach.ch ,
http://www.ceremade.dauphine.fr/~fadoua ,
http://www.math.yorku.ca/~hkj
https://github.com/jeroen/mongolite/ (devel)
https://jeroen.github.io/mongolite/ (user manual)
http://mongoc.org/ (upstream)
http://multcomp.R-forge.R-project.org The publishers web page is
http://www.crcpress.com/product/isbn/9781584885740
http://en.opasnet.org/w/Main_Page ,
http://en.opasnet.org/w/Modelling_in_Opasnet ,
http://en.opasnet.org/w/OpasnetUtils
https://www.opencpu.org (website) https://opencpu.github.io
(documentation) https://github.com/opencpu/opencpu#readme
(devel)
https://ropensci.org/blog/2016/03/01/pdftools-and-jeroen (blog)
https://github.com/ropensci/pdftools#readme (devel)
https://poppler.freedesktop.org (upstream)
https://github.com/abarbour/psd, Barbour and Parker (2014):
http://dx.doi.org/10.1016/j.cageo.2013.09.015, Riedel and
Sidorenko (1995): http://dx.doi.org/10.1109/78.365298
http://www.r-project.org, http://groovy.codehaus.org/,
http://www.groovy-lang.org/indy.html,
http://docs.groovy-lang.org/latest/html/api/index.html,
https://coherentlogic.com/middleware-development/rgroovy?source=cran
<https://bovineaerospace.wordpress.com/category/r/ >,
<https://r-forge.r-project.org/projects/rnomads/ >,
<https://www.r-project.org >
The database is described at:
http://astro.df.unipi.it/stellar-models/
Wing Wong's lab (http://www.stanford.edu/group/wonglab/) &
Stanford Genome Technology Center
(http://gluegrant1.stanford.edu/~DIC/)
Orphaned on 2013-11-12 as the maintainer repeatedly failed to respond to requests for valid portable C++ code.
Orphaned on 2009-02-23 as maintainer address <amy_kapp@hotmail.com> bounced.
Versions prior to 4.7 had 'License_restricts_use: yes'.
Orphaned on 2017-03-21 as long-standing errors were not corrected.  NMU by CRAN team.
Orphaned and corrected on 2017-09-15 as errors were not corrected despite repeated reminders.
Orphaned and repaired on 2014-07-21 as Fortran errors were ignored.
Orphaned on 2014-01-12 as maintainer address <mpineda@math.ualbeta.ca> bounced.
Orphaned on 2014-02-07 as the maintainer could not maintain it officially any more.
Orphaned on 2014-12-07 as maintainer address <chenjun@mail.med.upenn.edu> bounced.
Orphaned on 2011-08-11 as requested by the original maintainer, Tamas K Papp <tpapp@princeton.edu>.
Orphaned on 2012-01-10 as maintainer address bounces and maintainer is untraceable.
Previous maintainer address bounced in Oct 2012, maintainer is unresponsive so orphaned 2012-12-06.
Orphaned and corrected on 2017-04-21 as check errors were not corrected despite reminders.
Orphaned on 2012-12-21 as the maintainer failed to respond to requests for an update for R >= 2.14.0
Orphaned on 2017-03-08 as mail to the maintainer is undeliverable, and this needed correction for R-devel.
Orphaned on 2016-09-25 as requested by the maintainer.
Orphaned on 2014-12-07 as maintainer address <sarah.gerster@isb-sib.ch> bounced.
Orphaned on 2015-06-20 as incomplete maintainer address was not corrected despite reminders.
Orphaned on 2016-10-25 as no response from the maintainer to fatal errors on macOS.
Orphaned on 2015-03-01 and corrected by the CRAN team as misuse of \donttest was not corrected.
Orphaned on 2014-12-07 as maintainer address <shaoyu.li@stjude.org> bounced.
Orphaned on 2013-03-22: the maintainer is unresponsive.
Orphaned on 2017-06-19: all updates have been by the CRAN team for some years.
Orphaned on 2014-06-16 as the maintainer address bounced.
abctools, Bagidis, BCBCSF, depth, dgmb, EBMAforecast, fractaldim, informR, interplot, LSDinterface, magic, MetStaT, mlogitBMA, MonteCarlo, multicon, MultiPhen, multipol, mvmesh, mvProbit, plfm, population, pop.wolf, RcmdrPlugin.EACSPIR, RcmdrPlugin.EBM, RcmdrPlugin.epack, simSummary, spatialfil, spBayes, SphericalCubature, wux, zoib
ade4TkGUI, adegenet, adehabitat, adehabitatHR, adehabitatHS, adehabitatLT, adephylo, adiv, Autoplotprotein, cati, DDD, ecospat, ENiRG, FactoClass, FD, genoPlotR, mbclusterwise, oncomodel, pamctdp, plotprotein, qha, sideChannelAttack, subniche, treespace
dartR, mmod, pegas, PopGenReport, poppr, strataG
clusterSEs, dLagM, gplm, ivpack, rdd, rddtools
GNE, lba, LEAPFrOG, likelihoodAsy, mbbefd
AbSim, adhoc, adiv, apex, aptg, apTreeshape, BAMMtools, BarcodingR, bayou, BBMV, BioGeoBEARS, Canopy, caper, cati, coalescentMCMC, CommEcol, convevol, corHMM, DAMOCLES, DDD, DiscML, distory, diversitree, ecospat, expoTree, FD, geiger, geomorph, GUniFrac, HAP.ROR, hisse, HyPhy, idar, ips, iteRates, jrich, MCMCglmm, metricTester, MiSPU, MonoPhy, MPSEM, mvMORPH, mvSLOUCH, OUwie, paleotree, pastis, pcrcoal, pegas, perspectev, pez, phangorn, phybreak, phyclust, phyloclim, PhylogeneticEM, phylolm, phylosim, phylotools, phyloTop, phytools, picante, RADami, rase, recluster, RNeXML, Rphylip, Rphylopars, rwty, sensiPhy, strap, strataG, StructFDR, surface, TESS, treebase, TreePar, treeplyr, TreeSim, TreeSimGM, treespace, windex
arc, arulesCBA, arulesNBMiner, arulesSequences, arulesViz, ibmdbR, rCBA, recommenderlab, RSarules
bayesMCClust, compositions, mpbart, ocomposition, siar
BinNonNor, GNE, LIHNPSD, mederrRank, NPCD, PoisBinNonNor, PoisBinOrdNonNor, PoisNonNor, RobPer
BatchJobs, cmaesr, ecr, mcMST, netgen, rpn, smoof
bigalgebra, biganalytics, bigFastlm, bigKRLS, biglasso, bigpca, bigtabulate, Bios2cor, GHap, oem
apng, bnstruct, cdb, CHCN, cherry, couchDB, GENEAread, muma, R4CouchDB, RCurl
addhaz, aods3, attribrisk, BACprior, bcROCsurface, bootES, boottol, cardidates, chngpt, CircStats, classyfire, Comp2ROC, Compind, cramer, dawai, DCluster, dhglm, equivalence, experiment, fishmethods, fishmove, frailtypack, gb, HPbayes, imputeYn, IUPS, laeken, LCAextend, mdhglm, MDSGUI, NegBinBetaBinreg, nFactors, Oncotree, ordinalCont, pastecs, phase1RMD, popKorn, prLogistic, PsumtSim, QuantPsyc, R2WinBUGS, random.polychor.pa, reglogit, relaimpo, rtip, sampSurf, simboot, simpleboot, SiZer, survrec, TestSurvRec, timesboot, titan, tlm, truncSP, verification, wBoot
AtelieR, brainGraph, fit4NM, gWidgetsRGtk2, MetSizeR, PKgraph, playwith, rsgcc, RunuranGUI, WMCapacity
AER, alr3, alr4, ALSM, bartMachine, bgmm, candisc, CrypticIBDcheck, DAMisc, Deducer, DistatisR, DJL, epr, extRemes, fitplc, genridge, granova, heplots, hysteresis, ibd, macc, mlma, muma, mvinfluence, papeR, pequod, phia, quantification, quickregression, Rcmdr, RcmdrMisc, RcmdrPlugin.SM, RcmdrPlugin.UCA, regtools, ScottKnottESD, specificity, stepp, systemfit
adabag, AntAngioCOOL, conformal, dtree, fscaret, LncFinder, ordBTL, textmining
DRIP, flux, GAMens, iCluster, meta4diag, muma
cmrutils, crn, ensembleBMA, ensembleMOS, ImportExport, Interpol.T, kerdiest, MicSim, PhysActBedRest, RH2, RMAWGEN, StreamMetabolism, ViSiElse
adehabitatLT, CircOutlier, interfr, LogicForest, moveHMM, verification
Bios2cor, CircOutlier, depth, isocir, localdepth, NPCirc, SOPIE, wle
BarcodingR, CepLDA, clv, ddalpha, EILA, geneSignatureFinder, kmlShape, longitudinalData, mda, Modalclust, multisom, protoclass, svapls
abodOutlier, AdaptFit, AssocTests, bios2mds, ccChooser, ClassDiscovery, clusterSim, ClusterStability, clv, clValid, CORM, dbstats, divo, dpmixsim, FunCluster, gclus, geneSignatureFinder, GLDEX, ICGE, IntNMF, isopam, knnGarden, labdsv, maptree, MiSPU, MSeasy, NMF, optpart, pamr, pMineR, qrfactor, RPMM, spa, StructFDR, tclust, treeClust, TSclust, WeightedCluster
kml, kml3d, longitudinalData, MOCCA, wskm
cr17, crrp, crrstep, crskdiag, currentSurvival, gcerisk, missDeaths
adaptMCMC, adaptsmoFMRI, AdjBQR, ArchaeoPhases, B2Z, bamlss, BANOVA, bayesDccGarch, BayesFactor, BayesLCA, bayespref, BayesSAE, bayesSurv, Bayesthresh, BayesTwin, BayLum, bayou, BAYSTAR, Bergm, bhm, bisoreg, BMAmevt, bmk, boral, c212, coalescentMCMC, codadiags, cplm, cubfits, dclone, eiPack, elrm, endorse, FME, gemtc, HelpersMG, HSROC, HybridMC, hzar, icenReg, iFad, InSilicoVA, lira, MasterBayes, mcgibbsit, MCMCglmm, MCMC.OTU, MCMCpack, mcmcplots, MCMC.qpcr, mcsm, ocomposition, phase1RMD, PhaseType, phcfM, popReconstruct, prevalence, R2MLwiN, R2WinBUGS, ramps, relevent, rjags, Rlda, robustsae, season, siar, SPACECAP, spatial.gev.bma, spBayes, spNNGP, spTDyn, stochvol, superdiag, TESS, Ultimixt, WMCapacity, zoib
asht, kaps, pAnalysis, RcmdrPlugin.coin, uplift
bamlss, biclust, BiplotGUI, coloc, frontiles, ips, mixAK, paramGUI, prefmod, R2BayesX, RcmdrPlugin.SM, snpStatsWriter, spacodiR, tourrGui, VIM, ViSiElse, W2CWM2C
AssocTests, BayClone2, bayess, bgmm, complexity, fcd, FLR, forensic, GameTheory, genetics, MetaDE, NSM3, PoissonSeq, QuACN, REREFACT, RMallow, SNPmaxsel, steadyICA, symmoments
FSTpackage, gskat, iGasso, iNOTE, LGEWIS, LGRF, MiST, pedgene, rvTDT
ADDT, cgam, ConSpline, DoubleCone, isotonic.pen, ShapeChange, ShapeSelectForest
BivarP, censorcopula, ClusterStability, CoClust, CoImp, gofCopula, HAC, HiDimMaxStable, lcopula, RGENERATEPREC, RMRAINGEN, SemiParSampleSel, vfcp, vines
arf3DS4, BinNonNor, BinNor, care, COMBAT, EDISON, FPCA2D, FRB, FRCC, GeneNet, GLSME, Hotelling, HPbayes, kcirt, leapp, longitudinal, MAVTgsa, metavcov, mgpd, miRtest, MultiOrd, mvMORPH, mvSLOUCH, netgsa, OrdNor, penalizedSVM, PoisBinNonNor, PoisBinOrd, PoisBinOrdNonNor, PoisBinOrdNor, PoisNonNor, PoisNor, qtlhot, sda, sideChannelAttack, SMFI5, st, ttScreening
GRCdata, spatialTailDep, SphericalCubature, stppResid, symmoments, vfcp, yuima
AF, ARTP2, asciiSetupReader, batchtools, bea.R, BuyseTest, cdparcoord, cffdrs, classifierplots, clickstream, cvAUC, drgee, easycsv, edgeRun, EurosarcBayes, fastDummies, fdq, gbp, GenomicTools, greport, haploReconstruct, heims, ie2misc, iemisc, JWileymisc, koRpus, LabourMarketAreas, lookupTable, LSPFP, MultiABEL, musica, NNS, openSTARS, orgR, panelaggregation, partools, penaltyLearning, pkggraph, psidR, QuantTools, Rbitcoin, riskRegression, robCompositions, RSauceLabs, RWildbook, simPop, simstudy, sitree, skm, slim, sparseFLMM, splitstackshape, surveyplanning, synthACS, tcpl, ttwa, validateRS, vardpoor, VIM, word.alignment
ilc, Interpol.T, kerdiest, modiscloud, multistate, RcmdrPlugin.survival, relsurv, RMAWGEN, ROCt
bibliospec, biglm, datamap, filehashSQLite, gmDatabase, ODB, ora, poplite, RecordLinkage, RJDBC, RMySQL, ROracle, rpostgis, rpostgisLT, RPostgreSQL, RQDA, RRedshiftSQL, sergeant, sqlutils
DeducerExtras, DeducerPlugInExample, DeducerPlugInScaling, DeducerSpatial, DeducerSurvival, DeducerText
adehabitatHR, BiplotGUI, datautils, expp, ibeemd, stppResid
EcoHydRology, galts, IBHM, likeLTD, micEconCES, prodest, quickpsy, selectMeta
BacArena, bvpSolve, DAMOCLES, DDD, deBInfer, deTestSet, diffEq, DivE, ecolMod, ecosim, embryogrowth, EpiModel, expoTree, FME, GPoM, growthrates, hgm, hisse, insideRODE, neuRosim, nlmeODE, pauwels2014, phaseR, primer, ReacTran, scaRabee, simecol, SoilR, TDCor, TESS, TreePar, tseriesChaos, ZeBook
corregp, ecolMod, genpathmox, LIM, Rramas
DiceEval, DiceOptim, DiceView, fanovaGraph, GPareto, KrigInv, MuFiCokriging
blockmodels, coprimary, DataEntry, ElstonStewart, gmDatabase, gWidgets2, gWidgets2tcltk, gWidgetstcltk, LLSR, traitr
distrEllipse, distrEx, distrMod, distrRmetrics, distrSim, distrTeach, RandVar, RobAStBase, ROptEst, ROptEstOld, RPEnsemble
distrEllipse, distrMod, distrTeach, RandVar, RobAStBase, ROptEst, ROptEstOld
DoE.wrapper, FrF2, pid, RcmdrPlugin.DoE, sFFLHD, support.CEs
dCovTS, EmiStatR, gdm, GenCAT, GiNA, gofCopula, idmTPreg, integIRTy, mbclusterwise, MEGENA, MixRF, mma, MonoInc, mutSignatures, OmicKriging, perspectev, ramsvm, randomGLM, REPTILE, RGBM, Rlda, Rlof, RootsExtremaInflections, RVPedigree, sdcTarget, SDDE, SeqKat, sglOptim, simMP, SISIR, sms, turboEM, unbalanced, VTrack
ANLP, braQCA, censusr, chunked, corrr, crplyr, dggridR, efreadr, EpiCurve, etl, GADMTools, GenCAT, geotoolsR, ggedit, ggmcmc, implyr, manifestoR, merTools, mnreadR, mosaic, nlshelper, oec, PogromcyDanych, poplite, prodest, PWFSLSmoke, quickpsy, radiant.data, recipes, rmdHelpers, SEERaBomb, sergeant, sfc, simglm, sourceR, spdplyr, summariser, surveybootstrap, tcR, TeachBayes, texmexseq, treeplyr, turfR, VWPre
BayesLCA, bayesMCClust, bios2mds, classyfire, ClueR, conformal, dad, flip, GameTheoryAllocation, gskat, Inventorymodel, InventorymodelPackage, LncFinder, MAclinical, malani, mlDNA, obliqueRF, parallelSVM, PASWR, penalizedSVM, RMediation, robCompositions, spartan, tiger, VHDClassification
betaper, BivRegBLS, CrypticIBDcheck, DMRMark, FreeSortR, lvm4net, mada, mdsdt, MetabolAnalyze, RAMpath, sigloc, SMPracticals
approximator, BACCO, calibrator, cmvnorm, lmmlasso, MM
Bergm, blkergm, CCMnet, ergm.count, ergm.ego, ergm.graphlets, ergm.rank, ergm.userterms, gwdegree, hergm, latentnet, lvm4net, statnetWeb, tergm, VBLPCM, xergm.common
condmixt, crackR, ddst, ensembleMOS, evt0, mgpd, Renext, ROptEstOld, truncdist
EnQuireR, Factoshiny, GDAtools, HDoutliers, qha, RcmdrPlugin.FactoMineR, SensoMineR, Xplortext
AnalyzeFMRI, fastHICA, gogarch, icaOcularCorrection, isva, rgr
distrRmetrics, fAssets, fBonds, fCertificates, fCopulae, fExoticOptions, fExtremes, fGarch, fMultivar, fNonlinear, fOptions, fPortfolio, fRegression, fTrading, HBSTM, LSMonteCarlo, rsgcc
Actigraphy, CCA, CollocInfer, ctmcmove, cyphid, fdatest, fda.usc, FDRreg, freqdom.fda, Funclustering, funFEM, funHDDC, geofd, gpDDE, GPFDA, mar1s, pencopula, pencopulaCond, pendensity, penDvine, penRvine, quantreg.nonpar, RFgroove, sde, sft, switchnpreg, vows
DBGSA, DiffCorr, GeneCycle, GeneNet, sda, st, TBEST
BayesSummaryStatLM, biglars, dualScale, ETLUtils, ffbase, PopGenome, propagate, RecordLinkage, sprint, tabplot
CoSeg, DAC, distrRmetrics, fExtremes, fNonlinear, gogarch, mleur
ASMap, aSPU, BaySIC, Canopy, CCA, cmsaf, CNLTtsa, crqa, EMD, fpa, geoelectrics, geosptdb, gptk, gwrr, highriskzone, ibeemd, LatticeKrig, LSC, mgpd, mvLSW, paramGUI, phylotools, ProbForecastGOP, R2GUESS, sGPCA, spatialfil, SpatialFloor, SpatialVx, spThin, stilt, SynchWave, TIMP, TrackReconstruction, UncerIn2, verification, Voss, wux
enveomics.R, genasis, goft, mbbefd, qmap, SCI
biganalytics, cffdrs, clustvarsel, cubfits, Diderot, DNMF, doFuture, doMC, doMPI, doParallel, doRedis, doRNG, doSNOW, eiCompare, EmiStatR, GA, gam, gamsel, GAparsimony, gdm, GenCAT, GiNA, glmnet, gmDatabase, gofCopula, gpmap, hdlm, hzar, idmTPreg, integIRTy, JWileymisc, LEANR, localgauss, MAVTgsa, mbclusterwise, MEGENA, MetaPCA, MetaQC, missForest, MixRF, MonoInc, multicon, mutSignatures, PAGWAS, parfossil, PAWL, penDvine, permGPU, perspectev, PortfolioAnalytics, QuantumClone, ramsvm, randomGLM, REPTILE, RGBM, Rlda, Rlof, RootsExtremaInflections, RVPedigree, s4vd, sdcTarget, SDDE, selfingTree, SeqKat, sglOptim, simMP, SISIR, sms, spatial.tools, SurvRank, survSNP, TPEA, turboEM, unbalanced, VTrack
demography, dendrometeR, Dowd, EnvCpt, expsmooth, fma, forecastHybrid, forecTheta, forega, fpp, fpp2, ftsa, hts, ilc, MAPA, Mcomp, RcmdrPlugin.epack, Rssa, StMoMo, thief, ZRA
AnDE, BayesTwin, diverse, epiDisplay, pkr, psidR, rsubgroup, Rz, shapefiles, UScensus2000cdp, UScensus2000tract, UScensus2010, vegdata
ARTP2, BayesGESM, BayesSAE, brnn, clusterSEs, CUB, DCchoice, detect, DirichletReg, games, gmnl, Hmisc, kaps, mhurdle, mlogit, MRSP, npsf, OutlierDC, plm, plmm, quint, Rchoice, rdd, sharx, simplexreg, smbinning, spBayes, spNNGP, ssym, StratSel, threg, thregI, zoib
DoE.wrapper, FrF2.catlg128, pid, RcmdrPlugin.DoE, simrel
GAabbreviate, mcga, recmap, Rothermel, SPIGA
CausalGAM, GAMens, LSC, MapGAM, mtsdi, ProDenICA
acid, binequality, BSagri, gamlss.add, gamlss.cens, gamlss.inf, gamlss.mx, gamlss.nl, gamlss.spatial, gamlss.tr, gamlss.util, ImputeRobust, ZIBseq
acid, binequality, gamlss, gamlss.add, gamlssbssn, gamlss.cens, gamlss.demo, gamlss.inf, gamlss.mx, gamlss.spatial, gamlss.tr, gamlss.util, SemiParSampleSel
BigTSP, bst, ecospat, gbm2sas, mma, personalized, twang
cccrm, chromoR, COMBIA, compareGroups, genetics, iCluster, ImportExport, LeLogicielR, MixedDataImpute, mixexp, NanoStringNorm, nCal, nonparaeff, pSI, REREFACT, rsurfer, TRSbook, weights
aSPU, diffdepprop, DTComPair, GEEaSPU, gskat, JGEE, mmm, mmm2, saws
bayou, convevol, DAMOCLES, iteRates, surface, TreeSim, windex
boostSeq, forensic, introgress, luca, MasterBayes
BinOrdNonNor, OrdNor, PoisBinOrd, PoisBinOrdNonNor, PoisBinOrdNor
alphashape3d, contoureR, disp2D, EDFIR, FD, gensphere, Maeswrap, modQR, munsellinterpol, mvmesh, nonparaeff, RadOnc, YplantQMC
aqfig, FeedbackTS, geofd, geoRglm, geotoolsR, lmenssp, LS2Wstat, PrevMap, StatDA
epistasis, hglasso, lassoscore, MInt, netgsa, rrlda, rsggm, SelvarMix, spaceExt, sparseBC, Tsphere
AdapEnetClass, bapred, BigTSP, BioMark, CAM, cosso, covTest, DivMelt, DTRlearn, elasso, EstHer, fcd, glmnetcr, glmvsd, Grace, hdlm, HiCfeat, InvariantCausalPrediction, ipflasso, lassoscore, mht, MMMS, MMS, MNS, MultiVarSel, netgsa, parcor, PAS, personalized, PRIMsrc, prototest, qut, refund.wave, regsel, relaxnet, roccv, RVtests, selectiveInference, SIMMS, SOIL, SparseLearner, sparsenet, SubLasso, TSGSIS, widenet
logmult, multgee, prefmod, StMoMo, vcdExtra
allanvar, ARTIVA, bayesMCClust, bayess, cellVolumeDist, corkscrew, DandEFA, datautils, DensParcorr, difconet, ghyp, highSCREEN, iCluster, MDplot, MetabolAnalyze, metabolomics, Meth27QC, mlma, MOQA, muma, PRISMA, RCA, reGenotyper, rehh, ReorderCluster, rnaseqWrapper, ROCR, rsgcc, SubLasso, swamp, YplantQMC
ACSNMineR, climwin, cr17, dotwhisker, egg, ESGtoolkit, GOplot, HH, ncappc, PPtreeViz, primerTree, RATest, rorutadis, sparkTable, spc4sts, tcR, TeachBayes
aws, evmix, metacor, palinsol, pgs, QRM, rGammaGamma, tggd
geospt, phenmod, RSAGA, sensors4plumes, UBL, UncerIn2
ASMap, bayesMCClust, Biocomb, ClusterR, ConsRank, crossdes, dice, DisHet, GameTheory, genetics, GESTr, GSM, hier.part, HUM, iCluster, IDPSurvival, interferenceCI, iteRates, JASPAR, likeLTD, MasterBayes, MDplot, MetabolAnalyze, modMax, mudfold, muma, mvtmeta, ordBTL, orQA, PairViz, REQS, rnaseqWrapper, rpsychi, rvHPDT, sensory, SRRS, trioGxE, Ultimixt, uqr, WMCapacity
apt, BAYESDEF, bayesDem, CONS, dbConnect, DCM, fit4NM, gWidgetsRGtk2, gWidgetstcltk, melviewr, MetSizeR, mrMLM, nCal, NPMOD, RenextGUI, reshapeGUI, rsgcc, RunuranGUI, tourrGui, traitr, WMCapacity
AtelieR, bayesDem, FAiR, fit4NM, iBUGS, melviewr, MergeGUI, MetSizeR, MicroStrategyR, MissingDataGUI, mrMLM, PKgraph, playwith, reshapeGUI, RQDA, rsgcc, RunuranGUI, VIMGUI, WMCapacity
BOG, COMBIA, GABi, HAP.ROR, neuroim, orderbook, rpartitions
abctools, acid, anesrake, aspace, cg, colorscience, compareGroups, cosinor2, crackR, dLagM, EBMAforecast, ENmisc, EstCRM, etable, FRESA.CAD, FunCluster, funModeling, greport, greyzoneSurv, gset, ImportExport, lawstat, LifeHist, mapReasy, MEET, nonparaeff, PredictABEL, PRIMsrc, prLogistic, pse, RcmdrPlugin.Export, RcmdrPlugin.mosaic, RHMS, rms, RM.weights, Scale, tables, testforDEP, univOutl, uqr, UsingR, visualFields, weights
birdnik, censusr, couchDB, CytobankAPI, epxToR, GAR, hkex.api, httping, instaR, LightningR, markmyassignment, osi, Rcolombos, request, Rfacebook, RFc, Rga4gh, RGoogleAnalytics, RGoogleAnalyticsPremium, RGoogleFit, rHealthDataGov, Rlinkedin, RSauceLabs, seleniumPipes, SkyWatchr, SmarterPoland, TMDb, tumblR, ungeneanno, WikipediaR, worms
agop, ARTIVA, AurieLSHGaussian, bayesloglin, bc3net, BDgraph, BNSL, bnstruct, brainGraph, c3net, camel, cccd, centiserve, CePa, CINOEDV, clickstream, cooptrees, corclass, coreCT, corkscrew, cvxbiclustr, cvxclustr, dc3net, dcGOR, Diderot, DiffCorr, dils, disparityfilter, dnet, dpa, ebdbNet, editrules, epistasis, ESEA, fanovaGraph, fasjem, fastclime, FisHiCal, flare, G1DBN, GADAG, gdistance, GeneReg, genlasso, ggm, gRapfa, graphkernels, hglasso, huge, iDINGO, igraphtosonia, InteractiveIGraph, iRefR, JGL, LEANR, linkcomm, LncPath, locits, MEGENA, MetaLandSim, micropan, mlDNA, MNS, modMax, mRMRe, multinet, NEpiC, netassoc, netgsa, NetSwan, optbdmaeAT, optrcdmaeAT, optrees, OutrankingTools, PAGI, pathClass, penRvine, PROFANCY, ProNet, qtlnet, ragt2ridges, RCA, ReliabilityTheory, rEMM, rgexf, RNetLogo, RNewsflow, RWBP, sand, SDDE, secrlinear, sglasso, shp2graph, simule, skeleSim, SOMbrero, soptdmaeA, spacejam, SubpathwayGMir, SubpathwayLNCE, synRNASeqNet, tcR, threejs, timeordered, tnet, VertexSort, wfg, XGR
BMA, cxxfunplus, imprProbEst, mkin, swapClass
clustvarsel, doFuture, doMC, doMPI, doParallel, doRedis, doSNOW, GA, GAparsimony, hdlm, itertools, MetaQC, MonoInc, parboost, RootsExtremaInflections, SDDE, sms, spatial.tools
dicecrawler, GAR, instaR, jSonarR, oec, RFc, RGoogleAnalyticsPremium, RGoogleFit, rHealthDataGov, RSauceLabs, RWildbook, seleniumPipes, TMDb, webglobe
CVST, DRR, DTRlearn, exprso, kappalab, pathClass, probsvm, svmadmm, SVMMaj
CHsharp, FactoClass, FCGR, gammSlice, GenKern, GoFKernel, ICE, IsoCI, MEET, mpm, mpmi, qualV, TPmsm
CoSeg, ElstonStewart, FamEvent, Familias, GESE, LCAextend, MasterBayes, pedantics, pedgene
EasyHTMLReport, OutbreakTools, PopGenReport, PSIMEX, rmdHelpers, rrecsys, SOMbrero, spThin, svSweave, tufterhandout
AdapEnetClass, aml, covTest, cumSeg, elasticnet, ExactPath, FeaLect, GPC, gwrr, monomvn, multiPIM, OTRselect, PAGWAS, pass, pfa, qut, relaxo, rRAP, RXshrink, scalreg, sealasso, sisVIVE, spikeslab
abcdeFBA, abd, adaptTest, agsemisc, ASMap, AssayCorrector, assist, backtest, barcode, bayespref, BayesSAE, bc3net, bgmm, biclust, bifactorial, biotools, BSDA, camel, cardidates, caret, cem, coalescentMCMC, COMBIA, compeir, ConvergenceConcepts, Cubist, cvTools, cwhmisc, DAAG, dad, DATforDCEMRI, DCL, deseasonalize, designmatch, Devore7, DMwR, DoseFinding, dualScale, eHOF, ELT, Emcdf, EmiStatR, EngrExpt, equivalence, erboost, EstCRM, factorQR, fastclime, FAwR, FitAR, flare, flexclust, flexmix, FTICRMS, gammSlice, gbm, geoelectrics, Giza, growthrates, gsbDesign, hett, hgam, HH, Hmisc, hotspots, HSROC, huge, hyperSpec, ICEinfer, iClick, iCluster, IDPmisc, iGasso, insideRODE, InvasionCorrection, irtProb, jagsUI, kmlShape, kwb.hantush, kzs, latticeExtra, lfstat, loa, Maeswrap, MALDIrppa, mapStats, MCPMod, McSpatial, MDR, memisc, mirt, mixexp, mixOmics, mleur, MM2S, MOJOV, MortalitySmooth, mosaic, mritc, msme, nFactors, nlmeODE, nonmem2R, odfWeave, OLScurve, optiscale, orderbook, OUwie, PairedData, paleoMAS, PASWR, PASWR2, pbo, pems.utils, pencopula, pencopulaCond, pendensity, penDvine, penRvine, phenmod, phmm, PKgraph, PKreport, playwith, plink, portfolio, portfolioSim, primer, PROFANCY, ProTrackR, qtlhot, R2MLwiN, R330, randomLCA, rasterVis, RcmdrPlugin.plotByGroup, RcmdrPlugin.temis, rCUR, REPPlab, Rmisc, rms, robfilter, robustsae, RSA, RxCEcolInf, rysgran, SALTSampler, scaRabee, SEL, semPLS, SetMethods, sExtinct, simFrame, simPop, sitree, sme, soilprofile, solaR, spuRs, statnetWeb, stripless, survSNP, svdvisual, sybil, synthpop, TDboost, tdr, titan, TROM, twang, unmarked, vegan, VHDClassification, violinmplot, VizOR, vwr, waterfall, Watersheds, wgaim, wskm, xpose4
AssayCorrector, COMBIA, DCL, ELT, HH, nonmem2R, pencopula, pencopulaCond, rasterVis, sitree, solaR, statnetWeb, twang, vwr, wskm
autoSEM, blavaan, bmem, coefficientalpha, EffectLiteR, eqs2lavaan, equaltestMI, fSRM, influence.SEM, lavaan.survey, profileR, RAMpath, regsem, RMediation, RSA, rsem, semTools, simsem
ALSM, BACprior, BCEE, bestglm, BMA, DEMOVA, FitAR, Kpart, MAR1, pampe, R330, reams, regclass, speff2trial, TSA
acebayes, ATmet, mtk, netgen, penalizedSVM
BCE, EMMAgeo, LIM, MLCIRTwithin, MultiLCIRT, ragtop, spaceExt
afex, agRee, aods3, ArfimaMLM, arm, bapred, Bayesthresh, BBRecapture, blme, cAIC4, carcass, CLME, difR, fishmethods, gamm4, GHap, glmertree, GLMMRR, gtheory, GWAF, influence.ME, JAGUAR, JointModel, lmerTest, longpower, macc, marked, MEMSS, merTools, Metatron, mixAK, MixRF, mlma, mlmRev, MultisiteMediation, nauf, nonrandom, pbkrtest, pedigreemm, predictmeans, prLogistic, robustBLME, robustlmm, simr, structree
AER, cjoint, dcv, erer, fpp, frontier, gravity, ivlewbel, ivpack, ivregEX, mfx, micEconAids, orcutt, PeerPerformance, rdd, systemfit, vars
abc, BBRecapture, curvetest, DATforDCEMRI, ELT, EMD, mcll, McSpatial, nlts, QNB, SimpleTable, TSA
AcrossTic, cherry, clime, Compind, CSclone, EDFIR, EpistemicGameTheory, goalprog, ibd, imprProbEst, irr, kappalab, linprog, mcclust, modQR, mpcv, nonparaeff, pathClass, RcmdrPlugin.sampling, simule, StatMatch
additiveDEA, Benchmarking, boostSeq, DJL, eMLEloglin, GameTheory, GameTheoryAllocation, qVarSel, safeBinaryRegression, sdcTable, TFDEA
catSurv, difR, IMTest, infutil, integIRTy, irtoys, kequate, pcaPA, PerFit, QVM
dataPreparation, MetFns, MRMR, orgR, radiant.data, RGoogleAnalytics, RGoogleAnalyticsPremium, seawaveQ, tidyquant, TimeProjection, tolBasis, weatherr
DMR, geometry, MM, sdcTarget, SNSequate, SODC, spBayes, spselect
cdparcoord, efreadr, expss, forestplot, gbp, ggpubr, gitlabr, gwdegree, imager, jug, lidR, Luminescence, multiplyr, packagetrackr, radiant.data, seleniumPipes, skm, tangram
etasFLP, FeedbackTS, geo, M3, MODIS, oceanmap, swfscMisc, ternvis, vmsbase
cope, ETAS, FeedbackTS, fields, fossil, geo, GeoLight, HBSTM, letsR, M3, mapdata, mapproj, mrbsizeR, muRL, NightDay, oceanmap, OIdata, OriGen, paleobioDB, pals, phytools, PWFSLSmoke, ramps, RNCEP, s2dverification, speciesgeocodeR, ternvis, vmsbase, warbleR, wikilake, YplantQMC
cleangeo, cshapes, DeducerSpatial, Digiroo2, geospacom, GISTools, GWmodel, helsinki, itcSegment, KappaV, lakemorpho, mapStats, McSpatial, micromap, monographaR, Nippon, pycno, qrfactor, rCarto, rKIN, spatialClust, StreamMetabolism, ternvis, UScensus2000cdp, UScensus2000tract, UScensus2010, Watersheds
Bayesthresh, BioPhysConnectoR, dualScale, flexrsurv, freqdom, HRM, mro, MRSP, pom, rrlda, semGOF, snpReady, zoib
aSPU, BayesTwin, cosinor2, DAMOCLES, DisHet, DPWeibull, FastHCS, FastPCS, FastRCS, GAD, InfiniumPurify, localgauss, LS2Wstat, NSA, POMaSPU, r2dRue, RAC, samr, StructFDR, ttScreening, visualFields
censReg, games, gmnl, hermite, ihs, IntLik, intReg, lmmot, mhurdle, mlogit, mlogitBMA, mvProbit, oglmx, pglm, PrevMap, Rchoice, sampleSelection, ssfa, truncreg
CAM, expectreg, FDboost, gamboostLSS, globalboosttest, InvariantCausalPrediction, parboost
BiSEp, clustvarsel, CNprep, CNVassoc, EMCC, GESTr, HDoutliers, IntNMF, LifeTables, MetabolAnalyze, msir, msos, npde, prabclus, qclust, robustDA, Simpsons, SNPMClust, SQN, tclust, Traitspace, treeHFM, upclass, WACS
adaptsmoFMRI, bacr, BayesMed, bayespref, Bergm, CoinMinD, cudia, DMRMark, gset, HSROC, hzar, optDesignSlopeInt, PhViD, R2GUESS, robustsae, RxCEcolInf, SimpleTable, uskewFactors
bamlss, bgeva, CAM, cenGAM, coenoflex, denseFLMM, dlmap, dsm, eHOF, fda.usc, gamlss.add, gamlss.spatial, gamm4, gammSlice, GJRM, gvcm.cat, ibr, icaOcularCorrection, ismev, itsadug, labdsv, MAPLES, modTempEff, mombf, MPINet, multipleNCC, nlshelper, nontarget, ordPens, PanJen, personalized, qgam, R2BayesX, reams, robustgam, scam, season, SemiParSampleSel, semsfa, sparseFLMM, STAR, structree, trioGxE, TSA, TTS
accelmissing, CALIBERrfimpute, genpathmox, HardyWeinberg, hot.deck, ImputeRobust, miceadds, micemd, roughrf, stpm, SYNCSA, TestDataImputation, weights, weightTAPSPACK
cellVolumeDist, HydroMe, micEconCES, mkin, onls, propagate, qpcR, Ritc, RpeakChrom, tumgr
lordif, mirtCAT, NominalLogisticBiplot, OrdinalLogisticBiplot, PerFit
brainR, kml3d, longitudinalData, mritc, ptinpoly, VecStatGraphs3D
CNLTreg, FRESA.CAD, intReg, IQCC, lmmlasso, maxLik, polywog
bootsPLS, mixKernel, R2GUESS, sgPLS, YuGene
llama, mlrMBO, OOBCurve, OpenML, RBPcurve, unbalanced
bayesMCClust, bayess, EXRQ, FAMT, MaXact, mdsdt, PACBO, PAGWAS, PLordprob, qtlhot, quantreg.nonpar, siar, StratSel, Sunder, timedelay, WACS
CSclone, earlywarnings, ICSOutlier, irtProb, LIHNPSD, mixedsde, spfrontier
ATmet, BVS, CEoptim, difNLR, eiPack, hysteresis, ltm, NEff, RM2, score, spatial.gev.bma, Surrogate, trioGxE, WPC
bifactorial, BSagri, HH, ILS, MAVTgsa, medflex, mutossGUI, nparcomp, RcmdrPlugin.coin, RcmdrPlugin.doex, spass, tukeytrend
adaptsmoFMRI, AdMit, anMC, asd, aSPU, AssocTests, AssotesteR, B2Z, BACprior, BAEssd, Bayesianbetareg, bayeslongitudinal, BayesPieceHazSelect, BayesPiecewiseICAR, Bayesthresh, BayesVarSel, BAYSTAR, bdots, Bergm, bglm, bgmm, bgsmtr, bifactorial, BinNonNor, BinNor, Bmix, bnormnlr, BNPTSclust, bpp, CAMAN, caper, CDM, COMBAT, condMVNorm, covmat, CPMCGLM, cudia, dawai, depend.truncation, distrEllipse, DMRMark, dmt, DoseFinding, DunnettTests, edrGraphicalTools, EMC, emulator, FactMixtAnalysis, FAmle, faoutlier, fExpressCertificates, fgof, ForImp, freqdom, freqdom.fda, freqparcoord, FSTpackage, genetics, GenForImp, GenOrd, GGMridge, GGMselect, GLMaSPU, glmm, GLSME, growthrate, gset, hbim, hdrcde, hglasso, highmean, HPbayes, hsmm, ICS, ICSNP, IMIS, imputeYn, JPEN, kcirt, lava.tobit, lawstat, LCAextend, LGEWIS, lmec, lmenssp, LogConcDEAD, logcondiscr, LSMonteCarlo, mada, MAMS, mc2d, MCPMod, mdhglm, mediation, MetabolAnalyze, MetSizeR, mgarchBEKK, mhsmm, miscFuncs, MIXFIM, mixlink, mixsmsn, mmcm, MNS, Modalclust, mombf, mpe, MRsurv, msma, multcomp, MultiGHQuad, multinomRob, MultiOrd, multxpert, muma, mutoss, mvnTest, mvProbit, mvSLOUCH, NegBinBetaBinreg, netgen, nicheROVER, nonmem2R, nparcomp, OptInterim, OrdNor, PairedData, parallelMCMCcombine, party, PAWL, PGEE, pGMGM, phase1RMD, plgp, PoisBinNonNor, PoisBinOrd, PoisBinOrdNor, PoisNor, powerCompRisk, powerGWASinteraction, psbcGroup, qclust, qcr, QGglmm, QRM, R2GUESS, RAD, radiant.design, reglogit, regtools, RidgeFusion, robustsae, rPowerSampleSize, rtip, rwc, RxCEcolInf, SamplerCompare, samplesizelogisticcasecontrol, schwartz97, SCRSELECT, selectiongain, SemiParSampleSel, SEMModComp, sgPLS, simboot, snipEM, SNPassoc, SNPmaxsel, sodavis, sp23design, spass, spate, spatialnbda, spatialprobit, spatialTailDep, spfrontier, sscor, ssmrob, SSsimple, Stem, symmoments, TAR, tclust, texmex, tilting, tlmec, tmvtnorm, TTmoment, uskewFactors, WACS, wbsts, weightedScores, yuima
biglasso, ExactPath, glmvsd, mombf, pass, SOIL
Bergm, blkergm, CCMnet, collpcm, ergm, ergm.count, ergm.ego, ergm.graphlets, ergm.rank, ergm.userterms, haplotypes, hergm, latentnet, lvm4net, mpa, ndtv, networkDynamic, networkDynamicData, networksis, OutbreakTools, sna, statnetWeb, tergm, tsna, VBLPCM, xergm.common
EpiModel, ndtv, networkDynamicData, tergm, tsna
alphaOutlier, drgee, GDAtools, GNE, likelihoodAsy, mbrglm, ph2bye, sigloc, SPmlficmcm
abd, AdaptFit, AdaptFitOS, ADDT, assist, bdots, BiDimRegression, BIOdry, cati, cccrm, CorrMixed, covBM, CpGassoc, DendroSync, DengueRT, dlmap, far, FCGR, fitplc, FlexParamCurve, fmri, gamlss, goric, HydroMe, insideRODE, ipdmeta, IPMpack, JM, JMbayes, joineRML, JointRegBC, JoSAE, JSM, likelihood, lmenssp, lmeSplines, lmfor, longpower, LoopAnalyst, LVMMCOR, macc, mbest, meboot, MethComp, MethodCompare, mgcv, MSwM, multilevel, nlmeODE, nlshelper, orQA, pheno, picante, plmm, portfolio, prc, predictmeans, ProfileLikelihood, psychometric, ramps, REEMtree, RepeatedHighDim, sae, scdhlm, sitar, spatstat, SPREDA, StructFDR, TapeR, ZIBseq
CCpop, corHMM, episplineDensity, GRCdata, hisse, MaxPro, OUwie, parma, PowerUpR
abc, BarcodingR, bcROCsurface, CBPS, depmixS4, difNLR, dlsem, epiDisplay, gamlss.add, gamlss.mx, GDAtools, gfmR, HIest, HydeNet, ImpactIV, introgress, LOGICOIL, MDM, partialOR, pocrm, roughrf, sodavis, synthpop
ALS, archetypes, Libra, simest, SuperLearner
CovSel, DepthProc, generalCorr, rddtools, semsfa, stam
alabama, B2Z, bayesDccGarch, BLPestimatoR, bnormnlr, catIrt, CBPS, CompDist, CompLognormal, compound.Cox, copCAR, dhglm, DOBAD, dsm, embryogrowth, FENmlm, fgof, fishmethods, fracprolif, frailtyHL, ghyp, HPbayes, lbfgsb3, lmeNB, ltbayes, mdhglm, mederrRank, mgpd, mipfp, mixlink, mvglmmRank, mvSLOUCH, optextras, phenology, QRM, rxSeq, SemiMarkov, sgt, SpeciesMix, ssym, turboEM
ClassComparison, ClassDiscovery, Modeler, PreProcess, TailRank
ctsem, EasyMx, ifaTools, lvnet, metaSEM, semtree, umx
embryogrowth, LIHNPSD, macc, midasr, monmlp, NormalGamma, parfm, phenology, sgt, surrosurv
brainR, COMBIA, cudaBayesreg, dcemriS4, dpmixsim, fslr, mritc, neurobase, sublime
ddst, gaussquad, GPC, LaplaceDeconv, LPTime, nlsem, uniftest, valuer
AtelieR, frmqa, hpcwld, iteRates, MM, NSM3, rTableICC
dtree, evtree, glmertree, NHEMOtree, PPtreeViz, psychotree, quint, smbinning, vcrpart
kazaam, pbdDEMO, pbdDMAT, pbdSLAP, pmclust
ccaPP, DetMCD, muma, rainbow, rrlda, simule, sscor
DIFtree, lmmlasso, multiPIM, ROC632, structree, subtype, uplift
CommEcol, idar, phylotools, RPANDA, spacodiR
crqa, meshsimp, OceanView, plot3Drgl, qtlc, spsi
astro, audiolyzR, Autoplotprotein, cytoDiv, DIFtree, dupiR, EasyStrata, epade, interfr, lba, magicaxis, MetFns, mutossGUI, optpart, plotmo, plotprotein, PSIMEX, RAC, randomizeR, rasterImage, SeqFeatR, simplexreg, smacof, summariser
autopls, BioMark, dbstats, dmm, lspls, MetStaT, monomvn, muma, obliqueRF, plsVarSel, RcmdrPlugin.NMBU, robCompositions, RVtests, svapls
abctools, Autoplotprotein, bcpa, blink, bmk, boottol, BSGS, coprimary, coreCT, CPMCGLM, cshapes, DataLoader, DoTC, EBMAforecast, EIAdata, EurosarcBayes, evolqg, Fgmutils, fishmove, gpmap, HRM, imager, iNOTE, ivlewbel, JAGUAR, MScombine, NAPPA, ONETr, PdPDB, plotprotein, plotSEMM, PMA, pxR, rcbalance, rcbsubset, rcqp, RDSTK, remix, reshapeGUI, RGBM, Rmisc, RSAGA, RStorm, rtip, sclero, selfea, sinaplot, smatr, SSrat, StagedChoiceSplineMix, StratifiedBalancing, surveybootstrap, timeordered, unitedR, weightTAPSPACK, wordmatch, worms, zTree
adhoc, gaussquad, kzft, LaplaceDeconv, orthopolynom, rationalfun
celestial, colorscience, conicfit, crqa, cryst, episplineDensity, GORCure, ICGOR, likelihoodAsy, MetFns, mousetrack, OBRE, RAHRS, RpeakChrom, spftir, spselect, TapeR, TDD, VideoComparison
DistatisR, ExPosition, InPosition, MExPosition, TExPosition, TInPosition
bimixt, FRESA.CAD, RatingScaleReduction, RcmdrPlugin.ROC, roccv
CoxBoost, Cprob, pec, riskRegression, SmoothHazard, wally
argparse, AtelieR, benchmark, coprimary, gsubfn, MetaQC, nls2, PKgraph, R2STATS, SparseFactorAnalysis, sqldf, traitr
cba, ConsRank, diverse, dtw, dtwclust, kst, recommenderlab, rEMM, smdc, StatMatch, stream, TSdist
accelmissing, BSGS, emIRT, lctools, robustsae, wnominate
BinNor, Compind, DeducerPlugInScaling, GAabbreviate, generalCorr, HDMD, MOQA, multicon, MultiOrd, nFactors, nonparaeff, orddom, PoisBinOrdNor, random.polychor.pa, REREFACT, Rz, Scale, SODC, SSDforR, SubLasso
ASMap, ctl, dlmap, eqtl, mQTL, pheno2geno, qtlbook, qtlhot, qtlnet, wgaim, xoi
AdapEnetClass, ANOVAreplication, bigsplines, BLCOP, BSquare, cosso, DAGGER, ForecastCombinations, gtop, imputeYn, iterLap, kappalab, kinship2, ldlasso, MonoPoly, multiway, pencopula, RefFreeEWAS, SEL, ShapeChange, SPIn, ternvis, vottrans, wSVM
abc, AdjBQR, alphaOutlier, BSquare, Counterfactual, cqrReg, EILA, emplik, EXRQ, ForecastCombinations, genpathmox, GeoXp, lss, McSpatial, OutlierDC, pfa, pheno, plaqr, PRIMsrc, QRegVCM, qrjoint, quantregGrowth, quantreg.nonpar, Rearrangement, riv, RobPer, rqPen, turboEM, vdg
Agreement, FFD, HTMLUtils, permPATH, RcmdrPlugin.EACSPIR, STAR
ConfigParser, ForecastFramework, LightningR, rly, ShinyImage, tangram
radiant, radiant.basics, radiant.design, radiant.model, radiant.multivariate
DSpat, GeoGenetix, LS2Wstat, ProbForecastGOP, scpm, UncerIn2
AUCRF, bartMachine, BigTSP, D2C, interpretR, MAVTgsa, missForest, MixRF, mlDNA, ModelMap, partitionMap, quantregForest, regclass, RFgroove, RFinfer, rfPermute, roughrf, spartan, spikeslab, sprint, trimTrees, UBL, varSelRF
BLPestimatoR, GPC, iterLap, KrigInv, TruncatedNormal
celestial, McSpatial, RapidPolygonLookup, RWBP, saasCNV, spNNGP, StatMatch
angstroms, biomod2, cffdrs, cmsaf, ConR, coreCT, ctmcmove, diffeR, dismo, DMMF, downscale, dtwSat, ENiRG, envirem, gdistance, gdm, geostatsp, geotopbricks, gfcanalysis, gimms, grec, horizon, itcSegment, kissmig, letsR, lulcc, mapmisc, maxlike, meteoForecast, MigClim, ModelMap, MODIS, modiscloud, mopa, move, npphen, oceanmap, osc, paleobioDB, PersomicsArray, phyloclim, PopGenReport, PrevMap, qrencoder, rangeBuilder, raptr, rasterList, rasterVis, rbgm, redlistr, remote, RSIP, rts, rwc, sampSurf, satellite, sdmpredictors, sensors4plumes, ShapeSelectForest, SiMRiv, SpatialPosition, spatial.tools, spdynmod, TOC, usdm, virtualspecies, water, zoon
EnQuireR, RcmdrPlugin.BCA, RcmdrPlugin.coin, RcmdrPlugin.depthTools, RcmdrPlugin.doex, RcmdrPlugin.EBM, RcmdrPlugin.EcoVirtual, RcmdrPlugin.epack, RcmdrPlugin.Export, RcmdrPlugin.KMggplot2, RcmdrPlugin.mosaic, RcmdrPlugin.MPAStats, RcmdrPlugin.plotByGroup, RcmdrPlugin.pointG, RcmdrPlugin.ROC, RcmdrPlugin.SM, RcmdrPlugin.steepness, RcmdrPlugin.UCA
ASMap, AssayCorrector, bayespref, beadarrayFilter, ChaosGame, corkscrew, DeducerText, ENmisc, FieldSim, GISTools, GOplot, introgress, latticeExtra, LeLogicielR, linkcomm, LSC, MAPA, MDplot, MDSGUI, micromap, MonoPhy, mvtsplot, phenmod, profileR, ProFit, PST, qdap, qPCR.CT, quantregForest, RArcInfo, rCarto, RcmdrPlugin.pointG, RcmdrPlugin.SM, RFLPtools, TrackReconstruction, TRSbook, wordcloud
AdaptiveSparsity, Amelia, ASPBay, BaBooN, baitmet, Barycenter, bcpa, beanz, bifactorial, bigReg, Biocomb, blockmodels, BLPestimatoR, bmlm, breathteststan, brms, BuyseTest, CARBayes, CARBayesST, castor, clogitL1, ClusterStability, ClustMMDD, collUtils, ConConPiWiFun, copCAR, CoxPlus, cqrReg, cstab, ctsem, cytometree, dbmss, DeLorean, DepthProc, dfpk, dils, DPWeibull, drgee, dslice, ecp, EditImputeCont, eggCounts, emIRT, EPGLM, erah, fastGHQuad, FCNN4R, FDGcopulas, FRESA.CAD, fugeR, gaston, GENLIB, GenomicTools, glmgraph, Gmisc, gMWT, growcurves, growfunctions, GSE, GUTS, GWmodel, hBayesDM, hkevp, HUM, hypervolume, IBHM, icenReg, idem, IsingSampler, JAGUAR, jmotif, kergp, knor, lm.br, MAINT.Data, ManifoldOptim, matchingR, meshsimp, miscF, MixedDataImpute, mixlink, Mposterior, multicool, multinet, MVB, mvcluster, NetSim, ngspatial, nonlinearTseries, NPBayesImpute, NPflow, OneArmPhaseTwoStudy, optimization, orQA, palm, PedCNV, PerMallows, POUMM, PoweR, ProbitSpatial, ProNet, propagate, prophet, quadrupen, RBesT, Rborist, Rclusterpp, RcppClassicExamples, RcppOctave, RcppXts, recmap, regsem, remote, Rfast, RGeode, Rlda, Rmalschains, Rmixmod, RmixmodCombi, robustgam, rotations, RoughSets, RSNNS, Rsomoclu, rstanarm, rtkore, sdcTable, seismicRoll, sequences, simFrame, snipEM, SOD, spacodiR, spass, steadyICA, StMoSim, stpm, survHE, survSNP, tagcloud, tbart, themetagenomics, TLMoments, treatSens, treeclim, unmarked, VideoComparison, waffect, walker, wingui, wsrf
FisHiCal, MVB, PedCNV, prospectr, robustgam
aqr, brewdata, CHCN, couchDB, crn, factualR, fds, helsinki, hkex.api, jSonarR, LightningR, LSPFP, notifyR, OIdata, ONETr, osmar, psidR, pullword, pumilioR, R4CouchDB, rbiouml, rbitcoinchartsapi, RDSTK, restimizeapi, RGoogleFit, rHpcc, Rjpstatdb, Rlabkey, rLTP, RNaviCell, rneos, Rodam, ROMIplot, ropensecretsapi, rts, Rtts, RYoudaoTranslate, scrapeR, shopifyr, sos4R, source.gist, SPARQL, streamR, support.CEs, SynergizeR, tumblR, velociraptr, VideoComparison, zendeskR
biomod2, emme2, fpa, generalhoslem, Giza, itan, lctools, PAWL, pedigree, PhaseType, profileR, rapportools, RcmdrPlugin.EACSPIR, reportRx, RSAP, SMFI5, unmarked, wux
AurieLSHGaussian, BCellMA, CINOEDV, clickstream, CompetingRisk, difNLR, diverse, ESGtoolkit, gapmap, ifaTools, JAGUAR, metaforest, mhtboot, mmppr, mudfold, pxR, reshapeGUI, ScottKnottESD, SpatialFloor, tcR, tmpm, TriMatch, validateRS, wordmatch, zoocat
cffdrs, DeducerSpatial, dggridR, diffeR, divagis, DMMF, GADMTools, hddtools, landsat, M3, mapReasy, mgraph, micromap, ModelMap, modiscloud, move, prevR, r2dRue, rangeBuilder, raptr, RSIP, sdmpredictors, ShapePattern, ShapeSelectForest, spatial.tools, SPODT, TOC, UScancer, velociraptr, water, waver
anchors, FAiR, KrigInv, multinomRob, RobPer
cleangeo, DivE, expp, geospacom, GISTools, highriskzone, ibeemd, IceCast, itcSegment, KappaV, pycno, ShapePattern, spatialClust, Watersheds
abcdeFBA, alphashape3d, animalTrack, bcROCsurface, bios2mds, BiplotGUI, bpca, brainR, ChaosGame, ConsRank, corregp, depth, DiceView, directPA, DirichletReg, dti, edrGraphicalTools, eegkit, etasFLP, fdaPDE, FieldSim, foodweb, frontiles, fso, gdimap, gensphere, geoelectrics, geomorph, GeoXp, GGEBiplotGUI, GPoM, hgam, hiPOD, hyper.fit, hypervolume, icosa, kml3d, lba, longitudinalData, LSAfun, Maeswrap, MDSGUI, molaR, mtk, mvmesh, nat, nat.nblast, nat.templatebrains, NeatMap, NNS, nonlinearTseries, optBiomarker, plot3Drgl, qpcR, qtlc, QuantifQuantile, R330, RadOnc, RcmdrPlugin.RiskDemo, RcmdrPlugin.TeachingDemos, Rknots, ROCS, rotations, Rpdb, sphereplot, tkrgl, VDA, VecStatGraphs3D, YplantQMC
abcdeFBA, cosso, DAGGER, designmatch, FRAPO, LPmerge, rorutadis, sdcTable, sparkTable, stratbr, stratvns
brainGraph, CITAN, DataEntry, fit4NM, gWidgets2RGtk2, gWidgetsRGtk2, HomoPolymer, MenuCollection, PKgraph, RGtk2Extras, tourrGui
auRoc, BANOVA, BayesTwin, BaySIC, bsam, gbs2ploidy, lira, pcnetmeta, phase1RMD, prevalence, PurBayes, R2jags, simmr, zoib
AntAngioCOOL, arulesNBMiner, bartMachine, bartMachineJARs, causalMGM, CollapsABEL, collUtils, corehunter, Crossover, edeR, ENMeval, extraTrees, gemtc.jar, glmulti, gMCP, GreedyExperimentalDesign, helloJavaWorld, InSilicoVA, iplots, JGR, mallet, MSIseq, mwa, ramidst, rCBA, rcdklibs, rChoiceDialogs, rDNA, Rdrools, Rdroolsjars, REPPlab, rGroovy, RH2, RImpala, RJDBC, rJPSGCS, RJSDMX, rJython, rkafka, rkafkajars, rmcfs, RMOA, RMongo, RNCBIEUtilsLibs, RNetLogo, rrepast, rsubgroup, SBRect, scagnostics, sjdbc, spcosa, streamMOA, venneuler, xlsx, xlsxjars
couchDB, df2json, edeR, notifyR, RDSTK, Rfacebook, rJython, Rlabkey, RYoudaoTranslate, source.gist, Storm, streamR, zendeskR
audiolyzR, factualR, LightningR, pxR, R4CouchDB, rbiouml, rbitcoinchartsapi, restimizeapi, RNaviCell, ropensecretsapi, rPython, SynergizeR, tumblR, VideoComparison, WDI, weatherr
AMOEBA, CNprep, MicSim, MonteCarlo, pbdMPI, pbdSLAP, snowFT, sprint
ACTCD, CellularAutomaton, curvetest, DATforDCEMRI, GAD, NSA, R.oo
Bessel, correlbinom, CryptRndTest, frmqa, LDOD, LIHNPSD, MixedPoisson
contrast, CPE, DynNom, FeaLect, LCAextend, lordif, missDeaths, nonparaeff, pleio, Tsphere
BMA, ccaPP, compositions, cvTools, ddalpha, DetMCD, dmm, FastHCS, ForwardSearch, GWmodel, ltsbase, MALDIrppa, MBmca, muma, perry, qpcR, robCompositions, robfilter, RobPer, RobustAFT, robustgam, robustHD, rrcov, rrcovHD, rrcovNA, sscor, ssmrob, tsqn, univOutl
Comp2ROC, cvAUC, EMP, genMOSS, GsymPoint, iFad, MEET, obliqueRF, pathClass, PredictABEL, RcmdrPlugin.ROC, rocc, subtype
ibmdbR, ImportExport, mixsep, RODBCext, RODM, stacomiR, stacomirtools, toaster
CellularAutomaton, curvetest, DATforDCEMRI, NPCD, NSA, phylosim, plmDE, R.filesets, R.utils
AdvBinomApps, diffdepprop, diffEq, ecolMod, eel, errint, FME, GSED, kmc, LLSR, mkin, NORMA, pbatR, ProbYX, prop.comb.RR, ReacTran, weightedScores
biotools, erpR, gamlss.demo, GUIDE, LinRegInteractive, MDSGUI, optBiomarker, RVideoPoker, soilphysics
ada, adabag, AntAngioCOOL, chemometrics, DidacticBoost, DStree, dtree, fda.usc, gamlss.add, GENEAclassify, GPLTR, iBST, maboost, maptree, multiPIM, NHEMOtree, PSAgraphics, quint, REEMtree, regclass, rpart.plot, rpartScore, rpart.utils, spatstat, spc4sts, treeClust
BIEN, rpostgis, rpostgisLT, RRedshiftSQL, timeseriesdb
biwt, BMA, DepthProc, FAiR, FRB, groc, muma, riv, RobAStBase, robustfa, rrcov3way, rrcovHD, rrcovNA
alphaOutlier, depmixS4, DiscreteInverseWeibull, DiscreteWeibull, DNAtools, Familias, GEVStableGarch, GsymPoint, IDPSurvival, JOP, LDOD, likelihoodAsy, mipfp, prodest, qualityTools, robustDA, SemiMarkov
bibliospec, CITAN, dexter, filehashSQLite, filematrix, MUCflights, rangeMapper, RecordLinkage, refGenome, RQDA, snplist, sqldf, SSN
BANOVA, beanz, CopulaDTA, dfped, dfpk, dgo, edstan, eggCounts, fergm, idem, MADPop, MIXFIM, varian, walker
discrimARTs, DistributionUtils, FKF, futile.paradigm, GeneralizedHyperbolic, permGPU, rkafka, schwartz97, SkewHyperbolic, SoilR, VarianceGamma
arc, aroma.affymetrix, aroma.cn, aroma.core, calmate, gofCopula, HyPhy, MSIseq, NSA, PubBias, tmle.npvi
AER, CADFtest, cjoint, COUNT, gmm, inference, ivpack, ivregEX, list, mediation, mfx, midasr, PeerPerformance, RcmdrMisc, rdd, strucchange, vars
ACSNMineR, BALCONY, bios2mds, DeducerSpatial, dslice, EpiCurve, gofMC, precintcon, TriMatch
bpca, Canopy, CHsharp, FactoClass, GPCSIV, ISDA.R, lba, lle, MDSGUI, poLCA, windex
bmem, dpa, faoutlier, qtlnet, semdiag, semGOF
Autoplotprotein, BALCONY, CNOGpro, DCODE, EnsCat, LncFinder, LSPFP, MEET, mlgt, plotprotein, SMM
CryptRndTest, distr, ICEbox, modiscloud, pcaPA, plfm, simrel, TTS
diagram, ecolMod, EMMAgeo, marelac, pathdiagram, ReacTran, sparsenet, spnet, symbols
adehabitat, aspace, BayesX, fossil, RPyGeo, RSAGA
ANOVAreplication, AnthropMMD, bde, CLME, complexity, crunchy, DSAIDE, easySdcTable, EmiStatR, EMMAgeo, enviPick, EurosarcBayes, Factoshiny, ggedit, gmDatabase, gwdegree, ifaTools, KappaGUI, meta4diag, MetaAnalyser, mirtCAT, paramGUI, plotSEMM, quipu, RJafroc, sglr, ShinyImage, shinystan, skeleSim, skpr, Sofi, sparkTable, statnetWeb, SubVis, TeachBayes, teachingApps, wallace
gem, gemlog, GENEAclassify, MALDIrppa, ProTrackR, Rivivc, TBEST, TDD
biogram, cherry, designmatch, maptpx, qlcMatrix, RcmdrPlugin.temis, Rcplex, Rglpk, sdcTable
EDR, fpca, irtoys, magicaxis, plmm, vioplot
cSFM, enveomics.R, GenForImp, LIHNPSD, MAINT.Data, tclust
bipartite, CCMnet, CEoptim, cssTools, egonet, hergm, ndtv, NetCluster, Rambo, relevent, SSrat, statnet
BioPhysConnectoR, CePa, doSNOW, MonteCarlo, PeerPerformance, snowfall
AMOEBA, autoSEM, bmem, BuyseTest, classyfire, DLMtool, fugeR, GlobalDeviance, graphscan, hsphase, kcirt, lle, mglmn, MicSim, mlDNA, MonteCarlo, NUCOMBog, peperr, PIGE, R2GUESS, reddPrec, rsgcc, stratbr, stratvns, VertexSort, widals
adehabitat, adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, automap, BarcodingR, biomod2, CAMAN, cartography, cmsaf, colorscience, ConR, constrainedKriging, cshapes, ctmcmove, DClusterm, DeducerSpatial, dggridR, dismo, divagis, DivE, DMMF, ecospat, ENiRG, excursions, expp, FedData, FeedbackTS, fossil, frontiles, GADMTools, georob, geospacom, geosphere, geospt, geosptdb, geostatsp, ggspatial, GISTools, graticule, GWmodel, ibeemd, IceCast, INLABMA, intamap, itcSegment, KappaV, LabourMarketAreas, landsat, MapGAM, mapmisc, mapReasy, maptools, MazamaSpatialUtils, medfate, meta4diag, meteoForecast, meteoland, micromap, modiscloud, mopa, move, MUCflights, Nippon, orsifronts, osrm, plotGoogleMaps, polyCub, postGIStools, prevR, pycno, r2dRue, RandomFields, rangeBuilder, RapidPolygonLookup, raptr, raster, rbgm, rcanvec, recmap, redlistr, RFc, rgdal, rgrass7, RSIP, rtop, rts, rworldmap, rworldxtra, sampSurf, sdm, SDraw, secrlinear, seg, sensors4plumes, shadow, ShapePattern, SkyWatchr, sos4R, spatialClust, SpatialEpi, spdep, spdplyr, spdynmod, spgrass6, spgwr, splancs, spnet, SPODT, spsurvey, spTDyn, ssfa, SSN, stam, stplanr, surveillance, tbart, trip, UBL, UncerIn2, UScensus2000cdp, UScensus2000tract, UScensus2010, usdm, USGSstates2k, vec2dtransf, vein, vetools, water, Watersheds, waver, wux
copCAR, fields, gamlss.spatial, GPFDA, latticeDensity, LatticeKrig, smnet, spThin
evmix, maxent, McSpatial, modelfree, pheno, QRegVCM, quantreg, RItools, rms, RTextTools
adaptsmoFMRI, aoristic, dbmss, Digiroo2, dixon, DSpat, ecespa, GriegSmith, idar, latticeDensity, ppmlasso, rase, sclero, selectspm, SGCS, siar, siplab, sparr, spatialsegregation, SpatialVx, spatstat.local
AMOEBA, DCluster, Digiroo2, expp, GeoXp, ibeemd, latticeDensity, LS2Wstat, medfate, spatialprobit, spfrontier, splm, ssfa
aspace, dixon, ecespa, latticeDensity, soilprofile, stppResid, Watersheds
asht, exact2x2, exactci, nivm, rPowerSampleSize
cond, CopulaREMADA, csampling, dglm, diffIRT, GHQp, JointModel, JSM, lmeNB, marg, mcll, mixcat, MultisiteMediation, multistate, MVR, nlreg, PCS, penalizedSVM, survsim
blkergm, ergm, ergm.count, ergm.graphlets, ergm.rank, ergm.userterms, latentnet, sna, tergm
acs, AnDE, dataPreparation, eqs2lavaan, exsic, Fgmutils, filesstrings, FRESA.CAD, geotopbricks, installr, lero.lero, lettercase, LindenmayeR, Maeswrap, mpoly, mtk, muRL, neuroim, NNS, orgR, pafdR, patchSynctex, PepPrep, PersomicsArray, PhysActBedRest, pMineR, pxR, quipu, recoder, RGENERATEPREC, RJafroc, rsgcc, RSMET, rsurfer, sdcTable, sim1000G, snpReady, sqlutils, ssh.utils, surveybootstrap, tumblR, vardpoor, VarfromPDB, ViSiElse
CalibrateSSB, cjoint, lavaan.survey, mapStats, MOJOV, odfWeave.survey, pedgene, relaimpo, samplingbook, sptm, ssfit, StatMatch, svyPVpack, twang, VIMGUI, weightTAPSPACK
BacArena, GlobalFit, RSeed, sybilccFBA, sybilcycleFreeFlux, sybilDynFBA, sybilEFBA, sybilSBML
accrual, BiplotGUI, forensim, MDSGUI, mixsep, SeqFeatR, SRRS, stosim, TELP
BTLLasso, earth, plotmo, RcmdrPlugin.epack, RcmdrPlugin.TeachingDemos, RcmdrPlugin.UCA
gsw, httptest, humanFormat, kergp, markmyassignment, MInt, oce, SortableHTMLTables, StableEstim
fileplyr, manifestoR, pdfsearch, pinnacle.data, simglm
geotoolsR, ggmcmc, radiant.data, sfc, simglm
EpiCurve, fAssets, fBasics, fBonds, fCopulae, fExoticOptions, fExtremes, fGarch, fImport, fMultivar, fNonlinear, fOptions, fPortfolio, fractalrock, fRegression, fTrading, samplesize4surveys, TimeProjection, timeSeries
fAssets, fBasics, fBonds, fCopulae, fExoticOptions, fExtremes, fGarch, fImport, fMultivar, fNonlinear, fOptions, fPortfolio, FRAPO, fRegression, fTrading, QRM
adehabitat, biotools, BiplotGUI, ConvergenceConcepts, FFD, fisheyeR, fit4NM, forensim, GGEBiplotGUI, GUIDE, MDSGUI, OligoSpecificitySystem, onemap, RcmdrPlugin.TeachingDemos, RHRV, RSA, RVideoPoker, soilphysics, SyNet, VIMGUI
ANLP, DeducerText, manifestoR, maxent, RcmdrPlugin.temis, RNewsflow, smdc, stmgui, textmining, tm.plugin.dc
eiCompare, epistasis, fExpressCertificates, imputeLCMD, propagate, spatialprobit, spfrontier, uskewFactors, WACS
FamEvent, GsymPoint, imp4p, NPflow, spate, validateRS, zCompositions
aster, cepp, glmm, iWeigReg, mcemGLM, MInt, relevent, UWHAM
TScompare, TSfame, TSmisc, TSMySQL, TSodbc, TSPostgreSQL, TSsdmx, TSSQLite
acp, AnalyzeTS, CADFtest, earlywarnings, forecTheta, fpp, mgarchBEKK, nonlinearTseries, RcmdrPlugin.epack, RcmdrPlugin.UCA, TSA
karaoke, monitoR, ProTrackR, sonify, warbleR
AnalyzeTS, CADFtest, frequencyConnectedness, mleur, vars
dualScale, ENmisc, RcmdrPlugin.mosaic, RcmdrPlugin.SM, simPop, vcdExtra
analogue, betaper, BiodiversityR, bipartite, blender, cocorresp, collpcm, CommEcol, CommunityCorrelogram, dave, ebimetagenomics, FD, flowDiv, FreeSortR, GUniFrac, iDynoR, isopam, metacom, MiSPU, mpmcorrelogram, ordiBreadth, palaeoSig, paleoMAS, picante, RAM, rareNMtests, recluster, simba, SYNCSA, vegan3d, vegclust
Bayesthresh, BSquare, EffectStars, errint, EurosarcBayes, GEVcdn, iteRates, lawstat, multgee, ordBTL, ordDisp, pheno2geno, regclass, rxSeq
adwave, brainwaver, RHRV, W2CWM2C, wavemulcor, wmlf
BHMSMAfMRI, binhf, BootWPTOS, costat, CVThresh, dLagM, haarfisz, locits, LS2W, MeanShift, mvLSW, refund.wave, treethresh, waveband
dvfBm, MALDIrppa, RFgroove, TSclust, WaveLetLongMemory, wbsts
DataLoader, ELT, ImportExport, PairwiseD, polyPK, RJafroc
acs, aidar, apsimr, Autoplotprotein, biorxivr, brewdata, compareODM, defrostR, easyPubMed, EcoHydRology, EcoTroph, EIAdata, epxToR, ESEA, gnumeric, grImport, hkex.api, iDynoR, ips, mseapca, mtk, MUCflights, odfWeave, ONETr, osmar, plotprotein, pMineR, pmml, pumilioR, rFDSN, RFinanceYJ, rgexf, rgrass7, rHpcc, Rjpstatdb, Rlinkedin, rneos, RXMCDA, scrapeR, SequenceAnalysis, sos4R, SPARQL, spgrass6, StatDataML, SubpathwayGMir, support.CEs, symbolicDA, ungeneanno, VarfromPDB, weatherr, WikipediaR, XML2R
aptg, dicecrawler, RSauceLabs, rvest, seleniumPipes, xslt
A3, AmpliconDuo, bayesMCClust, compareGroups, DATforDCEMRI, etable, FactoClass, generalCorr, gsDesign, IndependenceTests, klausuR, LeLogicielR, likert, LinRegInteractive, multilevelPSA, pamctdp, papeR, permPATH, PIGE, quipu, RcmdrPlugin.Export, RcmdrPlugin.NMBU, reporttools, rplotengine, rtable, seqDesign, surveillance, survSNP, TableMonster, TRSbook, twang
aqr, bdrift, bsts, cotrend, eDMA, EIAdata, eventstudies, FinancialInstrument, highfrequency, hydroTSM, IBrokers, lfstat, mvLSW, PerformanceAnalytics, PortfolioAnalytics, Quandl, quantmod, RcmdrPlugin.epack, RcppXts, RFinanceYJ, rts, YieldCurve
AER, AutoSEARCH, bdrift, betategarch, bsts, caschrono, changepoint, dendrometeR, dtwSat, dyn, dynlm, eDMA, EIAdata, EloRating, EnvCpt, Evapotranspiration, eventstudies, fast, FinancialInstrument, FLIM, fts, fxregime, gamlss.util, geotopbricks, gets, ggseas, glogis, highfrequency, hydroGOF, hydroTSM, IBrokers, lgarch, lmtest, mar1s, meteoForecast, Modalclust, mudfold, mvLSW, PortfolioAnalytics, QoLR, quantmod, RcmdrPlugin.temis, rdatamarket, reGenotyper, RelValAnalysis, RJSDMX, RObsDat, rts, sde, solaR, StreamMetabolism, strucchange, SWMPr, tgram, trackeR, VideoComparison, xts, yuima, zoocat
alleHap, arm, autoBagging, BayesComm, bayesPop, BayesS5, berryFunctions, biomod2, bootnet, boral, brainGraph, brms, CFC, ClimDown, cocoreg, colordistance, cope, diceR, DLMtool, DMwR, easyNCDF, elementR, factoextra, ForecastFramework, funData, gdimap, geostatsp, ggspatial, glmmBUGS, Gmisc, gsynth, HH, IMIFA, integIRTy, kamila, kgschart, latentnet, magclass, merTools, MFPCA, micemd, mlVAR, mopa, mrfDepth, multiApply, nandb, narray, ncdf4.helpers, ncdf.tools, NetRep, NetworkChange, neuroim, oceanmap, OpenRepGrid, origami, oro.nifti, patternize, pcalg, PLMIX, poliscidata, pssm, QPBoot, quantspec, R2jags, ragt2ridges, Rcmdr, RcmdrMisc, RCMIP5, rfPermute, riskRegression, RItools, r.jive, RNCEP, rosm, RSDA, rtide, s2dverification, secr, secrdesign, SpaCCr, spant, SparseTSCGM, spatial.tools, spatstat, spectral.methods, startR, synbreed, treeclim, xLLiM
BTSPAS, ChainLadder, CompDist, fitur, mbbefd, ReliabilityTheory, teachingApps
adegraphics, adespatial, ads, BalanceCheck, brainGraph, clusterSim, DrBats, entropart, hierfstat, iNextPD, IntClust, iSDM, Laterality, memgene, msap, PBD, pez, phylobase, PopGenReport, poppr, RAM, rmetasim, RVAideMemoire, seqinr, STEPCAM, symbolicDA, virtualspecies
adephylo, AFLPsim, apex, geomedb, hierfstat, outbreaker, rmetasim, skeleSim, StAMPP, treespace
copula, ParetoPosStable, StVAR, VineCopula, vines
alR, GDINA, givitiR, intccr, mlt, optiSolve, ROI.plugin.alabama, TestingSimilarity
agricolae, conjoint, DoE.wrapper, radiant, radiant.design, VdgRsm
anim.plots, gfcanalysis, moveVis, mptools, phytools, roots, spdynmod, stream, TED
AutoModel, DTR, ExomeDepth, LogisticDx, mmeta, reportRx, StroupGLMM, xmeta
adaptiveGPCA, adegenet, adephylo, AnnotationBustR, bcRep, betapart, BIEN, BMhyb, BMhyd, BoSSA, BPEC, brranching, CNull, colordistance, CommT, dartR, DHARMa, entropart, EpiModel, evobiR, evolqg, expands, gamclass, ggmuller, gquad, GrammR, graphscan, gromovlab, harrietr, HMPTrees, homals, HTSSIP, indelmiss, kdetrees, lefse, MAGNAMWAR, markophylo, metacoder, Momocs, monogeneaGM, msap, msaR, multilaterals, nLTT, nodiv, outbreaker, OutbreakTools, P2C2M, PBD, PCPS, phyext2, PhyInformR, phylobase, phylocanvas, phylocurve, phyloland, PhyloMeasures, phylopath, phylosignal, phyndr, PhySortR, PIGShift, Plasmidprofiler, poppr, POUMM, primerTree, RAM, rdiversity, Reol, rotl, RPANDA, Rsampletrees, SeqFeatR, Seurat, sharpshootR, shazam, sidier, SigTree, skeleSim, STEPCAM, stylo, taxize, TKF, TotalCopheneticIndex, treeman, vcfR
blmeco, carcass, ciTools, CosmoPhotoz, eeptools, hbsae, mi, migui, mlVAR, rcure, rr, squid, wfe
Biocomb, clickstream, inTrees, opusminer, preprocomb, RKEEL, sbrl, TELP
dbfaker, gpuR, mason, matrixpls, runittotestthat
assertive, assertive.code, assertive.data, assertive.data.uk, assertive.data.us, assertive.datetimes, assertive.files, assertive.matrices, assertive.models, assertive.numbers, assertive.properties, assertive.reflection, assertive.sets, assertive.strings, assertive.types, multipanelfigure, pathological, poio, tensorr
assertive, flippant, multipanelfigure, pathological, poio
assertive, assertive.files, flippant, multipanelfigure, pathological
assertive, assertive.code, assertive.types, flippant, multipanelfigure, pathological, poio, tensorr
assertive, assertive.data, assertive.data.uk, assertive.data.us, flippant, pathological, poio
assertive, assertive.code, assertive.datetimes, assertive.strings, flippant, multipanelfigure, pathological, poio, tensorr
aemo, afmToolkit, ALA4R, AntWeb, ashr, auk, awsjavasdk, bigQueryR, bigrquery, binman, bnclassify, boxr, breathtestcore, broman, CausalImpact, citr, coala, codyn, dataonderivatives, dbplyr, desc, dgo, diceR, dplyr, easypackages, ecoengine, eulerr, FastKNN, fastrtext, fbar, fiery, fileplyr, fmbasics, fmdates, fuzzr, gastempt, GerminaR, ggloop, ggthemes, ggvis, gistr, googleAnalyticsR, googleCloudStorageR, grattan, HARtools, heatmaply, highcharter, imaginator, implyr, INLAutils, jaatha, keyring, lime, listWithDefaults, liteq, luzlogr, managelocalrepo, mcglm, MOEADr, NetworkInference, neuroim, nima, paramlink, prcbench, precrec, prettyunits, processx, pushoverr, qualpalr, qualtRics, ratelimitr, RBesT, rchess, RCMIP5, rdrop2, remindR, remoter, reqres, reutils, rfisheries, rmapzen, rotl, routr, rpcdsearch, rprime, RSQLServer, saeRobust, safer, secret, semver, simcausal, slimrec, solr, spareserver, sparklyr, sss, stremr, tatoo, textreuse, tibbletime, tidyjson, tmlenet, wdman, wordbankr, ztype
hybridEnsemble, interpretR, iRF, kernelFactory, optiRum
hydroTSM, intamap, intamapInteractive, psgp, sensors4plumes, sptemExp
aws.alexa, aws.cloudtrail, aws.iam, aws.lambda, awspack, aws.polly, aws.s3, aws.ses, aws.sns, aws.sqs
base64url, batchtools, checkmate, decoder, incadata, mlr, mlrMBO, OpenML, rprojroot, stringb
algorithmia, alterryx, aws.lambda, aws.s3, aws.signature, AzureML, cifti, d3heatmap, dataone, emuR, FastRWeb, gifti, gitlabr, gmailr, Hmisc, jmvcore, jug, Knoema, kntnr, leaflet, MALDIquantForeign, manifestoR, manipulateWidget, mapview, MTurkR, neurohcp, officer, placement, plotly, qrencoder, radiant.data, R.devices, readMzXmlData, rmarkdown, rpubchem, RSiteCatalyst, safer, sendmailR, slickR, sparklyr, swirlify, tangram, threejs, trelliscope, tutorial, UNF, wordcloud2
brms, nauf, RBesT, revdbayes, rstanarm, shinystan
aftgee, antitrust, BinOrdNonNor, CatDyn, DSBayes, LifeHist, mlt, optimx, orsk, permDep, pim, reReg, SimMultiCorrData, spef
aslib, BatchExperiments, classiFunc, DynNom, fail, farff, flacco, llama, metagen, mlr, mlrMBO, OpenML, parallelMap, ParamHelpers, RBPcurve, rsig, SwarmSVM, tspmeta, yakmoR
emdbook, Luminescence, metaplus, rstpm2, ss3sim
pcalg, plm, plsVarSel, sortinghat, sparsediscrim, splm
epiR, gridsampler, ORCI, sensitivity2x2xk, senstrat
BGData, bigstep, CollapsABEL, cooccurNet, dtwclust, geneSLOPE, kangar00, lmmpar, mbest, misclassGLM, multiplyr, Rdsm, s2dverification, slimrec, startR, treeman
dpcR, EGRETci, NSM3, simr, TreatmentSelection
BGData, biogram, Cyclops, ETLUtils, ffbase, FLightR, marinespeed, MSBVAR, observer, SpaDES.tools, Stack
boxr, fbRads, heims, nanotime, odbc, planor, RSQLite, twitteR
caTools, geozoo, gepaf, HierO, IgorR, MODIS, MODIStsp, multiCA, nhlscrapr, oro.nifti, rLiDAR, semtree, SocialMediaLab, sysid, warbleR
adegenet, ArCo, bandit, biotools, bootLR, brainGraph, brlrmr, BSagri, btergm, catenary, Causata, childsds, circular, clickR, complmrob, CorrBin, Countr, crs, dagitty, DAMisc, deming, DescTools, drsmooth, dynamichazard, DySeq, eggCounts, emdi, energy, episensr, estprod, eventstudies, evoper, extremogram, frair, GeneralOaxaca, gsg, hdpca, hmi, ic.infer, InformativeCensoring, jocre, jtools, Kendall, lga, lmeresampler, MBESS, mdpeer, medflex, mem, metaplus, mev, MIIVsem, momentuHMM, moveHMM, MplusAutomation, multiwayvcov, netdiffuseR, np, OptimaRegion, pairwiseCI, pdR, perspectev, pgirmess, phylosignal, plsgenomics, plsRbeta, plsRglm, polyapost, poppr, pse, psychmeta, pubmed.mineR, qat, Qtools, R2OpenBUGS, randomLCA, raptr, rcompanion, referenceIntervals, refund, restriktor, rich, robmed, RVAideMemoire, SCBmeanfd, sem, sensitivity, shotGroups, simmr, sisal, soilphysics, sparkTable, SpatialVx, spdep, SPreFuGED, sprint, TraMineR, treeclim, yhat
BatchJobs, batchtools, diezeit, leafletR, mapview, opencpu, rdnb, Rook, roxygen2, tabplotd3
bridgesampling, momentuHMM, MPTinR, multimark, uGMAR, untb
apaTables, AutoModel, breathtestcore, cdom, DeLorean, dotwhisker, eyetrackingR, forestmodel, ggpmisc, highcharter, jpmesh, mason, merTools, modelr, nlstimedist, perccalc, pixiedust, radiant.data, sjlabelled, sjmisc, sjPlot, sjstats, sparklyr, StroupGLMM, survivALL, survminer, survutils, sweep, tadaatoolbox, tidyquant, tidytext, tidyverse, TSS.RESTREND, valr, vdmR, widyr
clustrd, idm, inpdfr, RcmdrPlugin.temis, vcdExtra
adepro, FastRWeb, imager, MetaComp, SGP, VIMGUI
Blaunet, HRM, melviewr, MergeGUI, MissingDataGUI, plfMA, R2STATS, rattle, SeqGrapheR, StatCharrms, vmsbase, x12GUI
funcy, migration.indices, PopGenReport, qqman, SeqFeatR, windfarmGA
afex, anacor, analytics, apaTables, apt, ART, ARTool, AutoModel, bayesLife, BCA, CADStat, Countr, drc, drsmooth, dynlm, easyanova, easyreg, ecm, EffectLiteR, ez, FactoMineR, FSA, funcy, fxregime, gamclass, gcmr, HRQoL, jmv, ldamatch, lmSupport, matlib, MDMR, medflex, micEconCES, MIIVsem, mixlm, mma, momentuHMM, mvdalab, My.stepwise, nardl, nauf, nearfar, NHPoisson, onewaytests, panelAR, pdR, plm, plsRglm, poliscidata, PROreg, radiant.data, radiant.model, radiant.multivariate, rasclass, RcmdrPlugin.BCA, referenceIntervals, robCompositions, rockchalk, rpubchem, RVAideMemoire, ryouready, sdcMicro, simr, sNPLS, StatCharrms, StroupGLMM, tadaatoolbox, translateSPSS2R, userfriendlyscience, VIM, VSE, zetadiv, zooaRchGUI
aLFQ, anomalyDetection, arulesCBA, assignPOP, autoBagging, blkbox, caretEnsemble, chemmodlab, ck37r, classifierplots, ContaminatedMixt, crtests, DamiaNN, darch, datafsm, diceR, dtwSat, easyml, eclust, ensembleR, ESKNN, healthcareai, imputeR, kernDeepStackNet, LOGIT, m2b, modeval, neuropsychology, NoiseFiltersR, parboost, PredPsych, preprocomb, preprosim, preproviz, quantable, rmda, rsMove, RStoolbox, Seurat, specmine, SSL, stepPenal, TLBC, WRTDStidal
AdaptGauss, bdynsys, climdex.pcic, CondIndTests, CorrectOverloadedPeaks, diveMove, DNLC, dynRB, envlpaster, erah, funcy, gplots, growthcurver, IntegratedMRF, m2b, MetaLonDA, multipanelfigure, NHMSAR, nonlinearICP, photobiology, rmarkdown, RSelenium, RTextTools, SchemaOnRead, sdPrior, sValues
immer, LAM, mdmb, miceadds, sirt, STARTS
AEDForecasting, FlowScreen, GeoLight, MPAgenomics, msltrend, rtimicropem
aslib, BatchExperiments, BatchJobs, batchtools, BayesFM, BBmisc, classiFunc, cleanr, cointReg, document, ecr, fail, farff, flacco, Gmisc, hdm, HDtest, htmlTable, HydeNet, icd, icd9, jwutil, lasvmR, lazysql, llama, mcMST, mcparallelDo, mlr, mlrMBO, mmpf, NetworkInference, OpenML, parallelMap, ParamHelpers, pixiedust, RBesT, RBPcurve, RcppShark, RDML, refimpact, rjstat, rscimark, SpaDES.tools, SwarmSVM, tspmeta, yakmoR
activpalProcessing, bdvis, bea.R, dga, Dominance, drLumi, FishResp, highfrequency, ncdf.tools, qdap, qdapTools, redcapAPI, RTransProb, rugarch, SASxport, SpaDES.core, sqldf, TideCurves, TideTables, uHMM, vmsbase, wakefield
acc, atlantistools, CINNA, FFTrees, GenomicTools, gfer, mldr, polyPK
FLightR, momentuHMM, SpaDES.core, SpaDES.tools, SpatialVx
activity, CircMLE, FLightR, KarsTS, kernplus, kineticF, monogeneaGM, monographaR, sharpshootR
Biocomb, chemmodlab, chemometrics, childsds, classifly, classInt, clValid, diceR, DMwR, DMwR2, dprep, e1071, fpc, gencve, HistDAWass, ipred, lineup, MBHdesign, mfe, mlearning, Modeler, msSurv, popsom, prcr, RPEnsemble, som.nn, stylo, supclust, uHMM, UNCLES, wux
aoristic, Biolinv, cartography, ecospat, eurostat, FAOSTAT, GoodmanKruskal, mapStats, plotKML, questionr, rangeMapper, synthpop, tmap, tmaptools
foghorn, rcmdcheck, sessioninfo, spark, TeXCheckR, tracer
advclust, alphabetr, backShift, cds, colordistance, DESnowball, diceR, JADE, lsbclust, movMF, netcom, pcalg, RcmdrPlugin.FuzzyClust, skmeans, stream
adiv, ADPclust, agricolae, analytics, anocva, Anthropometry, aqp, autoBagging, BiBitR, biplotbootGUI, clue, clustrd, comato, convevol, CORElearn, CrossClustering, cstab, DESnowball, diceR, disclapmix, DisimForMixed, DrugClust, effectFusion, EMA, exprso, factoextra, FactoMineR, fpc, funcy, funrar, geophys, GrammR, gromovlab, GrpString, hkclustering, Hmisc, hybridHclust, inpdfr, IntClust, ipft, lakemorpho, ldstatsHD, LocalControl, MEGENA, MiRAnorm, MixGHD, monogeneaGM, multibiplotGUI, mutSignatures, nomclust, oompaBase, openair, optCluster, PANDA, PReMiuM, PSF, PWFSLSmoke, rainbow, randomUniformForest, recluster, relations, rEMM, RHPCBenchmark, robCompositions, RPANDA, rrcov, rrcovNA, RSSL, sdcMicro, sejmRP, semiArtificial, SemiPar, SensoMineR, seriation, sharpshootR, skmeans, sourceR, spatialEco, speaq, spikeSlabGAM, StatDA, stream, symbolicDA, TcGSA, traj, TraMineR, TraMineRextras, TSdist, uHMM, vegan, vegan3d, vmsbase, wordspace
Epi, mafs, reportRx, riskRegression, survminer
agRee, AHMbook, arm, auRoc, BaBooN, bairt, BaM, BANFF, BayesBinMix, BayesComm, bayescount, BayesFM, bayesGARCH, BayesianTools, bayesLife, bayesmix, BayesSingleSub, bayesTFR, BayesX, Bchron, bdpopt, BDWreg, BEST, bfa, bgsmtr, blavaan, BNSP, BPEC, bridgesampling, brms, BRugs, bsam, bssm, btergm, btf, BTSPAS, BTYDplus, CARBayes, CARBayesST, conting, ctmcd, dcmle, deBInfer, DeLorean, diagis, DLMtool, DrBats, EasyMARK, eggCounts, eiwild, emdbook, EpiBayes, ergm, ergm.ego, evolqg, evolvability, fdasrvf, geiger, geoBayes, GERGM, ggdmc, glmBfp, greta, hierarchicalDS, HLSM, hSDM, IFP, immer, IRATER, jagsUI, kobe, LAM, latentnet, list, lsmeans, marked, MCMCvis, mdmb, metaBMA, MfUSampler, mixAK, MixSIAR, morse, MplusAutomation, MRH, MSBVAR, MSGARCH, multimark, NestedCategBayesImpute, networkTomography, nimble, nLTT, nse, PANICr, pcnetmeta, phytools, plotMCMC, polySegratioMM, pomp, POUMM, ptycho, PVAClone, qrjoint, R2admb, R2jags, R2OpenBUGS, r4ss, RcmdrPlugin.RMTCJags, redist, rjmcmc, RMark, rr, runjags, rwty, SAVE, scape, SeqFeatR, simmr, sirt, sisus, slfm, sns, sparsereg, spBayesSurv, spdep, spikeSlabGAM, spTimer, sspse, stocc, TAM, TBSSurvival, tergm, tglm, TreeBUGS, tRophicPosition, wiqid, Zelig, zic, zooaRchGUI
assertive.types, AzureML, CodeDepends, datadr, drake, foreach, globals, lintr, markmyassignment, MonetDBLite, MonetDB.R, multcomp, pkgmaker, PopED, pryr, RStoolbox, simmer, svTools
afex, DCA, glycanr, HBP, matchMulti, nlnet, NPC, NSM3, pairwiseCI, party, permGS, rankFD, rcompanion, shotGroups, sjstats
EEM, factorMerger, iSDM, Morpho, plotKML
anacor, arulesViz, BayesX, bea.R, BiplotGUI, canprot, cds, CHNOSZ, circlize, colorpatch, copula, corr2D, DepthProc, dexter, DiffusionRgqd, DiffusionRimp, DiffusionRjgqd, effects, epicontacts, extracat, forecast, ftsa, gdimap, geiger, genotypeR, ggthemes, gpairs, heatmaply, HH, HistDAWass, IsotopeR, JBTools, mafs, mapStats, mcmcplots, metafolio, msr, munsell, NetOrigin, NMF, OpenRepGrid, optimization, pals, plotKML, Polychrome, qgraph, rainbow, randomcoloR, RcmdrMisc, RSurvey, semPlot, seriation, SGP, simPop, simsalapar, smacof, smoothAPC, subspace, TIMP, trackeR, treemap, vcd, Wats
addreg, biogram, CDVineCopulaConditional, cem, cocoreg, CorrBin, DESnowball, DoE.base, isocir, klaR, label.switching, lllcrc, MCDA, MCMCprecision, nettools, ordinalForest, pcIRT, phytools, PLMIX, qualCI, ReliabilityTheory, rpcdsearch, sBIC, starmie, treespace
gyriq, kangar00, MDMR, MVLM, nonnest2, RVPedigree, seqMeta, shotGroups, tcgsaseq, varComp
apt, cds, copulaedas, flood, gamCopula, GJRM, penRvine, pgee.mixed, PortRisk, sgee, strataG, surrosurv, tailDepFun, VineCopula
AppliedPredictiveModeling, autoBagging, ExplainPrediction, miRNAss, semiArtificial
BinOrdNonNor, biospear, BMhyb, BMhyd, bootnet, cape, cate, clustrd, corHMM, D2C, esaBcv, FADA, idm, jackstraw, ldstatsHD, list, lvnet, lymphclon, MCMCglmm, MFKnockoffs, mixOmics, mlVAR, netassoc, NORTARA, nowcasting, OUwie, parma, pcalg, perARMA, qgraph, r4ss, relaimpo, REndo, RPANDA, seedCCA, semPlot, sparsediscrim, spduration, subselect, tileHMM, wux, xLLiM
aslib, bioOED, CINNA, CorReg, dynRB, easyml, factorstochvol, fdcov, GoodmanKruskal, mixKernel, ModelMap, polyPK, SafeQuant, ShinyItemAnalysis, uHMM, veccompare
bigstatsr, ggpubr, IncucyteDRC, oddsratio, preText, sicegar, survivALL, tadaatoolbox, vanddraabe
covr, cyclocomp, debugme, desc, diffobj, drake, foghorn, gmailr, huxtable, lintr, packagedocs, plumber, prettycode, processx, rcmdcheck, SGP, testthat, TeXCheckR, toOrdinal, tracer, unitizer
bold, ccafs, crminer, duckduckr, enigma, jaod, natserv, nneo, openadds, pleiades, postlightmercury, rbhl, rbison, rcoreoa, rcrossref, rdpla, rgbif, rif, rjsonapi, rnoaa, ropenaq, rredlist, rtimes, rvertnet, spocc, wikitaxa, worrms
ALTopt, calibrator, dbmss, downscale, ei, eiCompare, fMultivar, GB2, highfrequency, inctools, MCMCglmm, np, planar, PowerTOST, SurvDisc, tailDepFun, tseriesEntropy, vines
abbyyR, addinslist, aws.ec2metadata, AzureML, BatchGetSymbols, biomartr, brranching, captr, citr, clarifai, clinPK, CRANsearcher, crul, crunch, dataRetrieval, ecb, elastic, EventStudy, FedData, federalregister, finreportr, foghorn, geoknife, GetHFData, GetLattesData, GetTDData, gitgadget, githubinstall, googledrive, googleway, gpg, GSODR, httr, itunesr, jsonld, magick, meteoland, MTurkR, MTurkRGUI, OAIHarvester, opencpu, OpenML, osmdata, osmplotr, pafdR, pageviews, PakPC2017, pdfetch, pkggraph, quantmod, radiant.data, random, rdian, rdomains, refimpact, request, rgho, RInno, rio, rosm, rpdo, RPublica, RPushbullet, rversions, sbtools, scidb, secret, splashr, stplanr, taxizedb, telegram, tesseract, textreadr, tidyquant, trelliscope, TTR, udapi, V8, W3CMarkupValidator, weatherData, webmockr, webutils, wikitaxa, wrswoR.benchmark
elasticIsing, FWDselect, KRMM, mogavs, robCompositions, sprm
ahp, collapsibleTree, hypoparsr, nonlinearICP, prof.tree, radiant.model, SACCR, stoRy, userfriendlyscience
acc, afmToolkit, anchoredDistr, archivist, BatchExperiments, BatchJobs, bdlp, BETS, BIEN, bigrquery, bikedata, chunked, CITAN, cranlike, D3GB, dartR, dbfaker, DBItest, dbplyr, dexter, DMwR2, emuR, etl, filehashSQLite, gcbd, genomicper, healthcareai, implyr, imputeMulti, InterpretMSSpectrum, liteq, macleish, marmap, mdsr, MetaIntegrator, MonetDBLite, MonetDB.R, nowcasting, odbc, pleiades, postGIStools, redcapAPI, refGenome, replyr, RObsDat, RODBCDBI, RPresto, RSQLite, RSQLServer, SEERaBomb, sejmRP, sf, smnet, snplist, sparklyr, sparkwarc, sqldf, sqliter, taxizedb, tcpl, tigreBrowserWriter, timeseriesdb, TScompare, TSdbi, TSfame, TSmisc, TSMySQL, TSodbc, TSPostgreSQL, TSsdmx, TSsql, TSSQLite, twitteR, UPMASK, vmsbase
dexter, implyr, mdsr, pleiades, RSQLServer, sparklyr, sqlscore, taxizedb
AFM, cordillera, gsrc, haploReconstruct, stream
briskaR, cccd, cholera, DatabionicSwarm, gridsample, highriskzone, interp, MFHD, phonR, ProjectionBasedClustering, rLiDAR, SDraw, spatstat, spdep, spsurvey, sptemExp, stampr
BiBitR, CINNA, d3heatmap, factoextra, heatmaply, MiRAnorm, neatmaps, seriation
BBEST, BMhyb, CEGO, covmat, DstarM, FuzzyStatProb, phenex, QuantumClone, SpaDES.core
cranlike, cyclocomp, DBItest, fiery, roxygen2
CluMix, DescToolsAddIns, nandb, rcompanion, TipDatingBeast
asbio, AssetPricing, bdynsys, bioinactivation, capm, CollocInfer, DAISIE, diversitree, dMod, DSAIDE, dynatopmodel, EpiDynamics, evoper, flexsurv, geiger, gpDDE, HomoPolymer, httk, hypergeo, microPop, mkin, nLTT, PBD, pomp, RLumModel, rodeo, RPANDA, spdynmod, stagePop, TIMP
abjutils, adapr, addinslist, alphavantager, automagic, BEACH, BioInstaller, biospear, bisectr, BrailleR, ChemometricsWithR, creditr, demi, DLMtool, document, easypackages, elementR, exampletestr, FedData, githubinstall, googleAuthR, IPtoCountry, JWileymisc, KoNLP, miscset, MODIS, msgtools, networktools, nima, opencpu, packagedocs, pacman, perccalc, poio, prodigenr, rdoxygen, reproducible, soilcarbon, SpaDES.addins, spectrolab, sweep, teachingApps, tidyquant, timetk, vdiffr, wallace, wru, yearn
ahp, data.tree, gSEM, HydeNet, lavaanPlot, muir, PRISMAstatement, processmapR, radiant.model, rmonad, simmer.plot, SpaDES.core, teachingApps, umx, userfriendlyscience
DiceOptim, DoE.wrapper, GPareto, GPGame, minimaxdesign
GPGame, kernDeepStackNet, mistral, moko, SAVE
adapr, ALA4R, alterryx, aqp, archivist, archivist.github, aws.s3, aws.signature, BatchJobs, batchtools, BetaBit, boxr, caretEnsemble, coala, colorplaner, CorrectOverloadedPeaks, cronR, Crossover, datadr, datapack, devtools, distcomp, downloader, dparser, dplR, dpmr, drake, ecd, ezsim, fbRads, FeatureHashing, feedeR, finch, FRK, FSelector, fulltext, future, geiger, geoparser, ggmap, ggplot2, ggraph, glmbb, harvestr, hoardr, htmltools, httpcache, httptest, hunspell, knitcitations, knitr, Knoema, kokudosuuchi, kzfs, lazyrmd, lintr, madrat, MALDIquantForeign, memo, memoise, micemd, MonetDBLite, MonetDB.R, monkeylearn, MplusAutomation, msgtools, MTurkR, nat, nat.templatebrains, nauf, neurohcp, nlsr, NMF, officer, OpasnetUtils, OpenML, OpenMx, optmatch, packagedocs, pander, pkgmaker, PKNCA, placement, plotly, pointblank, poio, PoloniexR, pomp, prettymapr, proton, qmethod, R2MLwiN, Rbitcoin, rbokeh, R.cache, rclimateca, rcmdcheck, RCMIP5, RcppOctave, readMzXmlData, repmis, repo, reproducible, rerddap, Rexperigen, R.filesets, rmapzen, rngtools, ROAuth, routr, roxygen2, rrepast, rsconnect, RSiteCatalyst, rtext, scatterD3, scidb, semtree, SGP, sharpshootR, shiny, shinycssloaders, shinyFeedback, shinyjs, simpleRCache, sisal, solvebio, SpaDES.core, sparklyr, stepR, storr, swirl, tangram, tesseract, testthat, text2vec, textreuse, trelliscope, tropr, UNF, vegalite
BTR, fpc, mbgraphic, mousetrap, shazam, userfriendlyscience
biomod2, dartR, ecospat, FREddyPro, GSIF, mopa, moveVis, plotKML, PopGenReport, red, SDMPlay, SSDM, virtualspecies, wallace, zoon
distrDoc, logcondens.mode, meteR, miCoPTCM, RobLox, RobLoxBioC, ROptRegTS
ebmc, HighDimOut, preprocomb, preprosim, preproviz
BayesNetBP, fdANOVA, genotypeR, MIPHENO, Rphylopars, SensMixed, synbreed
adapr, admixturegraph, ApacheLogProcessor, ashr, assignPOP, BANFF, BayesBinMix, bcRep, bdots, BDWreg, benchmarkme, bigstatsr, bingat, bnspatial, bossMaps, breakpoint, BSGW, bst, BTR, cape, CFC, cffdrs, ck37r, Compositional, condSURV, cooccurNet, corr2D, Counterfactual, covmat, CovSelHigh, dartR, DCD, DHARMa, Diderot, DiffNet, Directional, DNMF, dynetNLAResistance, EasyMARK, ecospat, EFDR, ENMeval, enpls, EnsembleBase, EpiModel, esaddle, factorcpt, fastLink, fastnet, fdANOVA, fdasrvf, fDMA, forecastHybrid, fuzzyforest, gambin, gamCopula, gamreg, gbts, gdpc, GENLIB, GLIDE, grpss, gsynth, GWLelast, GWRM, hbm, HDCI, HDtest, healthcareai, HMP, HMPTrees, hybridModels, hyperSMURF, IDmining, iLaplace, inctools, Information, intamap, intccr, interflex, InterpretMSSpectrum, iqspr, iRF, JOUSBoost, kdevine, kergp, LANDD, lmmpar, LPR, MAGNAMWAR, Mediana, metaheur, MetaLonDA, metricTester, minimaxdesign, mistral, MNS, momentuHMM, Morpho, mpath, mplot, mstherm, multiApply, MXM, myTAI, NMF, npregfast, opentraj, optiSel, otrimle, paleoTS, parallelML, parallelSVM, parboost, ParetoPosStable, PARSE, pencopulaCond, penDvine, penRvine, phenopix, PhyInformR, phylocurve, preprocomb, preprosim, productivity, prozor, PTE, qgam, qrsvm, QuantumClone, R2MLwiN, randomUniformForest, raptr, RcmdrPlugin.FuzzyClust, Rcrawler, redist, regRSM, ReIns, rem, reval, riskRegression, RKEEL, Rnightlights, robustBLME, robustrao, rprev, RRreg, RStoolbox, semsfa, SFtools, SGP, shazam, SHLR, SIDES, simPop, skpr, Smisc, sparr, sparsevar, spatial.tools, spmoran, sptemExp, StAMPP, survidm, SurvRank, synbreed, tigger, TriadSim, TropFishR, unsystation, VineCopula, vqtl, VSURF, warbleR, WebGestaltR, WEE, WGCNA, zebu
bdots, condSURV, Counterfactual, CovSelHigh, fuzzyforest, gbts, Mediana, RSNPset, SGP, survidm
ck37r, LEGIT, minimaxdesign, siRSM, speaq
biomartr, DiagrammeR, etl, imager, mdsr, RKEELjars, stationaRy, sublime
drfit, ezec, IncucyteDRC, phylocurve, VDAP
addinslist, ArchaeoPhases, arulesViz, BEACH, bea.R, BETS, convertr, CRANsearcher, datasets.load, ddpcr, desctable, dplyrAssist, eAnalytics, explor, expss, fingertipsR, GerminaR, ggraptR, IncucyteDRC, machina, memapp, merTools, MetaAnalyser, polmineR, questionr, radiant.data, randomForestExplainer, Rilostat, RtutoR, sdcMicro, shinyHeatmaply, ShinyItemAnalysis, shinystan, strataG, teachingApps, wallace, wppExplorer, yuimaGUI
classiFunc, dtwSat, mtconnectR, nettools, phylocurve, Seurat, soundgen, TSclust, TSdist, warbleR
antaresViz, backtestGraphics, BETS, lfstat, PWFSLSmoke, rPraat, seasonalview, shinystan, SpatialEpiApp, teachingApps
assignPOP, autoBagging, bindata, Biocomb, blkbox, BSDA, cati, chemmodlab, chemometrics, classInt, clusterfly, clusterSim, cocoreg, Deducer, dpcR, dprep, DrugClust, easyml, ebmc, EnsembleBase, exprso, FFTrees, fitur, fungible, gencve, gld, hda, healthcareai, hybridEnsemble, hydroTSM, hypervolume, IMIFA, IntClust, lfl, LOGIT, LOST, m2b, MEclustnet, MetaLandSim, mfe, MIAmaxent, mistral, MixGHD, mlearning, Modeler, modeval, mopa, msr, NoiseFiltersR, nproc, optBiomarker, osmplotr, PASWR2, ppiPre, PredPsych, preprocomb, preprosim, quantable, radiant.model, rasclass, RcmdrMisc, RecordLinkage, REndo, rminer, RObsDat, RTextTools, RTransProb, sdcMicro, Seurat, simPop, SixSigma, sprint, SSDM, SSL, StatDA, stylo, SwarmSVM, symbolicDA, tableone, translateSPSS2R, TTAinterfaceTrendAnalysis, VIM, xseq
biomod2, bujar, CONDOP, gbts, mopa, pre, SSDM, tsensembler
bujar, chemmodlab, CorReg, DCA, epoc, LINselect, PepSAVIms, rospca, smart, sparseLDA
BayesianTools, Bchron, convoSPAT, corregp, ei, eiCompare, FactoMineR, IsotopeR, lessR, MANOVA.RM, mcmcse, MEclustnet, metamisc, metaSEM, mixOmics, MNM, MotilityLab, NPflow, pca3d, qgraph, scatterD3, SciViews, smacof, soc.ca, specmine
BEDASSLE, kobe, rld, scanstatistics, SNSequate
autoBagging, biogram, bnclassify, BTR, FSelector, ldamatch, prefeR
compareGroups, FSA, morse, NSM3, RSurveillance
Blaunet, btergm, EpiModel, fergm, statnet
knitr, learnr, opencpu, packagedocs, rmarkdown
antitrust, cape, climwin, dpcR, extremeStat, flood, intamap, ldstatsHD, metafuse, mev, mvPot, RecordLinkage, rtdists, SimCorMultRes, tsxtreme, vqtl, Wrapped
BinaryEPPM, carcass, CompareCausalNetworks, complexplus, corHMM, CountsEPPM, ctmcd, ctmm, DAMOCLES, DescTools, evolqg, HDtest, lymphclon, madness, marked, markovchain, MCL, MSGARCH, msm, MultiMeta, netcom, NetworkRiskMeasures, OUwie, popdemo, powerplus, rags2ridges, ragt2ridges, RTransProb, rugarch, SCGLR, SISIR, spdep, switchnpreg, TKF, Tlasso, VariableScreening
BrailleR, evaluator, fergm, fontHind, fontMPlus, ggalt, hrbrthemes, waffle
bibliometrix, CINNA, CONS, denoiseR, EMA, factoextra, FactoInvestigate, freqweights, HistDAWass, IntClust, IRTpp, missMDA, pcaBootPlot, RSDA, RVAideMemoire, SHLR, tetraclasse, uHMM
cstab, freqweights, heatmap3, hypervolume, MetProc, mousetrap, NPflow, pinbasic, propr, SpatialVx, vanddraabe
metaplus, mixAK, MultiGHQuad, randomLCA, rstpm2
CEGO, dexter, ffbase, heims, hutils, icd9, phangorn, quanteda, RSNPset, SpaDES.tools
BLCOP, iClick, lefse, MARX, sicegar, StableEstim, userfriendlyscience, Wrapped
BioGeoBEARS, cati, CluMix, ClusterR, ecospace, pez, RAM, STEPCAM
anacor, bcs, classiFunc, Ecfun, fChange, fdANOVA, flars, FRegSigCom, ftsa, funcy, hisemi, iWISA, pcdpca, PerFit, refund, trackeR, warpMix
cape, CosW, DNLC, ERP, LANDD, lmem.gwaser, nlnet, qgraph, rags2ridges, ragt2ridges, SecKW, SimSeq, SinIW, TanB
BGData, bootSVD, Cyclops, IsoGene, rmgarch, SFtools, SpaDES.tools, Stack
covmat, GEVStableGarch, irtDemo, ludic, MTS
accrual, ENiRG, fbati, IsotopeR, MetaLandSim
ADPclust, astrochron, autoimage, BayesLCA, BayesNetBP, bayesPop, Biolinv, bipartite, biwavelet, bkmr, BPEC, briskaR, CARrampsOcl, chillR, ClimDown, Compositional, ConR, convoSPAT, cope, corr2D, DSsim, earlywarnings, EGRET, ETAS, etasFLP, factorcpt, fdasrvf, fence, fifer, FLightR, funcy, funData, gapfill, GeoLight, GEOmap, georob, geospt, goeveg, GSODR, hglasso, hht, infraFDTD.assist, letsR, lgcp, LICORS, LMERConvenienceFunctions, ltsk, mclcar, ModelMap, mousetrap, mrbsizeR, MRFA, nucim, oceanmap, OptimaRegion, plsgenomics, popsom, prevR, qat, qlcVisualize, ramps, RNCEP, rNOMADS, RsimMosaic, rworldmap, smerc, sparseBC, SpatialExtremes, SpatMCA, SpATS, spatsurv, spBayesSurv, SpectralMap, spmoran, sppmix, StMoMo, stocc, subspaceMOA, SurvCorr, TED, TideCurves, topologyGSA, treespace, vmsbase, VRPM, warpMix, WRTDStidal
adehabitatMA, filehashSQLite, nat, tikzDevice, zooimage
bayou, Dpit, EnviroPRA, fitur, myTAI, SCORPIUS, simPop, STI
AurieLSHGaussian, BCA, biclust, dtwclust, HBP, semiArtificial
BANFF, betareg, expands, fpc, lpme, sBIC
bioinactivation, bioOED, capm, growthrates, mkin
Anthropometry, bapred, cccd, customizedTraining, dprep, emdi, evclass, evclust, gstat, hextri, HighDimOut, hybridEnsemble, ider, ks, LICORS, mateable, missRanger, MOEADr, sensors4plumes, Seurat, TDA, unbalanced, xkcdcolors
descriptr, factorMerger, haven, naniar, noaastormevents, sjPlot, tidyverse
AEDForecasting, BETS, bfast, cricketr, decomposedPSF, fDMA, GeomComb, gpDDE, grattan, iClick, imputeTestbench, imputeTS, KarsTS, lfl, mafs, midasr, msltrend, odpc, PredictTestbench, PSF, robets, ScottKnottESD, smooth, stR, sutteForecastR, sweep, Tcomp, timetk, tsDyn, TSF, tsoutliers, TSPred, tsSelect, WRTDStidal
acmeR, Amelia, AmostraBrasil, AzureML, BETS, BiBitR, Blaunet, DDIwR, Deducer, DescTools, EffectLiteR, expss, fSRM, Hmisc, intsvy, lessR, maptools, prevR, psych, R2MLwiN, RcmdrMisc, RcmdrPlugin.BCA, read.dbc, retistruct, rio, RNHANES, ropercenter, rsatscan, RStata, satscanMapper, SchemaOnRead, Sofi, spsurvey, synthpop, taxlist, translateSPSS2R, vegtable, VIMGUI, vmsbase, zooaRchGUI
automagic, exampletestr, ggThemeAssist, googleAuthR, Rd2roxygen, RFormatter, Rz, splashr
AER, bamlss, bdynsys, betareg, bife, BinaryEPPM, cdfquantreg, Countr, CountsEPPM, crch, dat, estprod, ExtremeBounds, fdaMixed, frontier, gcmr, gee4, glmertree, glmx, greport, growcurves, HBglm, hdm, inferference, ivfixed, ivmodel, ivpanel, ivregEX, jmcm, LARF, lfe, mnlogit, moult, MST, mvctm, npmv, oaxaca, partykit, plsRbeta, polywog, pre, PResiduals, psychomix, psychotree, RBesT, rddtools, sampleSelection, SCGLR, thsls, tosls, varian, Zelig, ZeligChoice, ZeligEI
clustrd, dendextend, MEGENA, nullabor, QuantumClone, robCompositions, RPANDA, semiArtificial, Seurat, sskm, stream, tspmeta
ArfimaMLM, forecast, LPM, mafs, sutteForecastR, TSF
DeLorean, discSurv, gRain, hpoPlot, manifestoR, networkreporting, saeSim, sqliter, translate
AWR.Kinesis, BioInstaller, darch, easyml, evoper, fbRads, futile.matrix, ggraptR, goldi, ISOpureR, md.log, PWFSLSmoke, tawny, tawny.types, text2vec, timelineR, uptasticsearch
aroma.affymetrix, aroma.core, fiery, googleComputeEngineR, kernelboot, multiApply, origami, PSCBS, R.filesets, sperrorest, startR
FPV, FuzzyLP, FuzzyNumbers.Ext.2, Fuzzy.p.value, FuzzyStatProb
AGD, childsds, GJRM, ImputeRobust, list, PReMiuM, rpql, scanstatistics, Wrapped, ZIBseq
aurelius, biomod2, bujar, EnsembleBase, gbts, horserule, imputeR, inTrees, IPMRF, mvtboost, SDMPlay, spm, SSDM, tsensembler
ASIP, link2GI, mapview, MODISSnow, MODIStsp, raptr, Rnightlights, rsMove
adapr, BioGeoBEARS, CADStat, comato, DAMisc, Dominance, drLumi, Ecfun, elementR, enaR, ENiRG, gmodels, gplots, hddtools, likeLTD, lmms, LOST, mglR, MIPHENO, NetComp, Plasmidprofiler, polySegratio, powerbydesign, qat, qdap, QTLRel, rAvis, RbioRXN, RKEEL, rtematres, Seurat, simSummary, sisus, sperrorest, TSmisc, vardpoor, wux
crawl, marmap, memgene, PopGenReport, rWind
flextable, ReporteRs, rvg, svglite, vdiffr
GEEmediate, geesmv, spind, tab, VariableScreening
aftgee, contrast, CorrBin, Cprob, GEint, ipw, MethylCapSig, SHLR, spind, uwIntroStats, wgeesel, Zelig
BMhyb, BMhyd, entropart, evobiR, geomorph, lefse, metricTester, PhyInformR, phylocurve, pmc, RADami, Rphylopars, treeplyr
crmPack, hybridEnsemble, kernDeepStackNet, moko, nearfar, TropFishR
antaresViz, jpmesh, repijson, rmapshaper, rmapzen
geophys, RFOC, rNOMADS, Rquake, RTOMO, s2dverification
betapart, blackbox, cati, curvHDR, DepthProc, EthSEQ, gdimap, hypervolume, imPois, Infusion, iSDM, lidR, MBHdesign, Momocs, mrfDepth, pavo, pdfCluster, penaltyLearning, ProjectionBasedClustering, restlos, retistruct, rForest, rLiDAR, STEPCAM, tmle.npvi
Evomorph, Momocs, monogeneaGM, phylocurve, zooaRchGUI
CensSpatial, convoSPAT, eefAnalytics, gcmr, reportRx, scpm, spTest, TED, UncerIn2, windfarmGA
birdring, ClimClass, ConR, countyweather, crimelinkage, diveMove, echogram, fuzzyjoin, gaiah, geomerge, gfcanalysis, ggmap, gridsample, GWLelast, iSDM, lakemorpho, letsR, m2b, marinespeed, marmap, metScanR, momentuHMM, moveHMM, moveVis, rbgm, red, RStoolbox, stplanr, tmaptools, waver
BANFF, CINNA, clustrd, DescribeDisplay, ggmcmc, gsynth, ICtest, imageData, jmv, LANDD, mbgraphic, MissingDataGUI, PopGenReport, POUMM, randomForestExplainer, robCompositions, rrr, rwty, specmine, svdvis, toaster, userfriendlyscience, vdmR, vortexR
hierarchicalSets, mosaic, Plasmidprofiler, preproviz, PTXQC, rwty, specmine, starmie, superheat
causaleffect, geneNetBP, osmplotr, pcalg, phylopath, qgraph, simPATHy, stablespec
BPEC, choroplethr, countyweather, earthtones, emdi, FLightR, GADMTools, ggCompNet, hurricaneexposure, meltt, metScanR, momentuHMM, moveHMM, OutbreakTools, PWFSLSmoke, RAM, rnrfa, SensusR, sidier, SWMPr, toaster, trackeR, tweet2r, ubeR
clustrd, corrr, factoextra, gfer, gghalfnorm, ggnetwork, ggpubr, ggraph, ggspectra, gMOIP, idm, MEGENA, NetworkInference, PAC, randomForestExplainer, soc.ca, starmie, tetraclasse, userfriendlyscience
accSDA, ArchaeoPhases, CosmoPhotoz, edeaR, eechidna, futureheatwaves, ggdmc, memapp, nima, processmapR, PSAboot, RcmdrPlugin.KMggplot2, rdiversity, RtutoR, survivALL, toaster, ubeR
adapr, archivist.github, BioInstaller, devtools, excerptr, ghit, kirby21.base, reproducible, spm12r
graphicalVAR, iDINGO, lvnet, MatrixLDA, NHMSAR, pgraph, qgraph, scout, shock, SparseTSCGM
anoint, ArCo, aurelius, bastah, BAYESDEF, BeSS, bestglm, biospear, blkbox, c060, Causata, cocoreg, ComICS, CorReg, CovSelHigh, customizedTraining, DMRnet, DWLasso, easyml, elasticIsing, EnsembleBase, EnsemblePenReg, eshrink, expandFunctions, FADA, FindIt, fuser, gamreg, gencve, glmnetUtils, graphicalVAR, GWLelast, HDCI, hdi, hdm, hdnom, HiCblock, HiCglmi, hit, hybridEnsemble, imputeR, iqspr, IsingFit, kernDeepStackNet, knockoff, lime, lmmen, LPR, maxnet, mdpeer, MESS, metafuse, mgm, milr, MPAgenomics, mpath, mplot, mRchmadness, MRFA, msaenet, msr, MWRidge, nproc, OHPL, pact, parboost, partialCI, pgraph, PhylogeneticEM, polywog, pre, prioritylasso, rarhsmm, RCPmod, rdomains, regnet, rminer, RNAseqNet, rolypoly, RPtests, rrpack, RSDA, rsig, RTextTools, SentimentAnalysis, SIS, SISIR, slimrec, sparsereg, sparsevar, stepPenal, stm, SubgrpID, SurvRank, TANDEM, tsensembler, XMRF
alphavantager, bigstatsr, blastula, configr, datadogr, dbplyr, dplyr, edeaR, googledrive, mosaic, processmapR, shinycssloaders, tidyr, tidyselect, vdiffr
CADStat, oii, pamm, papeR, spdep, tableone
anomalyDetection, ClusterR, CommEcol, cooccur, CryptRndTest, homomorpheR, iterpc, kantorovich, ldamatch, m2r, mvPot, nos, partitions, pcalg, robustrao, unifDAG
bigQueryR, googleAnalyticsR, googleCloudStorageR, googleComputeEngineR, searchConsoleR
bayesPop, bea.R, eAnalytics, gtrendsR, MetaLandSim, mplot, RLumShiny, windfarmGA, wppExplorer
Compind, DCA, EFAutilities, jmv, mirt, OpenRepGrid, qmethod, radiant.multivariate, traj, userfriendlyscience
asymmetry, BAMMtools, bcRep, bingat, bioplots, cancerTiming, CluMix, CoFRA, colordistance, condformat, corregp, diceR, DiffNet, DNMF, DPBBM, dynOmics, fDMA, FLLat, FSA, GMD, haploReconstruct, HBP, heatmaply, HMP, IntClust, ionr, JBTools, KSEAapp, lmms, lmSupport, matie, MenuCollection, MetaIntegrator, MetProc, mglR, mma, momr, monogeneaGM, MultiPhen, NCA, NPflow, optCluster, PARSE, phantom, PhyInformR, plotMCMC, poliscidata, polyPK, qat, quantable, r4ss, RAM, RcmdrPlugin.BiclustGUI, r.jive, RPPanalyzer, SafeQuant, seriation, sesem, Seurat, shapeR, smart, sourceR, spartan, SSDM, SurvRank, TcGSA, TIMP, TLdating, TopKLists, TROM, xhmmScripts
BayesNetBP, bnspatial, D2C, HydeNet, rags2ridges, simPATHy, topologyGSA
NMF, playwith, quickPlot, Radviz, seqHMM, SGP, sidier, simsalapar, treemap
accSDA, AFM, afmToolkit, atlantistools, bamdit, BayesFM, BioPET, BNSP, bsam, bsamGP, caretEnsemble, cellWise, ChaosGame, choroplethr, classifierplots, cocoreg, colorpatch, CommT, CONS, CosmoPhotoz, covmat, crmPack, darksky, DataExplorer, dataMaid, DClusterm, DendroSync, diagis, dynsim, emdi, episensr, factorMerger, fastqcr, Fgmutils, findviews, fSRM, funModeling, GADMTools, gdimap, geomerge, getmstatistic, ggCompNet, ggdmc, ggfortify, ggguitar, ggmosaic, ggpubr, ggtern, gogamer, granovaGG, hdnom, Hmisc, IGM.MEA, IntClust, iqspr, kgschart, LBSPR, learningCurve, lemon, likert, lindia, lmms, lsbclust, LumReader, mbgraphic, metaplotr, miscset, modeval, morse, mosaic, moveVis, myTAI, networktools, nima, olsrr, pacotest, patPRO, pdp, PGRdup, Phxnlme, PhyInformR, pifpaf, Plasmidprofiler, pointRes, powerlmm, prcbench, precrec, preproviz, PTXQC, qdap, QuantumClone, r2glmm, radiant.basics, radiant.data, radiant.model, radiant.multivariate, RAM, rangeMapper, RDS, refund.shiny, remote, reproducer, rfPermute, rnoaa, rrepast, RSPS, rstan, Seurat, ShinyItemAnalysis, shinystan, simPH, snht, soc.ca, sparsereg, speaq, spikeSlabGAM, starmie, statebins, strataG, strvalidator, subspaceMOA, sure, survminer, survMisc, svdvis, SWMPr, TELP, trackeR, TriMatch, tRophicPosition, UpSetR, userfriendlyscience, varian, vdg, viridis, waffle, WRTDStidal, WVPlots, Xplortext, yorkr
BrailleR, ggimage, hexSticker, multiDimBio, multipanelfigure
bestglm, DMRnet, geoGAM, grpss, healthcareai, refund
artfima, brr, copula, diffpriv, Dpit, dti, ecd, gamCopula, gdimap, geospt, geosptdb, mbbefd, MBESS, palm, POUMM, rtdists
AFM, automap, covatest, EFDR, GSIF, hydroTSM, intamap, intamapInteractive, lidR, ltsk, meteo, momentuHMM, oXim, plotKML, prevR, psgp, rtop, spm, spup, STMedianPolish, windfarmGA
datamart, htm2txt, iemisc, ITGM, MplusAutomation, smbinning, SpecHelpers, vmsbase
bea.R, colorplaner, cowplot, cr17, darksky, egg, geofacet, getmstatistic, GGally, ggalt, ggExtra, ggforce, ggplot2, ggraph, ggtern, gridExtra, hierarchicalSets, Hmisc, lemon, mafs, multipanelfigure, ncappc, patternplot, pheatmap, Plasmidprofiler, PTXQC, strvalidator, superheat, tcR, timelineR, trackeR, treeDA, userfriendlyscience, waffle
apmsWAPP, AutoModel, BayesFactor, blkbox, bootnet, BradleyTerry2, CoClust, CoImp, conting, cooptrees, datautils, drc, dynpanel, ecospat, eiwild, erp.easy, fastLink, flexsurvcure, gambin, gdata, GerminaR, GGMselect, gplots, gwdegree, hierfstat, HKprocess, idefix, IGM.MEA, imputeMulti, IntClust, kamila, LINselect, LogicForest, MarkowitzR, mau, mcMST, melviewr, metaMix, minimaxdesign, mixedMem, mopa, MuViCP, nima, NSM3, paleobioDB, phenopix, pipe.design, PolyPatEx, polySegratioMM, qgraph, r4ss, randomUniformForest, RankAggreg, RCPmod, RegularizedSCA, reservoir, RevEcoR, RI2by2, Rlda, rmetasim, SGP, shinystan, sisus, smart, sourceR, ss3sim, STEPCAM, supcluster, svs, TcGSA, TROM, veccompare, vortexR, vqtl, windfarmGA
Blaunet, extremevalues, gimme, GrammR, maGUI, metagear, MODIStsp, pcrsim, playwith, plfMA, QVM, R2STATS, relMix, RQDA, RSCABS, SeqGrapheR, stacomiR, StatCharrms, TR8, VIMGUI, vmsbase
Blaunet, GrammR, maGUI, metagear, MODIStsp, PKgraph, plfMA, R2STATS, RSCABS, SeqGrapheR, stacomiR, StatCharrms, vmsbase
CITAN, dataone, datapack, KoNLP, medicalrisk, MODIStsp, rankdist, ReinforcementLearning, sBIC, tictactoe, Wmisc
BEACH, Blaunet, dataMaid, electionsBR, ggplotgui, ImportExport, labelled, mitml, perccalc, RcmdrMisc, Rilostat, rio, ropercenter, SchemaOnRead, sdcMicro, sjlabelled, sjmisc, tadaatoolbox, tidyverse, webuse
ArchaeoPhases, curvHDR, rainbow, RChronoModel, SIBER, tRophicPosition
diffrprojects, diffrprojectswidget, mdftracks, rtext, wikipediatrend
BayLum, datadr, extracat, hexSticker, hextri, mbgraphic, nandb, openair, PhyInformR, pitchRx, plotluck, plotly, Radviz, rasterVis, rbokeh, som.nn, trelliscope
aqp, automultinomial, BaBooN, bdynsys, brainGraph, CANSIM2R, caschrono, choroplethr, CluMix, Compind, contrast, Counterfactual, datacheck, DeducerSpatial, diceR, DiffNet, drLumi, fdapace, FedData, fifer, FRK, Gmisc, Greg, hddtools, heuristica, HH, HistogramTools, hydroPSO, imageData, intsvy, JWileymisc, kehra, lazyWeave, lmerTest, LSAmitR, mapStats, MatchLinReg, matchMulti, mediation, mgm, microplot, momr, nbpMatching, ndl, NetOrigin, neuropsychology, nhanesA, nlrr, NSM3, PerFit, pixiedust, plotluck, pointblank, poliscidata, polyPK, progenyClust, qgraph, qte, rags2ridges, RcmdrMisc, redcapAPI, reldist, remix, rmngb, RPPanalyzer, SASxport, scape, SDD, SensMixed, Seurat, sharpshootR, smacof, SocialMediaLab, soilDB, spsurvey, stacomiR, strat, strataG, summarytools, survivalsvm, SvyNom, tigerhitteR, TopKLists, TraMineR, translateSPSS2R, VIMGUI, VRPM, WGCNA, wppExplorer, wux, x12GUI, xkcd, xpose4
DBItest, feather, haven, odbc, readr, tidyverse
crminer, rdpla, rerddap, rnoaa, taxizedb
compareDF, condformat, Greg, Hmisc, neuropsychology, rms
antaresViz, bea.R, BETS, blastula, blogdown, bookdown, bsplus, colourpicker, condformat, crosstalk, d3r, desctable, DiagrammeR, DT, dygraphs, expss, flexdashboard, flextable, formattable, ggiraph, ggvis, googleway, HARtools, highcharter, Hmisc, htmltidy, htmlwidgets, huxtable, lazyrmd, leaflet, leafletCN, leaflet.esri, leaflet.extras, leaflet.minicharts, learnr, listviewer, manipulateWidget, mapedit, mapview, metricsgraphics, miniUI, officer, packagedocs, papayar, pivottabler, pixiedust, pkggraph, plotly, pointblank, questionr, radarchart, rAmCharts, reactR, ReporteRs, rgl, rmarkdown, rmdformats, rms, SciencesPo, sergeant, shiny, shinybootstrap2, shinyBS, shinydashboard, shinyDND, shinyFiles, shinyHeatmaply, shinyjs, shiny.semantic, shinyTime, shinyWidgets, sparkline, sunburstR, tableHTML, tangram, timevis, tint, tmap, trelliscope, tufte, vegalite, vembedr, visNetwork, widgetframe, xaringan
antaresViz, bea.R, billboarder, canvasXpress, collapsibleTree, colourpicker, d3heatmap, D3partitionR, d3Tree, DiagrammeR, diffr, diffrprojectswidget, DT, dygraphs, EcoGenetics, edgebundleR, flexdashboard, flextable, focusedMDS, formattable, ggiraph, googleway, gradientPickerD3, gSEM, HARtools, heatmaply, highcharter, htmlTable, htmltidy, inlmisc, lazyrmd, leaflet, leaflet.esri, leaflet.extras, learnr, lime, listviewer, manipulateWidget, mapedit, mapview, metricsgraphics, mindr, msaR, networkD3, pairsD3, phylocanvas, pivottabler, Plasmidprofiler, plotly, profvis, QRAGadget, qrage, qtlcharts, radarchart, rAmCharts, rbokeh, rchess, re2r, rgl, rhandsontable, rpivotTable, scatterD3, seasonalview, shinyHeatmaply, shinyjqui, shiny.semantic, simPATHy, slickR, sparkline, SpatialEpiApp, sunburstR, svgPanZoom, threejs, timevis, tmap, treespace, trelliscope, vdiffr, vegalite, visNetwork, wordcloud2
bea.R, blogdown, boxr, BrownDog, emuR, fiery, issueReporter, jug, opencpu, plumber, rfigshare, routr, servr, shiny, SocialMediaLab, spectrino, switchrGist, tabplotd3, ubeR
bootnet, equSA, netassoc, qgraph, Tlasso
BrailleR, hrbrthemes, msgtools, ptstem, spelling, TeXCheckR, textstem, tidytext
brr, cnbdistr, GB2, sadists, TLMoments, TreeBUGS
iemisc, radiant, radiant.basics, radiant.data, radiant.design, radiant.model, radiant.multivariate
bcRep, binequality, binsmooth, educineq, soundecology
mlearning, optBiomarker, recipes, RecordLinkage, RTextTools, SurvRank
bigpca, denoiseR, fuser, gyriq, igraph, MFPCA, OmicKriging, recommenderlab, Seurat, text2vec
BOIN, GSSE, hisemi, ORCME, orderedLasso, pi0
acc, BaTFLED3D, boostr, combiter, doRNG, ecospat, factorcpt, fDMA, foreach, FSelectorRcpp, HDCI, hyperSMURF, iLaplace, Information, intercure, iterpc, itertools2, ldamatch, LEGIT, lgcp, LPR, MAGNAMWAR, mistral, neuroim, paleoTS, phenopix, PhyInformR, polywog, prospectr, randomUniformForest, rcdk, RcmdrPlugin.FuzzyClust, resemble, robustBLME, rpubchem, semsfa, SGP, shazam, simr, skpr, spacom, spatsurv, ssa, tigger, turboEM, unsystation, vqtl, warbleR, YaleToolkit, zebu
BayesBD, colordistance, Ecfun, gazepath, geomorph, gglogo, ggmap, gitter, googleway, HiveR, imager, ImaginR, imguR, LeArEst, Momocs, multipanelfigure, OpenImageR, patternplot, phenopix, qgraph, rcicr, readbitmap, rosm, RsimMosaic, RXKCD, shapeR, spongecake, StereoMorph, trelliscope, warbleR, zooimage
BKPC, CondIndTests, DeLorean, diceR, DynTxRegime, fpc, fPortfolio, funcy, gkmSVM, iqspr, kernelFactory, kpcalg, KRMM, LinearizedSVR, pi0, plsRcox, qrjoint, qrsvm, rminer, robCompositions, ROI.plugin.ipop, RSSL, survivalsvm, SwarmSVM, Synth, tsensembler, tsiR, VRPM
adegraphics, BiplotGUI, condSURV, curvHDR, diveMove, DVHmetrics, earlywarnings, EMMIXskew, gamclass, GeoXp, ggalt, gplots, hdrcde, jocre, kamila, kdevine, kernplus, ks, MSBVAR, NCA, philentropy, prodlim, r2d2, Radviz, rddtools, SCBmeanfd, SensoMineR, shazam, shotGroups, soil.spec, spd, survidm, synRNASeqNet, tcgsaseq, tmaptools, TSclust, TSdist
dcmr, dlmodeler, MARSS, networkTomography, tsPI, TSPred, walker
fat2Lpoly, GENLIB, MESS, optiSel, paramlink, RVFam, RVPedigree, RVsharing, SHLR
adapr, ADPclust, advclust, assertive, automagic, BEQI2, BIGDAWG, BisRNA, blandr, blastula, blkbox, blogdown, bookdown, bookdownplus, BrailleR, ChocoLattes, cleanEHR, compareGroups, condformat, condir, confidence, cooccurNet, cystiSim, dataCompareR, DSAIDE, easyformatr, ezknitr, factorMerger, flexdashboard, formattable, furniture, gglogo, gistr, Gmisc, Greg, gSEM, htmlTable, huxtable, inlmisc, interAdapt, kableExtra, kfigr, Kmisc, knitLatex, knitrBootstrap, komadown, lazyrmd, learnr, lemon, liftr, lintr, manipulateWidget, MendelianRandomization, modest, modeval, multisensi, ncappc, opencpu, optiRum, pixiedust, pointblank, PreKnitPostHTMLRender, printr, PSF, PTXQC, qmethod, qwraps2, radiant.data, rAmCharts, rchallenge, RcppFaddeeva, Rd2md, ReporteRs, reprex, rgl, rite, rleafmap, rmarkdown, rmdformats, rNMF, rtable, rticles, rtimicropem, SASmarkdown, sdcMicro, ShinyItemAnalysis, sjPlot, SNSequate, SpatialEpiApp, spelling, survMisc, taxa, teachingApps, tint, tufte, tutorial, ucbthesis, umx, userfriendlyscience, vote, vqtl, xaringan
ChemometricsWithR, multisom, optCluster, Rsomoclu, som.nn, UNCLES
birdring, cdcsis, curvHDR, feature, GPareto, hdrcde, highriskzone, hypervolume, logcondens, rainbow, raptr, rugarch, RVPedigree, semiArtificial, Sim.DiffProc, sNPLS, tseriesEntropy
futile.logger, futile.matrix, lambda.tools, tawny, tawny.types
bastah, chemmodlab, chemometrics, CorReg, FindIt, gencve, GGMselect, gpDDE, lassopv, mrMLM, NHMSAR, plsRcox, Seurat
ade4TkGUI, adegraphics, adespatial, agridat, AICcmodavg, aLFQ, ALTopt, analogue, apc, ape, aqp, asbio, automap, BayesianNetwork, bbmle, bdvis, bestglm, BiBitR, BigVAR, blackbox, boolean3, c060, CADStat, caretEnsemble, CensSpatial, cg, ChainLadder, classify, coda, comato, copula, Cprob, cvTools, daewr, DAMisc, DBKGrad, DCD, dcmle, DepthProc, desplot, dfphase1, DOBAD, DoE.base, dplR, effects, eggCounts, eiwild, emdbook, EMMIXskew, EQL, eRm, ETAS, etm, eulerr, exprso, FactoMineR, faoutlier, fastR, fastR2, fChange, FishResp, FitAR, fit.models, fungible, GADMTools, gamclass, gcbd, gear, GENLIB, ggtern, Giza, GLMMRR, Gmisc, gpairs, GPfit, greport, gstat, HBP, HDCI, hexbin, hydroPSO, hydroTSM, IGM.MEA, ImputeRobust, influence.ME, IRATER, isa2, joineR, kangar00, kdecopula, Kmisc, ldbounds, lemon, lessR, lga, lme4, lmem.gwaser, lmem.qtler, LocalControl, locfit, LPR, lulcc, LumReader, maptools, mapview, matchingMarkets, Matrix, mboost, MCMCpack, metap, metaplot, mice, mirtCAT, mixPHM, MixSIAR, mopa, mountainplot, MplusAutomation, mptools, MSBVAR, msSurv, mvna, mycor, NCSampling, nlme, npROCRegression, openair, paleofire, pamm, pdp, pedometrics, Phxnlme, PKNCA, plm, plotGoogleMaps, plotMCMC, polySegratioMM, PopGenReport, predictmeans, psych, psychomix, qicharts, qrmtools, QTLRel, R2admb, R2STATS, RAM, rangeMapper, rankFD, RcmdrPlugin.HH, rcompanion, refund, RGraphics, rminer, RobLox, RobLoxBioC, robust, robustlmm, RPPanalyzer, rrcov, rrcovNA, rSARP, RSiena, RSPS, Rssa, runjags, rvinecopulib, scape, scpm, Select, sensors4plumes, sharpshootR, sisal, SixSigma, slfm, sp, spacetime, spind, SPreFuGED, SSN, stacomiR, StatCharrms, Stickbreaker, stlplus, stressr, stylo, Surrogate, survey, SWMPr, synbreed, TestingSimilarity, tiger, tigerstats, timeSeq, trajectories, trelliscope, tripEstimation, varbvs, VBmix, VineCopula, visreg, waterData, x12GUI, zoo
adegraphics, DAAG, DClusterm, gamclass, greport, Hmisc, hyperSpec, IsoriX, lessR, lfstat, mosaic, mptools, openair, pedometrics, pems.utils, penDvine, penRvine, qicharts, R2STATS, RcmdrPlugin.temis, remote, Select, sharpshootR, ShinyItemAnalysis, stressr, Surrogate, varbvs, waterData
BuyseTest, prodlim, riskRegression, SmoothHazard, timereg
faoutlier, gimme, jmv, JWileymisc, kutils, lavaanPlot, lavaan.shiny, lsl, lvnet, matrixpls, MBESS, medmod, MIIVsem, nlsem, NlsyLinks, nonnest2, piecewiseSEM, pscore, psytabs, qgraph, restriktor, semPlot, sesem, sirt, userfriendlyscience
alakazam, assertr, atlantistools, binomen, bioinactivation, carpenter, chunked, cofeatureR, condformat, corrr, cpr, crosstalk, crplyr, datastepr, ddpcr, distrr, dtplyr, easyformatr, emil, EpiModel, estprod, extdplyr, eyetrackingR, flextable, foghorn, fold, forestmodel, funModeling, gaiah, geojson, geoparser, ggforce, ggguitar, ggloop, ggplot2, ggstance, ggvis, grattan, gutenbergr, harrietr, heemod, HTSSIP, hurricaneexposure, huxtable, IAT, jqr, kntnr, lans2r, lidR, lifelogr, loopr, lplyr, manipulateWidget, markmyassignment, mason, metacoder, metaplot, mockr, modelr, mosaic, mosaicCore, mrgsolve, ncappc, networkreporting, nlstimedist, nonmemica, observer, ompr, openair, parsemsf, photobiologyInOut, PKPDmisc, plotly, poplite, purrrlyr, R6Frame, rbokeh, request, rex, rfishbase, rgho, RmarineHeatWaves, RNeXML, ropenaq, rPref, rprev, rscorecard, RSDA, rtimicropem, scrubr, shazam, simPH, SpaDES.core, sparklyr, spdplyr, srvyr, statar, statisticalModeling, survutils, sweep, tadaatoolbox, taxa, tbl2xts, tidyquant, tigger, timetk, treeplyr, unpivotr, valaddin, vqtl, webmockr, wrangle, wrswoR.benchmark, xpose4
antaresViz, eAnalytics, futureheatwaves, geoSpectral, inlmisc, jpmesh, jpndistrict, leafletCN, leaflet.minicharts, lingtypology, mapedit, mapr, metScanR, neotoma, openwindfarm, PWFSLSmoke, QRAGadget, SpatialEpiApp, stationaRy, teachingApps, tmap, trackeR, windfarmGA, worldmet
FactoMineR, FitAR, HH, lessR, meifly, mixlm, mplot
BMhyb, covmat, DoE.wrapper, EasyABC, GPfit, hydroPSO, kernDeepStackNet, mcMST, metagen, mlrMBO, optim.functions, plspolychaos, polychaosbasics, rrepast, spartan
cds, evclust, FastSF, geospt, geosptdb, gpDDE, IntegratedMRF, networkTomography, pi0, restlos, sptemExp, walkr
aroma.affymetrix, aroma.core, future, origami, PSCBS
ARTool, blmeco, BradleyTerry2, ciTools, clickR, climwin, clusterPower, cpr, DClusterm, DHARMa, eefAnalytics, effects, ez, faraway, fence, fullfact, geex, glmmsr, glmmTMB, healthcareai, HeritSeq, hmi, IMTest, inferference, intRvals, joineRML, jomo, lmem.gwaser, lmem.qtler, LMERConvenienceFunctions, lmmen, lmSupport, LSAmitR, MAGNAMWAR, mbest, MDMR, mediation, merDeriv, metamisc, metaplus, miceadds, micemd, MixMAP, MLID, mlVAR, multiDimBio, MultiRR, MXM, neuropsychology, omics, pamm, PBImisc, piecewiseSEM, PLmixed, powerbydesign, powerlmm, R2STATS, RBesT, refund, refund.shiny, reghelper, REndo, reproducer, RLRsim, rockchalk, rpql, rptR, RRreg, rstanarm, RVAideMemoire, RVFam, SensMixed, sjPlot, sjstats, skpr, SoyNAM, spacom, SPreFuGED, squid, standardize, StroupGLMM, Surrogate, surrosurv, TcGSA, themetagenomics, tnam, tukeytrend, VCA, VetResearchLMM, warpMix
afex, clickR, EMAtools, nauf, pamm, powerlmm, r2glmm, StroupGLMM, VetResearchLMM, voxel
analytics, AutoModel, betareg, BinaryEPPM, chipPCR, clusterSEs, DHARMa, dynlm, earlywarnings, elementR, FindIt, forecast, fRegression, FSA, gcmr, georob, glmx, interflex, mlogit, mnlogit, MRMR, My.stepwise, pdR, plm, rcompanion, rddtools, REndo, sjstats, smoothAPC, termstrc, treeclim, vcd
CoImp, hdrcde, KATforDCEMRI, kdecopula, LICORS, paleofire
beanz, blavaan, brms, ggdmc, hBayesDM, nauf, rstanarm
bmrm, ergm, hdpca, kantorovich, KnapsackSampling, label.switching, limSolve, matchingMarkets, mediation, mirtCAT, MoTBFs, MSCMT, netgen, partitionComparison, prcr, QCA, QCApro, sampling, systemicrisk, WhatIf
brglm2, editrules, errorlocate, MSCMT, ROI.plugin.lpsolve, xxIRT
artfima, beyondWhittle, FGN, FitAR, sarima
AdhereR, aemo, alfred, alphavantager, antaresRead, antaresViz, aoristic, APSIM, apsimr, archivist, BETS, bikedata, Biograph, boxoffice, bsam, bsplus, cardioModel, CityWaterBalance, clifro, climwin, congressbr, countyfloods, countytimezones, countyweather, CRANsearcher, cricketr, CrossVA, cruts, datadogr, dataonderivatives, dataRetrieval, dgo, drake, drsmooth, dtwSat, dynatopmodel, ecoengine, edeaR, eesim, EGRET, EGRETci, esmprep, etl, fecR, FedData, feedeR, fmbasics, fmdates, ForecastFramework, FREddyPro, geomerge, GetHFData, ggpmisc, ggspectra, gk, grattan, hansard, happybiRthday, heims, highcharter, HURDAT, hurricaneexposure, iClick, ie2misc, iki.dataclim, imaginator, incR, itunesr, Knoema, kntnr, lifelogr, machina, macleish, MazamaSpatialUtils, MODISSnow, musica, naptime, noaastormevents, npphen, nscprepr, openair, opendotaR, osmdata, pdfetch, photobiology, photobiologyInOut, PhysActBedRest, pinbasic, plusser, pointblank, pollen, pollstR, primerTree, PWFSLSmoke, qualtRics, quanteda, radiant.model, rclimateca, rdefra, RDML, recipes, RefManageR, respirometry, RGA, riem, RmarineHeatWaves, Rnightlights, rnoaa, ropenaq, rpdo, rplos, rsoi, rtide, rtimicropem, rtrends, SanFranBeachWater, SciencesPo, SensusR, SpaDES.core, spatsurv, splashr, spocc, ss3sim, stacomiR, stationaRy, stormwindmodel, stplanr, sugrrants, sweep, sweidnumbr, tibbletime, tidyRSS, tidyverse, timelineR, timelineS, timetk, TTAinterfaceTrendAnalysis, twilio, vetools, waccR, waterData, Wats, webTRISr, WRTDStidal, xesreadR, ztype
bgeva, CATkit, fdANOVA, GFD, GJRM, GMMBoost, list, MANOVA.RM, MCPAN, mdpeer, netmeta, optiSel, permutations, refund, rr, SemiParSampleSel, spray
AdhereR, ctmm, DescTools, iadf, Phxnlme, tigerstats
autoimage, ggiraphExtra, ggmap, openair, pals, pavo, perspectev, PWFSLSmoke, rbison, s2dverification, SpatialEpiApp
autoimage, bdvis, countyfloods, etasFLP, geoSpectral, ggalt, hurricaneexposure, hyfo, hypervolume, IPtoCountry, MODIS, noaastormevents, OIdata, qlcVisualize, r4ss, rbokeh, RchivalTag, rinat, rmapzen, rvertnet, smerc, SpatialExtremes, SpatialVx, stormwindmodel, swfscMisc
aoristic, BayesX, biogeo, BPEC, capm, ConR, dynatopmodel, ecospat, eeptools, EMbC, emdi, FLightR, GADMTools, gaiah, geojsonio, ggsn, ggspatial, gridsample, hydroTSM, hyfo, IceCast, incR, iSDM, LabourMarketAreas, letsR, lgcp, magclass, MapGAM, MetaLandSim, moveVis, oceanmap, openadds, opentraj, pgirmess, plotGoogleMaps, prevR, PWFSLSmoke, qlcVisualize, rangeMapper, rAvis, RchivalTag, red, rmapzen, rworldmap, secrlinear, SeerMapper, shp2graph, SpatialEpi, SpatialEpiApp, SSN, stampr, STMedianPolish, stplanr, SWMPr, tigris, trip, tweet2r, vdmR, vetools, vmsbase, wallace, windfarmGA
BEQI2, caffsim, confidence, dataCompareR, datamart, DVHmetrics, ezknitr, Kmisc, knitr, knitrBootstrap, leaflet, learnr, mirtCAT, radiant.data, rite, shinystan, skeleSim, teachingApps, tutorial
CovSelHigh, MatchIt, MatchLinReg, PSAboot, SAMUR
cem, netdiffuseR, PSAboot, Zelig, zeligverse
cwm, expands, fdcov, KATforDCEMRI, markovchain, MARX, nowcasting, NPC, perARMA, rcicr, rwt, StVAR
ahnr, backShift, BEDASSLE, BNPMIXcluster, CARBayes, CARBayesST, COUSCOus, covatest, Eagle, evolqg, face, fdasrvf, geesmv, GERGM, HRQoL, hts, ICsurv, lmmpar, lmvar, madness, MarkowitzR, matrixpls, MFKnockoffs, mgm, PCDSpline, pifpaf, PROreg, qrLMM, qrNLMM, RMark, rodd, rolypoly, sem, SharpeR, Skillings.Mack, spant, sppmix, stablespec
abcrf, ACNE, anomalyDetection, aroma.affymetrix, aroma.cn, aroma.core, bdynsys, bigstep, bingat, bmrm, bnclassify, brms, calmate, carx, cellWise, cointmonitoR, cointReg, CpGFilter, DGCA, dplR, expss, FADA, fergm, filesstrings, fslr, GJRM, GPrank, haploReconstruct, IMIFA, kernDeepStackNet, kgschart, kpmt, loo, ltmle, Luminescence, MFHD, mmtfa, mrfDepth, nandb, neurobase, peakPick, PSCBS, randomizationInference, RTransProb, SemiParSampleSel, SGP, sizeMat, statar, stm, summarytools, WGCNA
DirichletReg, DWreg, fastR2, HiDimMaxStable, idefix, lmvar, mclcar, paramlink, rDEA, splm, Zelig
bamlss, GEOmap, rNOMADS, Rquake, RSurvey, StatDA
apaTables, auRoc, predictionInterval, replicationInterval, userfriendlyscience
biospear, bujar, DIFboost, gamboostMSM, geoGAM, imputeR, SurvRank
evaluator, hierarchicalDS, pcrsim, rriskDistributions, RSurveillance, WRS2
BANFF, Bchron, Bclim, BimodalIndex, chemometrics, CHMM, ClassDiscovery, clustMD, CONDOP, ContaminatedMixt, CorReg, cytometree, diceR, flexCWM, fpc, IMIFA, integIRTy, kamila, KScorrect, MEclustnet, optCluster, otrimle, PredPsych, robCompositions, sBIC, SCORPIUS, SIBERG, TipDatingBeast, VBLPCM, vscc, yCrypticRNAs
MCMCpack, nse, prefeR, ReliabilityTheory, sizeMat, TBSSurvival
BayesLCA, BayesSingleSub, blavaan, CARBayes, coarseDataTools, dnc, evolqg, fdrDiscreteNull, HKprocess, HWEBayes, MBSGS, MCPAN, miscF, mvst, NetworkChange, noncomplyR, NSUM, PANICr, PortRisk, radmixture, SizeEstimation, sizeMat, sparsereg, spikeSlabGAM, ssmsn, starmie, StVAR, Zelig, ZeligEI
iopsych, moko, pdmod, SiMRiv, smoof, spartan
biolink, BWStest, DeLorean, devtools, heemod, m2r, nat.templatebrains, opencage, OpenML, prcbench, rgho, RSQLite, saeRobust, SIDES, toaster
catmap, ConfoundedMeta, eefAnalytics, fmri, getmstatistic, MAVIS, metagear, metagen, metamisc, metaplus, metaviz, NSM3, psychmeta, RcmdrPlugin.MA, reproducer, xmeta
AdaptFitOS, AIG, analogue, apsimr, brms, caffsim, car, causaldrf, ClusVis, colordistance, CondIndTests, cSFM, demography, DHARMa, discSurv, dlnm, drsmooth, DSpat, DSsim, dtwSat, ega, emon, ez, face, FCGR, FDboost, FLightR, fRegression, funreg, FWDselect, gamclass, gamCopula, gamRR, geoGAM, ggiraphExtra, goeveg, groc, gsg, Haplin, HLMdiag, interflex, iRegression, JWileymisc, KarsTS, kpcalg, landsat, LMERConvenienceFunctions, loa, logistf, LW1949, mbgraphic, MBHdesign, MBSGS, MFPCA, MHTrajectoryR, mirt, ModelMap, mrds, MvBinary, networkGen, npregfast, oddsratio, openair, palaeoSig, pdp, pitchRx, poptrend, QRM, QuasiSeq, r2glmm, RcmdrPlugin.HH, refund, reldist, rioja, RLRsim, rstpm2, secr, SEERaBomb, SentimentAnalysis, seqICP, sesem, simPH, sisal, slp, snht, spatstat, SSDM, stacomiR, StatDA, tripEstimation, tsDyn, tukeytrend, vegan, vows, voxel, VWPre, WhiteStripe, WVPlots, zetadiv
BaM, cati, dynr, hmi, JWileymisc, logistf, missMDA, PathSelectMP, Qtools
boxr, crul, gmailr, httr, jug, markdown, opencpu, RSocrata, servr, shiny, sofa, solvebio
addinslist, antaresViz, BETS, bupaR, Cite, citr, colourpicker, convertr, CRANsearcher, datasets.load, dplyrAssist, edeaR, EventStudy, fingertipsR, ggedit, ggExtra, ggThemeAssist, giphyr, gitgadget, googleAuthR, jpmesh, jpndistrict, manipulateWidget, mapedit, pipefittr, processmapR, processmonitR, QRAGadget, questionr, rcrossref, roadoi, shinyjs, sinew, SpaDES.addins, teachingApps
afmToolkit, AquaEnv, BIGL, BIOMASS, cdom, DBKGrad, downscale, drLumi, estprod, FatTailsR, flippant, FME, growthcurver, Luminescence, marcher, MetaLandSim, mixtox, nlstimedist, Rquake, semds, sfadv, sicegar, spant, TIMP
cplm, FME, geosptdb, glmmLasso, GMMBoost, GxM, lme4, optimx, simecol, VARsignR, wCorr
equateIRT, faoutlier, kequate, ShinyItemAnalysis, sirt
cowbell, curvHDR, dartR, feature, ks, multiDimBio, NPCirc, plot3D, prim, Sim.DiffProc, sparr
censReg, DIFlasso, EffectStars2, fastR2, frontier, LOST, MAINT.Data, micEcon, micEconAids, micEconCES, micEconIndex, micEconSNQP, mvProbit, sampleSelection, yhat
BIFIEsurvey, Conigrave, kmi, miceadds, missDeaths, momentuHMM
ddpcr, enviGCMS, kernplus, l1kdeconv, mem, Seurat, Surrogate
clusterSEs, Demerelate, gmnl, misclassGLM, mnlogit
bapred, BayesCR, bayou, bgsmtr, blavaan, BNPMediation, CensMixReg, ContaminatedMixt, correctedAUC, cSFM, derivmkts, DiceOptim, dma, EasyABC, ei, eiCompare, EMbC, EMMIXcskew, ERP, FADA, GJRM, GLMaSPU, GPGame, HiDimMaxStable, highmean, lavaan, ldbod, lmmpar, MBESS, MBSGS, mixAK, mvst, paleoTS, phytools, pmcgd, psych, Rgbp, SIBER, sn, ssmn, tsDyn, VBmix, wCorr
betareg, bujar, coin, eaf, flexmix, ockc, PSAboot, psychomix, topicmodels
AFM, BrailleR, CensSpatial, CorrToolBox, cSFM, Dpit, ecd, emdi, expands, frontier, funModeling, GeoRange, hyfo, ldhmm, mvdalab, MVN, nullabor, onewaytests, PDQutils, qat, royston, semsfa, SentimentAnalysis, ShinyItemAnalysis, sisus, ssmn, validann
FDRreg, mdsr, mosaicCalc, statisticalModeling, userfriendlyscience
ARCensReg, BayesianTools, Biograph, BIOMASS, breakpoint, bsam, CensSpatial, CIDnetworks, clustMD, decisionSupport, DelayedEffect.Design, drLumi, ei, eiCompare, frailtyEM, gems, gmnl, GUIgems, hmi, httk, iBATCGH, msmtools, optBiomarker, parfm, phytools, Rchoice, RMark, rriskDistributions, rtdists, sbart, ShinyItemAnalysis, SizeEstimation, sparsereg, surrosurv, TropFishR, womblR
ANOM, cg, CIplot, coin, Crossover, Deducer, dpcR, drc, drsmooth, easyDes, factorplot, gMCP, HBP, ICRanks, jmv, lsmeans, MAGNAMWAR, MCPAN, mixlm, multiCA, mutoss, perccalc, rms, sensR, SimComp, StatCharrms, TTAinterfaceTrendAnalysis, VetResearchLMM
blmeco, climwin, emdi, neuropsychology, phylopath, TSPred
esaddle, heemod, horserule, IMIFA, mmtfa, simstudy, VARsignR
angstroms, nat, nat.nblast, STMedianPolish, stplanr
angstroms, ClimDown, cruts, easyNCDF, erah, FedData, hyfo, IceCast, lgcp, magclass, marmap, meteoland, ncdf4.helpers, ncdump, oceanmap, qat, rbi, RchivalTag, rerddap, rsMove, s2dverification, SchemaOnRead, SDMPlay, sptemExp, xtractomatic
hdnom, mrMLM, msaenet, NHMSAR, polywog, SIS, sparsevar
BANFF, bingat, Blaunet, btergm, CINNA, degreenet, enaR, EpiModel, epinet, fergm, geomnet, ggCompNet, ggnetwork, gwdegree, intergraph, netdiffuseR, PAFit, pkggraph, SchemaOnRead, sidier, SparseTSCGM, statnet, tnam, toaster, VineCopula
BayesianNetwork, DataExplorer, EcoGenetics, pkggraph, teachingApps, textmining
acc, dynsurv, frailtySurv, fungible, GEint, georob, LDPD, mclcar, meteR, mev, miCoPTCM, momentuHMM, PCDSpline, pim, SimMultiCorrData, spef, SPPcomb
agricolae, AICcmodavg, ape, arm, BayesLCA, bkmr, boostmtree, breathtestcore, brms, broom, cardioModel, caret, carx, cem, cg, CLME, contrast, cope, coxme, cplm, dlnm, DPpackage, dsm, easyanova, easyreg, eba, emdi, faraway, fda.usc, FindMinIC, FLightR, frailtypack, gastempt, gcmr, geesmv, GeNetIt, georob, glmmTMB, Greg, GxM, IntegratedJM, investr, joineR, lme4, lmms, lqmm, lsmeans, lucid, MARSS, MBESS, mdpeer, metafor, micemd, MLID, MultiSV, mvctm, nlmeU, nlsem, OPDOE, phylopath, phytools, piecewiseSEM, PKNCA, plm, psych, psychometric, QVM, rareGE, refund, reghelper, RLRsim, rms, robustlmm, rstanarm, scan, secr, SemiPar, sjPlot, sjstats, skpr, SMPracticals, spacom, spaMM, spdep, sphet, splm, StatCharrms, StroupGLMM, Surrogate, SurvDisc, surveillance, tableone, tergm, TTAinterfaceTrendAnalysis, tukeytrend, urca, varComp, vcrpart, VetResearchLMM, warpMix
blackbox, Datasmith, GDINA, ICAOD, InfoTrad, lme4, mdpeer, minimaxdesign, nlshrink, OptimaRegion, optiSolve, pomp, ptw, RiskPortfolios, ROI.plugin.nloptr, RSDA, rugarch, seqHMM, smooth, spaMM, stpm, UncertainInterval
chinese.misc, CSeqpat, NLPutils, openNLP, phrasemachine, qdap, RSentiment, slowraker, syuzhet, textreg, textreuse, tm.plugin.alceste, tm.plugin.dc, tm.plugin.europresse, tm.plugin.factiva, tm.plugin.lexisnexis, tm.plugin.mail, tm.plugin.webmining
BaBooN, BaM, BayesTree, Biocomb, biomod2, blkbox, brglm2, car, chemmodlab, chemometrics, CoImp, CORElearn, corHMM, cpt, DAMisc, dprep, easyml, EffectLiteR, effects, EnsembleBase, exprso, factorplot, flexmix, forecast, Frames2, fRegression, gencve, glm.predict, gnm, hmi, Hmisc, hybridEnsemble, ipred, ipw, IsingSampler, kgschart, MEclustnet, mExplorer, mice, mlearning, Modeler, MXM, networktools, NeuralNetTools, NoiseFiltersR, pvsR, radiant.model, rasclass, RcmdrPlugin.BCA, RecordLinkage, rminer, RTextTools, RTransProb, RVAideMemoire, semiArtificial, ShinyItemAnalysis, SIDES, simPop, sparsebnUtils, spectral.methods, spls, SSDM, Stickbreaker, tsDyn, tsensembler, VIM
Anthropometry, erah, gpDDE, hNMF, hybridEnsemble, isotone, mboost, osd, rNMF, smacof, spant, TIMP, zetadiv
AID, BrailleR, earlywarnings, momr, moonBook, MVN, myTAI, NPMOD, NSM3, olsrr, onewaytests, quickReg, RcmdrMisc, rcompanion, royston, SixSigma, tadaatoolbox
analytics, anchoredDistr, CARS, condSURV, crs, drtmle, npbr, nse, NSM3, rpatrec, survidm, treeclim
DoE.base, eggCounts, mvPot, permutations, quhomology, vertexenum
antitrust, ARCensReg, BayesianTools, bbmle, BIGL, BinaryEPPM, blackbox, BMhyb, BMhyd, boolean3, CensSpatial, CIAAWconsensus, CIDnetworks, climwin, cmpprocess, condGEE, copula, corHMM, Countr, CountsEPPM, coxphMIC, ctmcd, ctmm, DoubleExpSeq, dynr, Epi, ExtDist, fastR2, fdapace, FDGcopulas, finiteruinprob, flexCWM, frailtySurv, gamCopula, GAS, GB2, GDINA, geex, geostatsp, glmmsr, gofCopula, GPvam, gsg, HAC, highfrequency, HRQoL, indelmiss, inferference, Infusion, IPEC, IRTpp, IsoriX, kergp, lava, lavaan, mafs, marcher, marked, markophylo, metaplus, metRology, mets, mev, mexhaz, midasr, MIIVsem, milr, mirt, misclassGLM, misreport, MixGHD, mlt, mlt.docreg, momentuHMM, mpath, MPTinR, mrds, MSGARCH, multicmp, optimr, optimx, OUwie, pacotest, phytools, pi0, pifpaf, PLmixed, PrevMap, ProbitSpatial, PROreg, pssm, Rcgmin, RealVAMS, Renext, robustBLME, robustloggamma, robustvarComp, rodd, rstpm2, rugarch, sdprisk, sensR, seqHMM, smam, sn, sns, spfrontier, StableEstim, stdReg, stochprofML, StVAR, SurvRegCensCov, tcpl, ThreeArmedTrials, ThresholdROC, timereg, TKF, umx, VCA, vcrpart, xmeta
iClick, opentraj, PWFSLSmoke, SWMPr, worldmet
phrasemachine, qdap, RSentiment, slowraker, syuzhet
aphid, backblazer, base64, bcrypt, geosapi, httr, icesSAG, ids, keyring, mongolite, opencpu, phylogram, pinnacle.API, reconstructr, RPresto, RSelenium, rtweet, scidb, secret, SensusR, splashr
CLME, CUFF, emdi, EventStudy, gsrc, ie2misc, inspectr, joinXL, kutils, memapp, mrMLM, reproducer, rio, seasonalview, soilcarbon, stplanr, tatoo, tigerhitteR, TROM, vanddraabe
BioGeoBEARS, boolean3, calibrar, CatDyn, CensSpatial, Countr, covmat, ecd, ExtDist, gear, invGauss, ldhmm, LifeHist, marked, mrds, MRS, mvord, QuantumClone, rankdist, REndo, ROI.plugin.optimx, spfrontier, Synth
filesstrings, nandb, reportr, RNiftyReg, tractor.base
brainGraph, cifti, dti, gdimap, hNMF, oasis, oro.dicom, oro.pet, papayar, spm12r, vesselr, vows, voxel, WhiteStripe
basefun, expandFunctions, HoRM, mpoly, OPDOE, PDQutils, sadists
bridger2, chipPCR, elementR, OasisR, OutlierDM, referenceIntervals, vmsbase
BrailleR, brr, carpenter, cleanEHR, CONS, dataMaid, DCM, desctable, docxtools, eclust, evaluator, funModeling, IAPWS95, MplusAutomation, mscstexta4r, mscsweblm4r, PCADSC, QVM, rapport, rapportools, rmda, RSDA, SciencesPo, stremr, summarytools, survivALL, userfriendlyscience, veccompare
aslib, ecr, emdi, llama, mcMST, mlr, mlrMBO, performanceEstimation, saeSim
biogram, HiDimMaxStable, hyper2, matchingMarkets, mpoly, permutations, spray, untb
autoBagging, aVirtualTwins, blkbox, EcoGenetics, EFS, fifer, IPMRF, mboost, multilevelPSA, PredPsych, PSAboot, RFinfer, rminer, simPop, synthpop
activity, BayesFactor, caretEnsemble, csabounds, easyml, easyVerification, extremeStat, faoutlier, fragilityindex, ftDK, GCalignR, gcite, HeritSeq, HYRISK, mirtCAT, phylopath, predictionInterval, rangeBuilder, rdwd, replicationInterval, ResourceSelection, RFinfer, rptR, SCORPIUS, Seurat, SimDesign, slimrec, sNPLS, sperrorest, vesselr, warbleR, WikiSocio
CIDnetworks, ctmm, DiceOptim, GPareto, hmi, lavaan, mvord
afex, car, lmSupport, nauf, piecewiseSEM, predictmeans, r2glmm, simr, StroupGLMM, tukeytrend
easyml, powerlmm, sperrorest, vesselr, WhatIf
chemometrics, copula, CosmoPhotoz, DetR, ftsa, lcopula, MAINT.Data, OutlierDM, rmgarch, rospca, rrcov, rrcovHD, smart, specmine, sprm
adeba, ahnr, FastKNN, hypervolume, iSDM, labelrank, netcom, UNCLES
dartR, mmod, PopGenReport, poppr, rmetasim, skeleSim, strataG
apricom, DIFboost, DIFlasso, gpDDE, hdnom, mvdalab, pensim
bipartite, brainGraph, codyn, cwm, NPC, pRF, RAM, randomizationInference, rankdist, VdgRsm
BoSSA, coalescentMCMC, CommT, corHMM, indelmiss, markophylo, OUwie, paleotree, phytools, poppr, RADami, RAM, rdiversity, recluster, rwty, SeqFeatR, strataG, timetree, TKF, treespace
CINNA, EcoGenetics, FAMILY, NPflow, omics, qiimer, SCORPIUS, timeSeq
adephylo, BMhyb, BMhyd, PCPS, phyext2, phylocanvas, phylosignal, phyloTop, SigTree
BMhyb, BMhyd, BPEC, brranching, DDD, evobiR, hisse, monogeneaGM, OUwie, paleotree, PBD, PhyInformR, phylocurve, PhySortR, RAM, rdiversity, recluster, RPANDA, Rphylopars, sensiPhy, TKF, treeplyr
betapart, DAMOCLES, lefse, metricTester, nodiv, PCPS, pez, recluster
asbio, plotKML, shapeR, sparkTable, VBmix
bdynsys, censReg, frontier, micEcon, productivity, Rchoice, splm
Blaunet, BNSP, ChaosGame, cpr, dnc, EthSEQ, evoper, mixedsde, partialAR, smoof, XGR
aoristic, fetchR, GSIF, vegtable, VTrack
adapr, antaresViz, arulesViz, BayesianNetwork, BETS, bridger2, bulletr, ChocoLattes, colordistance, dartR, DEploid, eAnalytics, EcoGenetics, eechidna, enpls, geomnet, geoSpectral, ggalt, ggenealogy, ggmosaic, ggplotgui, iMediate, LumReader, manhattanly, memapp, MendelianRandomization, metScanR, Plasmidprofiler, RBMRB, refund.shiny, rrr, RtutoR, Seurat, shinyHeatmaply, ShinyItemAnalysis, smoof, teachingApps, themetagenomics, WVPlots, yuimaGUI
ABCanalysis, AcuityView, AHMbook, aqp, asbio, bcRep, bdvis, BioGeoBEARS, BoSSA, cems, cncaGUI, convoSPAT, cricketr, drc, ei, eiCompare, fastLink, fifer, FSA, GFD, gmnl, HTSCluster, IMIFA, IntClust, IsotopeR, JBTools, KernSmoothIRT, kineticF, LBSPR, LinkageMapView, LogicForest, LW1949, MANOVA.RM, marmap, MatrixCorrelation, metricTester, mstherm, mutoss, ncdf.tools, NPCirc, oceanmap, phonR, phytools, plotKML, plotSEMM, poliscidata, PReMiuM, qdap, Rchoice, rminer, rpst, SAGA, simr, smacpod, sNPLS, spartan, surv2sampleComp, vmsbase, xhmmScripts, yhat
apercu, chemmodlab, chemometrics, ChemometricsWithR, chillR, cocoreg, EasyABC, enpls, groc, imputeR, IntClust, LINselect, mixlm, OHPL, plsRcox, rminer, rrcovHD, RVAideMemoire, soil.spec, specmine, spls, tsensembler
AFM, BayesBD, CATkit, classifierplots, colordistance, colourlovers, d3heatmap, dplR, fDMA, Fgmutils, ggmap, ggsn, HiveR, icesSAG, ICtest, imager, imguR, ionicons, iplots, kgschart, leaflet, lessR, loa, mapview, monographaR, multipanelfigure, nasadata, neuropsychology, OpenImageR, patternplot, PWFSLSmoke, qgraph, qrencoder, rcdk, readbitmap, ReporteRs, retistruct, RgoogleMaps, RMThreshold, rosm, RXKCD, SOFIA, StereoMorph, survivALL, Thermimage, tikzDevice, trackdem, trelliscope, zooimage
CCTpack, CDM, fakeR, radiant.design, stablespec, umx
AssetPricing, basefun, ecd, expandFunctions, ggpmisc, hwwntest, mpoly, OPDOE, partitions, photobiology, preseqR, smacof, sysid, tolBasis, untb
AdapSamp, admixturegraph, AFM, ahnr, batteryreduction, bdynsys, binsmooth, briskaR, cdfquantreg, cholera, CosW, dpcR, eemR, EMSC, fdapace, GEint, GUILDS, iemisc, inctools, IRISMustangMetrics, IRISSeismic, MatrixCorrelation, mixlm, mousetrap, mutSignatures, netcom, nomogramEx, PEIP, QuasiSeq, rCAT, rospca, RTransProb, SADISA, SecKW, semds, SinIW, soundecology, spant, survivalsvm, TanB
Biocomb, biomod2, BioPET, biospear, blkbox, chemmodlab, easyml, ebmc, EFS, FAMILY, healthcareai, LANDD, LEGIT, LogisticDx, LOGIT, mlDNA, quantable, randomUniformForest, reportROC, SCGLR, stepPenal, ThresholdROC, tpAUC, TrendInTrend
bnnSurvival, IntClust, ipred, ModelGood, multimark, SuperRanker
abbyyR, alakazam, ari, batchtools, BIGL, bigrquery, csabounds, dat, elevatr, FFTrees, fuzzr, GGally, gk, greta, hypervolume, MatrixCorrelation, openSTARS, plsVarSel, rncl, shazam, SNSequate, stationaRy
emojifont, ggmap, ggtern, PTXQC, synthpop
bcRep, blackbox, cccd, classiFunc, dtwSat, factorMerger, HighDimOut, Infusion, LDAvis, mtconnectR, mutSignatures, preText, spaMM, ssc, SSL, starmie, vdg, warbleR
ck37r, clustermq, cooccurNet, dsmodels, flifo, gqlr, heemod, hIRT, httping, kimisc, KSD, linear.tools, m2r, narray, radiant.data, radiant.model, radiant.multivariate, rbokeh, rmonad, summarytools
ashr, BANFF, BayesSpec, congressbr, DAMisc, DClusterm, fakeR, mpath, opticut
copula, FCGR, GenWin, optiSel, phtt, RPANDA
AID, auto.pca, broom, CCTpack, CensSpatial, condir, CorrMixed, CorrToolBox, CTTShiny, dtables, evaluator, GeomComb, getmstatistic, GJRM, ionr, IRTShiny, jmv, lavaan.shiny, likert, lmSupport, lrmest, lvnet, manifestoR, matrixpls, mdpeer, mixKernel, modeval, mousetrap, multilevelPSA, MVN, neuropsychology, OpenRepGrid, prepdat, PSAboot, psytabs, qgraph, qmethod, qrLMM, qrNLMM, quickReg, QVM, radiant, radiant.basics, radiant.data, radiant.model, radiant.multivariate, RegularizedSCA, rmcorr, sdmvspecies, ShinyItemAnalysis, SimMultiCorrData, sjmisc, sjPlot, spartan, traj, TriMatch, userfriendlyscience
ahnr, alphavantager, anomalyDetection, apa, ari, atlantistools, automagic, banR, blscrapeR, BradleyTerryScalable, breathtestcore, breathteststan, bsplus, bupaR, cdcfluview, censys, cepR, childsds, clustermq, congressbr, corrr, countyweather, cymruservices, datadogr, dbplyr, desctable, dexter, DiagrammeR, diceR, docxtractr, edeaR, eesim, epidata, esc, estatapi, evaluator, EventStudy, exampletestr, fbar, fcuk, fingertipsR, flextable, ftDK, fuzzr, fuzzyjoin, gdns, geoparser, getCRUCLdata, ggeffects, gglogo, ggmosaic, ggpubr, ggstance, giphyr, gitlabr, googleAnalyticsR, googledrive, googlesheets, grattan, GSODR, gutenbergr, highcharter, hrbrthemes, HURDAT, hurricaneexposure, icpsrdata, imager, ImputeRobust, inferr, influxdbr, jpmesh, kntnr, kokudosuuchi, livechatR, longurl, modelr, modeval, mschart, nandb, naniar, normalr, officer, olsrr, perccalc, pewdata, phylopath, pinnacle.API, PKPDmisc, plotly, pointblank, pollen, pollstR, postlightmercury, prcr, processmapR, purrrlyr, qiitr, readOffice, recipes, RevEcoR, rmapzen, rsample, RSQLServer, rtypeform, scanstatistics, SCORPIUS, sergeant, shiny.semantic, ShinyTester, sjlabelled, sjmisc, sjPlot, sjstats, snakecase, sperrorest, splashr, spup, starmie, sugrrants, surveydata, survminer, survutils, tatoo, tensorr, tibbletime, tidycensus, tidygenomics, tidyquant, tidyr, tidyRSS, tidyselect, tidytext, tidyverse, timetk, twilio, uaparserjs, ukbtools, unpivotr, uptasticsearch, useful, valaddin, vdiffr, veccompare, visdat, wand, webTRISr, widgetframe, widyr, WRTDStidal, xesreadR, zeligverse
easypower, lmSupport, sjstats, tadaatoolbox, userfriendlyscience
bootnet, diveRsity, elasticIsing, EstimateGroupNetwork, gimme, graphicalVAR, IATscores, IsingFit, lvnet, mlVAR, NetworkComparisonTest, networktools, semPlot, SparseLearner, veccompare
BayesNetBP, lineup, lmem.gwaser, lmem.qtler, PopVar, qtlcharts, synbreed, vqtl
BB, CEGO, dartR, directlabels, dti, earlywarnings, expectreg, FinCovRegularization, FindIt, flexsurv, fPortfolio, GENLIB, goric, gromovlab, hmmm, hybridEnsemble, ic.infer, kdecopula, lavaan, LCF, limSolve, list, lmmen, mafs, mboost, mcprofile, mistral, mixKernel, MixtureInf, mlt, monomvn, MoTBFs, NlcOptim, nodeHarvest, npbr, npsp, opera, optiSel, optrdd, orderedLasso, parma, pencopulaCond, penDvine, penRvine, phangorn, pi0, pracma, qrsvm, quadprogXT, radmixture, restriktor, RiskPortfolios, robustrao, rodd, ROI.plugin.quadprog, RSSL, ScreenClean, simPH, stm, tseries, uniReg, varComp
clustRcompaR, gofastr, preText, stm, textstem
BatchGetSymbols, bdrift, creditr, DMwR, DMwR2, highcharter, HoRM, qrmtools, tawny, tawny.types, tseries, TSmisc, yuimaGUI
apTreeshape, CADStat, car, chipPCR, cmprskQR, cobs, crs, diveMove, erah, esreg, gapfill, georob, MAVIS, MCMCpack, MTE, mvctm, MXM, NCA, np, NSM3, opera, OutlierDM, pez, plotluck, ptest, QRank, qrLMM, qrmix, qrNLMM, qte, Qtools, quantoptr, quantspec, RATest, rms, RPPanalyzer, SGP, sitar, smoothAPC, stR, TTCA, WEE, WRTDStidal, Zelig
clusterSim, psytabs, pubmed.mineR, RcmdrPlugin.temis, RenextGUI, RSCABS, StatCharrms, umx, VRPM
agRee, bamdit, boral, classify, MixSIAR, SeqFeatR, upmfit
ASSISTant, batchtools, BaTFLED3D, charlatan, choroplethr, clustermq, coala, crosstalk, crul, datastepr, data.tree, DBItest, dbplyr, desc, dgo, diffrprojects, distcomp, dplyr, elementR, etseed, fauxpas, fiery, flextable, fuzzywuzzyR, GauPro, geojsonR, geometa, GeoMongo, geosapi, glmmsr, googleAuthR, gqlr, greta, gsrc, healthcareai, hoardr, homomorpheR, httr, jaatha, jmv, jmvcore, jug, keras, keyring, lifelogr, loopr, lumberjack, mcparallelDo, medmod, mkin, mschart, officer, palm, pbdZMQ, pivottabler, plumber, poio, polmineR, prcbench, processx, progress, projmanr, PythonInR, QuantTools, R6Frame, rchess, rcrossref, RDML, readr, redux, reqres, request, ring, rjsonapi, RKEEL, rmonad, rodeo, routr, roxygen2, rstack, rtext, rtimicropem, rtson, scales, shiny, shopifyr, simcausal, simmer, sofa, sourceR, storr, stoRy, stremr, taxa, telegram, testthat, text2vec, textTinyR, tidygraph, tmlenet, TOSTER, valuer, vdiffr, vmsbase, walrus, webmockr, Wmisc
AHMbook, constrainedKriging, geoR, georob, lgcp, raptr, SpaDES.core, SpaDES.tools, spatsurv, windfarmGA
aCRM, aLFQ, assignPOP, aVirtualTwins, bagRboostR, Biocomb, biomod2, blkbox, CALIBERrfimpute, cem, chemmodlab, ck37r, CondIndTests, CONDOP, conformal, CovSelHigh, cpt, easyml, ebmc, ecospat, EFS, EnsembleBase, exprso, FFTrees, fifer, forestFloor, FSelector, fuzzyforest, gamclass, gencve, ggRandomForests, horserule, hybridEnsemble, hyperSMURF, imputeMissings, IPMRF, kernelFactory, LINselect, m2b, mlearning, Modeler, mopa, NAM, NCSampling, nodeHarvest, NoiseFiltersR, nonlinearICP, nproc, OOBCurve, optBiomarker, OTE, PredPsych, preprocomb, preproviz, pRF, randomForest.ddR, randomForestExplainer, rasclass, REPTILE, RFmarkerDetector, rfUtilities, rminer, RPtests, RTextTools, spm, SPOT, SSDM, synthpop, TLBC, vita, VSURF, zoon
acebayes, cda, cepp, copBasic, DiceOptim, FDGcopulas, GPareto, MBHdesign, mcGlobaloptim, minimaxdesign, MRFA, optim.functions, qualpalr
abcrf, AmyloGram, healthcareai, iqspr, missRanger, mopa, OOBCurve, SCORPIUS, Seurat, simPop, tsensembler
diceR, FuzzyMCDM, MCDM, optCluster, SparseLearner
ck37r, gjam, ldbod, lidR, ProbitSpatial, RsimMosaic, spatialEco, unbalanced
addinslist, awsjavasdk, batchtools, binman, ccafs, finch, getCRUCLdata, getlandsat, hoardr, learnr, liteq, mregions, nat.templatebrains, openadds, opencpu, packagetrackr, pangaear, pleiades, rnoaa, smapr, sparklyr, tesseract, tidycensus, tigris, TR8, wand
accSDA, FACTMLE, HDclassif, lfda, roots, stocc
AHMbook, ambhasGW, APfun, ASIP, BAT, bfast, biogeo, Biolinv, BIOMASS, birdring, bnspatial, bossMaps, briskaR, cartography, ccafs, cdlTools, CensSpatial, chillR, clhs, CONS, countyweather, crawl, cruts, ctmm, DiversityOccupancy, dynatopmodel, EcoGenetics, ecospat, elevatr, ENMeval, esmisc, FedData, FLightR, ForestTools, FREddyPro, gaiah, gdalUtils, GeNetIt, geomerge, GeoRange, getCRUCLdata, ggspatial, graticule, Grid2Polygons, gridsample, GSIF, hddtools, hypervolume, IceCast, icosa, INLAutils, inlmisc, ipdw, iSDM, IsoriX, kehra, lakemorpho, landscapeR, leaflet, lgcp, lidR, link2GI, Luminescence, mapview, marmap, memgene, MetaLandSim, meteo, MIAmaxent, mkde, MODISSnow, MODIStsp, momentuHMM, monographaR, moveVis, mptools, multimark, ncdf.tools, nodiv, openSTARS, OpenStreetMap, opentraj, osrm, paleofire, patternize, phenopix, plotGoogleMaps, plotKML, prism, psda, qlcVisualize, QRAGadget, quadmesh, quickmapr, quickPlot, rangeMapper, rasterKernelEstimates, rAvis, RchivalTag, red, reproducible, rleafmap, rLiDAR, RmarineHeatWaves, Rnightlights, rpostgis, RQGIS, rsMove, rSPACE, RStoolbox, RSurvey, rWind, sdm, SDMPlay, sdmvspecies, secr, shadow, sirad, smapr, soilDB, SpaDES.core, SpaDES.tools, spatialEco, spatsurv, speciesgeocodeR, spectral.methods, spex, sptemExp, spup, SSDM, stampr, stplanr, tabularaster, TileManager, tmap, tmaptools, trackdem, trackeR, trip, unmarked, vein, velox, wallace, windfarmGA, wrspathrow, zonator, zooaRchGUI
biomod2, cati, gfcanalysis, IsoriX, lulcc, moveVis, mptools
aroma.affymetrix, aroma.cn, aroma.core, fulltext, PSCBS, repmis, R.filesets, R.rsp, scholar, stepR
betapart, blackbox, CausalFX, hitandrun, Infusion, kantorovich, pavo, PLMIX, sisus
BCA, BiodiversityR, learnstats, RcmdrPlugin.aRnova, RcmdrPlugin.BiclustGUI, RcmdrPlugin.DoE, RcmdrPlugin.EACSPIR, RcmdrPlugin.EZR, RcmdrPlugin.FactoMineR, RcmdrPlugin.FuzzyClust, RcmdrPlugin.GWRM, RcmdrPlugin.HH, RcmdrPlugin.IPSUR, RcmdrPlugin.lfstat, RcmdrPlugin.MA, RcmdrPlugin.NMBU, RcmdrPlugin.orloca, RcmdrPlugin.PcaRobust, RcmdrPlugin.qual, RcmdrPlugin.RiskDemo, RcmdrPlugin.RMTCJags, RcmdrPlugin.sampling, RcmdrPlugin.SCDA, RcmdrPlugin.SLC, RcmdrPlugin.sos, RcmdrPlugin.survival, RcmdrPlugin.TeachingDemos, RcmdrPlugin.temis, REST
adegraphics, aoristic, aqp, aroma.core, atlantistools, BaTFLED3D, BayesNetBP, bibliometrix, bioplots, cape, cholera, clifro, clustMixType, CorporaCoCo, DClusterm, deBInfer, DiagrammeR, diceR, disco, dlstats, dtwSat, dynsbm, edgar, EMbC, enviGCMS, EpiCurve, EpiModel, ergm.ego, eurostat, EventStudy, extremeStat, FREddyPro, funModeling, GADMTools, GGally, ggalt, ggplotgui, GPrank, granovaGG, heatmaply, HH, hierarchicalSets, HiveR, horserule, HRQoL, hurricaneexposure, imageData, INLAutils, inpdfr, iprior, iRF, LambertW, LBSPR, leaflet, LICORS, LinkageMapView, loa, LogisticDx, lpbrim, LPStimeSeries, lvplot, makeFlow, mapr, mapStats, marcher, mau, MCDA, mcPAFit, melviewr, mem, memapp, metacoder, metaviz, metScanR, micromapST, mixOmics, MixSIAR, MKmisc, Mondrian, mousetrap, MSG, msr, mstate, mstherm, MullerPlot, multiDimBio, MultiPhen, mvcwt, mvtboost, myTAI, ncdf.tools, NEArender, NetRep, NetworkChange, NMF, noaastormevents, oaColors, openair, opera, OutbreakTools, PAFit, patPRO, pcaBootPlot, pems.utils, phantom, pheatmap, PhyInformR, pkggraph, Plasmidprofiler, platetools, plotKML, plotluck, plotly, pqantimalarials, PROreg, psd, PTXQC, PubMedWordcloud, PWFSLSmoke, quantable, quickPlot, rafalib, RAM, rangeMapper, raptr, rasterVis, rbefdata, RcmdrPlugin.KMggplot2, RcmdrPlugin.temis, rmcorr, RNCEP, RobLox, RobLoxBioC, RSA, satscanMapper, scales, SCORPIUS, SeerMapper, Seurat, sharpshootR, shinyHeatmaply, SigTree, sisus, smoof, solaR, SOMbrero, sorvi, SpatialEpiApp, spatsurv, specmine, spectral.methods, spectrolab, spind, stacomiR, statebins, statnetWeb, StMoMo, strataG, svdvis, SWMPr, tagcloud, tcpl, tdr, TELP, TippingPoint, tmap, tmaptools, toaster, TraMineR, TraMineRextras, treemap, TROM, userfriendlyscience, vistime, waffle, wallace, Wats, WeightedCluster, windfarmGA, WRTDStidal, xseq, zonator
DiffusionRgqd, DiffusionRimp, DiffusionRjgqd, FLightR, mrgsolve, pirate, TED
catSurv, Cyclops, dbmss, FLSSS, GERGM, lamW, markovchain, microclass, milr, MultiBD, parallelDist, patternplot, qualpalr, quanteda, re2r, roll, rPref, skm, SpatMCA, SpatPCA, text2vec
benchr, GCPM, rFTRLProximal, textmineR, textreuse
climwin, flippant, nandb, recipes, tsensembler, TSS.RESTREND
ALA4R, AmostraBrasil, archivist, atsd, BETS, bigml, BioInstaller, biomartr, biospear, blsAPI, BrownDog, Causata, cdlTools, clifro, creditr, dams, datamart, datasus, demography, Diderot, dvn, Ecfun, ecoseries, emuR, fbRads, feedeR, FinCal, GetHFData, GetTDData, gfcanalysis, gimms, gmapsdistance, gProfileR, GuardianR, h2o, hddtools, HierO, HMDHFDplus, hoardeR, interAdapt, IRISMustangMetrics, IRISSeismic, lemon, metacoder, metagear, metScanR, MODIS, MODISSnow, MODIStsp, moveVis, nhlscrapr, nowcasting, Ohmage, OIdata, OpasnetUtils, osrm, OutbreakTools, paleobioDB, phylosignal, placement, plusser, polidata, pubmed.mineR, PubMedWordcloud, PWFSLSmoke, qdap, qdapTools, QuantTools, RAdwords, rainfreq, rAvis, rbefdata, RbioRXN, Rbitcoin, rClinicalCodes, RCriteo, rdatamarket, rDVR, rechonest, Reol, restfulr, reutils, revgeo, Rexperigen, RForcecom, rglobi, Rilostat, rite, RKlout, RMixpanel, rNOMADS, ROAuth, ROpenDota, ROpenWeatherMap, RProtoBuf, rpubchem, RQGIS, rsconnect, rsdmx, RSmartlyIO, rsMove, rsolr, RStripe, rtematres, rusda, RYandexTranslate, rYoutheria, seeclickfixr, sidrar, SocialMediaLab, SocialMediaMineR, sophisthse, sotkanet, spatialEco, stringgaussnet, swirl, switchr, Thinknum, tibbrConnector, tm.plugin.webmining, TPEA, TR8, translate, translateR, treebase, ukgasapi, umx, uptimeRobot, warbleR, webchem, WikiSocio, worldmet, XML2R, ZillowR, zoon
DCD, dexter, dynr, idefix, mcompanion, MSCMT, partitionComparison, quantoptr
abbyyR, abcrf, alakazam, alphavantager, ArchaeoPhases, asciiSetupReader, banR, bigrquery, biomartr, breathtestcore, cdcfluview, cleanNLP, dataonderivatives, datapasta, dataRetrieval, datasus, ddpcr, DiagrammeR, DMwR2, dwapi, ecoseries, eemR, epidata, esc, esmisc, estatapi, etl, eurostat, evaluator, EventStudy, eyelinker, farff, fastqcr, FedData, filesstrings, fingertipsR, GCalignR, geojsonio, geomnet, GetHFData, getlandsat, GetLattesData, ggCompNet, ggguitar, ggplotgui, googlesheets, GSODR, gutenbergr, haven, HURDAT, hypoparsr, jpmesh, jpndistrict, kableExtra, macleish, metacoder, mljar, mosaic, myTAI, nandb, ncappc, neuroim, openadds, openwindfarm, pdfetch, photobiologyInOut, PKPDmisc, pointblank, predatory, PWFSLSmoke, radiant.data, rcv, readODS, REDCapR, rgho, Rilostat, Rnightlights, rpdo, rPraat, RQGIS, rrefine, rsoi, rtimicropem, SanFranBeachWater, sasMap, sergeant, ShinyTester, sparklyr, starmie, stationaRy, stplanr, sugrrants, survivALL, TeXCheckR, tidycensus, tidyquant, tidyverse, timetk, traits, ukbtools, valr, webreadr, webTRISr, worldmet, xpose4
BAYESDEF, BEACH, chillR, CONS, DCM, DLMtool, dpcR, elementR, evaluator, GerminaR, GetTDData, ggplotgui, ie2misc, joinXL, lessR, Luminescence, memapp, NPMOD, photobiologyInOut, popprxl, QuantTools, RcmdrMisc, RDML, readtext, rio, RLumShiny, SchemaOnRead, shinyHeatmaply, textreadr, tidyverse, TR8, xlutils3, zooaRchGUI
apaStyle, clickR, Fgmutils, Mediana, WordR
aqp, automap, benchmark, Biograph, blkbox, bold, climwin, cocoreg, CommT, contoureR, drLumi, dynsurv, episensr, evoper, ezsim, gcbd, GGally, imageData, intsvy, kobe, LOGIT, MEGENA, metacoder, MetaIntegrator, Methplot, MissingDataGUI, MixSIAR, moveVis, multilevelPSA, MultiSV, opentraj, PopGenReport, rags2ridges, RAM, rmda, simTool, spikeSlabGAM, SurvRank, timeSeq, TR8, TTAinterfaceTrendAnalysis, WRS2
docker, fuzzywuzzyR, GeoMongo, greta, keras, kerasR, meltt, RQGIS, spacyr, tensorflow
ambhasGW, AmostraBrasil, aoristic, APfun, ASIP, BIEN, birdring, bossMaps, briskaR, camtrapR, capm, cdlTools, ConR, ctmm, dtwSat, dynatopmodel, EcoGenetics, eechidna, elevatr, FedData, fetchR, FLightR, gdalUtils, geojsonio, geoSpectral, geotopbricks, gfcanalysis, ggspatial, gridsample, GSIF, GSODR, hyfo, icosa, inlmisc, intamap, iSDM, jpmesh, kokudosuuchi, LabourMarketAreas, lakemorpho, landsat8, letsR, link2GI, MazamaSpatialUtils, meteo, meteoland, MODIS, MODIStsp, npphen, OasisR, OpasnetUtils, openSTARS, OpenStreetMap, opentraj, paleofire, patternize, pgirmess, plotGoogleMaps, plotKML, PopGenReport, postGIStools, quickmapr, quickPlot, rangeMapper, rAvis, rcanvec, rCAT, rdefra, red, redlistr, riverdist, rmapshaper, rmapzen, Rnightlights, rosm, RQGIS, rsMove, RStoolbox, RSurvey, rtop, rWBclimate, SDMPlay, secrlinear, SeerMapper, sensors4plumes, SiMRiv, smapr, spatialEco, SpatialEpiApp, SpatialPosition, sperich, sptemExp, SSN, stampr, stplanr, tigris, tmap, tmaptools, tripEstimation, tweet2r, vdmR, vein, velox, wallace, windfarmGA, wrspathrow, wux, zonator, zoon
boolean3, DiceOptim, DynTxRegime, GPareto, HYRISK, MatchIt, quantoptr
BIEN, birdring, bossMaps, briskaR, cartogram, cartography, ConR, constrainedKriging, DSpat, DSsim, dynatopmodel, emdi, FedData, fetchR, FLightR, ForestTools, GADMTools, gaiah, GeNetIt, geoaxe, geojsonio, GeoXp, gfcanalysis, Grid2Polygons, gridsample, hierarchicalDS, hyfo, hypervolume, incR, inlmisc, LabourMarketAreas, lakemorpho, leafletCN, letsR, lgcp, lidR, MazamaSpatialUtils, MetaLandSim, MODIStsp, MTA, OasisR, osmplotr, osrm, pgirmess, postGIStools, psda, quickmapr, rangeBuilder, rangeMapper, raptr, RchivalTag, red, redlistr, rKIN, Rnightlights, rpostgis, RStoolbox, RSurvey, SDraw, shadow, spatialEco, SpatialEpiApp, SpatialPosition, spatsurv, spsurvey, sptemExp, SSN, stampr, stplanr, tigris, TileManager, tmap, tmaptools, vdmR, vein, velox, wallace, waver, wildlifeDI, windfarmGA, wrspathrow, wux
AFM, AIG, analogueExtra, Anthropometry, archiDART, bdlp, BIGL, Biocomb, biplotbootGUI, Blaunet, cems, cifti, clusterSim, cncaGUI, colourvision, corr2D, cowbell, cpr, crs, curvHDR, dartR, DiffusionRgqd, DiffusionRimp, DiffusionRjgqd, dprep, ecdfHT, EMMIXcskew, feature, forestFloor, gbp, gge, GrammR, graphscan, HiveR, homals, HUM, imPois, iSDM, KarsTS, KernSmoothIRT, ks, lidR, LMERConvenienceFunctions, LOST, matlib, mixOmics, monogeneaGM, Morpho, msir, MSQC, msr, multibiplotGUI, nanop, neuroim, NPCirc, OceanView, OpenRepGrid, pals, pca3d, phylocurve, Polychrome, prim, rase, restlos, retistruct, rForest, rglwidget, rLiDAR, RnavGraph, RockFab, Rquake, rsml, scpm, SDD, SEERaBomb, shapes, shinyRGL, Sim.DiffProc, smoothAPC, sNPLS, spatgraphs, spatsurv, specmine, sppmix, StatDA, stR, Surrogate, symbolicDA, termstrc, tolerance, TSCS, vegan3d, vennplot, windfarmGA
CRF, fPortfolio, gemtc, HotDeckImputation, kantorovich, MCDA, MSCMT, MultAlloc, networkTomography, npbr, otinference, parma, PortfolioOptim, productivity, ROI.models.miplib, ROI.plugin.glpk
choroplethr, energyr, ggmap, LearnGeom, loa, PopGenReport, PWFSLSmoke, RAM, raptr, windfarmGA
bayesDem, Blaunet, clusterfly, GrammR, inpdfr, maGUI, melviewr, mrMLM, PKgraph, playwith, plfMA, rattle, rggobi, RQDA, RSCABS, Rz, stacomiR, StatCharrms, strvalidator, VIMGUI, WMCapacity, x12GUI
boxr, dpmr, psData, ukds, userfriendlyscience
BACCT, bamdit, bayescount, bayesmix, BayLum, bdpopt, BEST, BTSPAS, CCTpack, crmPack, dclone, EasyMARK, gemtc, HydeNet, jagsUI, MixSIAR, morse, RcmdrPlugin.RMTCJags, SIBER, TreeBUGS, tRophicPosition, zooaRchGUI
asymmetry, autothresholdr, AWR, AWR.Athena, AWR.Kinesis, AWR.KMS, awsjavasdk, BACA, BEACH, blastula, blkbox, boilerpipeR, CADStat, ChoR, coreNLP, DecorateR, Deducer, DeducerExtras, expands, G2Sd, helixvis, hive, joinXL, KoNLP, llama, mailR, matchingMarkets, mutossGUI, Myrrix, Myrrixjars, NoiseFiltersR, openNLP, openNLPdata, OpenStreetMap, pointblank, PortfolioEffectEstim, PortfolioEffectHFT, prcbench, rcdk, ReporteRs, ReporteRsjars, RFreak, RKEA, RKEAjars, RKEEL, RMOAjars, rMouse, RSQLServer, RWeka, RWekajars, RxnSim, SqlRender, subspace, subspaceMOA, textmining, TSsdmx, wordnet, XLConnect, XLConnectJars
algorithmia, AntWeb, aop, argparse, BETS, blsAPI, Causata, d3Network, dwapi, ecoseries, edgebundleR, enrichR, facebook.S4, geonames, GetoptLong, ggmap, helsinki, james.analysis, jmvcore, languagelayeR, metScanR, nhlscrapr, OpasnetUtils, OutbreakTools, paleobioDB, pinnacle.API, prettymapr, RAdwords, rbefdata, RBMRB, rClinicalCodes, restfulr, rethinker, rfisheries, rgeoapi, rglobi, rnrfa, rosm, rpinterest, rsolr, sidrar, SmarterPoland, SocialMediaLab, solr, sotkanet, StereoMorph, stmBrowser, structSSI, tibbrConnector, tutorial, twitteR, uptimeRobot, vdmR, warbleR, WebGestaltR
ajv, AmostraBrasil, bigml, datamart, FAOSTAT, GuardianR, knockoff, LDAvis, MODIStsp, OData, Ohmage, plusser, pxweb, Rbitcoin, rdatamarket, RedditExtractoR, revgeo, rfigshare, rpubchem, rsconnect, RSDA, RXKCD, rYoutheria, shinyFiles, shopifyr, smoof, stringgaussnet, switchr, switchrGist, tabplotd3, Thinknum, timeseriesdb, tm.plugin.webmining, translate, translateR, treeman, WaterML
banR, bayesplot, dbplyr, dexter, DiagrammeR, dplyr, fold, ggeffects, ggformula, googledrive, iadf, implyr, later, metaplot, mosaicCore, naniar, nofrills, nonmemica, NPMOD, photobiology, PKPDmisc, pointblank, polypoly, poppr, prisonbrief, purrr, recipes, rsample, RSDA, seplyr, sjmisc, sjPlot, sjstats, sparklyr, spdplyr, statar, stplanr, sugrrants, tatoo, taxa, tibble, tibbletime, tidygraph, tidyr, tidyselect, unjoin, valr, vdiffr
CorporaCoCo, eemR, highcharter, PATHChange, rAltmetric, RDML, rrefine, strip
HLMdiag, lmeresampler, refund, simr, varComp, vows
adapr, addinslist, apa, ari, BETS, BIGDAWG, blkbox, blogdown, bookdown, BrailleR, bsplus, caRpools, ChocoLattes, compareGroups, condformat, DataExplorer, dataMaid, FactoInvestigate, fastqcr, flexdashboard, formattable, gistr, Gmisc, GROAN, huxtable, issueReporter, Jdmbs, kableExtra, knitrBootstrap, komadown, lazyrmd, learnr, liftr, MendelianRandomization, monographaR, packagedocs, pointblank, PreKnitPostHTMLRender, prereg, prettydoc, PTXQC, radiant.data, randomForestExplainer, rchallenge, reprex, resumer, revealjs, RInno, rmdformats, rmdshower, rticles, RtutoR, sdcMicro, ShinyItemAnalysis, SpatialEpiApp, stremr, swirlify, timevis, tint, tufte, uiucthemes, wallace, xaringan
eemR, hNMF, KATforDCEMRI, lans2r, oXim, retistruct, scalpel, sisal
ACNE, aroma.affymetrix, aroma.apd, aroma.cn, aroma.core, calmate, cgdsr, NPCD, phylosim, PSCBS, R.cache, R.devices, R.filesets, R.huge, R.matlab, R.rsp, rtf, R.utils, sBIC, SEMID, sisal, tmle.npvi
corHMM, downscale, ecd, GJRM, HH, ldatuning, NetworkChange, OUwie, SNscan
apricom, bujar, cg, Daim, ecospat, glmBfp, Greg, greport, haplo.stats, hdnom, hIRT, lodGWAS, LogisticDx, mztwinreg, nlrr, nomogramEx, ordcrm, pec, plsRcox, PResiduals, riskRegression, rprev, shrink, spatialEco, Surrogate, survHE, SvyNom, TrendInTrend, VizOR
BETS, Causata, mdsr, MetaIntegrator, nowcasting, taxizedb, tcpl, TSMySQL, wordbankr
divest, melviewr, neurobase, oro.nifti, RNiftyReg
analytics, betas, covmat, groc, qqtest, robustvarComp, WGCNA
BIGL, bulletr, CerioliOutlierDetection, chemometrics, chipPCR, complmrob, covmat, cvTools, dataMaid, DetR, dfphase1, ergm, fAssets, fpc, fPortfolio, georob, GeoXp, Gmedian, groc, GSE, highfrequency, KRMM, ldstatsHD, lessR, MAINT.Data, MendelianRandomization, metRology, MKmisc, MVN, mvoutlier, pcalg, PhylogeneticEM, PlasmaMutationDetector, qGaussian, qqplotr, RcmdrPlugin.PcaRobust, roahd, robreg3S, robust, robustlmm, robustloggamma, robustvarComp, robustX, rospca, rrcov3way, sdcMicro, semiArtificial, shotGroups, sprm, StatDA, tergm, VIM
aLFQ, AutoModel, Biocomb, btergm, ck37r, classifierplots, DCD, DMwR, DRaWR, DrugClust, EFS, exprso, funModeling, gkmSVM, healthcareai, hybridEnsemble, iRafNet, lulcc, mlDNA, MLmetrics, NEArender, nproc, OmicKriging, prcbench, RFmarkerDetector, Seurat, sperrorest, VRPM
fbar, FuzzyLP, ompr.roi, ROI.models.miplib, ROI.models.netlib, ROI.plugin.alabama, ROI.plugin.clp, ROI.plugin.cplex, ROI.plugin.ecos, ROI.plugin.glpk, ROI.plugin.ipop, ROI.plugin.lpsolve, ROI.plugin.msbinlp, ROI.plugin.nloptr, ROI.plugin.optimx, ROI.plugin.quadprog, ROI.plugin.scs, ROI.plugin.symphony
ACNE, aroma.affymetrix, aroma.apd, aroma.cn, aroma.core, calmate, cgdsr, PSCBS, R.cache, R.devices, R.huge, R.matlab, R.rsp, rtf, sBIC, SEMID, tmle.npvi
addhazard, BayesCR, BivUnifBin, bvpSolve, condGEE, dMod, drLumi, fbati, geex, givitiR, HRQoL, mdpeer, mev, nettools, PROreg, RadTran, rodd, sdprisk, SmartSifter, StMoMo, tranSurv, UncertainInterval, zFactor
aoos, docstring, document, exampletestr, Rd2roxygen, redland, zoon
autoBagging, aVirtualTwins, BCA, Biocomb, biomod2, bnclassify, bst, CADStat, chemmodlab, CORElearn, CorReg, Dforest, DMwR, DMwR2, dprep, ebmc, fastAdaboost, FFTrees, fifer, gamclass, gencve, Harvest.Tree, Hmisc, HMP, hybridEnsemble, ibmdbR, imputeR, ipred, JOUSBoost, LTRCtrees, MergeGUI, mfe, mice, Modeler, mopa, NoiseFiltersR, PredPsych, PSAboot, radiant.model, RcmdrPlugin.BCA, RecordLinkage, rminer, rms, rotationForest, semtree, simputation, sperrorest, SSDM, statisticalModeling, SubgrpID, supclust, SurvRank, synthpop, vcrpart, VSURF
DStree, HMP, ibmdbR, rattle, RcmdrPlugin.BCA, regclass, semtree, yorkr
GEOmap, geophys, ProfessR, RFOC, Rquake, RSEIS, RTOMO
dbfaker, postGIStools, sejmRP, stacomiR, taxizedb, TSPostgreSQL, tweet2r
desc, excerptr, here, learnr, rmarkdown, secret, sparklyr, teachingApps
FactoInvestigate, GSE, MAINT.Data, RcmdrPlugin.PcaRobust, robCompositions, robust, rospca
autothresholdr, envirem, GSIF, nandb, plotKML
ACDm, clickstream, fPortfolio, GAS, GDINA, GofKmt, guess, gWQS, ICAOD, maxTPR, mrds, QFASA, qfasar, rmgarch, rugarch, Select, TBSSurvival, wqs
bigstatsr, dtwclust, fuser, Gmedian, kpcalg, MatrixCorrelation, miRNAss, quanteda, rARPACK, SISIR, textmineR
acc, anchoredDistr, APSIM, archivist, BatchExperiments, BatchJobs, bdlp, bikedata, BoSSA, CollapsABEL, cranlike, D3GB, diffrprojects, ecd, emuR, gcbd, healthcareai, imputeMulti, InterpretMSSpectrum, KoNLP, liteq, LowWAFOMNX, LowWAFOMSobol, maGUI, marmap, MetaIntegrator, parsemsf, pleiades, poplite, replyr, rtext, SEERaBomb, SGP, smnet, sqliter, taxizedb, taxonomizr, tcpl, tigreBrowserWriter, trackeR, TSSQLite, tweet2r, UPMASK, vmsbase
bmlm, breathteststan, brms, ctsem, DeLorean, DrBats, gastempt, hBayesDM, MCMCvis, nauf, prophet, RBesT, rstanarm, shinystan, survHE, themetagenomics, treatSens
BETS, Cite, citr, convertr, datapasta, DescToolsAddIns, devtools, DiagrammeR, document, dplyrAssist, EventStudy, getPass, ggedit, ggThemeAssist, giphyr, gitgadget, GUIProfiler, kntnr, liftr, lintr, MetaAnalyser, pipefittr, qiitr, questionr, radiant.data, RNeo4j, rsconnect, SciencesPo, sinew, spAddins, SpaDES.addins, sparklyr, summarytools, texPreview, Tmisc, zeligverse
BLCOP, haploR, ldamatch, rkafkajars, runittotestthat
bayescount, IsotopeR, metaBMA, RcmdrPlugin.RMTCJags, TreeBUGS, tRophicPosition
acc, ACNE, alphahull, aroma.apd, awsjavasdk, bedr, bigstep, BioInstaller, Causata, ChocoLattes, CollapsABEL, countyfloods, demi, downsize, dplR, drake, edgar, EEM, eiCompare, evclust, ezknitr, freesurfer, fslr, future.BatchJobs, gdalUtils, gifti, GSODR, hoardeR, joinXL, LSPFP, mailR, mcparallelDo, MPAgenomics, nandb, net.security, neurobase, officer, PhenotypeSimulator, PopGenReport, PSCBS, qrcode, R.cache, R.devices, ReporteRs, R.filesets, R.huge, R.matlab, Rnightlights, ROI.models.miplib, R.rsp, sdmpredictors, SDMTools, SEMID, SensusR, simPATHy, snplist, SpaDES.core, spm12r, stplanr, taxonomizr, TBSSurvival, vortexR
addinslist, ari, atlantistools, banxicoR, baseballDBR, BETS, BioInstaller, boxoffice, datasus, ecoseries, eechidna, epidata, fastqcr, finreportr, foghorn, gcite, gesis, gfer, googleformr, gtrendsR, icpsrdata, incadata, kableExtra, MazamaSpatialUtils, mRchmadness, nhanesA, osmdata, pewdata, postlightmercury, prisonbrief, readOffice, RNHANES, Rnightlights, RNRCS, ropercenter, rUnemploymentData, SanFranBeachWater, scholar, sejmRP, sidrar, smapr, textreadr, tidycensus, tidyquant, tidyverse, traits, tropr, waccR, webchem, wikilake, wikipediatrend, ztype
aslib, Biocomb, DecorateR, FSelector, NoiseFiltersR
bayesPop, birdring, mapr, Rnightlights, virtualspecies, wux
exprso, Frames2, mopa, RRTCS, Sofi, SurvRank
acrt, betareg, censReg, clubSandwich, clusterSEs, contrast, eventstudies, fChange, FindIt, fxregime, gcmr, glmx, glogis, gravity, Greg, highfrequency, interflex, lfe, MarkowitzR, maxLik, medflex, merDeriv, mlt, multcomp, multiwayvcov, nonnest2, nse, outreg, party, pdR, plm, quickmatch, radiant.model, rddtools, rdlocrand, REndo, sjstats, ssym, systemfit, termstrc, uwIntroStats, vcrpart, Zelig
AFM, afmToolkit, alakazam, aqp, atlantistools, backtestGraphics, bdrift, bdscale, bea.R, benchmark, BIGL, bossMaps, brainGraph, bridgesampling, cellWise, cholera, choroplethr, clhs, clifro, colorplaner, complmrob, condformat, covmat, cr17, ctmm, d3heatmap, DataExplorer, Deducer, dendroExtra, DEploid, DescribeDisplay, di, DiagrammeR, dlstats, drc, dtwSat, EasyHTMLReport, easyml, EpiBayes, evaluator, EventStudy, extracat, ez, factorMerger, FAOSTAT, fastqcr, fergm, findviews, fSRM, funModeling, GADMTools, gazepath, geneNetBP, geomerge, GERGM, ggalt, ggChernoff, ggCompNet, GGEBiplots, ggedit, ggeffects, ggforce, ggfortify, ggimage, ggiraphExtra, ggmap, ggplot2, ggpubr, ggraph, ggrepel, ggridges, ggsci, ggspatial, ggspectra, ggtern, ggthemes, gogamer, GSIF, gwdegree, heatmaply, hierarchicalSets, hrbrthemes, idefix, iDINGO, IncDTW, IPtoCountry, jcolors, ldatuning, ldhmm, leaflet, learningCurve, linear.tools, mafs, mapview, marcher, mbgraphic, meltt, metacoder, mousetrap, mplot, myTAI, ncappc, NeuralNetTools, nima, optiRum, OutbreakTools, paleobioDB, pheatmap, pinbasic, pixiedust, plotKML, plotluck, plotly, powerlmm, primerTree, prophet, qdap, qicharts, qicharts2, QRAGadget, quadrupen, quantable, RADanalysis, radiant.basics, radiant.data, radiant.multivariate, RAM, raptr, rAvis, rbokeh, rcicr, RcmdrPlugin.KMggplot2, RDS, remote, RNewsflow, rnoaa, roahd, RSDA, RSSL, SCGLR, SEERaBomb, SeqFeatR, sergeant, sharpshootR, shazam, simmer.plot, SixSigma, sjPlot, spikeSlabGAM, splashr, starma, statebins, strvalidator, superheat, survminer, svdvis, tcR, TDA, teachingApps, themetagenomics, tidyquant, toaster, UpSetR, useful, userfriendlyscience, vanddraabe, vetools, zoocat
arulesViz, asbio, caRpools, colordistance, coRanking, cricketr, diffusionMap, FactoMineR, fractal, FrF2, homals, MagneticMap, matrixLaplacian, pavo, PharmPow, phytools, pi0, RSDA, shapes, Sim.DiffProc, SOMbrero, specmine, SpectralMap, vegan3d
Actigraphy, gazepath, lefse, NORRRM, phenopix, raincpc, rainfreq, scalpel, SDMPlay, Seurat, shazam, spatialEco, sperich, SSDM, trackdem, zoon
adegenet, alakazam, aLFQ, AlignStat, AmyloGram, AnnotationBustR, apmsWAPP, caRpools, CONDOP, cooccurNet, dartR, evobiR, gkmSVM, gquad, hoardeR, MAGNAMWAR, metacoder, prozor, PTXQC, SafeQuant, shazam, signalHsmm, sivipm
arulesViz, corrgram, corrr, DeLorean, heatmaply, matie, mbgraphic, pergola, qlcVisualize
FindMinIC, HYRISK, intReg, NIPTeR, relations, Rtextrankr, scanstatistics, sdcMicro, semtree
concaveman, jpndistrict, linemap, link2GI, mapedit, mapview, MODIS, parlitools, rmapzen, rnaturalearth, RQGIS, sfdct, tidycensus, tigris
CDM, Demerelate, DHARMa, distrMod, esvis, FCGR, FrF2, gasfluxes, lokern, mcmcplots, mirt, npregfast, pcalg, pifpaf, RADanalysis, rags2ridges, random.polychor.pa, ReliabilityTheory, simsalapar, sirt, TAM, umx, xseq
adepro, cape, circlize, diffEq, dsmodels, EpiBayes, Luminescence, marmap, NPCirc, OceanView, plspm, raptr, RBPcurve, rmgarch, rWind, SSRA, vows
Anthropometry, biplotbootGUI, cncaGUI, LOST, multibiplotGUI, optiSolve, symbolicDA
BayesianNetwork, CTTShiny, dplyrAssist, ggedit, IRTShiny, lavaan.shiny, MAVIS, radiant.data, swirlify, teachingApps
adepro, Eagle, gridsampler, MAVIS, memapp, modest, RtutoR, sdcMicro, SensMixed, shinyLP, soundgen, stmgui, treespace, wallace, yuimaGUI
adapr, BayesianNetwork, bea.R, bridger2, eAnalytics, elementR, GerminaR, irtDemo, memapp, mplot, RLumShiny, RtutoR, seasonalview, simPATHy, SSDM, teachingApps, yuimaGUI
addinslist, AFM, bairt, blkbox, colourpicker, CRANsearcher, ddpcr, Eagle, eechidna, elementR, GeneralizedUmatrix, ggExtra, lightsout, memapp, npregfast, ProjectionBasedClustering, RtutoR, ShinyItemAnalysis, shinystan, SpatialEpiApp, spectrolab, wallace, wppExplorer, yuimaGUI
ArchaeoPhases, Eagle, gridsampler, lime, memapp, qqvases, shinyLP, shinystan, skpr, teachingApps, wallace, wppExplorer
AEDForecasting, baitmet, biosignalEMG, breathtestcore, CATkit, chipPCR, dpcR, erah, erp.easy, IRISMustangMetrics, IRISSeismic, perARMA, psd, spant, sysid, TLBC, tswge, tuneR, warbleR
ggeffects, qualtRics, sjmisc, sjPlot, sjstats, tadaatoolbox
esc, ggeffects, sjPlot, sjstats, tadaatoolbox
chinese.misc, fPortfolio, gofastr, HDCI, IMIFA, ldatuning, lpmodeler, LPR, movMF, parma, polmineR, rDEA, relations, RNewsflow, ROI, ROI.plugin.clp, ROI.plugin.cplex, ROI.plugin.ecos, ROI.plugin.ipop, ROI.plugin.msbinlp, ROI.plugin.quadprog, ROI.plugin.scs, ROI.plugin.symphony, skmeans, stm, textcat, textmining, textshape, tm, tm.plugin.dc, toaster, topicmodels, wordcloud, Xplortext
caRpools, DAMisc, DepthProc, funcy, mem, MuViCP, otinference, rase, SDD, spef
ALDqr, bssn, Compositional, fAssets, fMultivar, mateable, mvdalab, parfm, Rgbp, SGP, ssmn, VarReg, VARtests, Wrapped
Blaunet, btergm, CINNA, compete, enaR, ftsspec, geomnet, ggCompNet, ggnetwork, gwdegree, keyplayer, latentnet, netdiffuseR, OutbreakTools, qgraph, sfc, statnetWeb, strategicplayers, tnam, VBLPCM
AdhereR, ck37r, dclone, dynOmics, fence, Haplin, LEGIT, mcGlobaloptim, npphen, snowFT
bibliometrix, DeducerText, gofastr, goldi, inpdfr, lexRankr, NLPutils, ptstem, quanteda, SentimentAnalysis, slowraker, stmCorrViz, textmineR, textmining, textstem, tokenizers
BaSTA, BayesS5, fence, georob, meteo, PSTR, quantspec, rags2ridges, XMRF
chemometrics, earlywarnings, popsom, restlos, som.nn, wTO
covatest, FRK, geoSpectral, gstat, meteo, plotKML, RObsDat, STMedianPolish, trajectories, tweet2r, VTrack
bamlss, CARBayes, CARBayesST, CollocInfer, earlywarnings, growfunctions, madrat, mclcar, mopa, mvMORPH, nat.nblast, OptimaRegion, SpATS, splm
baseline, cobs, DDD, DESP, expoRkit, gmum.r, hts, netdiffuseR, nmfgpu4R, pawacc, PResiduals, smoothAPC, stR, SwarmSVM
ads, alphahull, BAT, Biolinv, colordistance, ConR, dpcR, ecospat, ETAS, gridsample, hht, highriskzone, intamapInteractive, lgcp, lqr, MetaLandSim, mopa, osmplotr, palm, polyCub, qlcVisualize, radiomics, replicatedpp2w, RImageJROI, rLiDAR, rust, smacpod, spatialEco, spatialkernel, spatsurv, sppmix, surveillance, swfscMisc, trip, tweet2r, windfarmGA
ConR, dbmss, gridsample, lgcp, SIBER, sparr, spatstat, spatstat.local
adegenet, adespatial, agricolae, CARBayes, CARBayesST, ClustGeo, DNLC, GeNetIt, geomerge, HSAR, INLABMA, LabourMarketAreas, mclcar, meteoland, OasisR, pgirmess, redist, saeRobust, saeSim, smerc, spacom, spatialEco, SpatialEpi, SpatialEpiApp, sphet, stampr, tmap, tmaptools, zooaRchGUI
bigstep, btergm, GEint, hit, LogisticDx, ltmle, MXM, stremr, tmlenet
alphahull, DSsim, ExceedanceTools, GEOmap, geoR, GeoXp, kineticF, mopa, pgirmess, phonR, PrevMap, RCALI, RFOC, RTOMO, seg, simLife, SpecHelpers, spind, tspmeta, tweet2r, zooaRchGUI
ggpmisc, ifultools, photobiology, sapa, wmtsa
bdvis, BETS, fdq, idem, ITGM, kangar00, phalen, polyPK, RcextTools, RSDA, stacomiR
copula, fBasics, GEVStableGarch, MARX, MittagLeffleR
distrDoc, distrEllipse, distrEx, distrMod, distrRmetrics, distrSim, distrTeach, distrTEst, RandVar, RobAStBase, ROptEst
BayesianGLasso, Bclim, bgsmtr, boxcoxmix, cda, ChainLadder, cplm, dsm, equateIRT, flexCWM, frailtypack, glmBfp, hoa, joineR, LogisticDx, mexhaz, mlogit, multimark, mvabund, mvQuad, NetRep, npmlreg, PanelCount, pglm, planar, plink, PredPsych, R2STATS, SNSequate, x.ent
Blaunet, btergm, ergm.ego, ndtv, networkDynamic, statnet, tsna
bcRep, bdlp, bibliometrix, deductive, diffrprojects, fastLink, fcuk, fuzzyjoin, GetLattesData, lime, lingtypology, lintr, PGRdup, qdap, SentimentAnalysis, sjmisc, tcR, TSTr
alakazam, assertive.strings, auk, batchtools, bea.R, BioInstaller, censys, chinese.misc, CITAN, cleanNLP, congressbr, countyweather, dataCompareR, datasus, Diderot, dplR, drake, easyformatr, Ecfun, epidata, eurostat, evaluator, eyelinker, farff, fastLink, fiery, flippant, gdns, GetTDData, gfer, ggfittext, haploReconstruct, hrbrthemes, hyphenatr, ie2misc, imaginator, inpdfr, jpndistrict, lime, memapp, mlr, mnis, mscstexta4r, neuropsychology, OpenML, optigrab, parlitools, pathological, PGRdup, placement, plumber, poio, qdapRegex, qlcData, quanteda, randstr, rangeBuilder, rattle, RcmdrPlugin.temis, re2r, readtext, reqres, RndTexExams, routr, roxygen2, RPresto, rprime, rprintf, rslp, Rtextrankr, sasMap, searchable, sejmRP, sentimentr, shazam, snakecase, SpaDES.addins, SpaDES.core, splashr, stplanr, stringr, syllable, tangram, tatoo, TeXCheckR, textclean, textshape, tidyr, timetk, tokenizers, VarfromPDB, wakefield, wand, wikilake, wildcard, xgboost
bfast, demography, phenopix, TSS.RESTREND, vcrpart
DAISIE, DDD, diskImageR, diversitree, geiger, pomp, SADISA
brr, Haplin, NSM3, PHENIX, userfriendlyscience
BIFIEsurvey, capm, causaldrf, convey, dgo, EffectLiteR, effects, GB2, GJRM, httk, ICS, ICtest, poliscidata, rareGE, RNHANES, sirt, srvyr, StroupGLMM, SvyNom, tab, tableone, Zelig
addhazard, aftgee, AICcmodavg, AIM, bamlss, beanz, BeSS, BGPhazard, binequality, Biograph, biospear, BSGW, c060, cancerGI, casebase, censCov, CFC, cg, chngpt, cmprskQR, compareGroups, concreg, condSURV, controlTest, Counterfactual, coxphf, coxphMIC, CP, CPsurv, Cyclops, DelayedEffect.Design, DPpackage, DStree, DTR, DWreg, EGRET, EL2Surv, ELMSurv, EMA, Epi, epoc, factorMerger, FHtest, fmrs, fragilityindex, gamlss, ggRandomForests, GJRM, glmBfp, greport, gyriq, hdnom, hds, hoa, idem, ilc, intercure, ipred, ipw, kmi, landest, landpred, lava, lodGWAS, LTRCtrees, MAGNAMWAR, mboost, Mediana, mets, mice, miCoPTCM, MIICD, mixPHM, mixtools, mlr, mlt, mombf, momentuHMM, moonBook, mpr, msaenet, msm, msmtools, muhaz, MXM, My.stepwise, nima, nparsurv, nsROC, numKM, pact, party, partykit, pec, permDep, personalized, plsRcox, popEpi, powerSurvEpi, prioritylasso, prodlim, pseval, PTE, PWEALL, quickReg, rankhazard, RcmdrPlugin.KMggplot2, rcure, ReIns, reportRx, reReg, riskRegression, RItools, rld, robustloggamma, rolr, rpsftm, rpst, Rsurrogate, RVFam, SEERaBomb, sensitivityPStrat, shrink, SIDES, simexaft, SimHaz, simPH, SIS, skpr, smcfcs, SMPracticals, spatsurv, spBayesSurv, spef, SSRMST, StatCharrms, stdReg, stpm, strataG, Surrogate, surrosurv, surv2sampleComp, survAWKMT2, SurvCorr, SurvDisc, survidm, survivALL, survminer, survutils, SvyNom, tab, TBSSurvival, TraMineRextras, tranSurv, TreatmentSelection, TwoPhaseInd, TwoStepCLogit, uwIntroStats, valorate, VarReg, vennLasso, VRPM, WCE, WGCNA, WLreg, WRTDStidal, xpose4
svHttp, svIDE, svSocket, svTools, svWidgets
cancerGI, ChainLadder, erer, micEconAids, micEconCES, micEconSNQP, sampleSelection
bdvis, brranching, camtrapR, metacoder, myTAI, originr, RNeXML, rusda, taxlist, TR8, traits
biplotbootGUI, cncaGUI, dynBiplotGUI, elementR, fSRM, HierO, KarsTS, LSPFP, multibiplotGUI, Rcmdr, RcmdrPlugin.FuzzyClust, RcmdrPlugin.KMggplot2, RcmdrPlugin.sos, RcmdrPlugin.temis, rite, rSPACE, stylo, TTAinterfaceTrendAnalysis, TTCA, uHMM, zooaRchGUI
brr, Ecfun, geospt, palaeoSig, PowerTOST, proportion, RBPcurve, TipDatingBeast
DAISIE, hds, spatstat, spatstat.local, tensorBF, tensorBSS
arsenal, arulesCBA, bedr, CARBayesST, DamiaNN, DBItest, drake, eggCounts, eventstudies, EventStudy, googleAuthR, lintr, mockery, ncappc, Phxnlme, powerlmm, raptr, rDotNet, rpostgisLT, rusda, SCORPIUS, SixSigma, stubthat, survivALL, swirl, TCIApathfinder, texmexseq, tidyRSS, toOrdinal, vdiffr, vqtl, zoon
dse, EvalEst, sysid, TScompare, TSdbi, tsfa, TSfame, TSmisc, TSMySQL, TSodbc, TSPostgreSQL, TSsdmx, TSsql, TSSQLite
TSfame, TSmisc, TSodbc, TSPostgreSQL, TSsdmx, TSsql, TSSQLite
abjutils, afmToolkit, alfred, alphavantager, anomalyDetection, antaresViz, atlantistools, babynames, banR, bikedata, billboard, biomartr, blkbox, blob, blockTools, blscrapeR, bold, breathtestcore, breathteststan, bsam, caffsim, ccafs, cdata, cellranger, cepR, charlatan, childsds, ciTools, clustermq, condformat, congressbr, corrr, countyweather, cpr, crplyr, dat, datadogr, dataonderivatives, datastepr, dbplyr, descriptr, DiagrammeR, docxtractr, dplyr, easyformatr, ecoseries, edeaR, enigma, esc, eurostat, evaluator, fastqcr, fbar, fcuk, feather, filesstrings, flextable, fmbasics, foghorn, forcats, frailtyEM, ftDK, gastempt, gdns, getCRUCLdata, getlandsat, ggalt, ggconf, ggeffects, ggenealogy, ggformula, ggfortify, ggguitar, ggimage, ggplot2, ggpmisc, gibble, giphyr, gitlabr, googledrive, hansard, haploR, haven, hddtools, heemod, highcharter, HURDAT, huxtable, hypoparsr, iadf, inferr, influxdbr, isdparser, jaod, jpmesh, jpndistrict, kntnr, KraljicMatrix, lifelogr, mnis, modelr, modeval, monkeylearn, mregions, mrgsolve, msgtools, myTAI, nandb, naniar, natserv, nneo, nycflights13, oai, observer, officer, olsrr, openadds, pangaear, parlitools, perccalc, photobiology, photobiologyInOut, phylopath, pkggraph, PKPDmisc, plotly, pointblank, poio, polypoly, postlightmercury, prcr, prisonbrief, PSTR, psychmeta, purrr, radiant.data, randNames, rbcb, rbgm, rbhl, rcv, rdefra, rdiversity, rdpla, readr, readtext, readxl, recipes, REDCapR, refimpact, rematch2, repurrrsive, rerddap, reutils, rgbif, rgho, riem, rif, Rilostat, rio, ritis, rmapzen, rnoaa, rodham, rorcid, rsample, rtide, rtimes, rtimicropem, SanFranBeachWater, scanstatistics, sfdct, sjlabelled, sjmisc, sjPlot, sjstats, solrium, spbabel, spdplyr, spocc, srvyr, statsDK, survminer, sweep, tabularaster, taxa, taxize, tetraclasse, tfruns, tibbletime, tidygraph, tidyquant, tidyr, tidyRSS, tidyverse, timetk, Tmisc, unjoin, unpivotr, valr, waccR, wand, wikitaxa, worrms, zeligverse, zFactor
dplyrAssist, learningCurve, mdsr, perccalc, statsDK
bioimagetools, gitter, multipanelfigure, OpenImageR, SchemaOnRead, StereoMorph, Thermimage
forecast, GEVStableGarch, highfrequency, iClick, joinXL, mafs, QRM, recipes, semiArtificial, sugrrants, valuer
BLCOP, FatTailsR, GEVStableGarch, iClick, joinXL, tframePlus, tidyquant
ade4TkGUI, biplotbootGUI, cncaGUI, dynBiplotGUI, FIACH, idendr0, Interatrix, InterfaceqPCR, KarsTS, MareyMap, multibiplotGUI, RcmdrPlugin.FuzzyClust, RcmdrPlugin.PcaRobust, relMix, rriskDistributions, uHMM, zooaRchGUI
chinese.misc, CSeqpat, edgar, fulltext, gcite, genderizeR, gofastr, goldi, inpdfr, lexRankr, neuropsychology, ngramrr, polmineR, PubMedWordcloud, qdap, rClinicalCodes, RKEA, Robocoap, RTextTools, scientoText, SentimentAnalysis, SocialMediaLab, stmCorrViz, TELP, textmineR, textreg, tm.plugin.alceste, tm.plugin.europresse, tm.plugin.factiva, tm.plugin.lexisnexis, tm.plugin.mail, tm.plugin.webmining, topicmodels, Xplortext
ARCensReg, BayesianTools, bkmr, carx, CensSpatial, DPBBM, ei, hmi, psychmeta
assignPOP, chemmodlab, mopa, nproc, RTextTools
binsmooth, episensr, HYRISK, lessR, OpasnetUtils, sfc, SimMultiCorrData
BayesCR, CARBayesST, deBInfer, EnviroPRA, ssmn, StatRank
ashr, BANFF, bkmr, BNPMIXcluster, CARBayes, CARBayesST, clustMD, copulaedas, Datasmith, EGRET, FLightR, gemtc, gmnl, hierarchicalDS, httk, marked, MBSGS, parma, PrevMap, r4ss, randstr, rDEA, Rsolnp, SparseFactorAnalysis, stocc, tglm, wiqid
BayesSpec, bgeva, ergm, GJRM, SemiParSampleSel
AID, conting, CryptRndTest, decomposedPSF, erer, fDMA, forecast, KarsTS, lfl, mafs, MARX, msltrend, partialAR, PCA4TS, PortRisk, SDD, tidyquant, TSCS, tsDyn, TSmisc
colorpatch, extracat, jocre, nlnet, pencopulaCond, SCORPIUS, seriation, vines
AcousticNDLCodeR, ari, aws.polly, seewave, soundecology, soundgen
ei, eiCompare, misclassGLM, NHMSAR, optimx, ordinal, vcrpart
analytics, apt, autovarCore, BETS, CommonTrend, erer, partialAR, termstrc, tsDyn
crul, europepmc, gutenbergr, HIBPwned, placement, rdomains, reqres, webmockr
AzureML, dataone, datapack, EML, emuR, fiery, ggiraph, googledrive, ids, officer, pinnacle.API, RMixpanel, RNeXML, routr, rpg, text2vec, tigris, uptasticsearch
ajv, cdcfluview, colormap, concaveman, daff, dagitty, DiagrammeRsvg, DOT, geojsonio, geojsonlint, gfer, js, jsonld, jsonvalidate, lawn, minimist, randomcoloR, rchess, rjade, rmapshaper, suncalc, uaparserjs
arulesViz, DoE.base, eeptools, gpairs, HH, jmv, pcalg, STEPCAM, tadaatoolbox, VIM
adegenet, BAT, bcRep, bingat, biogeo, cati, cems, dartR, Datasmith, Demerelate, DiversityOccupancy, dnc, ecospat, entropart, evolqg, forams, gdm, GERGM, goeveg, HMP, lefse, mcMST, MEclustnet, memgene, netassoc, netcom, nodiv, paco, PCPS, pez, PopGenReport, poppr, preText, ProjectionBasedClustering, rich, rioja, RVAideMemoire, shapeR, sharpshootR, SigTree, soundecology, spmoran, tnam, tspmeta, vcfR, zetadiv, zooaRchGUI
bedr, caRpools, PATHChange, RAM, stringgaussnet, TTCA, veccompare, vennLasso, vmsbase
AICcmodavg, BioPET, casebase, cg, CompDist, Countr, DAMisc, DPBBM, Dpit, EffectStars2, ExomeDepth, fakeR, GJRM, gmediation, HiDimMaxStable, ldstatsHD, list, lllcrc, misreport, moezipfR, PAFit, ph2bye, powdist, poweRlaw, sads, sampleSelection, SemiParSampleSel, Seurat, SimMultiCorrData, smcfcs, snowboot, SparseFactorAnalysis, sparsereg, staTools, Wrapped, Zelig, ZeligChoice
CDVineCopulaConditional, gamCopula, GJRM, gofCopula, kdevine, pacotest
BiBitR, BMhyb, CINNA, clustMD, dendextend, DiagrammeR, eemR, eesim, evaluator, ggraph, Hmisc, IMIFA, Infusion, leaflet, mptools, nandb, naniar, noaastormevents, pdp, RcmdrPlugin.BiclustGUI, rwty, SAGA, shinyHeatmaply, SIBER, simmr, survivALL, tabularaster, tadaatoolbox, VRPM
autoimage, fdasrvf, IsoriX, mapview, plotly, rasterVis, scales, vcfR
ahnr, arulesViz, DiagrammeR, drake, epicontacts, iDINGO, MXM, petrinetR, RcextTools, ShinyTester, teachingApps, vennLasso, wTO
EFDR, iWISA, NSM3, SpatialVx, spind, tswge
DDHFm, EbayesThresh, funcy, grove, hwwntest, shapeR, WiSEBoot
antaresViz, ari, BETS, mapview, vegalite
cbsodataR, charlatan, d3Network, dendextend, devtools, ecoengine, fauxpas, flowr, fulltext, packagedocs, represtools, reprex, request, rgbif, rplos, rslurm, spocc, spup, swirlify
batchtools, caret, covr, cyclocomp, DBItest, devtools, drake, flippant, gdtools, learnr, prettycode, rcmdcheck, sessioninfo, sparklyr
edgar, gcite, inpdfr, Mobilize, PubMedWordcloud, qdap, quanteda, radiant.multivariate, rbefdata, RNewsflow, smacof, SOMbrero, statquotes, TELP, textmining, toaster
autoBagging, blkbox, healthcareai, iqspr, rminer, SSL
Dominance, googlePublicData, imageData, SEERaBomb, table1xls, tidyquant
caRpools, DataClean, G2Sd, InterfaceqPCR, lar, ODMconverter, psData, qdap, rpcdsearch, rrepast, survHE
abbyyR, archiDART, aRxiv, aws.alexa, baitmet, belex, BIGDAWG, biomartr, BoolNet, BrailleR, CADStat, causaleffect, Causata, cdlTools, chillR, ChocoLattes, cleanEHR, clifro, CodeDepends, colourlovers, comato, coreNLP, CorrectOverloadedPeaks, creditr, cricketr, DataClean, datamart, dataone, datapack, dbhydroR, DDIwR, dplR, dvn, Ecfun, edeaR, edgar, erah, feedeR, geoknife, geometa, geosapi, GetLattesData, GetTDData, ggiraphExtra, gmapsdistance, Gmisc, googlePublicData, graphicsQC, gridSVG, haploR, hddtools, HierO, hive, HMDHFDplus, hoardeR, htmltab, htmltidy, icesVocab, IncucyteDRC, inegiR, IRISMustangMetrics, IRISSeismic, letsR, Luminescence, MALDIquantForeign, meteoForecast, miniCRAN, mldr, mlxR, MODIS, MODIStsp, mtconnectR, MTurkR, MTurkRGUI, myepisodes, net.security, noaastormevents, OData, ODMconverter, OpenML, OpenRepGrid, optiRum, PBSmodelling, pdfetch, plotKML, PreKnitPostHTMLRender, primerTree, ProTrackR, pubmed.mineR, PubMedWordcloud, pvsR, qat, qdap, qdapTools, quanteda, rattle, rAvis, rbefdata, rClinicalCodes, RCriteo, rdomains, readMLData, readMzXmlData, readtext, rentrez, Reol, restfulr, reutils, RevEcoR, rfigshare, rfml, RForcecom, RKEEL, rLDCP, rlist, RNeXML, rnoaa, rNOMADS, rpubchem, RQGIS, RSDA, rsdmx, RSelenium, rsml, rsMove, rsnps, rsolr, RStoolbox, rtematres, rusda, Ryacas, sejmRP, semPlot, SentimentAnalysis, SetRank, soilDB, solr, sophisthse, spartan, stressr, svIDE, SWMPr, TCGA2STAT, TFX, timetree, tmaptools, tmod, tm.plugin.europresse, tm.plugin.factiva, tm.plugin.lexisnexis, tm.plugin.webmining, TPEA, TR8, trackeR, treebase, ukbtools, ukgasapi, userfriendlyscience, ustyc, vegdata, vkR, WaterML, WikiSocio, WMCapacity, xesreadR, ZillowR
addinslist, alfred, algorithmia, ari, atlantistools, aws.iam, aws.s3, aws.sns, aws.sqs, banxicoR, baseballDBR, BETS, bikedata, binman, biolink, bold, boxoffice, bulletr, camsRad, ccafs, cdcfluview, cifti, congressbr, crminer, cycleRtools, dataRetrieval, datasus, dataverse, discgolf, docxtractr, dwapi, ecb, ecoseries, edeaR, edgarWebR, eechidna, EML, enigma, epidata, europepmc, fastqcr, finch, finreportr, foghorn, fulltext, gcite, gesis, getlandsat, gfer, ggiraph, gifti, glassdoor, googleformr, googlesheets, htmltidy, icesSAG, incadata, ionicons, itunesr, kableExtra, kokudosuuchi, lumendb, MazamaSpatialUtils, midas, move, mRchmadness, mregions, mschart, natserv, neotoma, neurohcp, nhanesA, nonmemica, oai, OAIHarvester, OECD, officer, openadds, originr, osmdata, pangaear, pdfetch, postlightmercury, prisonbrief, rbcb, rbhl, Rcrawler, rcrossref, rdefra, RDML, rdnb, rdryad, readODS, readOffice, refimpact, RefManageR, ReporteRs, reqres, rerddap, rgbif, Rilostat, RNHANES, Rnightlights, rnoaa, rNOMADS, RNRCS, rnrfa, ropercenter, roxygen2, rversions, rvg, SanFranBeachWater, SchemaOnRead, scholar, sejmRP, sidrar, slickR, smapr, solrium, sparklyr, spelling, splashr, sss, taxize, texPreview, textreadr, tidycensus, tidyquant, tidyRSS, tidyverse, traits, tropr, unpivotr, vdiffr, W3CMarkupValidator, waccR, waterData, webchem, wikilake, wikipediatrend, wikitaxa, xesreadR
AICcmodavg, BEACH, bea.R, BEQI2, BioGeoBEARS, BrailleR, canprot, clickR, condir, confidence, Correlplot, CovSelHigh, Crossover, CUFF, DAMisc, descr, dtwSat, dynr, EasyHTMLReport, EMA, fifer, gsrsb, hierarchicalDS, HRM, huxtable, inTrees, IsoGene, kutils, lfe, lsmeans, midrangeMCP, miscset, MplusAutomation, MSBVAR, ncappc, NNTbiomarker, OpasnetUtils, pipe.design, pkgmaker, poliscidata, PopGenReport, qmethod, RecordLinkage, reportRx, reproducer, RItools, robustlmm, RSDA, SciencesPo, sdcMicro, seasonalview, SensMixed, shiny, shinyHeatmaply, ShinyItemAnalysis, shinystan, SIMMS, SixSigma, sparkTable, spduration, StableEstim, stacomiR, stacomirtools, StatDA, Stickbreaker, summarytools, survMisc, tab, userfriendlyscience, x.ent
AlphaVantageClient, backtestGraphics, carx, CityWaterBalance, covmat, creditr, DClusterm, DMwR, DMwR2, dygraphs, dynatopmodel, ecd, fDMA, GAS, gdpc, geoSpectral, ggpmisc, highcharter, hydroGOF, influxdbr, kehra, Knoema, ldhmm, machina, MODIStsp, moveVis, nowcasting, PANICr, pdfetch, PoloniexR, PWFSLSmoke, qrmdata, qrmtools, rbcb, rmgarch, rnrfa, RObsDat, rugarch, seasonalview, shinystan, spacetime, SpatialEpiApp, Strategy, stressr, swmmr, tawny, tawny.types, tbl2xts, tidyquant, timeseriesdb, timetk, TSdist, tsensembler, TTR, vetools
ahp, ajv, ambhasGW, analogsea, aslib, automagic, bea.R, bedr, binman, blogdown, bookdown, bookdownplus, Causata, cbsodataR, citr, cleanEHR, config, configr, csvy, datarobot, ecd, gitlabr, htmlwidgets, knitr, liftr, nat, packagedocs, PTXQC, qlcData, qualtRics, quanteda, radiant.model, rAmCharts, rapport, restfulr, rfigshare, rlist, rmarkdown, rmcfs, rsconnect, RSQLServer, rticles, sinew, swirl, swirlify, teachingApps, tensorflow, tfruns, validate, wdman, yorkr
acc, ACDm, AcousticNDLCodeR, acss, BETS, bfast, BigVAR, bulletr, carx, CausalImpact, changepoint.np, CityWaterBalance, covmat, creditr, DBEST, DepthProc, diskImageR, DMwR, DMwR2, dygraphs, dynatopmodel, ecd, ecoseries, elementR, Epi, eyetrackingR, FDboost, fDMA, forecast, forecastHybrid, GAS, gazepath, gdpc, genotypeR, ggpmisc, grattan, GSSE, gstat, gtrendsR, gunsales, haploReconstruct, hddtools, highcharter, hydroPSO, hyfo, iemisc, iki.dataclim, imputeTestbench, inegiR, influxdbr, KarsTS, kehra, Knoema, ldhmm, lfl, lfstat, LICORS, Luminescence, mafs, manifestoR, marcher, metacoder, mlogit, mptools, MSGARCH, msltrend, nanotime, nowcasting, nparACT, obAnalytics, partialAR, partialCI, party, pdfetch, PerformanceAnalytics, phenopix, plm, plotKML, PoloniexR, PortfolioEffectHFT, PortRisk, preprocomb, psd, PWFSLSmoke, qrmtools, Quandl, quantspec, rAmCharts, rasterVis, RmarineHeatWaves, rmgarch, RQuantLib, RTransProb, rugarch, sandwich, seasonalview, sfc, sirad, smooth, snht, sophisthse, soundgen, spacetime, statcomp, STI, STMedianPolish, Strategy, stremr, survMisc, sysid, syuzhet, tableone, tawny, tawny.types, tbl2xts, TED, termstrc, TeXCheckR, tidyquant, tigerhitteR, timeseriesdb, timetk, translateSPSS2R, trib, tripEstimation, TSdist, tsensembler, tseries, TSmisc, TSsql, TTAinterfaceTrendAnalysis, TTR, vcrpart, Wats, worldmet, wql
ACEt, anytime, beanz, BEDMatrix, bigalgebra, biganalytics, bigFastlm, bigKRLS, biglasso, bigmemory, bigstatsr, bigtabulate, bikedata, bmlm, BMRV, Boom, BoomSpikeSlab, breathteststan, bssm, bsts, catSurv, Cyclops, datastructures, ddalpha, DDRTree, DescTools, dfcomb, dfmta, dfpk, dplyr, dtwclust, dynsurv, eggCounts, EPGLM, FeatureHashing, FSelectorRcpp, fts, FunChisq, gastempt, GBJ, GERGM, GiRaF, glmmsr, gmum.r, gpuR, hashmap, idem, iptools, jqr, LANDD, later, lclGWAS, lsgl, lvec, MADPop, MBA, MEGENA, Meiosis, MixedDataImpute, mixedMem, mrgsolve, msgl, MultiBD, mvnfast, nabor, nandb, NetRep, odbc, odeintr, oem, OpenMx, pcalg, phonics, PKPDmisc, PReMiuM, purrrlyr, raptr, RBesT, Rblpapi, RcppBDT, RcppBlaze, RcppMLPACK, RcppMsgPack, RcppParallel, RcppQuantuccia, RcppRedis, RcppShark, RcppStreams, readr, rootWishart, RSQLite, rstan, rstanarm, rvinecopulib, rxylib, sgd, sglOptim, simmer, SSN, supc, survHE, svglite, synchronicity, TDA, textreuse, textTinyR, tm, TransferEntropy, treatSens, valr, walker, wicket, xml2
bigalgebra, biganalytics, bigFastlm, bigKRLS, biglasso, bigtabulate, dtwclust, oem, sgd
blkergm, ergm.count, ergm.graphlets, ergm.rank, ergm.userterms, tergm
cplm, geostatsp, irlba, PRIMME, Rmosek, TMB
acrt, ADMMnet, APML0, BacArena, BayesFactor, beanz, BeSS, bigFastlm, BigVAR, blackbox, bmlm, breathteststan, btf, clere, CorReg, covafillr, Coxnet, cpgen, Cyclops, DDRTree, DetMCD, DetR, dfpk, DiffNet, diffusr, discretecdAlgorithm, Eagle, eggCounts, FastGP, FastHCS, fastLink, FastPCS, FastRCS, fdapace, fdaPDE, flars, Funclustering, fuser, gastempt, gaston, glmmsr, glmmTMB, gpuR, gRain, graphkernels, gRbase, hts, ICAOD, icenReg, idem, interp, iprior, ISOpureR, JSM, JumpTest, kernDeepStackNet, kmcudaR, lime, lme4, MADPop, MAINT.Data, MCMCprecision, MediaK, meshsimp, microclass, MPTinR, mrfDepth, nabor, oapackage, oem, OpenMx, perccal, plac, PReMiuM, ProbitSpatial, ranger, Rankcluster, raptr, RBesT, Rclusterpp, RcppNumerical, rEDM, rIsing, RNiftyReg, RobustGaSP, robustlmm, rootWishart, rpf, RSNPset, RSpectra, rstan, rstanarm, Rvcg, rvinecopulib, saturnin, Seurat, SmartSVA, spaMM, sparseHessianFD, sparseLTSEigen, sptemExp, SuperGauss, survHE, TDA, TMB, tmg, treatSens, trustOptim, vennLasso, walker, walkr
catSurv, coga, flan, mixlink, mvabund, RcppZiggurat, RGraphM
catSurv, Cyclops, dbmss, FLSSS, gaston, GERGM, lamW, markovchain, microclass, milr, MultiBD, parallelDist, patternplot, qualpalr, quanteda, re2r, roll, rPref, skm, SpatMCA, SpatPCA, StMoSim, text2vec
benchr, CFC, cpgen, dfcomb, dfmta, GCPM, JAGUAR, largeVis, lidR, lsgl, matchingMarkets, MCMCprecision, msgl, NNLM, recosystem, rFTRLProximal, Rlda, rvinecopulib, Seurat, sglOptim, textmineR, textreuse
beanz, bmlm, breathteststan, dfpk, eggCounts, gastempt, idem, MADPop, RBesT, rstanarm, survHE, treatSens, walker
beanz, bmlm, breathteststan, dfpk, eggCounts, gastempt, idem, MADPop, OpenMx, RBesT, rstan, rstanarm, survHE, treatSens, walker
Anthropometry, autoimage, cpca, DGCA, drake, forestplot, gapfill, kyotil, multivator, nimble, paleomorph, plyr, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, tableplot
fitdistrplus, flexmix, GeneralizedHyperbolic, HyperbolicDist, IPSUR, PhaseType, raw
ChemometricsWithR, deepboost, fscaret, mlr, pmml, rattle
biomod2, explor, factoextra, funrar, gSeg, Guerry, GUniFrac, MiSPU, polysat, RcmdrPlugin.pointG, VARSEDIG
EcoGenetics, HWxtest, memgene, polysat, vcfR
m2b, move, SiMRiv, spacetime, trajectories, trip
agridat, censReg, clubSandwich, geex, glmx, gmnl, LinRegInteractive, lmtest, micEconCES, mlogit, mlt.docreg, outreg, partykit, plm, REEMtree, sandwich, sjstats, vcdExtra, wooldridge
agridat, paleofire, RGraphics, Sleuth2, Sleuth3
AMModels, bbmle, GSIF, PSIMEX, RSA, sjPlot
adegenet, asbio, autoimage, bamlss, BayesX, BiodiversityR, broom, DiceEval, dynaTree, EDR, elasticIsing, erpR, evd, fBasics, fdasrvf, fMultivar, fractal, gam, kobe, laGP, locfit, mlrMBO, oce, ParamHelpers, plgp, portes, pre, quantreg, R2BayesX, rerddap, rgr, rpanel, sm, VdgRsm, vegdata, XGR
alphashape3d, ConR, directlabels, hypervolume, rollply
CerioliOutlierDetection, fastR, fastR2, HSAUR2, HSAUR3
ChemoSpec, extracat, hamlet, kselection, pmml, rattle, REPPlab, supc
cem, miceadds, mitml, MKmisc, semTools, simsem
EFDR, heplots, MittagLeffleR, MSG, pitchRx, plotKML, RGraphics, surveillance, transport
ade4, adespatial, ALA4R, aphid, aqp, asnipe, brms, data.tree, dcGOR, dendextend, ecolottery, enveomics.R, FinePop, GLSME, hierfstat, HSAUR, HSAUR2, HSAUR3, igraph, MVA, netdiffuseR, ouch, paco, phylogram, phylotate, polysat, rncl, rphast, sand, scrm, speciesgeocodeR, structSSI, subniche, symmoments, tidygraph, vhica
fdapace, IPSUR, Rcmdr, RcmdrPlugin.EZR, UsingR
BayesFactor, bayesplot, brms, fscaret, medflex, optmatch, rstanarm, sjPlot, sjstats, sqlscore, subsemble, SuperLearner
nutshell, nutshell.audioscrobbler, pmml, rattle, rfml
base64url, dagitty, exams, matrixStats, plumber, rAmCharts, repijson, R.rsp
bssm, CopulaDTA, greta, rstan, rstantools
broom, copula, glmmTMB, primer, R2admb, SEERaBomb
datarobot, deBInfer, SPEDInstabR, vipor, WRS2
agridat, AICcmodavg, broom, mi, rstanarm
broom, dynamichazard, ff, ffbase, leaps, optmatch
bigstatsr, bio3d, filematrix, matpow, mlDNA, nat.nblast, NetRep, NMF, PopGenome, rsgcc, sgd, SuperLearner
ctmm, dataCompareR, data.table, dplyr, rio, scales
dcemriS4, devtools, GGIR, hashFunction, rattle, XML
BNDataGenerator, BTR, CompareCausalNetworks, ParallelPC, rbmn, sparsebnUtils
abd, AER, aod, asbio, bayesboot, broom, CaDENCE, car, CARBayes, ChemometricsWithR, cond, crossReg, DAAG, doRedis, EffectsRelBaseline, ElemStatLearn, emplik, EnvStats, GEVcdn, gMCP, Greg, GSIF, gsubfn, harvestr, hoa, HSAUR, HSAUR2, HSAUR3, interactionTest, investr, IPSUR, ipw, jaatha, LambertW, lme4, logmult, marg, matrixpls, meboot, metafor, mirt, mistat, nlreg, npsm, optmatch, proftools, ptest, R2HTML, Rcmdr, RcmdrMisc, riskRegression, rms, robustbase, scdhlm, semGOF, semPLS, semTools, simTool, Wats
caret, fastR, fastR2, gap, glmmsr, ordBTL
arsenal, autoimage, crawl, eechidna, fivethirtyeight, GGally, ggsn, grattan, groupdata2, huxtable, lspline, lucid, macleish, plotly, spbabel, timetk
bcrm, BTSPAS, dclone, hbdct, MethComp, R2WinBUGS
fscaret, MLPUGS, mlr, pdp, plotmo, utiml
archdata, extracat, factoextra, PBImisc, quanteda
aroma.core, ARTool, corclass, corrplot, dplR, eurostat, ggmcmc, hamlet, IsoriX, metaviz, patternplot, plotly, R2SWF, R.devices, repr, Rilostat, shiny, trelliscope
apt, gWidgets2RGtk2, mlDNA, ProgGUIinR, retistruct, Rz
abd, agridat, betareg, bglm, BIFIEsurvey, BiodiversityR, bnormnlr, clubSandwich, codingMatrices, compareGroups, coreSim, ctqr, datarobot, Ecfun, effects, embryogrowth, FactorsR, fastR, fastR2, fscaret, gmm, gmnl, gmum.r, GoodmanKruskal, HH, HistData, jtools, lmtest, LSAmitR, lsmeans, McSpatial, meboot, miceadds, mistat, mlogit, Morpho, mthapower, multcomp, mvMORPH, NPC, pedometrics, perturb, pglm, polywog, pscl, R2MLwiN, Rchoice, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, RcmdrPlugin.pointG, rddtools, REdaS, sand, sandwich, SenSrivastava, sjPlot, sjstats, sla, Sleuth2, Sleuth3, SMIR, strucchange, tableplot, VARSEDIG, vcdExtra, WRS2
AppliedPredictiveModeling, aurelius, aVirtualTwins, biomod2, Cubist, data.table, deepboost, discSurv, doParallel, doSNOW, emil, FastImputation, forestFloor, GAparsimony, gmum.r, GSIF, idm, Infusion, lulcc, mlr, mopa, NeuralNetTools, opera, pdp, recipes, regsem, sparsediscrim, ssc, strip, subsemble, SuperLearner
caretEnsemble, fscaret, paleofire, roughrf, taRifx
FNN, gaselect, GGally, PLSbiplot1, plsRglm, rknn, soil.spec
data.table, datetime, gsubfn, Hmisc, htmlTable, xts, zoo
archdata, bcpa, move, picante, RGraphics
animation, boostr, catdata, ChemometricsWithR, ElemStatLearn, frbs, FRESA.CAD, fscaret, hmeasure, mlr, origami, RoughSets, soil.spec, SPreFuGED, subsemble, SuperLearner, TunePareto
HSAR, httk, mapmisc, McSpatial, pals, rworldmap, tabplot, womblR
ARTool, BarcodingR, BiodiversityR, ChemometricsWithR, clues, condvis, cordillera, dendextend, dtwclust, e1071, earthtones, eclust, flexclust, freqweights, GDAtools, ggdendro, ggfortify, GMD, grImport, idendr0, languageR, mlr, nor1mix, pdfCluster, pulsar, r2d2, R2HTML, rattle, REdaS, RGraphics, robustbase, robustfa, sfsmisc, sjPlot, sprint, VisuClust
emil, goftte, Greg, mstate, pec, RcmdrPlugin.EZR, survtmle
AdMit, amen, bayesImageS, BayHaz, BBMV, bcp, bglm, bnormnlr, broom, CARrampsOcl, DiffusionRgqd, DiffusionRimp, DiffusionRjgqd, embryogrowth, gap, GeneFeST, geoCount, geoRglm, ggmcmc, glmmTMB, HDInterval, ltbayes, Luminescence, MethComp, phybreak, polyfreqs, pscl, R2BayesX, rase, rbi, rbugs, SALTSampler, shinystan, surveillance, systemicrisk, womblR, zoo
BBmisc, enaR, flexmix, formatR, incR, knitr, peperr, poweRlaw, RSiena
agridat, arsenal, benchmark, choplump, gMCP, HSAUR, HSAUR2, HSAUR3, interval, IPSUR, mlt.docreg, multcomp, partykit, perm, UsingR, vcd
aqp, cba, collapsibleTree, dendextend, DEoptim, dynamichazard, emojifont, flexsurv, gamlss.util, grImport, httk, inlmisc, LBSPR, longCatEDA, mlt.docreg, movMF, netmeta, nodiv, nonrandom, OpenStreetMap, party, psychotree, Radviz, RandomFields, rasterVis, rattle, Rcmdr, recmap, regsem, RGraphics, surveillance, SWMPr, tourr, viridis, WRS2
combiter, ecp, IPSUR, LSAmitR, MCMCglmm, needy, PhylogeneticEM, qrmtools, SNPmaxsel
aftgee, copBasic, docopulae, kyotil, mbbefd, npcp, qrmtools, robustrank, simcausal, simsalapar, simsem, zenplots
BLCOP, FAiR, NMF, picante, PortfolioAnalytics
agridat, fastR, fastR2, heplots, tableplot
boral, candisc, dendextend, eechidna, fivethirtyeight, knitrBootstrap, rattle, textreg
GlobalFit, MCDA, sybil, sybilccFBA, sybilcycleFreeFlux, sybilEFBA
commonmark, CytobankAPIstats, data.table, devtools, fauxpas, fingertipsR, googleCloudStorageR, installr, jsonlite, plotly, readr, remotes, rtypeform, showtextdb, sysfonts, xml2
DAAGbio, DAAGxtras, fastR, fastR2, ForecastFramework, IPSUR, zoo
ALA4R, assertive.types, auk, BEDMatrix, BGData, bikeshare14, checkmate, csvy, dataCompareR, datarobot, extdplyr, ForecastFramework, ggswissmaps, googleVis, h2o, iemiscdata, installr, itsadug, Lahman, lava, milr, nanotime, NEArender, padr, pander, PeakSegOptimal, PP, ProjectTemplate, propr, Rblpapi, rbokeh, rdwd, rpivotTable, rtop, seleniumPipes, sticky, taRifx, vaersNDvax, vaersvax, Xmisc
aroma.affymetrix, convey, dplyr, ETLUtils, knitr, mitools, oai, oce, pitchRx, PivotalR, ProjectTemplate, quantmod, storr, stream, survey, toxboot, TSdata, WhopGenome
bigrquery, MonetDBLite, odbc, RSQLite, RSQLServer
bigrquery, chunked, dplyr, etl, infuser, MonetDBLite, RPresto, srvyr, valr
ade4, CARBayes, dismo, ecolMod, hyperSpec, latticeExtra, liquidSVM, PBSmapping, R2Cuba, rgl, sp, subniche
lifecontingencies, SEERaBomb, smoothAPC, StMoMo, stR
circlize, CluMix, dbscan, pergola, plotly, Rnightlights
BayesianTools, MSCMT, nanop, npsp, PortfolioAnalytics, RcppDE, SACOBRA, SpaDES.tools
AquaEnv, calibrar, cOde, fda, PBSmodelling, PopED, smfsb
acmeR, alluvial, archivist, aRxiv, assertive.code, assertive.data, assertive.data.uk, assertive.data.us, assertive.matrices, assertive.models, BETS, bigstep, biomartr, biwavelet, broman, checkmate, CluMix, codyn, congressbr, covr, crunch, DataCombine, DCG, deBInfer, denoiSeq, docstring, doRNG, dparser, dpmr, DrImpute, flacco, flippant, ggExtra, ggforce, gitlabr, googleComputeEngineR, graticule, gsrc, hashmap, heuristica, hunspell, HURDAT, huxtable, IalsaSynthesis, icd9, iLaplace, inlmisc, installr, jiebaR, jpndistrict, learnrbook, letsR, likert, lime, lineup, Luminescence, manifestoR, mcglm, metafolio, mgarchBEKK, micompr, miniCRAN, modules, Momocs, MonetDBLite, mptools, myTAI, NlsyLinks, NMF, npsm, OpenMx, osmdata, osmplotr, packrat, parlitools, Perc, performanceEstimation, pkgmaker, PKPDmisc, plotly, preference, profvis, PSAboot, pulver, qtlcharts, radiomics, raw, Rcereal, Rd2md, recexcavAAR, REDCapR, redlistr, reprex, rfishbase, Rilostat, rnaturalearth, robustBLME, ropenaq, roxygen2, rpdo, rpivotTable, rsoi, Ryacas, satellite, SciencesPo, smss, spduration, stremr, SuperLearner, taxlist, testthat, texmex, umx, unitizer, unvotes, vaersvax, valr, veccompare, vegtable, vortexR, Wats, webTRISr, wikipediatrend, xoi, zebu
datafsm, FME, gamclass, heemod, IPSUR, markovchain, MetaCycle, PGRdup, RGraphics
greta, m2b, markovchain, replyr, sem, Wmisc, xgboost
anMC, kergp, mistat, mlr, mlrMBO, sensitivity
colorspace, dplR, dynamichazard, rasterVis, RGraphics, RSurvey, viridis
anonymizer, dataone, dpcR, hyperSpec, icd9, LDAvis, openssl, ProjectTemplate, R.devices, rmarkdown, robustlmm, R.rsp, rstanarm, rts, R.utils, simulator, swirlify, textmineR
bossMaps, mirt, penaltyLearning, propr, re2r
BiodiversityR, biogeo, ctmcmove, INLAutils, mapmisc, marinespeed, maxlike, sdm, soilDB
distr, distrRmetrics, distrSim, distrTEst, geoCount, IPSUR, RcmdrPlugin.IPSUR, SweaveListingUtils
bfp, datarobot, gsubfn, PracTools, R2MLwiN, rattle
BaTFLED3D, BayesFactor, Causata, ck37r, dbfaker, dcGOR, DGCA, eyetrackingR, fitTetra, JBTools, ldamatch, LEANR, lfl, lpbrim, MetaPCA, MetaQC, MFKnockoffs, SeqKat, stR, TED, upmfit
BaTFLED3D, bayesboot, bayou, clustvarsel, crawl, datafsm, data.tree, DiceKriging, dnet, doRNG, drtmle, dtwclust, EGRETci, evolqg, FREGAT, FSelectorRcpp, GA, GAparsimony, glmnetUtils, harvestr, hdnom, HTSSIP, Interatrix, intercure, msaenet, msm, NPflow, pbo, PhylogeneticEM, PLMIX, plyr, polmineR, POUMM, pROC, protr, psgp, rangeMapper, rDNAse, recmap, resemble, rpg, scanstatistics, SIBERG, simsalapar, solarius, SpatialPosition, ss3sim, stR, stremr, TcGSA, text2vec, tmlenet, toaster, treatSens, valuer, WRTDStidal, XGR
darch, doFuture, GA, GAparsimony, ptycho
afex, alluvial, ameco, archivist, assertive.types, bannerCommenter, bayesGDS, bigrquery, billboard, binford, bmlm, bodenmiller, bossMaps, BSDA, causaldrf, cbsodataR, climbeR, clustermq, codingMatrices, codyn, collapsibleTree, decoder, dendroExtra, DepthProc, describer, EbayesThresh, ecb, edgarWebR, europop, eurostat, eyelinker, feather, fiftystater, flextable, forwards, fourierin, fractional, frailtyEM, FSelectorRcpp, fueleconomy, gapminder, geex, geoknife, ggconf, ggenealogy, ggformula, ggmap, ggRandomForests, ggswissmaps, googledrive, Greg, growthcurver, hei, highlightHTML, hrbrthemes, hydrostats, imager, JacobiEigen, janeaustenr, labelled, leaflet.esri, leaflet.extras, leaflet.minicharts, lemon, loon, lucid, mapview, medicare, metricsgraphics, mixpack, MonetDBLite, monkeylearn, mosaicData, mpoly, neurobase, neurohcp, nycflights13, nzelect, openEBGM, pitchRx, powerlmm, purrr, qualvar, questionr, R6Frame, rAltmetric, randomizr, raptr, raw, RDML, readODS, recexcavAAR, reval, rex, rivr, rmonad, robotstxt, rODE, ROpenFIGI, rpivotTable, RPresto, rslp, rsparkling, rtable, rtdists, rtide, rtypeform, sf, shinyAce, SimDesign, simmer, simputation, SpaDES.tools, sparseHessianFD, sparseMVN, spup, statisticalModeling, sticky, Tcomp, tempcyclesdata, testassay, TH.data, tibble, tictactoe, tilegramsR, titanic, tmap, trelliscope, tropr, uncmbb, unvotes, vaersNDvax, vaersvax, VIM, vkR, vtreat, wikipediatrend, wrswoR, wrswoR.benchmark
AmyloGram, beanz, benchmarkme, benchmarkmeData, BIGL, compareGroups, covr, decoder, dpcR, eemR, evaluator, formattable, idem, passport, plantecophys, qualvar, quanteda, signalHsmm, subscreen, valr, weco, xtractomatic
ChemometricsWithR, IncDTW, parallelDist, refund, rucrdtw
A3, arulesCBA, aurelius, batchtools, benchmark, BiodiversityR, boostr, c2c, caret, caretEnsemble, catdata, ChemometricsWithR, classifly, clue, coin, crtests, Daim, emil, ensembleR, ExplainPrediction, FastImputation, flacco, forestFloor, frbs, fscaret, GAparsimony, gmum.r, GROAN, IPSUR, klaR, languageR, mistat, MLmetrics, mlr, partools, pdp, performanceEstimation, pmml, pvar, rattle, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, ripa, RStoolbox, RWeka, simglm, soil.spec, spaMM, SPreFuGED, ssc, strip, strucchange, subsemble, SuperLearner, tmle.npvi, TunePareto, UBL, utiml, VBmix
binst, BiodiversityR, caret, eclust, ElemStatLearn, fscaret, mda, mlr, mlrMBO, pdp, plotmo, rpart.plot, subsemble, SuperLearner
catdata, DCchoice, discSurv, Ecfun, gamclass, intReg, micEcon, micEconIndex, miscTools, sampleSelection, SeleMix
acss, AER, agridat, BiodiversityR, heplots, HistData, psychomix, RcmdrPlugin.IPSUR, RcmdrPlugin.pointG, vcdExtra
casebase, decisionSupport, flexsurv, mlt.docreg, rstpm2, simsurv
AppliedPredictiveModeling, BiodiversityR, caret, emdbook, fanc, flexclust, flexmix, fscaret, geostatsp, logmult, MetaPCA, nlmeU, plgp, rattle, robustfa, rrcov
cdcsis, dimRed, FAiR, shotGroups, steadyICA
distrMod, modeest, SCI, sensitivity, TLMoments
ape, centiserve, diversitree, flacco, Matrix
DeLorean, eemR, EGRET, fontcm, ggmcmc, ggThemeAssist, ggthemes, RcmdrPlugin.KMggplot2, SciencesPo, tagcloud
DiscriMiner, explor, forwards, MetaQC, plsdepot, plspm
bglm, fastR, fastR2, quantoptr, stripless
caret, ChemometricsWithR, coloredICA, dimRed, fGarch, fmri, fscaret, NMF, ProjectionBasedClustering, recipes, spant, steadyICA, yaImpute
caschrono, cati, lawstat, mlDNA, modeest, rattle, stabledist
DepthProc, DrBats, FDboost, freqdom, QZ, sos
blackbox, credsubs, Hmisc, LinkedMatrix, nat.nblast, RMOA, spaMM, symDMatrix
ctmm, fftwtools, monitoR, psd, ripa, seewave, waveslim
AER, caschrono, fPortfolio, ggfortify, portes, PortfolioAnalytics, sarima, simsalapar
asymLD, backShift, bamlss, bigGP, climatol, CompRandFld, crimelinkage, EFDR, ensembleBMA, ensembleMOS, expectreg, extRemes, FDboost, GeneralizedUmatrix, gstat, HelpersMG, IceCast, IPMpack, lava, MBHdesign, mboost, mlr, npsp, palaeoSig, phenology, ProjectionBasedClustering, RSA, smoothie, spam, spant, SpatioTemporal, spTest, Thermimage
AICcmodavg, LindleyR, mc2d, mle.tools, raw
catdata, HSAUR, HSAUR2, HSAUR3, rebmix, tlemix
gcKrig, marinespeed, mlr, SACOBRA, smotefamily
forwards, ggjoy, ggridges, nzelect, questionr, sweep, tidyquant, timetk
antaresRead, BayesFactor, blackbox, combiter, darch, datafsm, data.tree, dcGOR, DEoptim, DiceKriging, dnet, dplR, EGRETci, evolqg, eyetrackingR, FinancialInstrument, fitTetra, FREGAT, fxregime, GMCM, Interatrix, iterpc, itertools, kergp, kselection, lava, merTools, msm, neuroim, NPflow, pbo, plyr, pre, protr, ptycho, RBesT, rDNAse, rioja, ripa, rpg, scanstatistics, simsalapar, Smisc, spaMM, SpatialPosition, StepwiseTest, stremr, strucchange, TcGSA, tmlenet, treatSens, valuer, XGR
AER, aurelius, caschrono, corset, dplR, gamclass, ggfortify, lifecontingencies, mFilter, origami, pander, portes, rainbow, sophisthse
AER, aqp, biomod2, CARBayes, causaldrf, dataverse, dynBiplotGUI, gap, getmstatistic, ImportExport, mi, miceadds, migui, mitools, multcomp, Nippon, oce, papeR, PBSmapping, prabclus, PracTools, ProjectTemplate, rattle, Rcmdr, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, REdaS, rfordummies, RGIFT, semTools, separationplot, simsem, SMIR, spacetime, spData, spdep, survey, vocaldia
DeLorean, dynamichazard, elevatr, knitr, manifestoR, pinbasic, ProjectTemplate, pvar, reprex, shinyWidgets, SqlRender
binst, clubSandwich, data.tree, evtree, HSAUR3, LTRCtrees, metafor, psychotools, quantreg
agridat, arsenal, BiodiversityR, biomod2, broom, caret, DiceEval, drtmle, earth, ElemStatLearn, fscaret, LinRegInteractive, locfit, medflex, oddsratio, slp, sm, ssym, subsemble, SuperLearner, tmle.npvi, tsModel, yaImpute
aods3, bamlss, broom, depmixS4, gamboostLSS, hnp, mice, mlt.docreg, MNM, PerformanceAnalytics, surveillance
depmixS4, fitdistrplus, gamboostLSS, hnp, PerformanceAnalytics
magick, margins, passport, plotluck, repurrrsive, tidyr, unjoin, widyr
AzureML, BiodiversityR, caretEnsemble, crimelinkage, dismo, fscaret, mboost, mlr, ModelMap, opera, pdp, plotmo, pmml, preprosim, subsemble, SuperLearner
cba, chemometrics, flexmix, pergola, upclass
bst, data.table, HistogramTools, httk, ipdw, kernscr, MetaQC, MonetDBLite, nmfgpu4R, plotMCMC, poliscidata, popReconstruct, primer, ProjectTemplate, rattle, rfigshare, scape, SII, SMIR, solarius, sorvi, taRifx, TH.data, umx
ape, BCgee, catdata, dlnm, geex, HSAUR, HSAUR2, HSAUR3, longpower, lsmeans, SimCorMultRes, simstudy, slim
broom, catdata, clubSandwich, cpr, dlnm, doBy, etm, fastpseudo, geeM, geex, lava, lsmeans, mason, meboot, mitml, MRCV, MuMIn, sandwich, tableone, TPEA
BBMV, diversitree, ouch, phytools, Reol, RNeXML, speciesgeocodeR
DatABEL, FREGAT, MetABEL, MultiABEL, NAM, PredictABEL, ranger, RVPedigree, VariABEL
esreg, mlr, MSCMT, PortfolioAnalytics, RandomFields, simLife
DatabionicSwarm, mclust, phylin, ptinpoly, RTriangle, stm
bamlss, gamair, gear, geoBayes, georob, ipdw, npsp, pedometrics, prevR, RandomFields, rpanel, simba, SpatialPack, spBayes
ALA4R, BiodiversityR, GGally, IceCast, mapmisc, memgene, sf, speciesgeocodeR
BAS, eechidna, httk, mlrMBO, nzelect, ParamHelpers, plotly, qualvar, robustbase, SHELF, spup, survivALL, texmex
clifro, geoknife, geomnet, ggquiver, ggsn, macleish, mapr, move, photobiology, photobiologyInOut, rnoaa, ropenaq, RSMET, stormwindmodel
ggjoy, ggplot2, ggridges, metricsgraphics, plotluck
Census2016, geomnet, ggfortify, ggpmisc, grattan, sjPlot
fitbitScraper, fivethirtyeight, ggalt, ggmcmc, iNEXT, iNextPD, nzelect, plotly, quickReg, tigris
drat, envDocument, gistr, nat.templatebrains, Rcereal, remotes
bigstatsr, BiodiversityR, broom, bWGR, caretEnsemble, catdata, ck37r, CompareCausalNetworks, EBglmnet, eclust, emil, fbRanks, FeatureHashing, flexmix, FRESA.CAD, fscaret, ggfortify, heuristica, LSAmitR, medflex, MFKnockoffs, mlr, ModelGood, NAM, nscancor, ordinalNet, plotmo, pmml, pulsar, randomForestSRC, regsem, RLT, sAIC, simputation, simulator, SPreFuGED, sqlscore, stabs, STPGA, subsemble, SuperLearner, text2vec, varbvs, WeightedROC
minval, sybil, sybilccFBA, sybilcycleFreeFlux, sybilEFBA
arulesCBA, httk, RcmdrPlugin.NMBU, Sleuth2, Sleuth3, vcdExtra
BayesNetBP, bayesTFR, Kmisc, Lahman, NanoStringNorm, spacetime, tfplot, vegdata
FAiR, Lambda4, psych, REdaS, semTools, sjPlot, TAM
automap, BayesX, lgcp, polyCub, spatsurv, surveillance, UScensus2010
anomalyDetection, clusternomics, compendiumdb, condvis, dendextend, dendsort, DGCA, enveomics.R, FRESA.CAD, gmodels, heplots, HistData, httk, matR, MKmisc, mlDNA, OmicsPLS, PerformanceAnalytics, protiq, rattle, RGraphics, rich, sim1000G, simba
circlize, corrgram, Ecfun, RGraphics, speaq
aimPlot, autoimage, bayesplot, braidReports, cate, cda, copula, ddpcr, disclapmix, dtwSat, eechidna, eesim, EFDR, evolqg, FField, fivethirtyeight, frailtyEM, frailtySurv, funData, futureheatwaves, ggalt, ggbeeswarm, ggjoy, ggmcmc, ggQC, ggridges, ggsci, hhh4contacts, HistData, hrbrthemes, hyfo, ifaTools, IncDTW, iNEXT, iNextPD, jcolors, KSD, LSAmitR, ltbayes, mcMST, medicalrisk, mlrMBO, mlt.docreg, mlxR, naniar, npregfast, ParamHelpers, planar, pmc, raptr, rattle, RcmdrPlugin.MA, RGraphics, rotations, rpf, rstanarm, RStoolbox, SCGLR, sgd, simstudy, sjPlot, Sofi, solarius, spup, StatRank, stormwindmodel, surveillance, texmex, tukeytrend, vortexR, walker, walkr
Bessel, BTYDplus, maRketSim, metafor, PearsonDS, scoringRules, spatstat, surveillance, TunePareto, uGMAR
agridat, berryFunctions, climatol, dismo, FRK, gear, georob, GWmodel, ipdw, mgraph, npsp, pedometrics, portes, sos4R, sp, spacetime, spcosa, spsann
assignPOP, braidReports, ggpubr, oddsratio, pander, RAM, SciencesPo, spikeSlabGAM
DOBAD, fdapace, gmodels, HistData, LSAmitR, MetaQC, MFKnockoffs, nonparaeff, paleofire, PLMIX, QFASA, rattle, R.filesets, sensitivity, sirt, vhica
baseline, ENmisc, LifeTables, MixSIAR, ProgGUIinR, RGraphics, vegdata
apt, dbConnect, gimme, LifeTables, MixSIAR, ProgGUIinR, rattle, RGraphics, RGtk2Extras, TopKLists
data.table, ggconf, ggmap, ggplot2, lidR, poliscidata, RGraphics, RnavGraph, survey, viridis, viridisLite
CodeDepends, derivmkts, parallelDist, Rcpp, RcppArmadillo, RcppClassic, RcppCNPy, RcppGSL, RcppZiggurat, RProtoBuf
abd, ascii, asVPC, BB, bbmle, bfp, BIFIEsurvey, biomod2, broom, causaldrf, CFC, Deducer, denstrip, dtwSat, emil, epade, fastR, fastR2, fscaret, ggplot2, GMCM, GSIF, hdnom, heemod, horseshoe, htmlTable, IPSUR, kamila, kyotil, languageR, lulcc, MARSS, miceadds, MissingDataGUI, mlr, nlme, nLTT, pec, PerformanceAnalytics, planar, plotKML, PopED, PSCBS, rattle, Rcmdr, RcmdrPlugin.pointG, rex, RGraphics, rknn, Rmisc, rockchalk, Rz, separationplot, simcausal, simsalapar, sjlabelled, sjmisc, sjstats, Sleuth3, smcUtils, StatMatch, subsemble, SuperLearner, tangram, TCGAretriever
covr, fontquiver, FSelectorRcpp, gdtools, LDAvis, mschart, networkD3, parlitools, polmineR, qtlcharts, rhandsontable, rpivotTable, rvg, stringr, svglite, svgPanZoom, unpivotr
bookdown, covr, data.tree, knitr, muir, ndtv, parlitools, plumber, reactR, replyr, stringr
AlphaVantageClient, crplyr, crunch, httpcache, rGoodData
curl, googleVis, httr, vkR, webshot, webutils
aemo, bio3d, biolink, CopulaDTA, CytobankAPIstats, datapack, dynamichazard, fauxpas, fbRanks, finch, HARtools, highcharter, htmltidy, inlmisc, jsonlite, leafletR, memoise, nat, neurobase, oasis, packrat, Rcereal, rnaturalearth, soilDB, stubthat, viridis, xml2
CompareCausalNetworks, edgebundleR, LICORS, pulsar, sand, smart, stabs, stm, themetagenomics
devtools, fivethirtyeight, quickPlot, reproducible, SpaDES.core, SpaDES.tools
anocva, bcp, bio3d, blackbox, ccdrAlgorithm, ConnMatTools, data.tree, dbscan, DGCA, dimRed, diverse, dna, enaR, factoextra, fivethirtyeight, geomnet, GGally, igraphdata, isa2, knitrBootstrap, lava, lfe, Libra, loe, madrat, NetSim, NetworkInference, NetworkRiskMeasures, osmar, paramlink, raster, rbmn, recipes, replyr, repo, rgp, RGraphics, rIsing, rnetcarto, rodham, rtop, rvinecopulib, sensitivity, sirt, smotefamily, SpaDES, sparsebn, sparsebnUtils, spdep, spdynmod, stabs, stampr, stm, surface, TDAmapper, themetagenomics, tmlenet, TNC, treespace, tropr, TunePareto, visNetwork, vkR, vocaldia, widyr, xgboost
covafillr, dlib, hyperSpec, kergp, MfUSampler, miceadds, Rclusterpp, Rcpp, RcppClassic, RcppDE, RcppEigen, RcppGSL, Rmalschains, rust, themetagenomics
aurelius, caret, caretEnsemble, ChemometricsWithR, Daim, ensembleR, fscaret, mlr, party, pdp, RGraphics, sperrorest, subsemble, SuperLearner
assignPOP, DEoptim, dplR, EGRETci, liqueueR, plyr, PortfolioAnalytics, solarius
ALA4R, GMCM, HistData, httr, knitr, pdftools, ReporteRs, RImagePalette, ripa, RNiftyReg, rscopus, rsvg, splashr, vkR, webp
ChemoSpec, cowsay, crul, curl, CytobankAPIstats, d3r, DataExplorer, data.tree, dismo, DT, finch, futile.logger, io, jqr, kgschart, listviewer, metricsgraphics, networkD3, openssl, passport, pollstR, qtlcharts, quantmod, rAmCharts, repurrrsive, rio, soilDB, sunburstR, sysfonts
BiodiversityR, bWGR, caret, caretEnsemble, colorspace, CompareCausalNetworks, conformal, dimRed, dismo, evtree, FactorsR, fscaret, gamclass, GAparsimony, loon, mistral, mlr, mlrMBO, MSCMT, pdp, pmml, preprocomb, rattle, recipes, RStoolbox, sand, SuperLearner, supervisedPRIM, vcd
AER, aroma.core, bpkde, cholera, colorspace, copula, EMMIXcskew, EMMIXuskew, gridGraphics, gsrc, HistData, HSAUR, HSAUR2, HSAUR3, integIRTy, kernelboot, LaplacesDemon, latentnet, lattice, lava, lessR, MRS, MSG, MVA, NCmisc, openair, PBSmodelling, rstan, simsem, stm, survey, vcd
coxme, gap, Mangrove, pbatR, seqMeta, solarius
assignPOP, caret, caretEnsemble, fscaret, gmum.r, hda, mlr, TunePareto
covmat, DeLorean, fitdistrplus, markovchain, mbbefd, milr, poppr, reports, RNeXML, wrswoR
clusterfly, clValid, fscaret, mlr, RankAggreg
broom, fdapace, httk, Infusion, kernelboot, sensitivity, transport
baseballDBR, broom, dbplyr, dplyr, dtplyr, implyr, mdsr, pinnacle.data, poplite, raw
ChemometricsWithR, COBRA, directlabels, dna, ElemStatLearn, fscaret, glmnet, knockoff, lassoscore, Libra, MFKnockoffs, mvtboost, scout, stabs
acss, Actigraphy, ade4, AER, afex, AppliedPredictiveModeling, BaBooN, baseline, beanplot, betareg, binom, bio3d, BiodiversityR, bnlearn, cati, CDM, ChemoSpec, ChoiceModelR, CombMSC, contrast, copCAR, CORElearn, CorrBin, DAAGxtras, DCG, dclone, denstrip, DEoptim, desirability, DiceDesign, directlabels, diveMove, dyn, EnvStats, ergm, evaluate, evtree, fda, fourierin, FuncMap, gamair, gamlss.add, gap, gcKrig, geoR, georob, gge, ggformula, ggplot2, glmertree, glmmTMB, glogis, greta, gridBase, gridDebug, gridExtra, gridSVG, grImport, gsubfn, hamlet, heplots, hextri, hhh4contacts, HistData, HSAUR, HSAUR2, HSAUR3, ICAOD, IPSUR, IsoriX, JoSAE, KRLS, Lahman, languageR, LDheatmap, libamtrack, Lock5withR, LPCM, LPTime, LSAmitR, lsmeans, lucid, marmap, MASS, mbbefd, mcglm, MEMSS, meteoForecast, MethComp, mi, microplot, mlbench, mlmRev, mlogit, mlt.docreg, Morpho, mosaicData, movMF, MPDiR, mrgsolve, multilaterals, multipanelfigure, mutoss, MVA, nlmeU, npmlreg, nutshell, Oncotree, OrgMassSpecR, pacman, pagenum, pander, PBImisc, pdc, Perc, PKPDmodels, planar, polyCub, polywog, preprocomb, protViz, pscl, psyphy, ptest, r2d2, rbokeh, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, RcppDE, RcppZiggurat, remote, reshape2, RFLPtools, rfordummies, rgl, RMark, robustbase, robustfa, robustX, rpanel, rtdists, rtf, sand, sandwich, SASmixed, SCEPtER, SCEPtERbinary, SemiPar, sfsmisc, simecol, simLife, simsalapar, Sleuth2, Sleuth3, SMIR, soilDB, SoilR, spdep, sperich, SPSL, STAR, StatRank, stellaR, subniche, subsemble, SuperLearner, surveillance, tableplot, TAM, taRifx, TeachingDemos, tergm, texmex, tmvtnorm, topicmodels, TrackReconstruction, ustyc, vcdExtra, vipor, wCorr, WeightedCluster, wux, XLConnect
afex, agridat, aqp, dexter, directlabels, ergm, gcKrig, hnp, lattice, mcglm, microplot, mirt, mlt.docreg, mountainplot, pals, pbo, RGraphics, Rmisc, rtdists, survSNP, tdr
AICcmodavg, dagitty, ionr, LAM, LSAmitR, metaSEM, OLScurve, psych, semtree, STARTS, TAM
blscrapeR, cycleRtools, geojsonio, hddtools, lawn, macleish, manipulateWidget, openadds, owmr, parlitools, rdefra, rdwd, RgoogleMaps, Rnightlights, rnoaa, RSurvey, statesRcontiguous, synthACS, tigris, tilegramsR, wellknown
car, ChemometricsWithR, DAAG, ElemStatLearn, fscaret, gamclass, glmulti, Rcmdr, RcmdrPlugin.NMBU, SenSrivastava, Sleuth2, Sleuth3, STPGA
BayesianTools, DiceOptim, flacco, GAparsimony, kergp, laGP, mistat, moko, ParamHelpers, SACOBRA, vdg
biolink, BTYDplus, caretEnsemble, dat, datarobot, datastructures, DBItest, describer, devtools, diffusr, easyml, edpclient, FSelectorRcpp, geofacet, ggfortify, ggthemes, jwutil, modules, opencage, Plasmidprofiler, rbokeh, rex, rodham, ropenaq, tuber, virustotal
agridat, AICcmodavg, ANOM, aod, AzureML, BayesFactor, benchmark, BGData, BIFIEsurvey, broom, car, catdata, DAAG, dlnm, doBy, DySeq, Epi, expp, eyetrackingR, flexmix, gamair, glmulti, gmodels, hamlet, HLMdiag, hnp, HSAUR, HSAUR2, HSAUR3, iccbeta, irtrees, jtools, KFAS, kulife, kyotil, LAM, languageR, lava, likelihoodAsy, lmeresampler, lsmeans, lucid, MESS, meta, metafor, MethComp, mice, mitml, mixlm, multcomp, MuMIn, mztwinreg, NAM, NanoStringNorm, OpenMx, ordinal, pan, pez, phia, phmm, polypoly, psych, purge, R2admb, r2glmm, RcmdrPlugin.NMBU, rmcorr, samplingDataCRT, SASmixed, simglm, slim, spaMM, tableone, texreg, TripleR
ARTool, groupdata2, hamlet, languageR, lsmeans, neuropsychology, simr, sjPlot, sjstats, standardize
broom, car, censReg, crch, ctqr, FactorsR, fxregime, gmnl, IPSUR, jtools, meboot, multcomp, multiwayvcov, oglmx, pglm, POUMM, pscl, psychomix, R2MLwiN, Rchoice, Rcmdr, RcmdrPlugin.IPSUR, sampleSelection, sandwich, sjPlot, strucchange, vcdExtra
DAAGbio, kaps, mFilter, peperr, reldist, spatstat, tmlenet
ARTool, broom, RVAideMemoire, standardize, xtable
crawl, diversitree, fivethirtyeight, ggformula, ggvis, githubinstall, GSODR, HistData, hms, htmlTable, Lock5withR, marcher, mdsr, mosaic, oce, padr, pivottabler, ProjectTemplate, rAmCharts, raw, rdpla, roadoi, rtimes, statar, unvotes, UsingR, wbstats, wingui, xtractomatic
dlib, hypervolume, kableExtra, mem, memapp, replyr, rgl, tesseract
arsenal, assertr, backpipe, bayesAB, bossMaps, brr, Census2016, checkmate, curl, DBI, eemR, ensurer, errorlocate, evolqg, exprso, fivethirtyeight, fold, formula.tools, freesurfer, FSelectorRcpp, ggstance, glue, hyper2, icd9, imputeTestbench, infuser, intubate, lettercase, LW1949, medicare, MESS, mosaic, mpoly, mschart, ngramrr, odbc, ompr, ompr.roi, operator.tools, palettetown, pkggraph, pomp, rAltmetric, rAmCharts, recexcavAAR, regexPipes, ReporteRs, Rga4gh, RInno, rio, rmapshaper, rmetasim, setter, shiny, SocialMediaLab, soql, spAddins, spant, sticky, stremr, texPreview, tidyjson, TLMoments, toxboot, units, wikipediatrend, windfarmGA, WRTDStidal, xml2, zeallot
ALA4R, anim.plots, bamlss, climatol, FDboost, ggfortify, gstat, maps, marmap, openair, rerddap, RGraphics, sos4R, spacetime, waterData, xtractomatic
agridat, colorplaner, CompRandFld, dams, dggridR, eurostat, fiftystater, FRK, futureheatwaves, GGally, ggplot2, ggspatial, ggthemes, knitrBootstrap, latticeExtra, MapGAM, maps, marmap, mosaic, move, natserv, nzelect, RAM, viridis
adegenet, agridat, ALA4R, anim.plots, aqfig, aqp, bamlss, BIEN, broom, climatol, colorplaner, dams, dggridR, Ecfun, ecolMod, ensembleBMA, ensembleMOS, FDboost, fetchR, futureheatwaves, fuzzyjoin, geoknife, GEOmap, GGally, ggiraph, ggiraphExtra, ggplot2, ggquiver, ggthemes, gstat, HelpersMG, HistData, HSAUR3, iplots, IsoriX, knitrBootstrap, kriging, latticeExtra, leaflet, lga, loon, MapGAM, maptools, marmap, MARSS, MazamaSpatialUtils, medicare, Mobilize, natserv, nzelect, openair, plotly, qualpalr, R2BayesX, rainfreq, raw, RcmdrPlugin.pointG, recmap, remote, rgbif, rgeos, RGraphics, rpanel, scatterpie, scrubr, sf, sfdct, sos4R, spacetime, spaMM, SpatioTemporal, spbabel, SSsimple, threejs, tikzDevice, TSP, waterData, widyr
ade4, adegraphics, adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, adespatial, ALA4R, AMOEBA, aqp, automap, bamlss, BIEN, BiodiversityR, broom, CARBayes, cartogram, ckanr, dismo, eechidna, ENMeval, gamlss.spatial, GeoXp, ggplot2, graticule, GSIF, gstat, Guerry, HSAR, HSAUR3, inlmisc, IsoriX, knitrBootstrap, mapr, maps, mosaic, move, OpenStreetMap, osmplotr, PBSmapping, plotKML, prabclus, prettymapr, R2BayesX, rangemodelR, rgeos, RgoogleMaps, RGraphics, rioja, RObsDat, SDMPlay, secr, sf, shadow, sos4R, sp, spacetime, spatstat, spbabel, spData, spdep, spdplyr, speciesgeocodeR, spgwr, subniche, surveillance, TeachingDemos, TSP
AmyloGram, BayesFactor, chipPCR, derivmkts, doFuture, dpcR, future, future.BatchJobs, future.batchtools, GetoptLong, GlobalOptions, htmltools, MazamaSpatialUtils, microplot, multipanelfigure, polmineR, profmem, Rcmdr, R.rsp, sasMap, scdhlm, shiny, sunburstR, whisker
AdaptiveSparsity, afex, blockmodeling, broom, car, CARBayes, cccd, ChoiceModelR, classGraph, corrgram, cpr, ddR, DGCA, dils, dimRed, discSurv, e1071, ESEA, extraTrees, eyetrackingR, fGarch, flacco, FSelectorRcpp, funrar, gap, gcKrig, gear, gemtc, gmodels, h2o, hamlet, hdi, HSAUR, HSAUR2, lava, lda, lfactors, LncPath, loe, matrixpls, mefa, mlt.docreg, NCmisc, neat, PAGI, pcalg, pergola, prc, PRIMME, rARPACK, rattle, RcppArmadillo, R.matlab, Rmpfr, rmumps, robustbase, robustvarComp, rope, rstan, scidb, sfsmisc, sirt, solarius, SpaDES.core, spam, sprint, sptm, srvyr, stabledist, STPGA, SweaveListingUtils, tableone, zenplots
DatabionicSwarm, dtree, GeneralizedUmatrix, LSAmitR, MetaQC, MPAgenomics, MultiBD, tmlenet
catdata, Daim, fscaret, HSAUR2, HSAUR3, mlr, spikeSlabGAM, sqlscore, stabs
AdaptGauss, broom, ChemometricsWithR, ChemoSpec, clusterfly, clusternomics, clValid, factoextra, HSAUR, HSAUR2, HSAUR3, Infusion, KSD, LogConcDEAD, mixpack, MVA, qVarSel, RankAggreg, rebmix, REdaS, robustfa, rrcov, StatDA, Umpire
agridat, brms, gap, IPMpack, lsmeans, miceadds, rotl
BayesDA, bayesGDS, DOBAD, dyn, frontier, glmmTMB, greta, harvestr, IPMpack, lsmeans, MultiBD, PLMIX, pscl, Rlda
BiodiversityR, caret, DiceEval, earth, ElemStatLearn, flacco, fscaret, GSIF, HandTill2001, mlr, pdp, subsemble, SuperLearner
covr, functools, icd9, leaflet.esri, leaflet.extras, surveillance
bayesmeta, clubSandwich, forestmodel, MAc, MAd, meta, metansue, metaplotr, metaSEM, mvmeta
agridat, ALA4R, BCEA, BiodiversityR, biomod2, broom, caret, catdata, CompareCausalNetworks, ctmcmove, diseasemapping, dplyr, dynamichazard, earth, fdapace, flexmix, ForeCA, freqparcoord, fscaret, gamair, GeneralizedUmatrix, ggplot2, ggvis, granova, heemod, HSAUR2, HSAUR3, kernDeepStackNet, latticeExtra, lazyData, LinRegInteractive, MatchIt, mediation, mlt.docreg, MuMIn, myTAI, opera, plotluck, ProjectionBasedClustering, pscl, Rcmdr, RcmdrPlugin.IPSUR, rpanel, rstanarm, simex, soil.spec, VGAM
BaBooN, cobalt, hdnom, Hmisc, HSAUR3, Lambda4, lavaan.survey, LSAmitR, mdmb, medflex, midastouch, MissingDataGUI, mitml, NNLM, rattle, semTools, sjmisc
CDM, hot.deck, LSAmitR, mitml, sirt, TAM
AhoCorasickTrie, base64url, BBmisc, biwavelet, bnclassify, brotli, checkmate, coga, dbscan, deBInfer, dendextend, dotCall64, dplyr, flippant, fromo, FSelectorRcpp, GauPro, gRain, gRbase, h5, hashmap, icd9, IncDTW, JacobiEigen, kernDeepStackNet, Kmisc, matchingR, matrixStats, mistral, mvnfast, nLTT, NPflow, pander, penaltyLearning, PGRdup, phonics, POUMM, prcbench, pROC, profmem, R6, ratelimitr, RcppMsgPack, RcppRoll, RcppTN, RcppZiggurat, re2r, revdbayes, rscala, rtrie, rust, seismicRoll, sf, simPop, SpaDES.tools, tibble, uniqueAtomMat, valr, WeightedROC, Wmisc, wrswoR
blogdown, bookdown, cronR, googleAnalyticsR, listviewer, reprex, rhandsontable, taskscheduleR
cycleRtools, dcemriS4, nlmrt, nlsr, oro.pet
blackbox, diversitree, fdapace, icsw, metafor, msm, RandomFields
hot.deck, lavaan.survey, medflex, mice, MImix, pan, R2MLwiN, smcfcs, survey
archetypes, boostr, Boruta, caret, caretEnsemble, ck37r, clusterSim, Cubist, datarobot, doParallel, doSNOW, e1071, evtree, flacco, flexmix, fscaret, FSelector, FTRLProximal, gamclass, GAparsimony, gmum.r, h2o, HSAUR3, IPMRF, ipred, itree, klaR, mboost, mlearning, mlr, mlt.docreg, neighbr, party, partykit, performanceEstimation, pre, randomForestSRC, RBPcurve, RODM, RWeka, spikeSlabGAM, subsemble, SuperLearner, zooimage
afex, clubSandwich, glmmTMB, HLMdiag, lme4, lmeresampler
AER, catdata, catspec, flexmix, generalhoslem, McSpatial, mlogitBMA
BLCOP, brms, fAssets, MoTBFs, semTools, vita
AlphaVantageClient, cranlike, debugme, keyring, prettycode, rGoodData, secret, sessioninfo, subprocess, tracer
BaylorEdPsych, fromo, geex, LambertW, pedometrics, PoisBinOrdNonNor
ggformula, Lock5withR, mosaicCore, mosaicData, NHANES, Sleuth2, Sleuth3
flexsurv, markovchain, oro.pet, RcppTN, surveillance
dynpred, Epi, msm, popEpi, riskRegression
afex, benchmark, BiodiversityR, broom, doBy, DoseFinding, ETC, evtree, fastR, fastR2, FixSeqMTP, flexmix, georob, ggplot2, HSAUR2, HSAUR3, languageR, mcprofile, metafor, MHTdiscrete, microbenchmark, mlt, mlt.docreg, mratios, multcompView, MVA, psychotools, Rcmdr, RcmdrPlugin.EZR, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, Sleuth3
acopula, Anthropometry, aucm, bayesGDS, bivrp, BLModel, BNSP, bpkde, ccaPP, CerioliOutlierDetection, chngpt, colorspace, coxme, cubature, densratio, DepthProc, DetMCD, DetR, disp2D, docopulae, ecp, EstimateGroupNetwork, FastHCS, FastPCS, FastRCS, fCopulae, flexmix, FNN, gamreg, gconcord, glmlep, gmm, greta, hda, HH, HSAUR, HSAUR2, HSAUR3, hyperSpec, IPMpack, ipred, IPSUR, jocre, KSD, kyotil, laGP, longclust, mcglm, MCMCglmm, metafor, MfUSampler, mistat, MNM, MVA, mvnfast, NPC, nsROC, OpenMx, partykit, pawls, pcalg, polyCub, PortfolioOptim, POUMM, prabclus, pscl, QICD, qrmtools, R2Cuba, RandomFields, RcmdrPlugin.EZR, RcmdrPlugin.NMBU, RcppNumerical, robustHD, robustrank, robustvarComp, rodd, sBIC, sensitivity, simcausal, simFrame, simulator, snht, SNPmaxsel, sparsebn, SparseGrid, sparseLTSEigen, sparseMVN, spTest, sptm, stochvol, strucchange, stsm, SuperGauss, threeboost, tlemix, vcd, WPKDE
bio3d, camsRad, climatol, HelpersMG, npphen, oce, raster, RCMIP5, rnoaa
amen, broom, GGally, GGMselect, ggraph, pulsar, rDNA, RDS, RGraphics, RSiena, sand, sparsebnUtils, sspse, texreg, tidygraph
data.tree, lazyrmd, rcv, themetagenomics, Zelig
fscaret, mlr, NeuralNetTools, nnetpredint, plotmo
AER, agridat, ANOM, boxcoxmix, car, CARBayes, clubSandwich, Crossover, data.table, directlabels, effects, Epi, fda, ForeCA, FRESA.CAD, gamair, gap, ggfortify, ggplot2, ggpmisc, gmodels, GSIF, hamlet, heplots, HLMdiag, ipw, kyotil, LinRegInteractive, lmeresampler, lmerTest, maSAE, MASS, mice, mitml, mratios, multcomp, MuMIn, MVA, mvmeta, nCal, npmlreg, pander, papeR, pgirmess, phia, plotluck, PopED, primer, psyphy, r2glmm, R2HTML, raw, Rcmdr, RcmdrPlugin.IPSUR, regress, rggobi, RMark, robustvarComp, rpql, rsae, scam, sfsmisc, simex, simglm, soil.spec, texreg
afex, car, CEGO, drtmle, metafor, mirt, MSCMT, PortfolioAnalytics, RandomFields, RobustGaSP, SACOBRA, SuperLearner
AER, AICcmodavg, aplore3, bayesMCClust, BiodiversityR, boostr, broom, caret, caretEnsemble, catdata, causaldrf, ChemometricsWithR, discSurv, DynTxRegime, e1071, ExplainPrediction, fscaret, GAparsimony, generalhoslem, glmulti, GSIF, HandTill2001, hnp, huxtable, lda, lsmeans, MASS, MatchIt, mboost, mi, mlDNA, mlogit, mlr, mlrMBO, mlt, mlt.docreg, mnlogit, MuMIn, nnetpredint, ordinal, pdp, performanceEstimation, pmml, psychomix, R2HTML, race, rattle, Rcmdr, RcmdrPlugin.IPSUR, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, relimp, ROSE, seqHMM, sperrorest, SPreFuGED, subsemble, SuperLearner, validann, VBmix, vcdExtra, VRPM
FactorsR, GSIF, jtrans, LambertW, ppcc, Rcmdr
aster, automultinomial, BB, cccp, discSurv, diversitree, docopulae, DoseFinding, emdbook, flacco, flexsurv, GauPro, gcKrig, glmx, gof, hhh4contacts, KFKSDS, LambertW, lfe, lme4, meta, metafor, mlr, msm, nlmrt, nlsr, OpenMx, pso, psychomix, regsem, ROI, rpf, RSSL, schumaker, smooth, sna, sparseHessianFD, stsm, stsm.class, SuperGauss, surveillance, TestFunctions, TMB, ucminf
dat, datacheckr, DataExplorer, dbplyr, dplyr, dplyrAssist, dtplyr, implyr, MonetDBLite, raw, rsolr, sparklyr, tibble, writexl
ACDm, afex, bbmle, dimRed, heemod, IRTpp, languageR, lava, lme4, nlmrt, RandomFields, regsem
cobalt, MatchIt, MatchItSE, matchMulti, rcbalance, rcbsubset, RcmdrPlugin.EZR, Zelig
agridat, AICcmodavg, catdata, dotwhisker, effects, generalhoslem, lsmeans, mlt.docreg, RVAideMemoire, sensR, sure
caret, emil, fscaret, mlr, VHDClassification
ACMEeqtl, arsenal, ARTool, atsd, backShift, bcRep, beanz, clifro, countyweather, dataPreparation, dMod, fingertipsR, flippant, GCalignR, ggthemes, grpSLOPE, gWQS, htmlTable, hurricaneexposure, idem, Luminescence, mbbefd, Mediana, NetworkInference, NIPTeR, noaastormevents, nonmemica, opencpu, optmatch, RClone, relMix, reports, srvyr, syuzhet, toxboot
caret, catdata, data.tree, edarf, emil, evtree, fscaret, HSAUR, HSAUR2, mlr, mlrMBO, ModelGood, ModelMap, pdp, pec, rattle, RGraphics, riskRegression, subsemble, SuperLearner, wsrf
betareg, binst, data.tree, HSAUR2, HSAUR3, pdp, RWeka
berryFunctions, cleangeo, copCAR, DSsim, eyetrackingR, FSelectorRcpp, ngspatial, pedometrics, polmineR, uGMAR
doBy, effects, lme4, lmerTest, lsmeans, RcmdrPlugin.NMBU, SensMixed, sjstats
ChemoSpec, cord, dimRed, fractaldim, MetaPCA, ProjectionBasedClustering, zenplots
catdata, confSAM, fscaret, lda, mlr, MWLasso, ordinalNet, peperr, riskRegression
ade4, ade4TkGUI, adegraphics, bmp, ICS, ProjectTemplate, readbitmap, RGraphics, subniche
adapr, Rcpp, RcppArmadillo, RcppBlaze, RcppEigen
AER, broom, clubSandwich, data.table, lfe, meboot, sandwich, spacetime, systemfit, wooldridge, xtable
cusp, eemR, fdapace, fdasrvf, ggRandomForests, nonlinearTseries, rerddap, wavemulcor
colorpatch, flacco, frailtyEM, Hmisc, idbr, incidence, jpndistrict, Luminescence, manipulateWidget, propr, Rilostat, rms, Rnightlights, rwalkr, visdat
AMOEBA, Anthropometry, archdata, convexjlr, DatabionicSwarm, DGCA, diveRsity, EcoIndR, eurostat, FactorsR, geneListPie, hyperSpec, KnowBR, MSG, MultiBD, pdc, popKorn, RGraphics, Rilostat, RMark, rmcorr, rysgran, simba, SpatioTemporal, SPEDInstabR, TrackReconstruction, vhica
agridat, baseline, caret, ChemoSpec, decisionSupport, EEM, fscaret, hyperSpec, LSAmitR, miceadds, mlr, PLSbiplot1, plsRbeta, RStoolbox, simrel
abd, afex, ARPobservation, bayesGDS, cda, cpca, darch, data.table, dendextend, dostats, dtree, eechidna, eeptools, flacco, gcookbook, ggswissmaps, ggthemes, heuristica, hillmakeR, HistData, homeR, hydrostats, ifaTools, installr, jsonlite, Kmisc, knitrBootstrap, latex2exp, LSAmitR, lulcc, mcglm, MGLM, milr, mvnfast, mvtboost, NlsyLinks, nLTT, NNTbiomarker, NPC, ParamHelpers, patternator, pedometrics, plumbr, pomp, ProjectTemplate, psd, ptstem, QFASA, rangemodelR, rattle, rbefdata, rsvd, scdhlm, shadow, soil.spec, sommer, sparseMVN, TAM, textreg, TH.data, TimeProjection, traits, trapezoid, TropFishR, vcdExtra, vkR, wingui
aroma.core, Cairo, Census2016, circlize, DatabionicSwarm, DCG, dtwSat, exams, GeneralizedUmatrix, httr, knitr, largeVis, magick, mbgraphic, MODIStsp, MTA, orloca, pdftools, plotly, ProjectionBasedClustering, RGraphics, RImageJROI, RImagePalette, ripa, RnavGraph, rsvg, rvest, SpaDES.core, splashr, TeachingDemos, tmap, tmaptools, webp
DiceEval, mlt.docreg, subsemble, SuperLearner, tmle.npvi
binom, caschrono, copula, embryogrowth, kza, kzfs, multipol, Rmpfr, spray
geostatsp, ie2misc, kyotil, MotilityLab, ProjectionBasedClustering, robustrank, sensitivity, signal
billboarder, emojifont, ggimage, PP, RcppNumerical, recosystem, scatterpie, showtext, sim1000G, stubthat, SuperLearner
aplore3, arsenal, bst, caret, caretEnsemble, Causata, dtree, eclust, fscaret, kernDeepStackNet, mldr, mlr, prioritylasso, RcmdrPlugin.EZR, riskRegression, sjstats, waffect, WeightedROC
caret, dbstats, fscaret, isopam, parallelDist, qdap, quanteda, sets, themetagenomics
AER, agridat, AICcmodavg, catdata, fence, glmmTMB, glmulti, glmx, hnp, lsmeans, paleofire, sandwich, scanstatistics
afex, apaTables, bootnet, CDM, corrgram, EstimateGroupNetwork, FAiR, GSIF, huxtable, pairwise, PSIMEX, rattle, REdaS, sirt, TAM
broom, countytimezones, d3r, edgarWebR, eechidna, fourierin, jpndistrict, leaflet, leaflet.esri, leaflet.extras, rAltmetric, repurrrsive, rnoaa, roadoi, rtdists, sweep, valr, zeallot
EnvStats, IPSUR, mistat, RcmdrPlugin.IPSUR, RcmdrPlugin.qual
agridat, genotypeR, LinkageMapView, onemap, QTLRel, varbvs
clue, crs, DoseFinding, drtmle, fda, NMOF, popbio, PortfolioAnalytics, STPGA, subsemble, SuperLearner, surveillance
covmat, PerformanceAnalytics, performanceEstimation, PortfolioAnalytics, RGraphics, SharpeR
AER, DAAG, dyn, gamclass, ggplot2, GLDreg, gsubfn, HSAUR3, latticeExtra, lava, mediation, openair, PerformanceAnalytics, picante, psytabs, Rz, simsem, survey
AICcmodavg, BCEA, BCEs0, bridgesampling, ftsa, gap, iBUGS, LakeMetabolizer
AICcmodavg, BCEA, cdfquantreg, dclone, tsbugs
AICcmodavg, bcrm, classify, crmPack, dclone, emdbook, MethComp, nimble, phase1RMD
CompRandFld, fractaldim, geostatsp, IsoriX, rpanel, spatstat
A3, aurelius, BatchExperiments, BiodiversityR, boostr, Boruta, caret, caretEnsemble, ChemometricsWithR, COBRA, crtests, DAAG, DAAGxtras, Daim, discSurv, dismo, doMPI, dtree, dyn, e1071, edarf, emil, ExplainPrediction, foreach, fscaret, FSelectorRcpp, GROAN, GSIF, HSAUR, HSAUR2, HSAUR3, ICEbox, lulcc, mboost, mice, MLPUGS, mlr, mlrMBO, mmpf, ModelGood, OpenML, origami, pander, pdp, pedometrics, performanceEstimation, PivotalR, pmml, purge, rattle, riskRegression, RLT, RStoolbox, simputation, SPreFuGED, strip, subsemble, SuperLearner, tmle.npvi, TunePareto, unbalanced, utiml, VHDClassification, wsrf, yaImpute
CFC, edarf, IPMRF, mlr, ModelGood, pec, pmml, riskRegression, RLT
batchtools, bWGR, climbeR, edarf, GSIF, IPMRF, MFKnockoffs, mlr, NAM, pdp, purge, SuperLearner
caret, dimRed, flacco, fscaret, GeoXp, LICORS, nabor, recipes, spdep
asnipe, autopls, bamlss, BiodiversityR, camtrapR, climatol, cycleRtools, Digiroo2, geosphere, getlandsat, ggfortify, glcm, GSODR, hSDM, imager, insol, magick, maptools, MLID, palr, prettymapr, raincpc, rainfreq, RandomFields, RGraphics, rnaturalearth, rosm, rpostgisLT, SDMTools, sharpshootR, soilwater, solaR, spacetime, SpaDES, spbabel, spdplyr, SPEDInstabR, VoxR
bossMaps, geoknife, MetaLandSim, meteoForecast, raster, smapr, solaR, viridis, zonator
aoos, clusterCrit, dat, doRNG, fourierin, mkin, psd, Rclusterpp, Rcpp, RcppZiggurat, riskRegression, rucrdtw, schumaker, storr
anomalyDetection, Anthropometry, aroma.affymetrix, asymmetry, berryFunctions, billboarder, bodenmiller, bReeze, ChemoSpec, collapsibleTree, compendiumdb, condvis, dendsort, DoE.base, dotCall64, dplR, emil, expm, FRESA.CAD, gapmap, gglogo, ggmuller, ggparallel, ggpubr, ggRandomForests, GMCM, GWmodel, HSAR, httk, idendr0, jtools, kitagawa, longCatEDA, loon, lulcc, mandelbrot, mapmisc, maptools, mboost, McSpatial, metafolio, metricsgraphics, mlearning, mlrMBO, Nippon, nodiv, oaPlots, optrdd, paleofire, Polychrome, qrmtools, quanteda, ragtop, RandomFields, randomForest, rattle, raw, refund, RgoogleMaps, RGraphics, Rlda, Rnightlights, RObsDat, robustbase, RRF, rworldmap, separationplot, shinyWidgets, sinaplot, snpRF, sp, spacetime, SpaDES.core, SpaDES.tools, spdep, sperich, superheat, survSNP, tbart, treespace, vein, xtractomatic
bridgesampling, crmPack, cxxfunplus, devtools, hyperSpec, ie2misc, iemisc, inline, plogr, Rcereal, RcppParallel, sparsepp
CFC, crmPack, DepthProc, factorcpt, FSelectorRcpp, ManifoldOptim, MfUSampler, RcppRoll, themetagenomics, unsystation
berryFunctions, bio3d, boilerpipeR, cleanNLP, CodeDepends, cycleRtools, d3Network, EFDR, exams, fbRanks, fda, GSIF, HydeNet, knitr, markdown, mlr, mosaic, patternplot, plotKML, rDNAse, rdwd, RXKCD, sorvi, sparklyr, trajectories, websearchr, XML
babel, matrixStats, MPAgenomics, PSCBS, R.rsp
auk, csvy, data.world, eechidna, epicontacts, europop, fastR2, fuzzyjoin, getCRUCLdata, googleCloudStorageR, gsheet, httr, IalsaSynthesis, leaflet.esri, leaflet.extras, MazamaSpatialUtils, phonics, pollstR, prophet, rakeR, raw, rio, rmonad, rrr, RSocrata, spup, sweep, tidytext
ckanr, dynBiplotGUI, ezec, heemod, manifestoR, rattle, raw, Rcmdr, RcmdrPlugin.EZR, rotl, tidyxl, unvotes, writexl
data.table, demi, eeptools, GSIF, gsubfn, heplots, heuristica, HistData, htmlTable, IPSUR, MSCMT, nlmeU, pander, plotKML, plspm, popReconstruct, PracTools, ProjectTemplate, rattle, rcqp, rggobi, ripa, rjstat, Rnightlights, StructFDR, Thermimage, tis
alluvial, ARPobservation, bmlm, bodenmiller, bridgedist, causaldrf, codyn, data.table, flowr, frequencyConnectedness, funData, GeneralizedUmatrix, ggalt, ggsci, ggswissmaps, ggthemes, glmmTMB, GSODR, heplots, heuristica, httk, Information, Kmisc, knitrBootstrap, Lahman, lda, logitnorm, ltbayes, metafolio, MGLM, microplot, mlxR, mmpf, MOEADr, mosaicData, MTA, neurobase, nLTT, nullabor, oapackage, pals, ParamHelpers, PDQutils, Perc, physiology, pomp, popEpi, productplots, ProjectionBasedClustering, propr, psd, R6Frame, ragtop, rangemodelR, refund, rfordummies, rgbif, Rlda, rmetasim, robustbase, robustlmm, rpf, rtop, scanstatistics, sdmpredictors, sensitivity, shadow, snpReady, sparseMVN, ss3sim, tableone, tictactoe, tidytext, Tmisc, tourr, treecm, tukeytrend, vcfR, vkR, xtractomatic
downscale, plotKML, rCAT, scrubr, speciesgeocodeR
autopls, bayesTFR, BiodiversityR, btb, cartogram, crawl, dismo, DiversityOccupancy, ecospat, envirem, geoknife, geostatsp, ggsn, graticule, Grid2Polygons, gstat, gwfa, HSAR, ibeemd, intamapInteractive, ipdw, IsoriX, leaflet, leafletR, lgcp, lidR, magick, mapmisc, meteoForecast, mptools, mregions, oce, parlitools, prettymapr, psgp, rangemodelR, raster, rbgm, repijson, reproducible, rgeos, RGraphics, rgrass7, rnaturalearth, rnoaa, rollply, rpostgis, rsatscan, rworldmap, satellite, sbtools, sdm, secr, seg, sf, sharpshootR, soilDB, soil.spec, sos4R, sp, spacetime, SpaDES.core, SpaDES.tools, spatsurv, spcosa, spData, spgrass6, synthACS, trajectories, trip, UScensus2010, usdm, USGSstates2k
DiceKriging, fitdistrplus, icsw, Matching, MSCMT, MuFiCokriging, pnn, SpaDES.core, Synth
adehabitatHR, adehabitatHS, BayesX, btb, dismo, downscale, ENMeval, excursions, FRK, GSODR, gstat, gwfa, HSAR, indicspecies, IsoriX, leaflet, mapmisc, maptools, mregions, npphen, polyCub, rangemodelR, raster, rCAT, rgbif, rmapshaper, rnaturalearth, rtop, sampSurf, secr, secrlinear, sf, sharpshootR, SiMRiv, soilDB, sp, spacetime, SpaDES.tools, spdep, stormwindmodel, surveillance, tbart, trajectories
classifly, idendr0, rattle, RGraphics, ripa, tourrGui
ACDm, AER, archdata, BCA, brewdata, ca, candisc, car, cda, ChemoSpec, colorSpec, CombMSC, compositions, DatabionicSwarm, DeducerExtras, DepthProc, DiceDesign, dimRed, ei, EMbC, emdbook, EMMIXuskew, fdapace, fdasrvf, FisHiCal, GeneralizedUmatrix, genridge, geometry, gifti, granova, grt, heplots, HiDimMaxStable, hyperSpec, ICAOD, igraph, insol, iRF, IsotopeR, knitr, KODAMA, latentnet, lava, lfda, lle, LogConcDEAD, loon, MCMCglmm, misc3d, modQR, mosaic, MSG, mvQuad, netmeta, orientlib, paleomorph, pamm, pavo, pegas, phangorn, phytools, pi0, pitchRx, poliscidata, polywog, propr, ptinpoly, qualpalr, quantreg, raptr, rasterVis, Rcmdr, RcmdrPlugin.BCA, recexcavAAR, RGraphics, rpanel, RQuantLib, RSA, RSurvey, Rvcg, SACOBRA, sampSurf, seewave, sensitivity, simLife, sm, sna, soobench, spcosa, StereoMorph, TeachingDemos, TrackReconstruction, trajectories, treespace, tsDyn, unfoldr, vcdExtra, visreg, VoxR
fbar, icarus, PortfolioAnalytics, relations, ROI.models.netlib
GrammR, matlib, molaR, nat.nblast, spcosa
apt, GFD, gimme, HRM, LifeTables, MANOVA.RM, ProgGUIinR, rankFD, retistruct, TopKLists
bamlss, bcrm, blavaan, covafillr, dcmle, LEAPFrOG, lucid, Luminescence, metamisc, MethComp, nCal, nimble, runjags, wiqid
cleanNLP, CommonJavaJars, commonsMath, condformat, dismo, ecospat, JavaGD, mopa, partykit, polmineR, rCMA, rscala, SDMPlay, sergeant, stream, svMisc, utiml, zooimage
GSIF, installr, mlr, plotKML, sorvi, trajectories
BIOM.utils, CodeDepends, exams, fbRanks, leaflet, matR, MGRASTer, skeleSim
bigGP, dclone, ergm.graphlets, geoCount, latentnet, snow
DATforDCEMRI, fda, geometry, hyperSpec, poweRlaw, SLOPE
HSAUR, HSAUR2, HSAUR3, MetaAnalyser, mvmeta
copula, expm, gmp, IMIFA, POUMM, QuACN, selectiveInference, stabledist
Chaos01, ConjointChecks, ergm, IndependenceTests, irace, npsf, OpenMx, P2C2M, parallelMap, PCIT, pls, plsVarSel, redist, simsalapar, snow, snowfall, snowFT
bbmle, catdata, dosresmeta, gap, goftte, Hmisc, languageR, ModelGood, ordinalNet, pander, perturb, rankhazard, sure, survAUC, tangram
dbplyr, dplyr, etl, ProjectTemplate, quantmod, sqldf, toxboot, TSdata, TSsql, twitteR, valr, WhopGenome
cellWise, ChemoSpec, depth, DepthProc, ICS, mlr, mrfDepth, multcomp, PerformanceAnalytics, PLSbiplot1, PortfolioAnalytics, robcor, rsae, simsalapar, timeSeries
AER, bnlearn, dismo, ggfortify, LEANR, mlr, rattle, recommenderlab, sand, SuperLearner, unbalanced, WeightedROC
biglm, BiodiversityR, climatol, convey, ETLUtils, icd, mitools, monitoR, ProjectTemplate, rattle, RcmdrPlugin.IPSUR, RcmdrPlugin.temis, REDCapR, RODM, rpart.utils, soilDB, sos, survey, TSdata
analogsea, aRxiv, ashr, autovarCore, BAS, BayesianTools, bikedata, binomen, bold, broman, bunchr, camsRad, ccafs, charlatan, chromer, covmat, crminer, datadr, DescribeDisplay, devtools, df2json, discreteRV, dotCall64, DrImpute, dynr, ecd, elastic, enigma, etseed, eurostat, FedData, flippant, gapfill, geometa, geosapi, geozoo, getCRUCLdata, getlandsat, GGally, ggenealogy, gistr, gitlabr, googleAuthR, gqlr, Grid2Polygons, GSODR, h5, hoardr, icd, icd9, ifaTools, inlmisc, intergraph, isdparser, jaod, jiebaR, knitrBootstrap, lawn, ldhmm, learnrbook, lineup, LinkedMatrix, mgarchBEKK, micompr, mizer, mtconnectR, multipanelfigure, natserv, nat.utils, nima, nlmeU, nneo, nscancor, nsprcomp, oai, openadds, OpenMx, optmatch, originr, osmdata, osmplotr, paleobioDB, pangaear, pcIRT, photobiology, pleiades, pnn, popEpi, PP, protoclass, pwrRasch, qtlcharts, Quandl, questionr, R4CouchDB, ragtop, randgeo, rappdirs, rAvis, rbgm, rbhl, rbison, rbokeh, rbundler, rClinicalCodes, rcoreoa, rcrossref, rdpla, recexcavAAR, refimpact, rerddap, rex, rgbif, rif, Rilostat, ritis, RItools, rMouse, rnoaa, roadoi, rorcid, rpcdsearch, rpf, rredlist, rsdmx, rsnps, RSocrata, rstanarm, rtimes, rvertnet, rYoutheria, scholar, sdmvspecies, sinew, sofa, solr, solrium, sotkanet, spdynmod, spocc, taxa, taxize, taxizedb, tcpl, tcR, TimeProjection, traits, trelliscope, urlshorteneR, vdiffr, vortexR, webmockr, wikitaxa, worrms, wrswoR, WufooR, xoi
arsenal, aslib, aurelius, BatchExperiments, batchtools, BiodiversityR, CALIBERrfimpute, caretEnsemble, catdata, caTools, ChemometricsWithR, classifly, crtests, DAAG, Daim, doParallel, doSNOW, DynTxRegime, e1071, emil, evtree, flacco, FRESA.CAD, fscaret, FSelector, FSelectorRcpp, ggdendro, ggplot2, GSIF, HandTill2001, HSAUR, HSAUR2, HSAUR3, klaR, languageR, lulcc, MatchIt, mboost, medflex, metaheur, mlr, mlrMBO, ModelGood, naniar, OpenML, partools, partykit, pdp, pec, PivotalR, plotmo, pmml, preprocomb, purge, R2HTML, rattle, recipes, riskRegression, ROSE, subsemble, SuperLearner, UBL, utiml, visNetwork
aVirtualTwins, CORElearn, LTRCtrees, naniar, plotmo
dbplyr, dplyr, etl, PivotalR, ProjectTemplate, replyr, sf, spacetime, sqldf, TSdata
DBI, document, googledrive, googlesheets, readxl, repurrrsive
acebayes, AEDForecasting, AFLPsim, babar, babel, baitmet, bayesGDS, BayLum, biglasso, bridgesampling, brms, brotli, brr, bst, bujar, causaleffect, chngpt, comf, Compind, CryptRndTest, deBInfer, dggridR, DiffusionRgqd, DiffusionRimp, DiffusionRjgqd, doFuture, dynamichazard, easyVerification, ecp, EdSurvey, emdi, enaR, EnsemblePCReg, erah, flacco, FLSSS, future, future.BatchJobs, future.batchtools, FuzzyLP, FuzzyStatProb, GameTheory, gdm, generalCorr, GHap, gitlabr, haplo.stats, httk, IsoriX, jsonlite, kdecopula, ldhmm, lexRankr, listenv, lmvar, lqmm, madness, manifestoR, marmap, MatchIt, matrixpls, matrixStats, MDplot, metafor, metagear, metaplus, metaSEM, mets, MIAmaxent, micromapST, microPop, mpath, MRH, MVisAGe, MXM, NUCOMBog, opencpu, OpenML, PAFit, PakPC2017, pleio, plsRglm, PrevMap, profmem, PSCBS, Qtools, randomLCA, randomUniformForest, RAppArmor, rbi, rCAT, rccmisc, rcss, R.devices, revengc, Rlda, RLumModel, robumeta, rSARP, SemiCompRisks, SetRank, sgd, sourceR, spam, SpatialEpiApp, spmoran, SRCS, ssfa, stagePop, STPGA, tailDepFun, timma, tsdisagg2, WACS, WCE, webglobe, Wrapped
DoseFinding, LambertW, markovchain, mirt, regsem
biglm, caroline, chunked, DBI, dbplyr, dplyr, etl, ETLUtils, freqweights, macleish, MonetDBLite, mstherm, nutshell, nutshell.bbdb, oai, oce, pitchRx, ProjectTemplate, quantmod, rgrass7, RObsDat, scrime, sf, srvyr, storr, stream, survey, taRifx, TSdata, TSsql, twitteR, vegdata, vtreat
bayesplot, blavaan, bridgesampling, broom, ggmcmc, loo, lsmeans, nimble, rstantools
bayesplot, broom, ggeffects, loo, lsmeans, merTools, RBesT, rstantools, shinystan, sjstats
blogdown, bookdown, clipr, colourpicker, covr, datadogr, docstring, ggExtra, listviewer, Luminescence, reprex, rgl, rhandsontable, rstan, shinyjs, testit, tinsel, vdiffr, xaringan
aop, aucm, bbmle, cccp, ChainLadder, chngpt, classyfire, cleanr, climdex.pcic, ClimDown, clusterCrit, cmaes, CodeDepends, CompGLM, DatABEL, document, doRNG, doSNOW, emoa, fAssets, fastdigest, fBasics, fBonds, fCopulae, FeatureHashing, fExoticOptions, fExtremes, fGarch, fImport, fingerprint, fMultivar, fNonlinear, fOptions, fRegression, fTrading, futile.matrix, gbm, gdata, glarma, gMCP, GRANBase, HistogramTools, hypergea, iterators, krm, kyotil, lambda.r, lhs, lisp, logitnorm, matrixpls, mcr, mdw, MetaIntegrator, Metrics, mutoss, NanoStringNorm, nanotime, nCal, ncdf4.helpers, NMF, NMOF, NormalLaplace, nplr, orgutils, PCICt, pdmod, pkgmaker, prc, protViz, qmrparser, Rblpapi, rcdk, Rclusterpp, Rcpp, RcppAnnoy, RcppArmadillo, RcppBlaze, RcppClassic, RcppClassicExamples, RcppEigen, RcppExamples, RcppGSL, RcppHoney, RcppOctave, RcppParallel, RcppRedis, RecordLinkage, restfulr, RMongo, rngtools, RobAStBase, robustrank, RProtoBuf, RQuantLib, rredis, rsolr, rstan, rstpm2, simcausal, simTool, sp23design, spatialprobit, spcosa, sprint, sptm, stabledist, stremr, tawny, tawny.types, timeDate, timeSeries, TKF, tmlenet, TTR, WeightedCluster, XLConnect, Xmisc, xts
acnr, babel, ChemoSpec, ForecastFramework, hashFunction, listenv, oce
eurostat, fuzzyjoin, htmltidy, iemiscdata, jpndistrict, prodigenr, rccmisc, rex, rscopus, sharpshootR, soilDB, unpivotr, WikidataQueryServiceR
farff, fscaret, FSelectorRcpp, mlr, OpenML, partykit, utiml
bayesTFR, graticule, loon, paleofire, ropenaq, rworldxtra, scrubr
ANOM, car, dyn, dynlm, geex, grf, HSAUR2, HSAUR3, jtools, lmtest, margins, memisc, mlt.docreg, modmarg, partykit, pscl, Rchoice, SharpeR, tukeytrend
bayesplot, cda, Census2016, chron, colormap, countyfloods, dimRed, disclapmix, eechidna, fivethirtyeight, GGally, ggdendro, grattan, gsDesign, hhh4contacts, HistData, httk, igraph, imager, incidence, JWileymisc, LBSPR, likeLTD, loon, lspline, NlsyLinks, nzelect, oddsratio, pwr, R6, raw, rbgm, RcmdrPlugin.MA, rdpla, Rdtq, RImagePalette, rsvd, rtide, rtimes, SACOBRA, SciencesPo, simstudy, soil.spec, solarius, sparseHessianFD, sparseMVN, surveillance, sweep, tidytext, timetk, tis, usmap, vcfR, viridis, Wats, zoo
AER, BNPMIXcluster, brewdata, CompRandFld, copula, cordillera, deSolve, diffEq, dimRed, ecolMod, funcy, gcKrig, geoR, GHQp, HDMD, HSAUR, HSAUR2, HSAUR3, hydroPSO, IPSUR, klaR, LPCM, matR, mco, MOEADr, mopsocd, MotilityLab, MVA, ndtv, orientlib, poliscidata, RGraphics, RODM, RSNNS, sandwich, TrackReconstruction, tsDyn, tseriesChaos
aspect, FAiR, MVA, psych, Rcmdr, semPLS, systemfit
biomartr, cubfits, phangorn, rnaseqWrapper, SimRAD, TKF, vhica
ChemoSpec, corrplot, dendextend, dendsort, disclapmix, flexclust, ockc, SFS
crawl, geojsonio, leaflet, osmdata, plotly, rmapshaper, spbabel, spData, tabularaster, USAboundaries
ChemometricsWithR, copula, corrgram, expm, longmemo, qrmtools, Rmpfr, robcor, robustbase, stabledist
ahp, AMModels, archivist, backpipe, BayesNetBP, beanz, BIGL, bigQueryR, billboarder, blogdown, bookdown, bsplus, canvasXpress, colorspace, compareGroups, condformat, condvis, covr, credsubs, cronR, d3heatmap, d3Tree, diffr, DT, dynamichazard, eemR, embryogrowth, epicontacts, EpiModel, evaluator, fanplot, flacco, flora, formatR, formattable, GDINA, geneSLOPE, ggiraph, gitlabr, googleAnalyticsR, googleVis, HARtools, HelpersMG, highlightHTML, idem, ImportExport, koRpus, LDAvis, leaflet, leaflet.minicharts, likert, metricsgraphics, mirt, mlr, mlxR, nbc4va, pdfsearch, phenology, pipe.design, pitchRx, PivotalR, pivottabler, plotly, polmineR, PopED, powerlmm, qrage, radarchart, rAmCharts, rangeMapper, RDML, reactR, recmap, repo, reprex, RGA, rhandsontable, Rilostat, rivr, rmarkdown, Rnightlights, RQuantLib, rtimicropem, rwalkr, RxODE, sadists, scdhlm, SDEFSR, sdm, searchConsoleR, shotGroups, SimDesign, simglm, slickR, sparkline, SqlRender, subscreen, synthACS, tabplot, taskscheduleR, texPreview, tigerstats, timeline, tmaptools, VineCopula, visNetwork, VizOR, webshot, weco, weightr, wiqid
AMModels, compareGroups, ImportExport, LBSPR, sdm, weightr
GDINA, powerlmm, rAmCharts, Rnightlights, shinyWidgets, SqlRender
ahp, colorspace, compareGroups, kgschart, RDML, reprex, Sofi, tigerstats, tmaptools
bayesplot, ctsem, rstan, rstantools, survHE
ahp, beanz, dpcR, idem, ImportExport, mirtCAT, RDML, weco
ChemometricsWithR, ChemoSpec, GGIR, kitagawa, seewave
caroline, npsm, rpanel, sirt, spatstat, tsDyn
BLCOP, DepthProc, fCopulae, mi, qrmtools, ssym
asnipe, blockmodeling, ChemoSpec, equateIRT, ergm, GGally, haplotypes, HiveR, MSG, network, pkggraph, rDNA, sand, tsna
batchtools, ConjointChecks, IndependenceTests, lga, STAR
koRpus, movMF, qdap, rattle, RcmdrPlugin.temis, stm, textreg, tm, topicmodels
COBRA, CoxBoost, GAMBoost, gcKrig, geoCount, GSIF, gyriq, HiDimMaxStable, minPtest, mlegp, mlgt, MPAgenomics, MPTinR, OpenMx, plotKML, regsem, rgp, TunePareto
ade4, agridat, bayesTFR, BiodiversityR, broom, climatol, concaveman, ctmm, DatabionicSwarm, eechidna, EnvStats, gamclass, gcKrig, getCRUCLdata, ggfortify, Guerry, HistData, HSAUR3, hSDM, hyperSpec, indicspecies, installr, interp, itsadug, jsonlite, lctools, leafletR, loon, maps, MBA, mdsr, MLID, mosaic, npsp, osmar, paleofire, pedometrics, playwith, plotfunctions, prettymapr, R2BayesX, rangemodelR, rase, rasterList, RcmdrPlugin.qual, remote, rgbif, RgoogleMaps, RGraphics, rpanel, rsatscan, sbtools, scanstatistics, scrubr, SDMTools, sf, smerc, solaR, SpatialAcc, spData, spup, stormwindmodel, synthACS, TSP, VoxR
CompRandFld, dotCall64, gapfill, gear, gptk, RandomFields, spam64, spdep
car, CollocInfer, e1071, LiblineaR, LiblineaR.ACF, R.matlab, RSSL, sna, spam, sprint
adehabitat, autoimage, bamlss, expp, GSIF, ipdw, maptools, McSpatial, plotKML, soil.spec, spatstat.data, spatstat.utils
ade4, adegraphics, bamlss, BayesX, brms, constrainedKriging, DatabionicSwarm, diseasemapping, FRK, gamlss.spatial, glmmBUGS, Guerry, McSpatial, prabclus, ProjectionBasedClustering, R2BayesX, rangemodelR, seg, sharpshootR, spData, spgwr, spmoran, starma, subniche, surveillance, xtable
ade4, adegenet, adegraphics, BCEA, BiodiversityR, EcoIndR, FRK, MixSIAR, plgp, spatialkernel, subniche, surveillance
assignPOP, caRpools, CorporaCoCo, genie, iemiscdata, qdap, rbi, readr, rebus.base, rebus.unicode, RInno, rvest, stylo, swirl, taxlist, textmining, tm.plugin.alceste
arsenal, blogdown, BradleyTerryScalable, ClimClass, dtree, eeptools, fivethirtyeight, fontMPlus, frequencyConnectedness, ggenealogy, ggmap, GSIF, heemod, leaflet.esri, lemon, MARSS, miscset, optparse, plotROC, ProjectTemplate, ragtop, rex, rfordummies, rmonad, simPop, SoundexBR, sweep, taRifx, text2vec, tikzDevice, timetk, unpivotr, usmap, valaddin, vkR, wingui, wsrf
AER, bcp, betareg, dynlm, ggfortify, glogis, lmtest, meboot, partykit, psychotree, sandwich, zoo
emdbook, enrichwith, ExtDist, flexmix, mediation
car, grattan, inca, inctools, ipw, jtools, logmult, MonetDBLite, PracTools, Qtools, RDS, SDaA, sjstats
agridat, aplore3, arsenal, ARTool, ascii, BB, bife, bnnSurvival, boot, bpcp, broom, BSquare, bujar, CALIBERrfimpute, car, catspec, choplump, climbeR, clinfun, confSAM, coreSim, DAAG, dawai, desctable, discSurv, dlnm, dnet, doBy, DySeq, emil, epade, epifit, exactRankTests, FastKM, flexmix, forestmodel, FRESA.CAD, gamair, gamboostLSS, gamlss.inf, gap, genSurv, GGally, ggfortify, glmnet, glmulti, gof, Greg, grImport, grpreg, heemod, highcharter, homomorpheR, HSAUR, HSAUR2, HSAUR3, HydeNet, ISwR, itree, kyotil, lmtest, LogrankA, lsmeans, lss, MASS, maxstat, mc2d, mediation, metafor, MetaQC, mgcv, mi, mistat, mixor, mlt.docreg, MuMIn, ncvreg, netdiffuseR, npsm, nutshell, opera, optband, outreg, pander, pensim, ph2bye, ph2mult, pmml, PResiduals, purge, quantreg, qwraps2, R2HTML, randomForestSRC, ranger, rattle, reporttools, RLT, rpart, RVAideMemoire, sandwich, simstudy, simsurv, SMIR, srvyr, subscreen, support.BWS, support.BWS2, support.CEs, survtmle, SweaveListingUtils, tableone, texreg, timeROC, truncreg, Umpire, visreg, wally, xtable, ztable
DeLorean, ggExtra, ggplot2, mlr, rsvg, svgPanZoom, viridis
distr, gsubfn, likeLTD, logging, sqldf, svMisc
binomen, mapr, rbison, rnoaa, spocc, taxa
HH, httk, IPSUR, metafolio, RGraphics, SPEDInstabR, tourr, tourrGui
animation, blogdown, bookdown, formatR, highr, knitr, leaflet, NlsyLinks, nLTT, xaringan
CDNmoney, tframePlus, TSdata, TSdbi, TSfame, TSmisc, TSMySQL, TSodbc, TSPostgreSQL, TSsdmx, TSsql, TSSQLite
bujar, coin, Daim, flexsurv, ggiraphExtra, HSAUR, HSAUR2, HSAUR3, ipred, maxstat, mboost, mlr, mlt, mlt.docreg, partDSA, party, partykit, stabs
batchtools, checkmate, datacheckr, dataCompareR, datapasta, dotwhisker, drake, FSelectorRcpp, geojson, GSODR, knitr, noaastormevents, odbc, rmarkdown, sf, snakecase, splashr, survtmle, units
afex, ARTool, baseballDBR, BSDA, causaldrf, crawl, decoder, dimRed, dlstats, edgarWebR, eemR, eesim, europop, eyelinker, fastR2, forwards, fourierin, groupdata2, GSODR, gutenbergr, htmltab, idbr, JacobiEigen, jpndistrict, kntnr, Lahman, lplyr, MANOVA.RM, metaplot, nzelect, officer, openEBGM, padr, powerlmm, qicharts2, qualvar, R6Frame, radarchart, raw, Rilostat, rmonad, rODE, rollply, rtdists, sf, simmer, sparseMVN, sunburstR, survutils, tictactoe, tidytext, tilegramsR, tmap, unjoin, unvotes, valr, wrswoR, wrswoR.benchmark
alphavantager, blscrapeR, cvequality, fbar, fivethirtyeight, furniture, ggconf, ggjoy, ggridges, ggthemes, passport, pinnacle.data, pipeliner, pkggraph, pollstR, RBesT, sjstats, statesRcontiguous, sweep, timetk, Zelig
dplR, dtwSat, gMOIP, knitr, mkin, RankingProject, wrswoR
caschrono, FinancialInstrument, ggfortify, gmm, Quandl, quantmod, SharpeR, TSmisc, TSMySQL, xts, zoo
tframePlus, TSdbi, TSmisc, TSsql, xts, zoo
adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, aplpack, cghRA, fmri, LogConcDEAD, misc3d, mritc, RandomFields, RcmdrPlugin.RiskDemo, RcmdrPlugin.SM, relax, Rgb, ripa, rpanel, sm, SpaDES.core, spatstat, sudoku, TeachingDemos
iemisctext, koRpus, lsa, movMF, PRISMA, quanteda, rattle, stm, tau, tidytext, tmcn, toaster, vkR, wordcloud, wordspace
LDAvis, PivotalR, quanteda, tidytext, widyr
COBRA, dtree, ggdendro, optpart, ROSE, TunePareto
adegenet, geometry, hyperSpec, latticeExtra, quantreg
AER, copula, dyn, ggfortify, mFilter, mistat, pander, portes, RTDE, StepwiseTest, strucchange, TSdata, TSdbi, TSfame, TSMySQL, TSodbc, TSPostgreSQL, TSsql, TSSQLite, xts, zoo
leaflet.esri, leaflet.extras, RDML, reactR, shinyjs
abd, agridat, archetypes, ca, coin, colorspace, fastR, fastR2, glmertree, HSAUR, HSAUR2, HSAUR3, IPSUR, Lahman, mosaic, movMF, party, partykit, pscl, RcmdrPlugin.NMBU, RcmdrPlugin.pointG, RcmdrPlugin.qual, REdaS, RGraphics, Rz, tableplot, UsingR, xgboost
atlantistools, ggExtra, ggjoy, ggridges, ggstance, naniar, viridis, visdat
adespatial, ALA4R, aptg, bcp, betapart, codep, dimRed, EcoIndR, ecolottery, ecospace, eHOF, enveomics.R, GCalignR, idar, KnowBR, loe, mefa, permute, phylotools, primer, raptr, RnavGraph, sads, spaa, taxize, themetagenomics, vegdata, vegtable, WeightedCluster, yaImpute
easyVerification, FRK, rattle, RODM, simpleNeural
catdata, copula, cubfits, DeLorean, discSurv, ExtDist, hnp, isdals, kyotil, medflex, mediation, mlt.docreg, mnlogit, modeest, ordinalNet, partDSA, ppcc, robustrank, skellam, Sofi, sure, vcdExtra, VGAMdata
beanplot, denstrip, hydroPSO, sand, vipor
autoimage, bigstatsr, cowplot, eclust, getCRUCLdata, ggjoy, ggridges, grattan, httk, platetools, powerlmm, radiomics, ropenaq, spant, spbabel, stacomiR, stormwindmodel, sugrrants, themetagenomics
bigrquery, cranlike, debugme, desc, dplyr, ggExtra, harvestr, IRdisplay, keyring, miniCRAN, pathological, processx, rprojroot, secret, surveydata, testthat, tibble, zip
fivethirtyeight, HSAUR2, HSAUR3, PGRdup, stm, tidytext
bayesDem, bayesLife, bayesPop, bayesTFR, wppExplorer
FeatureHashing, GSIF, lime, mlr, pdp, pmml, rattle, rBayesianOptimization, SuperLearner, utiml
Deducer, heemod, JGR, rfordummies, xlsimple
compareGroups, condformat, diveRsity, ecoseries, geoSpectral, OpenRepGrid, polmineR, ProjectTemplate, repmis
arules, bio3d, BoSSA, bReeze, ctv, dcemriS4, dismo, ecospat, fbRanks, FinancialInstrument, frbs, gemtc, GSIF, HelpersMG, htmlTable, icd9, installr, io, knitr, kulife, logging, mcr, mlr, Mobilize, mrgsolve, nat, Ohmage, oro.nifti, pacman, partykit, PGRdup, plumber, quantmod, R2SWF, raw, RCurl, rdwd, Renext, rgeos, RGraphics, RObsDat, rplos, RSurvey, RUnit, selectr, semPLS, SubpathwayLNCE, svUnit, TCGAretriever, tidytext, tm, tm.plugin.dc, topicmodels, websearchr
ameco, assertive.types, ckanr, covr, DBI, flextable, httr, icd, OpenML, pollstR, polmineR, prodigenr, rccmisc, repurrrsive, rio, rscopus, sbtools, selectr, sharpshootR, svglite, tuber, tubern, units, xmlparsedata
afex, arsenal, ascii, attribrisk, AutoModel, BayesFactor, bestglm, blockTools, boostr, CALIBERrfimpute, caper, caschrono, chipPCR, ClassDiscovery, CNVassoc, coin, dpcR, drLumi, e1071, EGRET, EloChoice, evtree, ExtDist, fbRanks, geex, GenAlgo, geoknife, gets, hamlet, hdm, HiveR, htmlTable, icarus, icd9, ifaTools, itsadug, JoSAE, knitrBootstrap, kyotil, LSAmitR, MARSS, matlib, mcmc, micEconCES, microplot, mixedMem, MPSEM, multcomp, nFactors, nimble, NlsyLinks, NMF, NPC, optmatch, ordinal, pedometrics, phangorn, PMCMR, protViz, qtutils, quanteda, RankAggreg, rbamtools, rcdk, robustbase, rodeo, rscala, RSiena, rtf, rtimicropem, sadists, SBSA, SeleMix, SeqFeatR, SharpeR, SII, soiltexture, sos4R, sparseHessianFD, sparseMVN, spdep, sqlutils, StMoMo, TailRank, taRifx, Tcomp, texPreview, textreg, TraMineR, TriMatch, tukeytrend, waterData
BETS, crawl, dataseries, data.table, DepthProc, FatTailsR, ggfortify, gstat, hydroPSO, manipulateWidget, nanotime, parma, Rblpapi, SharpeR, sos4R, surveillance, tframePlus, timeSeries, tolBasis, trajectories, TSdata, TSmisc, ustyc, zoo
data.tree, io, LaF, rio, tractor.base, vdiffr
Amelia, hot.deck, mice, miceadds, texreg
atsd, bamlss, broom, copula, data.table, ETLUtils, FatTailsR, fda, frequencyConnectedness, funData, ggfortify, GGIR, glarma, gsubfn, h5, latticeExtra, lava, ltxsparklines, meboot, mondate, pander, playwith, pscl, quantreg, Rblpapi, RcppRoll, rdefra, tframePlus, tolBasis, TScompare, TSdata, TSdbi, TSfame, TSMySQL, TSodbc, TSPostgreSQL, TSSQLite, UsingR, XLConnect, xtable, zenplots
collapsibleTree, htmltools, kimisc, networkD3, patchSynctex, svgPanZoom, threejs
infutil, pbdDEMO, prediction, stargazer, texreg
coop, OptimalDesign, Rcplex, Rcsdp, skmeans, slam
memisc, MuMIn, prediction, stargazer, texreg
collapsibleTree, dygraphs, htmlwidgets, JMbayes, networkD3, rbokeh, rpivotTable, scatterD3, threejs, wordcloud2
ggplot2, ggtern, GJRM, macleish, Rgnuplot