'Pillai.R' 'Rcpp_exceptions.R' 'map-class.R'
'addExtraMarkerFromRawCall.R' 'addExtraMarkers.R'
'canSkipValidity.R' 'pedigree-class.R' 'hetData-class.R'
'geneticData-class.R' 'lg-class.R' 'rawSymmetricMatrix.R'
'rf-class.R' 'mpcross-class.R' 'additionOperators.R'
'as.mpInterval.R' 'assignFounderPattern.R'
'assignFounderPatternPrototype.R' 'backcrossPedigree.R'
'biparentalDominant.R' 'callFromMap.R' 'changeMarkerPosition.R'
'combineGenotypes.R' 'combineKeepRF.R'
'compressedProbabilities.R' 'computeAllEpistaticChiSquared.R'
'computeGenotypeProbabilities.R' 'createSNPTemplate.R'
'detailedPedigree-class.R' 'eightWayPedigreeImproperFunnels.R'
'eightWayPedigreeRandomFunnels.R'
'eightWayPedigreeSingleFunnel.R' 'estimateMap.R'
'estimateMapFromImputation.R' 'estimateRF.R'
'estimateRFSingleDesign.R' 'expand.R' 'expandedProbabilities.R'
'exportMapToPretzl.R' 'extraImputationPoints.R' 'f2Pedigree.R'
'finals.R' 'fixedNumberOfFounderAlleles.R' 'formGroups.R'
'founders.R' 'fourParentPedigreeRandomFunnels.R'
'fourParentPedigreeSingleFunnel.R' 'fullHetData.R'
'generateGridPositions.R' 'generateIntervalMidPoints.R'
'getAllFunnels.R' 'getChromosomes.R'
'getIntercrossingAndSelfingGenerations.R' 'getPositions.R'
'hetData.R' 'identC.R' 'imputationGenerics.R' 'impute.R'
'imputeFounders.R' 'jitterMap.R' 'lineNames.R'
'listCodingErrors.R' 'mapFunctions.R' 'markers.R' 'mpcross.R'
'multiparentSNP.R' 'multiparentSNPPrototype.R' 'nFounders.R'
'nLines.R' 'nMarkers.R' 'num_threads.R' 'orderCross.R'
'pedigree.R' 'pedigreeGraph-class.R' 'pedigreeGraph.R'
'pedigreeToGraph.R' 'plot.R' 'plotMosaic.R'
'plotProbabilities.R' 'print.R' 'probabilityData.R'
'purdyToPedigree.R' 'redact.R' 'removeHets.R'
'reorderPedigree.R' 'reverseChromosomes.R' 'rilPedigree.R'
'roxygen.R' 'selfing.R' 'show.R' 'simulateMPCross.R'
'simulatePhenotypes.R' 'singleLocusProbabilities.R'
'sixteenParentPedigreeRandomFunnels.R' 'stripPedigree.R'
'subset.R' 'testDistortion.R' 'toMpMap.R'
'transposeProbabilities.R' 'twoParentPedigree.R' 'validation.R'