A convenience wrapper for the Wikipedia page access statistics API 
  binding the 'pageviews' package and using an additional self composed data 
  source thus covering a time span from very late 2007 up to the present for 
  daily page views.
A wrapper for the MediaWiki API, aimed particularly at the
    Wikimedia 'production' wikis, such as Wikipedia. It can be used to retrieve
    page text, information about users or the history of pages, and elements of
    the category tree.
'Taxonomic' information from 'Wikipedia', 'Wikicommons',
    'Wikispecies', and 'Wikidata'. Functions included for getting
    taxonomic information from each of the sources just listed, as
    well performing taxonomic search.
This package provides functions to perform fast variable
        selection based on the Wilcoxon rank sum test in the
        cross-validation or Monte-Carlo cross-validation settings, for
        use in microarray-based binary classification.
An implementation of the 1-Sample Wilcoxon Sign rank test for medians. 
              It includes 2 functions, W_stat(), which computes the 
              exact probabilities of the Wilcoxon Sign Rank Test Statistic, W.
              The second function, Wilcox.m.test() allows the user to conduct the
              1-Sample Wilcoxon Sign Rank hypothesis test for medians, this also 
              allows the user to conduct the hypothesis test for the normal approximation, 
              based on the techniques of Bickel and Doksum (1973, ISBN:013850363X).
Dynamic interaction refers to spatial-temporal associations
    in the movements of two (or more) animals. This package provides tools for
    calculating a suite of indices used for quantifying dynamic interaction with
    wildlife telemetry data. For more information on each of the methods employed
    see the references within. The package (as of version >= 0.3) also has new tools for
    automating contact analysis in large tracking datasets. The package draws 
    heavily on the classes and methods developed in the 'adehabitat' packages.
Provides insight into how the best hand for a poker game changes based on the game dealt, players who stay in until the showdown and wildcards added to the base game.  At this time the package does not support player tactics, so draw poker variants are not included.
Fetches data from three disparate data sources and allows user to perform analyses on them. It offers two core components: 1. A robust data retrieval and preparation infrastructure for wildfire, climate, and air quality index data and 2. A simple, informative, and interactive visualizations of the aforementioned datasets for California counties from 2011 through 2015. The sources of data are: wildfire data from Kaggle <https://www.kaggle.com/rtatman/188-million-us-wildfires>, climate data from the National Oceanic and Atmospheric Administration  <https://www.ncdc.noaa.gov/cdo-web/token>, and air quality data from the Environmental Protection Agency <https://aqs.epa.gov/aqsweb/documents/data_api.html>.
Tool-set of modules for creating web-based applications that use plot based strategies to visualize and analyze multi-omics data.
    This package utilizes the 'shiny' and 'plotly' frameworks to provide a user friendly dashboard for interactive plotting.
Obtain the native stack trace and fuse it with R's
    stack trace for easier debugging of R packages with native code.
Post-construction fatality monitoring studies at wind facilities are based on data from searches for bird and bat carcasses in plots beneath turbines. Bird and bat carcasses can fall outside of the search plot. Bird and bat carcasses from wind turbines often fall outside of the searched area. To compensate, area correction (AC) estimations are calculated to estimate the percentage of fatalities that fall within the searched area versus those that fall outside of it. This package provides two likelihood based methods and one physics based method (Hull and Muir (2010) <doi:10.1080/14486563.2010.9725253>, Huso and Dalthorp (2014) <doi:10.1002/jwmg.663>) to estimate the carcass fall distribution. There are also functions for calculating the proportion of area searched within one unit annuli, log logistic distribution functions, and truncated distribution functions.
Provides a tool to fit and compare the wind turbine power curves 
    with successful curve fitting techniques. Facilitates to examine and compare 
    the performance of a user-defined power curve fitting techniques. 
    Also, provide features to generate power curve discrete points from a graphical 
    power curves. Data on the power curves of the wind turbine from major 
    manufacturers are provided.
Analysing convergent evolution using the Wheatsheaf index, described in Arbuckle et al. (2014) <doi: 10.1111/2041-210X.12195>, and some other random but perhaps useful functions.
Collect multichannel marketing data from sources such as Google analytics, Facebook Ads, and many others using the 'Windsor.ai' API <https://www.windsor.ai/api-fields/>.
Obtain information on peak flow data from the National River Flow Archive (NRFA) in the United Kingdom, either from the Peak Flow Dataset files <https://nrfa.ceh.ac.uk/peak-flow-dataset> once these have been downloaded to the user's computer or using the NRFA's API. These files are in a format suitable for direct use in the 'WINFAP' software, hence the name of the package.
Helps for interfacing with the operating system
    particularly for Windows.
Calculate the win ratio for prioritized outcomes and the 95% confidence interval based on Bebu and Lachin (2016) <doi:10.1093/biostatistics/kxv032>. Three type of outcomes can be analyzed: survival "failure-time" events, repeated survival "failure-time" events and continuous or ordinal "non-failure time" events that are captured at specific time-points in the study.
Fits a model to data separately for each treatment group and then calculates the win-Ratio as a function of follow-up time.
Calculate the win statistics (win ratio, net benefit and win odds) for prioritized multiple endpoints, plot the win statistics and win proportions over study time if at least one time-to-event endpoint is analyzed, and simulate datasets with dependent endpoints. The package can handle any type of outcomes (continuous, ordinal, binary, time-to-event) and allow users to perform stratified analysis and inverse probability of censoring weighting (IPCW) analysis.
Provides simple, fast functions for maximum likelihood and Bayesian estimates of wildlife population parameters, suitable for use with simulated data or bootstraps. Early versions were indeed quick and dirty, but optional error-checking routines and meaningful error messages have been added. Includes single and multi-season occupancy, closed capture population estimation, survival, species richness and distance measures.
In the course of a genome-wide association study, the situation often arises that some phenotypes are known with greater precision than others.
    It could be that some individuals are known to harbor more micro-environmental variance than others.
    In the case of inbred strains of model organisms, it could be the case that more organisms were observed from some strains than others, so the strains with more organisms have better-estimated means.
    Package 'wISAM' handles this situation by allowing for weighting of each observation according to residual variance.
    Specifically, the 'weight' parameter to the function conduct_scan() takes the precision of each observation (one over the variance).
A Shiny application for learning Bayesian Decision Networks from data. This package can be used for probabilistic reasoning (in the observational setting), causal inference (in the presence of interventions) and learning policy decisions (in Decision Network setting). Functionalities include end-to-end implementations for data-preprocessing, structure-learning, exact inference, approximate inference, extending the learned structure to Decision Networks and policy optimization using statistically rigorous methods such as bootstraps, resampling, ensemble-averaging and cross-validation. In addition to Bayesian Decision Networks, it also features correlation networks, community-detection, graph visualizations, graph exports and web-deployment of the learned models as Shiny dashboards.
A set of functions to run code 'with' safely and
    temporarily modified global state. Many of these functions were
    originally a part of the 'devtools' package, this provides a simple
    package with limited dependencies to provide access to these
    functions.
Provides a minimal R and C++ API for parsing
  well-known binary and well-known text representation of
  geometries to and from R-native formats. 
  Well-known binary is compact
  and fast to parse; well-known text is human-readable
  and is useful for writing tests. These formats are only
  useful in R if the information they contain can be 
  accessed in R, for which high-performance functions 
  are provided here.
Utility functions to convert between the 'Spatial' classes
  specified by the package 'sp', and the well-known binary '(WKB)'
  representation for geometry specified by the 'Open Geospatial Consortium'.
  Supports 'Spatial' objects of class 'SpatialPoints',
  'SpatialPointsDataFrame', 'SpatialLines', 'SpatialLinesDataFrame',
  'SpatialPolygons', and 'SpatialPolygonsDataFrame'. Supports 'WKB' geometry
  types 'Point', 'LineString', 'Polygon', 'MultiPoint', 'MultiLineString', and
  'MultiPolygon'. Includes extensions to enable creation of maps with
  'TIBCO Spotfire'.
Implementation of an adaptive weighted k-nearest neighbours (wk-NN) imputation algorithm for clinical register data developed to explicitly handle missing values of continuous/ordinal/categorical and static/dynamic features conjointly. For each subject with missing data to be imputed, the method creates a feature vector constituted by the information collected over his/her first 'window_size' time units of visits. This vector is used as sample in a k-nearest neighbours procedure, in order to select, among the other patients, the ones with the most similar temporal evolution of the disease over time. An ad hoc similarity metric was implemented for the sample comparison, capable of handling the different nature of the data, the presence of multiple missing values and include the cross-information among features.
Converts weekly data to monthly data.
     Users can use three types of week formats: ISO week, epidemiology week (epi week) and calendar date.
Provides extra utilities for well-known formats in the
  'wk' package that are outside the scope of that package. Utilities
  to parse coordinates from data frames, plot well-known geometry
  vectors, extract meta information from well-known geometry vectors,
  and calculate bounding boxes are provided.
It proposes a novel variable selection approach taking into account the correlations that may exist between the predictors of the design matrix in a high-dimensional linear model. Our approach consists in rewriting the initial high-dimensional linear model to remove the correlation between the predictors and in applying the generalized Lasso criterion. For further details we refer the reader to the paper <arXiv:2007.10768> (Zhu et al., 2020).
Estimate the parameters of weighted Lindley distribution, and provide some 
              useful results like goodness of fit or confidence interval etc.
              Ghitany, M., Alqallaf, F., Al-Mutairi, D., Husain, H. (2011) <doi:10.1016/j.matcom.2010.11.005>.
              Hyoung-Moon Kim. and Yu-Hyeong Jang. (2020) submitted.
              Wang, M., Wang, W. (2017) <doi:10.1080/03610918.2014.970696>.
Use various regression models for the analysis of win loss endpoints 
             adjusting for non-binary and multivariate covariates.
Distance discriminant analysis method is one of
        classification methods according to multiindex performance
        parameters.However,the traditional Mahalanobis distance
        discriminant method treats with the importance of all
        parameters equally,and exaggerates the role of parameters which
        changes a little.The weighted Mahalanobis distance is used in
        discriminant analysis method to distinguish the importance of
        each parameter.In the concrete application,firstly based on the
        principal component analysis scheme,a new group of parameters
        and their corresponding percent contributions of the parameters
        are calculated ,and the weighted matrix is regarded as the
        diagonal matrix of the contributions rates.Setting data to
        standardization,then the weighted Mahalanobis distance can be
        calculated.Besides the methods metioned above,bayes method is
        also given.
Analyzing the texture of an image from a multifractal wavelet leader analysis.
Calculate magnetic field at a given location and time according to 
  the World Magnetic Model (WMM). Both the main field and secular variation 
  components are returned. This functionality is useful for physicists and 
  geophysicists who need orthogonal components from WMM. Currently, this package 
  supports annualized time inputs between 2000 and 2025. If desired, users can
  specify which WMM version to use, e.g., the original WMM2015 release or the 
  recent out-of-cycle WMM2015 release. Methods used to implement WMM, including 
  the Gauss coefficients for each release, are described in the following 
  publications: Chulliat et al (2020) <doi:10.25923/ytk1-yx35>,
  Chulliat et al (2019) <doi:10.25921/xhr3-0t19>, 
  Chulliat et al (2015) <doi:10.7289/V5TB14V7>, 
  Maus et al (2010) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/WMM2010_Report.pdf>, 
  McLean et al (2004) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/TRWMM_2005.pdf>,
  and Macmillian et al (2000) <https://www.ngdc.noaa.gov/geomag/WMM/data/WMMReports/wmm2000.pdf>.
Power calculator for the two-sample Wilcoxon-Mann-Whitney rank-sum test for a continuous outcome (Mollan, Trumble, Reifeis et. al., Mar. 2020) <doi:10.1080/10543406.2020.1730866> <arXiv:1901.04597>, (Mann and Whitney 1947) <doi:10.1214/aoms/1177730491>, (Shieh, Jan, and Randles 2006) <doi:10.1080/10485250500473099>.
Calculates the minimal sample size for the Wilcoxon-Mann-Whitney test
    that is needed for a given power and two sided type I error rate. The method works for metric data with and without
    ties, count data, ordered categorical data, and even dichotomous data.
    But data is needed for the reference group to generate synthetic data for the treatment group based on a relevant effect.
    For details, see Brunner, E., Bathke A. C. and Konietschke, F: Rank- and Pseudo-Rank Procedures in Factorial Designs - Using R and SAS, Springer Verlag, to appear.
This is a set of minimization tools (maximum likelihood estimation and least square fitting) to solve examples in the Johan Gabrielsson and Dan Weiner's book "Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications" 5th ed. (ISBN:9198299107). Examples include linear and nonlinear compartmental model, turn-over model, single or multiple dosing bolus/infusion/oral models, allometry, toxicokinetics, reversible metabolism, in-vitro/in-vivo extrapolation, enterohepatic circulation, metabolite modeling, Emax model, inhibitory model, tolerance model, oscillating response model, enantiomer interaction model, effect compartment model, drug-drug interaction model, receptor occupancy model, and rebound phenomena model.
New tools for the imputation of missing values in high-dimensional
    data are introduced using the non-parametric nearest neighbor methods. It
    includes weighted nearest neighbor imputation methods that use specific
    distances for selected variables. It includes an automatic procedure of cross
    validation and does not require prespecified values of the tuning parameters.
    It can be used to impute missing values in high-dimensional data when the sample
    size is smaller than the number of predictors. For more information see Faisal
    and Tutz (2017) <doi:10.1515/sagmb-2015-0098>.
Estimates Poole and Rosenthal's (1985 <doi:10.2307/2111172>, 1991 <doi:10.2307/2111445>)
	W-NOMINATE scores from roll call votes supplied though a 'rollcall'
	object from the 'pscl' package.
Shows the relationship between an independent and dependent variable through Weight of Evidence and Information Value.
Implements an automated binning of numeric variables and factors with
 respect to a dichotomous target variable.
 Two approaches are provided: An implementation of fine and coarse classing that
 merges granular classes and levels step by step. And a tree-like approach that
 iteratively segments the initial bins via binary splits. Both procedures merge,
 respectively split, bins based on similar weight of evidence (WOE) values and
 stop via an information value (IV) based criteria.
 The package can be used with single variables or an entire data frame. It provides
 flexible tools for exploring different binning solutions and for deploying them to
 (new) data.
Implements a spatiotemporal boundary detection model with a dissimilarity
    metric for areal data with inference in a Bayesian setting using Markov chain
    Monte Carlo (MCMC). The response variable can be modeled as Gaussian (no nugget),
    probit or Tobit link and spatial correlation is introduced at each time point
    through a conditional autoregressive (CAR) prior. Temporal correlation is introduced
    through a hierarchical structure and can be specified as exponential or first-order
    autoregressive. Full details of the package can be found in the accompanying vignette.
    Furthermore, the details of the package can be found in "Diagnosing Glaucoma 
    Progression with Visual Field Data Using a Spatiotemporal Boundary Detection Method", 
    by Berchuck et al (2018), <arXiv:1805.11636>. The paper is in press at the Journal of 
    the American Statistical Association.
A hierarchy of classes and methods for manipulating matrices formed implicitly from the sums of the inverses of other matrices, a situation commonly encountered in spatial statistics and related fields. Enables easy use of the Woodbury matrix identity and the matrix determinant lemma to allow computation (e.g., solving linear systems) without having to form the actual matrix. More information on the underlying linear algebra can be found in Harville, D. A. (1997) <doi:10.1007/b98818>.
Tools for generating simulated sawn timber
    strength grading data with a main focus on statistical simulation based on
    covariance matrices. Simulation data
    for Norway spruce sawn timber from Austria and reference values of means and
    standard deviations of grade determining properties from literature
    for a number of European countries are provided, as well.
Students learning both econometrics and R may find the introduction 
    to both challenging. The wooldridge data package aims to lighten the task by efficiently 
    loading any data set found in the text with a single command. Data sets have been 
    compressed to a fraction of their original size. Documentation files contain page numbers, 
    the original source, time of publication, and notes from the author suggesting avenues for 
    further analysis and research. If one needs an introduction to R model syntax, a 
    vignette contains solutions to examples from chapters of the text. 
    Data sets are from the 7th edition (Wooldridge 2020, ISBN-13: 978-1-337-55886-0), 
    and are backwards compatible with all previous versions of the text.
Create reproducible and transparent research projects in 'R'.
    This package is based on the Workflow for Open
    Reproducible Code in Science (WORCS), a step-by-step procedure based on best
    practices for
    Open Science. It includes an 'RStudio' project template, several
    convenience functions, and all dependencies required to make your project
    reproducible and transparent. WORCS is explained in the tutorial paper
    by Van Lissa, Brandmaier, Brinkman, Lamprecht, Struiksma, & Vreede (2020).
    <doi:10.17605/OSF.IO/ZCVBS>.
For a given Sentence-Aligned Parallel Corpus, it aligns words for each sentence pair. It considers one-to-many and symmetrization alignments. Moreover, it evaluates the quality of word alignment based on this package and some other software. It also builds an automatic dictionary of two languages based on given parallel corpus.
Learn vector representations of words by continuous bag of words and skip-gram implementations of the 'word2vec' algorithm. 
    The techniques are detailed in the paper "Distributed Representations of Words and Phrases and their Compositionality" by Mikolov et al. (2013), available at <arXiv:1310.4546>.
Tools for connecting to Wordbank, an open repository for
    developmental vocabulary data. For more information on the
    underlying data, see <http://wordbank.stanford.edu>.
Functionality to create pretty word clouds, visualize differences and similarity between documents, and avoid over-plotting in scatter plots with text.
A fast visualization tool for creating wordcloud
    by using 'wordcloud2.js'. 'wordcloud2.js' is a JavaScript library to create 
    wordle presentation on 2D canvas or HTML <https://timdream.org/wordcloud2.js/>.
Functions that help less experienced R users to make graph analysis for free associated words, or more generally for repeated nominal data for which a undirected graph analysis is meaningful. By corresponding to each word its centrality, it is possible to apply standard quantitative analysis methods in order to associate word selection with other   variables.
    The functions are implemented with the aid of the 'tibble', 'tidygraph', 'ggraph' and 'ggplot2' packages. Supported centrality functions are centrality_alpha(), centrality_authority(), centrality_betweenness(), centrality_closeness(), centrality_pagerank(), centrality_eigen(). A data set is included.
Matches words in one file with words in another file and shows index(row number) for the matches
An interface to WordNet using the Jawbone Java API to WordNet.
  WordNet (<https://wordnet.princeton.edu/>) is a large lexical database of
  English.  Nouns, verbs, adjectives and adverbs are grouped into sets of
  cognitive synonyms (synsets), each expressing a distinct concept.  Synsets
  are interlinked by means of conceptual-semantic and lexical relations.
  Please note that WordNet(R) is a registered tradename.  Princeton
  University makes WordNet available to research and commercial users
  free of charge provided the terms of their license
  (<https://wordnet.princeton.edu/license-and-commercial-use>) are followed,
  and proper reference is made to the project using an appropriate
  citation (<https://wordnet.princeton.edu/citing-wordnet>).
Methods for estimating profit, profit-maximizing price, demand and consumer surplus of Word-of-Mouth-campaigns on mean-field networks.
Apply 'Wordpiece' (<arXiv:1609.08144>) tokenization to input text, 
 given an appropriate vocabulary. The 'BERT' (<arXiv:1810.04805>) tokenization 
 conventions are used by default.
Provides data to be used by the wordpiece algorithm in order to 
    tokenize text into somewhat meaningful chunks. Included vocabularies were 
    retrieved from 
    <https://huggingface.co/bert-base-cased/resolve/main/vocab.txt> and 
    <https://huggingface.co/bert-base-uncased/resolve/main/vocab.txt> and parsed
    into an R-friendly format.
Collects several classical word pools used most often
    to provide lists of words in psychological studies of learning and memory. It
    provides a simple function, 'pickList' for selecting random samples of words
    within given ranges.
A framework for developing n-gram models for text prediction.
    It provides data cleaning, data sampling, extracting tokens from text,
    model generation, model evaluation and word prediction. For information on how n-gram models 
    work we referred to: "Speech and Language Processing"
    <https://web.stanford.edu/~jurafsky/slp3/3.pdf>. For optimizing R code and
    using R6 classes we referred to "Advanced R" 
    <https://adv-r.hadley.nz/r6.html>. For writing R extensions we referred to 
    "R Packages", <https://r-pkgs.org/index.html>.
Serves for rendering MS Word documents with R inline code and inserting tables and plots.
List of english scrabble words as listed in the OTCWL2014
    <https://www.scrabbleplayers.org/w/Official_Tournament_and_Club_Word_List_2014_Edition>.
    Words are collated from the 'Word Game Dictionary' <https://www.wordgamedictionary.com/word-lists/>.
Provides access to various word embedding methods (GloVe, 
    fasttext and word2vec) to extract word vectors using a unified framework to
    increase reproducibility and correctness.
An interactive laboratory for research on distributional semantic models ('DSM',
             see <https://en.wikipedia.org/wiki/Distributional_semantics> for more information).
Provides a workflow for your analysis projects by combining
  literate programming ('knitr' and 'rmarkdown') and version control
  ('Git', via 'git2r') to generate a website containing time-stamped,
  versioned, and documented results.
Managing both a 'parsnip' model and a preprocessor, such as a
    model formula or recipe from 'recipes', can often be challenging. The goal
    of 'workflows' is to streamline this process by bundling the model alongside
    the preprocessor, all within the same object.
A workflow is a combination of a model and preprocessors
    (e.g, a formula, recipe, etc.) (Kuhn and Silge (2021)
    <https://www.tmwr.org/>). In order to try different combinations of
    these, an object can be created that contains many workflows. There
    are functions to create workflows en masse as well as training them
    and visualizing the results.
Functions for the import, transformation, and analysis of data 
    from muscle physiology experiments. The work loop technique is used to 
    evaluate the mechanical work and power output of muscle. Josephson (1985) 
    <doi:10.1242/jeb.114.1.493> modernized the technique for
    application in comparative biomechanics. Although our initial motivation 
    was to provide functions to analyze work loop experiment data, as we 
    developed the package we incorporated the ability to analyze data from 
    experiments that are often complementary to work loops. There are currently 
    three supported experiment types: work loops, simple twitches, and tetanus 
    trials. Data can be imported directly from .ddf files or via an object 
    constructor function. Through either method, data can then be cleaned or 
    transformed via methods typically used in studies of muscle physiology. 
    Data can then be analyzed to determine the timing and magnitude of force 
    development and relaxation (for isometric trials) or the magnitude of work, 
    net power, and instantaneous power among other things (for work loops). 
    Although we do not provide plotting functions, all resultant objects are 
    designed to be friendly to visualization via either base-R plotting or 
    'tidyverse' functions.
 This package has been peer-reviewed by rOpenSci (v. 1.1.0).
World Flora Online is an online flora of all known plants, available from <http://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
A set of functions to allow users to obtain clean and tidy
    football (soccer) game, team and player data. Data is collected from a
    number of popular sites, including 'FBref'<https://fbref.com/en/>,
    transfer and valuations data from
    'Transfermarkt'<https://www.transfermarkt.com/> and shooting location
    data from 'Understat'<https://understat.com/>. It gives users the
    ability to access data more efficiently, rather than having to export
    data tables to files before being able to complete their analysis.
Functions to import data from more than 30,000 surface
    meteorological sites around the world managed by the National Oceanic and Atmospheric Administration (NOAA) Integrated Surface
    Database (ISD, see <https://www.ncdc.noaa.gov/isd>).
Retrieves taxonomic information from  <http://www.marinespecies.org> using WoRMS' RESTful Webservice. Utility functions aim at taxonomic consistency.
Client for World Register of Marine Species
    (<http://www.marinespecies.org/>). Includes functions for each
    of the API methods, including searching for names by name, date and
    common names, searching using external identifiers, fetching
    synonyms, as well as fetching taxonomic children and
    taxonomic classification.
R clients to the 'Web of Science' and 'InCites' 
  <https://clarivate.com/products/data-integration/> APIs, which 
  allow you to programmatically download publication and citation data
  indexed in the 'Web of Science' and 'InCites' databases.
Introduce weights into Ordered Weighted Averages and extend bivariate means based on n-ary tree construction. Please refer to the following:
	G. Beliakov, H. Bustince, and T. Calvo (2016, ISBN: 978-3-319-24753-3),
	G. Beliakov(2018) <doi:10.1002/int.21913>,
	G. Beliakov, J.J. Dujmovic (2016) <doi:10.1016/j.ins.2015.10.040>,
	J.J. Dujmovic and G. Beliakov (2017) <doi:10.1002/int.21828>.
Opinionated functions that enable easier and faster
    analysis of Workplace Analytics data. There are three main types of functions in 'wpa':
    (i) Standard functions create a 'ggplot' visual or a summary table based on a specific
    Workplace Analytics metric; (2) Report Generation functions generate HTML reports on
    a specific analysis area, e.g. Collaboration; (3) Other miscellaneous functions cover
    more specific applications (e.g. Subject Line text mining) of Workplace Analytics data.
    This package adheres to 'tidyverse' principles and works well with the pipe syntax.
    'wpa' is built with the beginner-to-intermediate R users in mind, and is optimised for
    simplicity.
Implementing weighted predictiveness curve to visualize the marker-by-treatment relationship and measure the performance of biomarkers for guiding treatment decision.
Supplies permutation-test alternatives to traditional hypothesis-test
  procedures such as two-sample tests for means, medians, and standard deviations;
  correlation tests; tests for homogeneity and independence; and more. Suitable for
  general audiences, including individual and group users, introductory statistics
  courses, and more advanced statistics courses that desire an introduction to
  permutation tests.
Weighted Piecewise Kernel Density Estimation for large data.
Data from the United Nation's World Population Prospects 2008
Data from the United Nation's World Population Prospects
        2010
Data from the United Nation's World Population Prospects 2012
Provides data from the United Nation's World Population Prospects 2015.
Provides data from the United Nation's World Population Prospects 2017.
Provides data from the United Nation's World Population Prospects 2019.
Explore data in the 'wpp2019' (or 2017, 2015, ...) package using a 'shiny' interface.
Functions to assist in the processing and
    exploration of data from environmental monitoring programs.
    The package name stands for "water quality" and reflects the
    original focus on time series data for physical and chemical
    properties of water, as well as the biota. Intended for
    programs that sample approximately monthly, quarterly or
    annually at discrete stations, a feature of many legacy data
    sets. Most of the functions should be useful for analysis of
    similar-frequency time series regardless of the subject
    matter.
Fits weighted quantile sum regression models, calculates weighted quantile sum index and estimated component weights.
Implements various win ratio methodologies for composite endpoints of death and 
  non-fatal events, including the (stratified) proportional win-fractions (PW) regression models 
  (Mao and Wang, 2020 <doi:10.1111/biom.13382>), (stratified) two-sample tests with possibly 
  recurrent nonfatal event, and sample size calculation for standard win ratio test (Mao et al., 
  2021 <doi:10.1111/biom.13501>).
Supports systematic scrutiny, modification, and integration of
    data. The function status() counts rows that have missing values in 
    grouping columns (returned by na() ), have non-unique combinations of 
    grouping columns (returned by dup() ), and that are not locally sorted
    (returned by unsorted() ). Functions enumerate() and itemize() give 
    sorted unique combinations of columns, with or without occurrence counts,
    respectively. Function ignore() drops columns in x that are present in y,
    and informative() drops columns in x that are entirely NA; constant() returns
    values that are constant, given a key.  Data that have defined unique 
    combinations of grouping values behave more predictably during merge operations.
The main functionalities of 'wrappedtools' are:
    adding backticks to variable names; rounding to desired precision 
    with special case for p-values; 
    selecting columns based on pattern and storing their position, name, 
    and backticked name; computing and formatting of descriptive statistics 
    (e.g. mean±SD), comparing groups and creating publication-ready tables with 
    descriptive statistics and p-values; creating specialized plots for 
    correlation matrices. Functions were mainly written for my own daily work or 
    teaching, but may be of use to others as well.
Tools for writing and debugging R code. Provides: 
    '%.>%' dot-pipe (an 'S3' configurable pipe), unpack/to (R style multiple assignment/return),
    'build_frame()'/'draw_frame()' ('data.frame' example tools),
    'qc()' (quoting concatenate), 
    ':=' (named map builder), 'let()' (converts non-standard evaluation interfaces to parametric standard
    evaluation interfaces, inspired by 'gtools::strmacro()' and 'base::bquote()'), and more.
A wrapper around Michel Scheffers's 'libassp' (<http://libassp.sourceforge.net/>). 
    The 'libassp' (Advanced Speech Signal Processor) library aims at providing
    functionality for handling speech signal files in most common audio formats
    and for performing analyses common in phonetic science/speech science. This
    includes the calculation of formants, fundamental frequency, root mean
    square, auto correlation, a variety of spectral analyses, zero crossing
    rate, filtering etc. This wrapper provides R with a large subset of
    'libassp's signal processing functions and provides them to the user in a
    (hopefully) user-friendly manner.
Additional options for making graphics in the context of analyzing high-throughput data are available here.
  This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots, 
  automatic checking for optimal location of legends in plots, small histograms to insert as legends, 
  histograms re-transforming axis labels to linear when plotting log2-transformed data,
  a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats, 
  principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples, 
  generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>, 
  staggered count plots and generation of mouse-over interactive html pages.
An implementation of the methodologies described in Alexander Petersen, Xi Liu and Afshin A. Divani (2019) <arXiv:1910.13418>, including global F tests, partial F tests, intrinsic 
        Wasserstein-infinity bands and Wasserstein density bands.
A powerful yet simple graphical tool available in the field of psychometrics is the Wright Map (also known as item maps or item-person maps), which presents the location of both respondents and items on the same scale. Wright Maps are commonly used to present the results of dichotomous or polytomous item response models. The 'WrightMap' package provides functions to create these plots from item parameters and person estimates stored as R objects. Although the package can be used in conjunction with any software used to estimate the IRT model (e.g. 'TAM', 'mirt', 'eRm' or 'IRToys' in 'R', or 'Stata', 'Mplus', etc.),  'WrightMap' features special integration with 'ConQuest' to facilitate reading and plotting its output directly.The 'wrightMap' function creates Wright Maps based on person estimates and item parameters produced by an item response analysis. The 'CQmodel' function reads output files created using 'ConQuest' software and creates a set of data frames for easy data manipulation, bundled in a 'CQmodel' object. The 'wrightMap' function can take a 'CQmodel' object as input or it can be used to create Wright Maps directly from data frames of person and item parameters.
Function for writing a SNNS pattern file from a data.frame
        or matrix.
Zero-dependency data frame to xlsx exporter based on 'libxlsxwriter'. 
    Fast and no Java or Excel required.
Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX)
             files from one or more data frames. Each data frame will be
             written to a separate named worksheet in the Excel spreadsheet.
             The worksheet name will be the name of the data frame it contains
             or can be specified by the user.
The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions. 
  Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.  
  Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM) for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates). 
  Other functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc. 
  Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large data-sets by combining very close values. 
  Many times large experimental datasets need some additional filtering, adequate functions are provided. 
  Batch reading (or writing) of sets of files and combining data to arrays is supported, too. 
  Convenient data normalization is supported in various different modes, parameter estimation via permutations or boot-strap as well as flexible testing of multiple pair-wise combinations using the framework of 'limma' is provided, too.
Data analysis of proteomics experiments by mass spectrometry is supported by this collection of functions mostly dedicated to the analysis of (bottom-up) quantitative (XIC) data. 
    Fasta-formatted proteomes (eg from UniProt Consortium <doi:10.1093/nar/gky1049>) can be read with automatic parsing and multiple annotation types (like species origin, abbreviated gene names, etc) extracted. 
    Quantitative proteomics measurements frequently contain multiple NA values, due to physical absence of given peptides in some samples, limitations in sensitivity or other reasons. 
    The functions provided here help to inspect graphically the data to investigate the nature of NA-values via their respective replicate measurements and to help/confirm the choice of NA-replacement by low random values. 
    Dedicated filtering and statistical testing using the framework of package 'limma' <doi:10.18129/B9.bioc.limma> can be run, enhanced by multiple rounds of NA-replacements to provide robustness towards rare stochastic events. 
    Multi-species samples, as frequently used in benchmark-tests (eg Navarro et al 2016 <doi:10.1038/nbt.3685>, Ramus et al 2016 <doi:10.1016/j.jprot.2015.11.011>), can be run with special options separating the data into sub-groups during normalization and testing. 
    As example the data-set from Ramus et al 2016 <doi:10.1016/j.jprot.2015.11.011>) is provided quantified by MaxQuant (Tyanova et al 2016 <doi:10.1038/nprot.2016.136>), ProteomeDiscoverer,
    OpenMS (<doi:10.1038/nmeth.3959>) and Proline (Bouyssie et al 2020 <doi:10.1093/bioinformatics/btaa118>).
    Subsequently, ROC curves (Hand and Till 2001 <doi:10.1023/A:1010920819831>) can be constructed to compare multiple analysis approaches.
A collection of robust statistical methods based on Wilcox' WRS functions. It implements robust t-tests (independent and dependent samples), robust ANOVA (including between-within subject designs), quantile ANOVA, robust correlation, robust mediation, and nonparametric ANCOVA models based on robust location measures.
Water resources system simulator is a tool for simulation and analysis of large-scale water resources systems. 'WRSS' proposes functions and methods for construction, simulation and analysis of primary storage and hydropower water resources features (e.g. reservoirs, aquifers, and etc.) based on Standard Operating Policy (SOP).
A collection of implementations of classical and
    novel algorithms for weighted sampling without replacement.
An adaptation for estuaries (tidal waters) of weighted regression
    on time, discharge, and season to evaluate trends in water quality time series.
Top-Down mass spectrometry aims to identify entire proteins as well as their (post-translational) modifications or ions bound (eg Chen et al (2018) <doi:10.1021/acs.analchem.7b04747>). 
    The pattern of internal fragments (Haverland et al (2017) <doi:10.1007/s13361-017-1635-x>) may reveal important information about the original structure of the proteins studied 
    (Skinner et al (2018) <doi:10.1038/nchembio.2515> and Li et al (2018) <doi:10.1038/nchem.2908>). 
    However, the number of possible internal fragments gets huge with longer proteins and subsequent identification of internal fragments remains challenging, 
    in particular since the the accuracy of measurements with current mass spectrometers represents a limiting factor.   
    This package attempts to deal with the complexity of internal fragments and allows identification of terminal and internal fragments from deconvoluted mass-spectrometry data.
Predicts individual race/ethnicity using surname, geolocation,
    and other attributes, such as gender and age. The method utilizes the Bayes'
    Rule to compute the posterior probability of each racial category for any given
    individual. The package implements methods described in Imai and Khanna (2016)
    "Improving Ecological Inference by Predicting Individual Ethnicity from Voter
    Registration Records" Political Analysis <DOI:10.1093/pan/mpw001>.
Non- and semiparametric regression for generalized additive, partial linear, and varying coefficient models as well as their combinations via smoothed backfitting. Based on Roca-Pardinas J and Sperlich S (2010) <doi:10.1007/s11222-009-9130-2>; Mammen E, Linton O and Nielsen J (1999) <doi:10.1214/aos/1017939138>; Lee YK, Mammen E, Park BU (2012) <doi:10.1214/12-AOS1026>.
Includes a variety of methods to compute objects related to the 'Wasserstein distance' (also known as 'Kantorovich distance' or 'Earth-Mover distance'). The main effort of this package is to allow for computations of 'Wasserstein barycenter' using regularised, unregularised and stochastic methods. It also provides convenient wrappers to call the 'transport' package with more general inputs. Handy visual tools are provided to showcase, barycenters, animations of optimal transport geodesics and animations of principal components in the 'Wasserstein space'. It also includes tools to compute 'Kantorovich-Rubinstein' distances and barycenters.
Easily override the default visual choices in 'ggplot2' to make 
    your time series plots look more like the Wall Street Journal. Specific 
    theme design choices include omitting x-axis grid lines and displaying 
    sparse light grey y-axis grid lines. Additionally, this allows to label 
    the y-axis scales with your units only displayed on the top-most number, 
    while also removing the bottom most number (unless specifically 
    overridden). The goal is visual simplicity, because who has time to waste 
    looking at a cluttered graph?
Entropy weighted k-means (ewkm) by Liping Jing, Michael
        K. Ng and Joshua Zhexue Huang (2007)
        <doi:10.1109/TKDE.2007.1048> is a weighted subspace clustering
        algorithm that is well suited to very high dimensional data.
        Weights are calculated as the importance of a variable with
        regard to cluster membership.  The two-level variable
        weighting clustering algorithm tw-k-means (twkm) by Xiaojun
        Chen, Xiaofei Xu, Joshua Zhexue Huang and Yunming Ye (2013)
        <doi:10.1109/TKDE.2011.262> introduces two types of weights,
        the weights on individual variables and the weights on
        variable groups, and they are calculated during the clustering
        process.  The feature group weighted k-means (fgkm) by Xiaojun
        Chen, Yunminng Ye, Xiaofei Xu and Joshua Zhexue Huang (2012)
        <doi:10.1016/j.patcog.2011.06.004> extends this concept by
        grouping features and weighting the group in addition to
        weighting individual features.
A weighted selection probability to locate rare variants associated with multiple phenotypes.
A parallel implementation of Weighted Subspace Random Forest.  The
    Weighted Subspace Random Forest algorithm was proposed in the
    International Journal of Data Warehousing and Mining by Baoxun Xu,
    Joshua Zhexue Huang, Graham Williams, Qiang Wang, and Yunming Ye
    (2012) <DOI:10.4018/jdwm.2012040103>.  The algorithm can classify
    very high-dimensional data with random forests built using small
    subspaces.  A novel variable weighting method is used for variable
    subspace selection in place of the traditional random variable
    sampling.This new approach is particularly useful in building
    models from high-dimensional data.
We propose weighted SVM methods with penalization form. By
        adding weights to loss term, we can build up weighted SVM
        easily and examine classification algorithm properties under
        weighted SVM. Through comparing each of test error rates, we
        conclude that our Weighted SVM with boosting has predominant
        properties than the standard SVM have, as a whole.
Tools for a wavelet-based approach to analyzing spatial synchrony, principally in ecological data. Some tools will be useful for studying community synchrony. See, for instance, Sheppard et al (2016) <doi: 10.1038/NCLIMATE2991>, Sheppard et al (2017) <doi: 10.1051/epjnbp/2017000>, Sheppard et al (2019) <doi: 10.1371/journal.pcbi.1006744>.
Perform the calculation of W-test, diagnostic checking, calculate
    minor allele frequency (MAF) and odds ratio.
Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks.  More about the methodology can be found at <arXiv:1711.04702>.
Evaluation of alternatives based on multiple criteria using weighted technique for Order preference by similarity to an ideal solution method. Reference: Hwang CL. (1981, ISBN:978-3-540-10558-9).
Allows form managers to download entries from their respondents
    using Wufoo JSON API (<https://www.wufoo.com>). Additionally, the Wufoo reports - when public - can be
    also acquired programmatically. Note that building new forms within this package
    is not supported.
Methods to calculate and interpret climate change signals and time series from climate multi-model ensembles. Climate model output in binary 'NetCDF' format is read in and aggregated over a specified region to a data.frame for statistical analysis. Global Circulation Models, as the 'CMIP5' simulations, can be read in the same way as Regional Climate Models, as e.g. the 'CORDEX' or 'ENSEMBLES' simulations. The package has been developed at the 'Wegener Center for Climate and Global Change' at the University of Graz, Austria.
Provides a series of tools to compute and plot quantities related to classical and robust wavelet variance for time series and regular lattices. More details can be found, for example, in Serroukh, A., Walden, A.T., & Percival, D.B. (2000) <doi:10.2307/2669537> and Guerrier, S. & Molinari, R. (2016) <arXiv:1607.05858>.
Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.  
   Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions, 
   conditioned scatter plot with marginal densities,
   box and stem with matching theoretical distribution, and density with matching theoretical distribution.
This tool, wood vision tool, is intended to facilitate preprocessing and analyzing 2-dimensional wood images toward automated recognition. The former includes some basics such as functions to RGB to grayscale, gray to binary, cropping, rotation(bilinear), median/mean/Gaussian filter, and Canny/Sobel edge detection. The latter includes gray level co-occurrence matrix (GLCM), Haralick parameters, local binary pattern (LBP), higher order local autocorrelation (HLAC), Fourier transform (radial and azimuthal integration), and Gabor filtering. The functions are intended to read data using  'readTIFF(x,info=T)' from 'tiff' package. The functions in this packages basically assumes the grayscale images as input data, thus the color images should be subjected to the function rgb2gray() before used for some other functions.
Book is "Linear Mixed Models: A Practical Guide Using
        Statistical Software" published in 2006 by Chapman Hall / CRC
        Press
Provides an array of white noise hypothesis tests for functional data and related visualizations. 
  These include tests based on the norms of autocovariance operators that are built under both strong and weak 
  white noise assumptions. Additionally, tests based on the spectral density operator and on principal component
  dimensional reduction are included, which are built under strong white noise assumptions. These methods are
  described in Kokoszka et al. (2017) <doi:10.1016/j.jmva.2017.08.004>, Characiejus and Rice (2019) 
  <doi:10.1016/j.ecosta.2019.01.003>, and Gabrys and Kokoszka (2007) <doi:10.1198/016214507000001111>, 
  respectively.
Calculate the (weighted) win loss statistics including the win ratio, win difference and win product 
 and their variances, with which the p-values are also calculated. The variance estimation is based on 
 Luo et al. (2015) <doi:10.1111/biom.12225> and Luo et al. (2017) <doi:10.1002/sim.7284>. This package also calculates general win loss statistics with 
 user-specified win loss function with variance estimation based on 
 Bebu and Lachin (2016) <doi:10.1093/biostatistics/kxv032>.
 This version corrected an error when outputting confidence interval for win difference.
Meta testing is the ability to test a function without having to 
    provide its parameter values.
    Those values will be generated, based on semantic naming of parameters, as 
    introduced by package 'wyz.code.offensiveProgramming'.
    Value generation logic can be completed with your own data types 
    and generation schemes. This to meet your most specific requirements and to 
    answer to a wide variety of usages, from general use case to very specific
    ones.
    While using meta testing, it becomes easier to generate stress test 
    campaigns, non-regression test campaigns and robustness test campaigns, as 
    generated tests can be saved and reused from session to session. 
    Main benefits of using 'wyz.code.metaTesting' is ability to discover valid 
    and invalid function parameter combinations, ability to infer valid 
    parameter values, and to provide smart summaries that allows you to focus
    on dysfunctional cases.
Allows to turn standard R code into offensive programming code. 
    Provides code instrumentation to ease this change and tools to assist and 
    accelerate code production and tuning while using offensive programming code 
    technics. 
    Should improve code robustness and quality. Function calls can be easily 
    verified on-demand or in batch mode to assess parameter types and length 
    conformities. 
    Should improve coders productivity as offensive programming reduces the code
    size due to reduced number of controls all along the call chain. 
    Should speed up processing as many checks will be reduced to one single check.
Allows to generate on-demand or by batch, any R documentation file,
    whatever is kind, data, function, class or package. It populates
    documentation sections, either automatically or by considering
    your input. Input code could be standard R code or offensive programming code. 
    Documentation content completeness depends on the type of code you use. With
    offensive programming code, expect generated documentation to be fully 
    completed, from a format and content point of view. With some standard R 
    code, you will have to activate post processing to fill-in any section that 
    requires complements. Produced manual page validity is automatically tested 
    against R documentation compliance rules. Documentation language 
    proficiency, wording style, and phrasal adjustments remains your job.
Allows to generate automatically 'testthat' code files from offensive 
    programming test cases. Generated test files are complete and ready to run.
    Using 'wyz.code.testthat' you will earn a lot of time, reduce the number of
    errors in test case production, be able to test immediately generated files 
    without any need to view or modify them, and enter a zero time latency between 
    code implementation and industrial testing. As with 'testthat', you may
    complete provided test cases according to your needs to push testing further, 
    but this need is nearly void when using 'wyz.code.offensiveProgramming'.
Provides a tool for extracting information (entities and relations between them) in text datasets. It also emphasizes the results exploration with graphical displays. It is a rule-based system and works with hand-made dictionaries and local grammars defined by users. 'x.ent' uses parsing with Perl functions and JavaScript to define user preferences through a browser and R to display and support analysis of the results extracted. Local grammars are defined and compiled with the tool Unitex, a tool developed by University Paris Est that supports multiple languages. See ?xconfig for an introduction.
The 'X13-ARIMA-SEATS' <https://www.census.gov/srd/www/x13as/> methodology and software is a widely used software and developed by the US Census Bureau. It can be accessed from 'R' with this package and 'X13-ARIMA-SEATS' binaries are provided by the 'R' package 'x13binary'.
The US Census Bureau provides a seasonal adjustment program now
 called 'X-13ARIMA-SEATS' building on both earlier programs called X-11 and
 X-12 as well as the SEATS program by the Bank of Spain. The US Census Bureau
 offers both source and binary versions -- which this package integrates for
 use by other R packages.
The x3p file format  is specified in ISO standard 5436:2000 to 
    describe 3d surface measurements. 'x3ptools' allows reading, writing and 
    basic modifications to the 3D surface measurements.
Create HTML5 slides with R Markdown and the JavaScript library
    'remark.js' (<https://remarkjs.com>).
Create beautifully color-coordinated and customized themes
    for your 'xaringan' slides, without writing any CSS. Complete your
    slide theme with 'ggplot2' themes that match the font and colors used
    in your slides.  Customized styles can be created directly in your
    slides' 'R Markdown' source file or in a separate external script.
Simulation of purebred and crossbred genomic data as well as pedigree and phenotypes are possible by this package. 'xbreed' can be used for the simulation of populations with flexible genome structures and trait genetic architectures. It can also be used to evaluate breeding schemes and generate genetic data to test statistical tools.
Functions to extract business financial information from
  an Extensible Business Reporting Language ('XBRL') instance file and the
  associated collection of files that defines its 'Discoverable' Taxonomy
  Set ('DTS').
Functions for Estimating a (c)DCC-GARCH Model in large dimensions
    based on a publication by Engle et,al (2017) <doi:10.1080/07350015.2017.1345683> and Nakagawa et,al (2018) <doi:10.3390/ijfs6020052>.
    This estimation method is consist of composite likelihood method by Pakel et al. (2014) <http://paneldataconference2015.ceu.hu/Program/Cavit-Pakel.pdf>
    and (Non-)linear shrinkage estimation of covariance matrices by Ledoit and Wolf (2004,2015,2016). (<doi:10.1016/S0047-259X(03)00096-4>,
    <doi:10.1214/12-AOS989>, <doi:10.1016/j.jmva.2015.04.006>).
Datasets and definitions of generic functions used in dependencies of the 'xergm' package.
Read and write XES Files to create event log objects used by the 'bupaR' framework. XES (Extensible Event Stream) is the `IEEE` standard for storing and sharing event data (see <http://standards.ieee.org/findstds/standard/1849-2016.html> for more info).
Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
This tool enables in-database scoring of 'XGBoost' models built in R, by translating trained model objects into SQL query. 
  'XGBoost' <https://xgboost.readthedocs.io/en/latest/index.html> provides parallel tree boosting (also known as gradient boosting machine, or GBM) algorithms
  in a highly efficient, flexible and portable way. GBM algorithm is introduced by Friedman (2001) <doi:10.1214/aos/1013203451>, 
  and more details on 'XGBoost' can be found in Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>.
Extreme Gradient Boosting, which is an efficient implementation
    of the gradient boosting framework from Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>.
    This package is its R interface. The package includes efficient linear
    model solver and tree learning algorithms. The package can automatically
    do parallel computation on a single machine which could be more than 10
    times faster than existing gradient boosting packages. It supports
    various objective functions, including regression, classification and ranking.
    The package is made to be extensible, so that users are also allowed to define
    their own objectives easily.
Interface to the XGobi and XGvis programs for graphical
        data analysis.
Supports a structured approach
    for exploring PKPD data <https://opensource.nibr.com/xgx/>. It also
    contains helper functions for enabling the modeler to follow best R
    practices (by appending the program name, figure name location, and
    draft status to each plot). In addition, it enables the modeler to
    follow best graphical practices (by providing a theme that
    reduces chart ink, and by providing time-scale, log-scale, and
    reverse-log-transform-scale functions for more readable axes).
    Finally, it provides some data checking and summarizing functions for
    rapidly exploring pharmacokinetics and pharmacodynamics (PKPD) datasets.
Conduct the likelihood ratio tests for Hardy-Weinberg equilibrium at marker loci on the X chromosome.
Computes robust association measures that do not 
    presuppose linearity. The xi correlation (xicor) is based
    on cross correlation between ranked increments.
    The reference for the methods implemented here is 
    Chatterjee, Sourav (2020) <arXiv:1909.10140>
    This package includes the Galton peas example.
Provides a simple XML tree parser/generator. It includes
        functions to read XML files into R objects, get information out of
        and into nodes, and write R objects back to XML code. It's not as
        powerful as the 'XML' package and doesn't aim to be, but for simple
        XML handling it could be useful. It was originally developed for
        the R GUI and IDE 'RKWard' <https://rkward.kde.org>, to make plugin
        development easier.
Plotting ggplot2 graphs using the XKCD style.
The XKCD color survey asked participants to name colours. Randall Munroe published the top thousand(roughly) names and their sRGB hex values. This package lets you use them.
Download data from individual XKCD comics, written by Randall Munroe <https://xkcd.com/>.
Provides comprehensive functionality to read, write and format Excel data.
The expression of X-chromosome undergoes three possible biological processes: X-chromosome
             inactivation (XCI), escape of the X-chromosome inactivation (XCI-E),and skewed X-chromosome                    
             inactivation (XCI-S). To analyze the X-linked genetic association for phenotype such as                         
             continuous, binary, and time-to-event outcomes with the actual process unknown, we propose a unified            
             approach of maximizing the likelihood or partial likelihood over all of the potential biological             
             processes. The methods are described in Wei Xu, Meiling Hao (2017) <doi:10.1002/gepi.22097>. And 
             also see Dongxiao Han, Meiling Hao, Lianqiang Qu, Wei Xu (2019) <doi:10.1177/0962280219859037>.
Provides a tool for non linear mapping (non linear regression) using a mixture of regression model and an inverse regression strategy. The methods include the GLLiM model (see Deleforge et al (2015) <DOI:10.1007/s11222-014-9461-5>) based on Gaussian mixtures and a robust version of GLLiM, named SLLiM (see Perthame et al (2016) <https://hal.archives-ouvertes.fr/hal-01347455>) based on a mixture of Generalized Student distributions. The methods also include BLLiM (see Devijver et al (2017) <arXiv:1701.07899>) which is an extension of GLLiM with a sparse block diagonal structure for large covariance matrices (particularly interesting for transcriptomic data).
Provide R functions to read/write/format Excel 2007 and Excel 97/2000/XP/2003 file formats.
Reading and writing sheets of a single 'Excel' file into and from a list of data frames. Eases I/O of tabular data in bioinformatics while keeping them in a human readable format.
The xlsxjars package collects all the external jars
  required for the xlxs package. This release corresponds to POI
  3.10.1.
Extract Excel files from folder.
    Also display extracted data and compute a summary of it.
    Based on the 'readxl' package.
A toolbox for meta-analysis. This package includes (1) a robust multivariate meta-analysis of continuous or binary outcomes; (2) a bivariate Egger's test for detecting small study effects; (3) Galaxy Plot: A New Visualization Tool of Bivariate Meta-Analysis Studies; and (4) a bivariate T&F method accounting for publication bias in bivariate meta-analysis, based on symmetry of the galaxy plot.
This is Xiaobei's miscellaneous classes and functions useful when
    developing R packages, particularly for OOP using R Reference Class.
Many approaches for both reading and
        creating XML (and HTML) documents (including DTDs), both local
        and accessible via HTTP or FTP.  Also offers access to an
        'XPath' "interpreter".
Work with XML files using a simple, consistent
    interface. Built on top of the 'libxml2' C library.
XML2R is a framework that reduces the effort required to transform
    XML content into number of tables while preserving parent to child
    relationships.
Import an XML document with nested object structures and convert
    it into a relational data model. The result is a set of R dataframes 
    with foreign key relationships. The data model and the data can be exported as
    SQL code of different SQL flavors.
Converts XML documents to R dataframes and dataframes to XML documents.
  A wide variety of options allows for different XML formats and flexible control
  of the conversion process. Results can be exported to CSV and Excel, if desired. 
  Also converts XML data to R lists.
Convert the output of 'utils::getParseData()' to an 'XML'
    tree, that one can search via 'XPath', and easier to manipulate in
    general.
'XML' package for creating and reading and manipulating 'XML', with an object model based on 'Reference Classes'.
The 'XML-RPC' is a remote procedure call protocol 
    based on 'XML'. The 'xmlrpc2' package is inspired by the 'XMLRPC'
	package but uses the 'curl' and 'xml2' packages instead 'RCurl' and 'XML'.
XMRs combine X-Bar control charts and Moving Range control charts. These functions also will recalculate the reference lines when significant change has occurred.
Fit a two-step kernel ridge regression model for
        predicting edges in networks, and carry out cross-validation
        using shortcuts for swift and accurate performance assessment
        (Stock et al, 2018 <doi:10.1093/bib/bby095> ).
Tests whether a set of counts fit a given expected ratio. For
    example, a genetic cross might be expected to produce four types in the
    relative frequencies of 9:3:3:1. To see whether a set of observed counts
    fits this expectation, one can examine all possible outcomes with xmulti() or a
    random sample of them with xmonte() and find the probability of an observation
    deviating from the expectation by at least as much as the observed. As a
    measure of deviation from the expected, one can use the log-likelihood
    ratio, the multinomial probability, or the classic chi-square statistic. A
    histogram of the test statistic can also be plotted and compared with the
    asymptotic curve.
Analysis of crossover interference in experimental crosses,
    particularly regarding the gamma model. See, for example,
    Broman and Weber (2000) <doi:10.1086/302923>.
Cross platform solution to open files, directories or 'URLs'
    with their associated programs.
Helps systematize and ease the process of 
    building unit tests with the 'testthat' package by providing 
    tools for generating expectations.
Allows to provide live interpretations and explanations of statistical 
    functions in R. These interpretations and explanations are shown when the explained function 
    is called by the user. They can interact with the values of the explained function's actual 
    results to offer relevant, meaningful insights. The 'xplain' interpretations and explanations 
    are based on an easy-to-use XML format that allows to include R code to interact with the 
    returns of the explained function.
Tools for interactive data exploration built using 'shiny'. Includes apps for descriptive 
    statistics, visualizing probability distributions, inferential statistics, linear regression, 
    logistic regression and RFM analysis.
Provides a set of functions devoted to multivariate exploratory statistics on textual data. Classical methods such as correspondence analysis and agglomerative hierarchical clustering are available. Chronologically constrained agglomerative hierarchical clustering enriched with labelled-by-words trees is offered. Given a division of the corpus into parts, their characteristic words and documents are identified. Further, accessing to 'FactoMineR' functions is very easy. Two of them are relevant in textual domain. MFA() addresses multiple lexical table allowing applications such as dealing with multilingual corpora as well as simultaneously analyzing both open-ended and closed questions in surveys. See <http://xplortext.unileon.es> for examples.
Diagnostics for non-linear mixed-effects (population) 
    models from 'NONMEM' <https://www.iconplc.com/innovation/nonmem/>. 
    'xpose' facilitates data import, creation of numerical run summary 
    and provide 'ggplot2'-based graphics for data exploration and model 
    diagnostics.
Extension to 'xpose' to support 'nlmixr'. Provides functions to import 'nlmixr' fit data into an 'xpose' data object, allowing the use of 'xpose' for 'nlmixr' model diagnostics.
A model building aid for nonlinear mixed-effects 
    (population) model analysis using NONMEM, facilitating data set 
    checkout, exploration and visualization, model diagnostics, candidate 
    covariate identification and model comparison. The methods are described 
    in Keizer et al. (2013) <doi:10.1038/psp.2013.24>, and Jonsson et al. (1999) 
    <doi:10.1016/s0169-2607(98)00067-4>.
There is limited native support for external pointers in the R interface. 
    This package provides some basic tools to verify, create and modify 'externalptr' objects.
Support for interfaces from R to other languages,
    built around a class for evaluators and a combination of functions, classes and
    methods for communication. Will be used through a specific language interface
    package. Described in the book "Extending R".
Tools to analyze datasets previous to any statistical modeling.
    Has various functions designed to find inconsistencies and understanding the distribution of the data.
An implementation of the RuleFit algorithm as described in Friedman & Popescu 
  (2008) <doi:10.1214/07-AOAS148>. eXtreme Gradient Boosting ('XGBoost') is used 
  to build rules, and 'glmnet' is used to fit a sparse linear model on the raw and rule features. The result
  is a model that learns similarly to a tree ensemble, while often offering improved interpretability
  and achieving improved scoring runtime in live applications. Several algorithms for
  reducing rule complexity are provided, most notably hyperrectangle de-overlapping. All algorithms scale to 
  several million rows and support sparse representations to handle tens of thousands of dimensions.
A Julia interface structured according to the general
	     form described in package 'XR' and in the book "Extending R".
Fits hierarchical regularized regression models
    to incorporate potentially informative external data, Weaver and Lewinger (2019) <doi:10.21105/joss.01761>. 
    Utilizes coordinate descent to efficiently fit regularized regression models both with and without
    external information with the most common penalties used in practice (i.e. ridge, lasso, elastic net). 
    Support for standard R matrices, sparse matrices and big.matrix objects.
Digital repeat photography and near-surface remote sensing have been used by environmental scientists to study the environmental change for nearly a decade. However, a user-friendly, reliable, and robust platform to extract color-based statistics and time-series from a large stack of images is still lacking. Here, we present an interactive open-source toolkit, called 'xROI', that facilitate the process time-series extraction and improve the quality of the final data. 'xROI' provides a responsive environment for scientists to interactively a) delineate regions of interest (ROI), b) handle field of view (FOV) shifts, and c) extract and export time series data characterizing image color (i.e. red, green and blue channel digital numbers for the defined ROI). Using 'xROI', user can detect FOV shifts without minimal difficulty. The software gives user the opportunity to readjust the mask files or redraw new ones every time an FOV shift occurs. 'xROI' helps to significantly improve data accuracy and continuity.
A 'Python' interface structured according to the general
    form described in package 'XR' and in the book "Extending R".
This is a set of statistical quality control functions,  that allows plotting control charts and its iterations, process capability for variable and attribute control, highlighting the xrs_gr() function, like a first iteration for variable chart, meanwhile the we_rules() function detects non random patterns in sample.
An extension for the 'xml2' package to transform XML documents
    by applying an 'xslt' style-sheet.
The circadian period of a time series data is predicted and the statistical significance of the periodicity are calculated using the chi-square periodogram.
Builds generalized linear model with automatic data transformation. 
  The 'xspliner' helps to build simple, interpretable models that inherits informations provided by more complicated ones.
  The resulting model may be treated as explanation of provided black box, that was supplied prior to the algorithm.
Tools to download and merge data files on sub-national conflict, violence and protests from <http://www.x-sub.org>.
This is the tool set for crystallographer to design and analyze crystallization experiments, especially for ribosome from Mycobacterium tuberculosis.
The 'xtensor' C++ library for numerical analysis with
 multi-dimensional array expressions is provided as a header-only
 C++14 library. It offers an extensible expression system enabling
 lazy broadcasting; an API following the idioms of the C++ standard
 library; and tools to manipulate array expressions and build upon 'xtensor'.
Can be used for coloring output in terminals.
	It was developed for the standard Ubuntu terminal but should be compatible
	with any terminal using xterm or ANSI escape sequences. If run in windows,
	RStudio, or any other platform not supporting such escape sequences it
	gracefully passes on any output without modifying it.
Implemented is an algorithm to estimate the two-way fixed effect linear model. 
    The coefficients of interest are computed using the residuals from the 
    projection of all variables on the two sets of fixed effects. Our algorithm
    has three desirable features. First, it manages memory and computational 
    resources efficiently which speeds up the computation of the estimates. 
    Second, it allows the researcher to estimate multiple specifications 
    using the same set of fixed effects at a very low computational cost. 
    Third, the asymptotic variance of the parameters of interest can be 
    consistently estimated using standard routines on the residualized data. 
    Somaini P., Wolak F. A. (2016) <doi:10.1515/jem-2014-0008>
    Arellano, M. (1987) <https://ideas.repec.org/a/bla/obuest/v49y1987i4p431-34.html>.
Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Extends standard penalized regression (Lasso and Ridge) to allow differential shrinkage based on external information with the goal of achieving a better prediction accuracy. Examples of external information include the grouping of predictors, prior knowledge of biological importance, external p-values, function annotations, etc. The choice of multiple tuning parameters is done using an Empirical Bayes approach. A majorization-minimization algorithm is employed for implementation.
This is a collection of some useful functions when dealing with text data. 
    Currently it only contains a very efficient function of decoding HTML entities
    in character vectors by 'Rcpp' routine.
Calculates a number of valuation adjustments including CVA, DVA,
    FBA, FCA, MVA and KVA. A two-way margin agreement has been implemented. For
    the KVA calculation three regulatory frameworks are supported: CEM, (simplified) SA-CCR, OEM
	and IMM. The probability of default is implied through the credit spreads curve.
    Currently, only IRSwaps are supported. For more information, you can check
    one of the books regarding xVA: <http://www.cvacentral.com/books/credit-value-adjustment>.
Extrema-weighted feature extraction for varying length functional data. Functional data analysis method that performs dimensionality reduction based on predefined features and allows for quantile weighting. Method implemented as presented in van den Boom et al. (2018) <doi:10.1093/bioinformatics/bty120>.
A suite of psychometric analysis tools for research and operation, including:
    (1) computation of probability, information, and likelihood for the 3PL, GPCM, and GRM;
    (2) parameter estimation using joint or marginal likelihood estimation method;
    (3) simulation of computerized adaptive testing using built-in or customized algorithms;
    (4) assembly and simulation of multistage testing. 
    The full documentation and tutorials are at <https://github.com/xluo11/xxIRT>.
High dimensional interaction search by brute force requires a
    quadratic computational cost in the number of variables. The xyz algorithm provably finds strong interactions in almost linear time.
    For details of the algorithm see: G. Thanei, N. Meinshausen and R. Shah (2016). The xyz algorithm for fast interaction search in high-dimensional data <https://arxiv.org/pdf/1610.05108v1.pdf>.
Provides an alternative canonical correlation/redundancy
  analysis function, with associated print, plot, and summary methods.
  A method for generating helio plots is also included.
Procedures to perform consensus clustering starting from a dissimilarity matrix or a data matrix. It's allowed to select if the subsampling has to be by samples or features. In case of computational heavy load, the procedures can run in parallel.
Another implementation of general regression neural network in R
    based on Specht (1991) <DOI:10.1109/72.97934>. It is applicable to the 
    functional approximation or the classification.
Performs nearest neighbor-based imputation using one or more alternative 
 approaches to processing multivariate data. These include methods based on canonical 
 correlation analysis, canonical correspondence analysis, and a multivariate adaptation 
 of the random forest classification and regression techniques of Leo Breiman and Adele 
 Cutler. Additional methods are also offered. The package includes functions for 
 comparing the results from running alternative techniques, detecting imputation targets 
 that are notably distant from reference observations, detecting and correcting 
 for bias, bootstrapping and building ensemble imputations, and mapping results.
This is a simple wrapper for the yakmo K-Means library (developed by Naoki Yoshinaga, see http://www.tkl.iis.u-tokyo.ac.jp/~ynaga/yakmo/). It performs fast and robust (orthogonal) K-Means.
This collection of data exploration tools was developed at
    Yale University for the graphical exploration of complex
    multivariate data; barcode and gpairs now have their own
    packages.  The new big.read.table() provided here may be
    useful for large files when only a subset is needed.
Implements the 'libyaml' 'YAML' 1.1 parser and emitter
  (<http://pyyaml.org/wiki/LibYAML>) for R.
A YAML-based
 mechanism for working with table metadata. Supports
 compact syntax for creating, modifying, viewing, exporting,
 importing, displaying, and plotting metadata coded as column 
 attributes. The 'yamlet' dialect is valid 'YAML' with
 defaults and conventions chosen to improve readability. 
 See ?yamlet, ?decorate.data.frame and ?modify.default.
 See ?read_yamlet ?write_yamlet, ?io_csv, and ?ggplot.decorated.
Setting layout through 'YAML' headers in 'R-Markdown' documents,
    enabling their automatic generation.
    Functions and methods may summarize 'R' objects in automatic reports, for
    instance check-lists and further reports applied to the packages 'taxlist'
    and 'vegtable'.
Functionality to compute the projection median via several
 algorithms. This package also provides functions to plot different
 multivariate medians and multivariate quantiles in two-dimensional and
 three-dimensional data respectively. See Chen, F. and Nason, G.P. (2020)
 "A new method for computing the projection median, its influence curve
 and techniques for the production of projected quantile plots." PLOS One
 (accepted for publication).
Another implementation of probabilistic neural network in R
    based on Specht (1990) <DOI:10.1016/0893-6080(90)90049-Q>. It is applicable to the 
    pattern recognition with a N-level response, where N > 2.
Estimate tracks of animals tagged with acoustic transmitters. 'yaps' was introduced in 2017 as a transparent open-source tool to estimate positions of fish (and other aquatic animals) tagged with acoustic transmitters. Based on registrations of acoustic transmitters on hydrophones positioned in a fixed array, 'yaps' enables users to synchronize the collected data (i.e. correcting for drift in the internal clocks of the hydrophones/receivers) and subsequently to estimate tracks of the tagged animals. The paper introducing 'yaps' is available in open access at Baktoft, Gjelland, Økland & Thygesen (2017) <doi:10.1038/s41598-017-14278-z>. Also check out our cookbook with a completely worked through example at Baktoft, Gjelland, Økland, Rehage, Rodemann, Corujo, Viadero & Thygesen (2019) <DOI:10.1101/2019.12.16.877688>. Additional tutorials will eventually make their way onto the project website at <https://baktoft.github.io/yaps/>.
Tidy tools for quantifying how well model fits to a data set
    such as confusion matrices, class probability curve summaries, and
    regression metrics (e.g., RMSE).
A parser and a writer for 'WEKA' Attribute-Relation File Format
    <https://waikato.github.io/weka-wiki/arff_stable/> in pure R, with no dependencies. 
    As opposed to other R implementations, this package can read standard
    (dense) as well as sparse files, i.e. those where each row does only contain 
    nonzero components. Unlike 'RWeka', 'yarr' does not require any 'Java' installation
    nor is dependent on external software. This implementation is generalized from 
    those in packages 'mldr' and 'mldr.datasets'.
Contains a mixture of functions and data sets referred to in the introductory e-book "YaRrr!: The Pirate's Guide to R". The latest version of the e-book is available for free at <https://www.thepiratesguidetor.com>.
A collection of string functions designed for writing 
    compact and expressive R code. 'yasp' (Yet Another String Package) is simple,
    fast, dependency-free, and written in pure R. The package provides: a
    coherent set of abbreviations for paste() from package 'base' with a
    variety of defaults, such as p() for "paste" and pcc() for "paste and
    collapse with commas"; wrap(), bracket(), and others for wrapping a
    string in flanking characters; unwrap() for removing pairs of characters
    (at any position in a string); and sentence() for cleaning whitespace
    around punctuation and capitalization appropriate for prose sentences.
Provides functions to manage taxonomy when lineages
    are described with strings and ranks separated with special patterns
    like "|*__" or ";*__".
Determines the sum of squares of the (2^n)-1 factorial effects in a 2^n factorial experiment using Yates' algorithm.
Yield curve or zero-coupon prices interpolation and extrapolation using the Nelson-Siegel, Svensson, Smith-Wilson models, and Hermite cubic splines.
Asks Yes-No questions with variable or custom responses.
The purpose of this package is to provide methods to interpret multiple
  linear regression and canonical correlation results including beta weights,structure coefficients, 
  validity coefficients, product measures, relative weights, all-possible-subsets regression,
  dominance analysis, commonality analysis, and adjusted effect sizes.
Deploy, maintain, and invoke models via the Yhat
    REST API.
Modelling the yield curve with some parametric models.
        The models implemented are: Nelson-Siegel, Diebold-Li and
        Svensson.  The package also includes the data of the term
        structure of interest rate of Federal Reserve Bank and European
        Central Bank.
The clustering by k-means of using the target variable.
             To determine the number of clusters with the variance of 
             the target variable in the cluster.
Compute the standard expected years of life lost (YLL),
    as developed by the Global Burden of Disease Study
    (Murray, C.J., Lopez, A.D. and World Health Organization, 1996).
    The YLL is based on comparing the age of death to an external standard life
    expectancy curve. It also computes the average YLL, which highlights premature
    causes of death and brings attention to preventable deaths
    (Aragon et al., 2008).
Write 'YAML' front matter for R Markdown and related
    documents. Work with 'YAML' objects more naturally and write the
    resulting 'YAML' to your clipboard or to 'YAML' files related to your
    project.
Build 'shiny' applications with the latest Bootstrap components
    and design utilities. Includes refreshed reactive inputs and outputs.
    Use responsive layouts to design and construct applications for devices
    of all sizes.
Analyzing performances of cricketers and cricket teams
             based on 'yaml' match data from Cricsheet <https://cricsheet.org/>.
Although there exist some R packages tailored for YouTube API (e.g., 'tuber'), downloading YouTube video subtitle (i.e., caption) in a tidy form has never been a low-hanging fruit. Using 'youtube-transcript-api Python package' under the hood, this R package provides users with a convenient way of parsing and converting a desired YouTube caption into a handy 'tibble' data_frame object. Furthermore, users can easily save a desired YouTube caption data as a tidy Excel file without advanced programming background knowledge.
Longitudinal wages data sets and several demographic variables from the National Longitudinal Survey of Youth from 1979 to 2018. There are three data sets in this package: The wages data from the cohort whose highest grade completed is up to high school; The wages data of the high school dropouts and; The demographic data of the cohort in the survey year 1979.
Semiparametric modeling of lifetime data with crossing survival curves via Yang and Prentice model with baseline hazard/odds modeled with Bernstein polynomials. Details about the model can be found in Demarqui et al. (2019) <arXiv:1910.04475>. Model fitting can be carried out via both maximum likelihood and Bayesian approaches. The package also provides point and interval estimation for the crossing survival times.
For any spending function specified by the user, this 
    package provides corresponding boundaries for interim testing using
    the adaptively weighted log-rank test developed by Yang and Prentice
    (2010 <doi:10.1111/j.1541-0420.2009.01243.x>). 
    The package uses a re-sampling method to obtain stopping boundaries 
    at the interim looks.The output consists of stopping boundaries 
    and observed values of the test statistics at the interim looks, 
    along with nominal p-values defined as the probability of the test 
    exceeding the specific observed test statistic value or critical 
    value, regardless of the test behavior at other looks. 
    The asymptotic validity of the stopping boundaries is established
    in Yang (2018 <doi:10.1002/sim.7958>).
Inference procedures accommodate a flexible range of hazard ratio patterns with a two-sample semi-parametric model. This model contains the proportional hazards model and the proportional odds model as sub-models, and accommodates non-proportional hazards situations to the extreme of having crossing hazards and crossing survivor functions. Overall, this package has four major functions: 1) the parameter estimation, namely short-term and long-term hazard ratio parameters; 2) 95 percent and 90 percent point-wise confidence intervals and simultaneous confidence bands for the hazard ratio function; 3) p-value of the adaptive weighted log-rank test; 4) p-values of two lack-of-fit tests for the model. See the included "read_me_first.pdf" for brief instructions. In this version (1.1), there is no need to sort the data before applying this package.
Semiparametric modeling of lifetime data with crossing survival curves via Yang and Prentice model with piecewise exponential baseline distribution. Details about the model can be found in Demarqui and Mayrink (2019) <arXiv:1910.02406>. Model fitting carried out via likelihood-based and Bayesian approaches. The package also provides point and interval estimation for the crossing survival times.
An implementation of equilibrium-based yield per recruit
    methods.  Yield per recruit methods can used to estimate the optimal
    yield for a fish population as described by Walters and Martell (2004)
    <isbn:0-691-11544-3>.  The yield can be based on the number of fish
    caught (or harvested) or biomass caught for all fish or just large
    (trophy) individuals.
An extension for 'NetSurfP-2.0' (Klausen et al. (2019) <doi:10.1002/prot.25674>)
    which is specifically designed to analyze the results of bottom-up-proteomics that is
    primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) <doi:10.1038/nbt.1511>).
    This tool is designed to process a large number of yeast peptides that produced as a
    results of whole yeast cell-proteome digestion and provide a coherent picture of
    secondary structure of proteins.
Miscellaneous functions for data analysis, portfolio management, graphics, data manipulation, statistical investigation, including descriptive statistics, creating leading and lagging variables, portfolio return analysis, time series difference and percentage change calculation, stacking data for higher efficient analysis.
Simulation and Inference for SDEs and Other Stochastic Processes.
Provides a graphical user interface for the 'yuima' package.
Miscellaneous functions commonly used by 'YuLab-SMU'.
Provides a number of functions to facilitate
  extracting information in 'YAML' fragments from one or 
  multiple files, optionally structuring the information
  in a 'data.tree'. 'YAML' (recursive acronym for "YAML ain't
  Markup Language") is a convention for specifying structured
  data in a format that is both machine- and human-readable.
  'YAML' therefore lends itself well for embedding (meta)data
  in plain text files, such as Markdown files. This principle
  is implemented in 'yum' with minimal dependencies (i.e. only
  the 'yaml' packages, and the 'data.tree' package can be
  used to enable additional functionality).
Yummly.com is one of the world's largest and most powerful recipe search sites and this package aims to provide R bindings for publicly available Yummly.com Recipe API (https://developer.yummly.com/).
Provides simple statistics from instruments and observations at sites in the NEON network, and acts as a simple interface for v0 of the National Ecological Observatory Network (NEON) API.
  Statistics are generated for meteorologic and soil-based observations, and are presented for daily, annual, and one-time observations at all available NEON sites.
  Users can also retrieve any dataset publicly hosted by NEON. Metadata for NEON sites and data products can be returned, as well as information on data product availability by site and date. 
  For more information on NEON, please visit <https://www.neonscience.org>. For detailed data product information, please see the NEON data product catalog at <https://data.neonscience.org/data-product-catalog>.
A suite of statistics for identifying areas of the genome under selective pressure. See Jacobs, Sluckin and Kivisild (2016) <doi:10.1534/genetics.115.185900>.
Interface to the 'ZooBank' API (<http://zoobank.org/Api>) client.
    'ZooBank' (<http://zoobank.org/>) is the official registry of zoological 
    nomenclature. Methods are provided for using each of the API endpoints, 
    including for querying by author, querying for publications, get 
    statistics on 'ZooBank' activity, and more.
Principled methods for the imputation of zeros, left-censored and missing data in
    compositional data sets (Palarea-Albaladejo and Martin-Fernandez (2015) <doi:10.1016/j.chemolab.2015.02.019>).
An implementation of z-curves - a method for estimating expected discovery 
    and replicability rates on the bases of test-statistics of published studies. The package 
    provides functions for fitting the new density and EM version 
    (Bartoš & Schimmack, 2020, <doi:10.31234/osf.io/urgtn>) as well as the original density 
    z-curve (Brunner & Schimmack, 2020, <doi:10.15626/MP.2018.874>). Furthermore, the package 
    provides summarizing and plotting functions for the fitted z-curve objects. See the 
    aforementioned articles for more information about the z-curves, expected discovery 
    and replicability rates, validation studies, and limitations.
Facilitates making a connection to the 
  'Zendesk' API and executing various queries. You can use it to
  get ticket data and ticket metrics. The 'Zendesk' documentation is 
  available at <https://developer.zendesk.com/rest_api
  /docs/support/introduction>. This package is not supported by 
  'Zendesk' (owner of the software).
Provides a %<-% operator to perform multiple,
    unpacking, and destructuring assignment in R. The 
    operator unpacks the right-hand side of an assignment
    into multiple values and assigns these values to 
    variables on the left-hand side of the assignment.
R package accompanying the book Working with dynamic models for agriculture and environment, by Daniel Wallach (INRA), David Makowski (INRA), James W. Jones (U.of Florida), Francois Brun (ACTA). 3rd edition 2018-09-27.
Implements the estimation of local (and global) association measures: Ducher's Z, pointwise mutual information, normalized pointwise mutual information and chi-squared residuals. The significance of local (and global) association is accessed using p-values estimated by permutations. Finally, using local association subgroup analysis, it identifies if the association between variables is dependent on the value of another variable.
Use behavioural variables to compute period, rhythmicity and other circadian parameters.
  Methods include computation of chi square periodograms (Sokolove and Bushell (1978) <DOI:10.1016/0022-5193(78)90022-X>),
  Lomb-Scargle periodograms (Lomb (1976) <DOI:10.1007/BF00648343>, Scargle (1982) <DOI:10.1086/160554>, Ruf (1999) <DOI:10.1076/brhm.30.2.178.1422>),
  and autocorrelation-based periodograms.
A framework that brings together an abundance of common
    statistical models found across packages into a unified interface, and
    provides a common architecture for estimation and interpretation, as well
    as bridging functions to absorb increasingly more models into the
    package. Zelig allows each individual package, for each
    statistical model, to be accessed by a common uniformly structured call and
    set of arguments. Moreover, Zelig automates all the surrounding building
    blocks of a statistical work-flow--procedures and algorithms that may be
    essential to one user's application but which the original package
    developer did not use in their own research and might not themselves
    support. These include bootstrapping, jackknifing, and re-weighting of data.
    In particular, Zelig automatically generates predicted and simulated
    quantities of interest (such as relative risk ratios, average treatment
    effects, first differences and predicted and expected values) to interpret
    and visualize complex models.
Provides an Interface to 'Zenodo' (<https://zenodo.org>) REST API, 
  including management of depositions, attribution of DOIs by 'Zenodo' and 
  upload and download of files.
This package provides an R wrapper for the Zendesk API
Graphical tools for visualizing high-dimensional data along a path
 of alternating one- and two-dimensional plots. Note that this
 includes interactive graphics plots based on 'loon' in turn based on 'tcltk'
 (included as part of the standard R distribution).  It also requires 'graph' from Bioconductor.
 For more detail on use and algorithms, see <doi:10.18637/jss.v095.i04>.
Uses bootstrap to test zero order correlation being equal to a 
    partial or semi-partial correlation (one or two tailed). Confidence 
    intervals for the parameter (zero order minus partial) can also be
    determined. Implements the bias-corrected and accelerated bootstrap
    method as described in "An Introduction to the Bootstrap" Efron (1983) 
    <0-412-04231-2>.
Functions to compute compositional turnover using zeta-diversity,
    the number of species shared by multiple assemblages. The package includes
    functions to compute zeta-diversity for a specific number of
    assemblages and to compute zeta-diversity for a range of numbers of
    assemblages. It also includes functions to explain how zeta-diversity
    varies with distance and with differences in environmental variables
    between assemblages, using generalised linear models, linear models
    with negative constraints, generalised additive models,shape
    constrained additive models, and I-splines.
Performs Zoom-Focus Algorithm (ZFA) to optimize testing regions for rare variant association tests in exome sequencing data.
The goal of 'zfit' is to improve the usage of basic model fitting
    functions within a piped work flow, in particular when passing
    and processing a data.frame using 'dplyr' or similar packages.
The method zGPS.AO (Zero Inflated Gamma Poisson Shrinker with AE 
    (Adverse Event) ontology) is based on the zero-inflated negative binomial 
    distribution. 
    It estimates the association between a specific vaccine and an adverse event 
    group, as well as associations between that vaccine and individual adverse 
    events within the adverse event group. This model handles the adverse event 
    count data with excess zeros and over-dispersion, and it allows borrowing 
    information from adverse event data in the same group. Details can be found 
    in  "Data Mining in Large Frequency Tables With Ontology, with an Application 
    to the Vaccine Adverse Event Reporting System." 
    Bangyao Zhao, Lili Zhao (2020) <arXiv:2010.12471>.
Microbiome count data (Operational Taxonomic Unit, OTUs) is usually overdispersed and has excessive zero counts. The 'ZIBBSeqDiscovery' assumes a zero-inflated beta-binomial model for the distribution of the count data, and employes link functions to adjust interested covariates. To fit the model, two approaches are proposed (i) a free approach which treats the overdispersion parameters for OTUs as independent, and (ii) a constrained approach which proposes a mean-overdispersion relationship to the count data. This package can be used to test the association between the composition of the microbiome counts and the interested covariates.
Detects abundance differences across clinical conditions. Besides, it takes the sparse nature of metagenomic data into account and handles compositional data efficiently.
Provides MCMC algorithms for the analysis of
        zero-inflated count models. The case of stochastic search
        variable selection (SVS) is also considered.  All MCMC samplers
        are coded in C++ for improved efficiency. A data set
        considering the demand for health care is provided.
Zillow, an online real estate company, provides real estate and
    mortgage data for the United States through a REST API. The ZillowR package
    provides an R function for each API service, making it easy to make API
    calls and process the response into convenient, R-friendly data structures.
    See <http://www.zillow.com/howto/api/APIOverview.htm> for the Zillow API
    Documentation.
Analyze count time series with excess zeros. 
    Two types of statistical models are supported: Markov regression by Yang et al.
    (2013) <doi:10.1016/j.stamet.2013.02.001> and state-space models by Yang et al. 
    (2015) <doi:10.1177/1471082X14535530>. They are also known as observation-driven and 
    parameter-driven models respectively in the time series literature. The functions used for 
    Markov regression or observation-driven models can also be used to fit ordinary regression models 
    with independent data under the zero-inflated Poisson (ZIP) or zero-inflated negative binomial (ZINB) 
    assumption. Besides, the package contains some miscellaneous functions to compute density, distribution, 
    quantile, and generate random numbers from ZIP and ZINB distributions.
Cross-Platform 'zip' Compression Library. A replacement
    for the 'zip' function, that does not require any additional
    external tools on any platform.
Some data treated by the Japanese R user require
    unique operations and processing. These are caused by address, Kanji,
    and traditional year representations. 'zipangu' transforms specific
    to Japan into something more general one.
Implementation of zero-inflated Poisson models under Bayesian framework using data augmentation as discussed in Chapter 5 of Zhang (2020) <https://hdl.handle.net/10012/16378>. This package is constructed in accommodating four different scenarios: the general scenario, the scenario with measurement error in responses, the external validation scenario, and the internal validation scenario.
Make working with ZIP codes in R painless with an integrated dataset of U.S. ZIP codes and functions for working with them. 
             Search ZIP codes by multiple geographies, including state, county, city & across time zones. Also included are functions for relating
             ZIP codes to Census data, geocoding & distance calculations.
Estimation methods for zero-inflated Poisson factor analysis (ZIPFA) on sparse data. 
    It provides estimates of coefficients in a new type of zero-inflated regression. 
    It provides a cross-validation method to determine the potential rank of the data in the ZIPFA 
    and conducts zero-inflated Poisson factor analysis based on the determined rank.
Implementation of four extensions of the Zipf distribution: the Marshall-Olkin 
  Extended Zipf (MOEZipf) Pérez-Casany, M., & Casellas, A. (2013) <arXiv:1304.4540>, the Zipf-Poisson Extreme (Zipf-PE), the 
  Zipf-Poisson Stopped Sum (Zipf-PSS) and the Zipf-Polylog distributions. 
  In log-log scale, the two first extensions allow for top-concavity 
  and top-convexity while the third one only allows for top-concavity. 
  All the extensions maintain the linearity associated with the Zipf model in the tail.
Statistical models and utilities for the analysis of word frequency distributions.
	The utilities include functions for loading, manipulating and visualizing word frequency
	data and vocabulary growth curves.  The package also implements several statistical 
	models for the distribution of word frequencies in a population.  (The name of this package 
	derives from the most famous word frequency distribution, Zipf's law.)
Fit zero-inflated Poisson hidden (semi-)Markov models with or without covariates by directly minimizing the negative log likelihood function using the gradient descent algorithm. Multiple starting values should be used to avoid local minima.
Implements Python-style zip for R. Is a more flexible version of cbind.
Generates a data frame of US zip codes and their distance to the given zip code when given a starting 
  zip code and a radius in miles. Also includes functions for use with 'choroplethrZip' which are detailed in
  the vignette.
Permutations tests to identify factor correlated to zero-inflated proportions response. Provide a performance indicator based on Spearman correlation to quantify the part of correlation explained by the selected set of factors. See details for the method at the following preprint e.g.: <https://hal.archives-ouvertes.fr/hal-02936779v3>.
This function produces empirical best linier unbiased predictions (EBLUPs) for Zero-Inflated data and its Relative Standard Error. Small Area Estimation with Zero-Inflated Model (SAE-ZIP) is a model developed for Zero-Inflated data that can lead us to overdispersion situation. To handle this kind of situation, this model is created. The model in this package is based on Small Area Estimation with Zero-Inflated Poisson model proposed by Dian Christien Arisona (2018)<https://repository.ipb.ac.id/handle/123456789/92308>. For the data sample itself, we use combination method between Roberto Benavent and Domingo Morales (2015)<doi:10.1016/j.csda.2015.07.013> and Sabine Krieg, Harm Jan Boonstra and Marc Smeets (2016)<doi:10.1515/jos-2016-0051>.
Transformation of laboratory measurements into z or z(log)-value
    based on given or empirical reference limits as proposed in
    Hoffmann et al. 2017 <doi:10.1515/labmed-2016-0087>.
Calculate and plot scattering matrix coefficients for plane waves at interface.
Fits beta regression and zero-or-one inflated beta regression and obtains Bayesian Inference of the model via the Markov Chain Monte Carlo approach implemented in JAGS.
Fits Dirichlet regression and zero-and-one inflated Dirichlet regression with Bayesian methods implemented in Stan. These models are sometimes referred to as trinomial mixture models; covariates and overdispersion can optionally be included.
'Zoltar' <https://www.zoltardata.com/> is a website that provides a repository of model forecast results
    in a standardized format and a central location. It supports storing, retrieving, comparing, and analyzing time
    series forecasts for prediction challenges of interest to the modeling community. This package provides functions
    for working with the 'Zoltar' API, including connecting and authenticating, getting information about projects,
    models, and forecasts, deleting and uploading forecast data, and downloading scores.
Create new analysis setups and deal with results of 
    Zonation conservation prioritization software <https://github.com/cbig/zonation-core>. 
    This package uses data available in the 'zdat' (7.7 MB) package 
    for building the vignettes.
Functions, documentation and example data to help divide
    geographic space into discrete polygons (zones).
    The functions are motivated by research into the merits of different zoning systems
    <doi:10.1068/a090169>. A flexible 'ClockBoard' zoning system is
    provided, which breaks-up space by concentric rings
    and radial lines emanating from a central point.
    By default, the diameter of the rings grow according the triangular number sequence
    <doi:10.1080/26375451.2019.1598687> with the first 4 'doughnuts'
    (or 'annuli') measuring 1, 3, 6, and 10 km wide.
    These annuli are subdivided into equal segments (12 by default), creating the
    visual impression of a dartboard. Zones are labelled according to
    distance to the centre and angular distance from North, creating a simple
    geographic zoning and labelling system useful for visualising geographic
    phenomena with a clearly demarcated central location such as cities.
An S3 class with methods for totally ordered indexed
             observations. It is particularly aimed at irregular time series
             of numeric vectors/matrices and factors. zoo's key design goals
             are independence of a particular index/date/time class and
             consistency with ts and base R by providing methods to extend
             standard generics.
The analysis and inference of faunal remains recovered from
    archaeological sites concerns the field of zooarchaeology. The zooaRch package
    provides analytical tools to make inferences on zooarchaeological data.
    Functions in this package allow users to read, manipulate, visualize, and
    analyze zooarchaeological data.
A free (open source) solution for analyzing digital
  images of plankton. In combination with ImageJ, a free image analysis
  system, it processes digital images, measures individuals, trains for
  automatic classification of taxa, and finally, measures plankton samples
  (abundances, total and partial size spectra or biomasses, etc.).
Includes functions and reference data to 
    generate and manipulate log-ratios (also known as log size index (LSI)
    values) from measurements obtained on zooarchaeological material. Log
    ratios are used to compare the relative (rather than the absolute)
    dimensions of animals from archaeological contexts 
    (Meadow 1999, ISBN: 9783896463883).
    zoolog is also able to seamlessly integrate data and references 
    with heterogeneous nomenclature, which is internally managed by a 
    zoolog thesaurus. 
    A preliminary version of the zoolog methods was first used by 
    Trentacoste, Nieto-Espinet, and Valenzuela-Lamas (2018) 
    <doi:10.1371/journal.pone.0208109>.
zm(), called with any active plot allow to enter an
    interactive session to zoom/navigate any plot. The development
    version, as well as binary releases can be found at
    https://github.com/cbarbu/R-package-zoom
Provides utilities for processing and analyzing the files that are exported from a recorded 'Zoom' Meeting. This includes analyzing data captured through video cameras and microphones, the text-based chat, and meta-data. You can analyze aspects of the conversation among meeting participants and their emotional expressions throughout the meeting.
Reproducible and remixable species distribution modelling.
    The package reads user submitted modules from an online repository, runs
    full species distribution modelling workflows and returns output that is
    fully reproducible. For examples and detailed discussion refer to: N.Golding
    et al. (2017) 'The zoon r package for reproducible and shareable species
    distribution modelling'. Methods in Ecology and Evolution.
    <doi:10.1111/2041-210X.12858>. The package 'SDMTools' is used for testing
    and, though this package is archived, you can access it here if 
    needed, <https://cran.r-project.org/src/contrib/Archive/SDMTools/>.
Combines a forecast of a time series, using the function forecast(), with the dynamic plots from dygraphs.
A tool for calculating z-scores and centiles for weight-for-age, 
    length/height-for-age, weight-for-length/height, BMI-for-age, 
    head circumference-for-age, age circumference-for-age, 
    subscapular skinfold-for-age, triceps skinfold-for-age based on the 
    WHO Child Growth Standards.
Generates well-known integer sequences. 'gmp' package is adopted for computing with arbitrarily large numbers. Every function has hyperlink to its corresponding item in OEIS (The On-Line Encyclopedia of Integer Sequences) in the function help page. For interested readers, see Sloane and Plouffe (1995, ISBN:978-0125586306).
Makes zebra-striped tables (tables with alternating row colors)
    in LaTeX and HTML formats easily from a data.frame, matrix, lm, aov, anova,
    glm, coxph, nls, fitdistr, mytable and cbind.mytable objects.
Functions for obtaining the density, random variates
             and maximum likelihood estimates of the Zero-truncated Poisson lognormal
             distribution and their mixture distribution.
Read '.xls' and '.sbj' files which are written by the
   Microsoft Windows program 'z-Tree'. The latter is a software for
   developing and carrying out economic experiments
   (see <http://www.ztree.uzh.ch/> for more information).
How fast can you type R functions on your keyboard? Find out by running a 'zty.pe' game: export R functions as instructions to type to destroy opponents vessels.
Stein control variates can be used to improve Monte Carlo estimates of expectations when the derivatives of the log target are available. This package implements a variety of such methods, including zero-variance control variates (ZV-CV, Mira et al. (2013) <doi:10.1007/s11222-012-9344-6>), regularised ZV-CV (South et al., 2018 <arXiv:1811.05073>), control functionals (CF, Oates et al. (2017) <doi:10.1111/rssb.12185>) and semi-exact control functionals (SECF, South et al., 2020 <arXiv:2002.00033>). ZV-CV is a parametric approach that is exact for (low order) polynomial integrands with Gaussian targets. CF is a non-parametric alternative that offers better than the standard Monte Carlo convergence rates. SECF has both a parametric and a non-parametric component and it offers the advantages of both for an additional computational cost. Functions for applying ZV-CV and CF to two estimators for the normalising constant of the posterior distribution in Bayesian statistics are also supplied in this package. The basic requirements for using the package are a set of samples, derivatives and function evaluations.
Contains an efficient implementation of Sen's slope method (Sen, 1968) plus implementation of Xuebin Zhang's (Zhang, 1999) and Yue-Pilon's (Yue, 2002) prewhitening approaches to determining trends in climate data.
A minor collection of HTTP wrappers for the 'Zamzar File Conversion'
    API. The wrappers makes it easy to utilize the API and thus convert
    between more than 100 different file formats (ranging from audio files,
    images, movie formats, etc., etc.) through an R session.  
    For specifics regarding the API, please see <https://developers.zamzar.com/>.
Functions and datasets for bootstrapping from the
book "Bootstrap Methods and Their Application" by A. C. Davison and
D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.
Various functions for classification, including k-nearest
neighbour, Learning Vector Quantization and Self-Organizing Maps.
Methods for Cluster analysis.  Much extended the original from
Peter Rousseeuw, Anja Struyf and Mia Hubert,
based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".
Reading and writing data stored by some versions of
'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka',
and for reading and writing some 'dBase' files.
Functions for kernel smoothing (and density estimation)
corresponding to the book:
Wand, M.P. and Jones, M.C. (1995) "Kernel Smoothing".
A powerful and elegant high-level data visualization
system inspired by Trellis graphics, with an emphasis on
multivariate data. Lattice is sufficient for typical graphics needs,
and is also flexible enough to handle most nonstandard requirements.
See ?Lattice for an introduction.
Functions and datasets to support Venables and Ripley,
"Modern Applied Statistics with S" (4th edition, 2002).
A rich hierarchy of matrix classes, including triangular,
symmetric, and diagonal matrices, both dense and sparse and with
pattern, logical and numeric entries.   Numerous methods for and
operations on these matrices, using 'LAPACK' and 'SuiteSparse' libraries.
Generalized additive (mixed) models, some of their extensions and
other generalized ridge regression with multiple smoothing
parameter estimation by (Restricted) Marginal Likelihood,
Generalized Cross Validation and similar, or using iterated
nested Laplace approximation for fully Bayesian inference. See
Wood (2017) <doi:10.1201/9781315370279> for an overview.
Includes a gam() function, a wide variety of smoothers, 'JAGS'
support and distributions beyond the exponential family.
Software for feed-forward neural networks with a single
hidden layer, and for multinomial log-linear models.
Recursive partitioning for classification,
regression and survival trees.  An implementation of most of the
functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.
Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Many approaches for both reading and
creating XML (and HTML) documents (including DTDs), both local
and accessible via HTTP or FTP.  Also offers access to an
'XPath' "interpreter".
Please send bug reports to ismrp@jasp.ism.ac.jp.
Please send questions and comments to etiennead@gmail.com.
Please send questions and comments regarding pbdR to
RBigData@gmail.com
Please send bug reports to ismrp@jasp.ism.ac.jp
Please send questions and comments to wccsnow@gmail.com
Please send questions and comments about Rcpp to
rcpp-devel@lists.r-forge.r-project.org
Please send questions and comments regarding RInside to
rcpp-devel@lists.r-forge.r-project.org
Raja Sekhara Reddy D.M <raja.duvvuru@gmail.com>
Dane R. Van Domelen <vandomed@gmail.com>
Renata T C Yokota <renatayokota@gmail.com>
Pedro Rafael Diniz Marinho <pedro.rafael.marinho@gmail.com>
Carlos J. Gil Bellosta <cgb@datanalytics.com>
Achmad Fauzi Bagus F <fauzi.pandya@gmail.com>
Cesar de Oliveira Ferreira Silva <cesaroliveira.f.silva@gmail.com>
Berent Ånund Strømnes Lunde <lundeberent@gmail.com>
Jose Roberto Ayala Solares <ichbinjras@gmail.com>
Miguel Angelo Lellis Moreira <miguellellis@hotmail.com>
Mohamed El Fodil Ihaddaden <ihaddaden.fodeil@gmail.com>
Pierre Lafaye De Micheaux <lafaye@unsw.edu.au>
Rafael H. M. Pereira <rafa.pereira.br@gmail.com>
Robin K. S. Hankin <hankin.robin@gmail.com>
Gabriel F. R. Vasconcelos <gabrielrvsc@yahoo.com.br>
Pedro Nascimento de Lima <pedrolima.n@gmail.com>
Pierre Lafaye de Micheaux <lafaye@unsw.edu.au>
Edwin Javier Castillo Carreño <edjcastilloca@unal.edu.co>
Stephanie van der Pas <s.l.vanderpas@amsterdamumc.nl>
Ricardo de Matos Simoes <ricardo_dematossimoes@dfci.harvard.edu>
Karel Van den Meersche <karel.van_den_meersche@cirad.fr>
Blondeau Da Silva Stephane <Stephane.Blondeau-Da-Silva@ac-limoges.fr>
Luiz Antonio de Jesus Rocha <luiz.rocha@unifesp.br>
Anderson Rodrigo da Silva <anderson.agro@hotmail.com>
Ana Belen Nieto Librero <ananieto@usal.es>
Ricardo Puziol de Oliveira <rpuziol.oliveira@gmail.com>
Rafael de Andrade Moral <rafael.deandrademoral@mu.ie>
Andrey Duvan Rincon Torres <adrincont@unal.edu.co>
Guillaume Kon Kam King <guillaume.konkamking.work@gmail.com>
David Alejandro Martell Juarez <alex91599@gmail.com>
Jianzhao Gao and Xiaodan Fan <gaojz@nankai.edu.cn>
A. Jonathan R. Godfrey <a.j.godfrey@massey.ac.nz>
Rahim Alhamzawi  (University of Al-Qadisiyah) <rahim.alhamzawi@qu.edu.iq>
José Carlos Soage González <jsoage@uvigo.es>
Sy Han (Steven) Chiou <schiou@hsph.harvard.edu>
Francisco H. C. de Alencar <hildemardealencar@gmail.com>
Ivo Van Walle Developer <ivo.van.walle@gmail.com>
Ting Fung (Ralph) Ma <tingfung.ma@wisc.edu>
Luis Alfonso Perez Martos <lapm0001@gmail.com>
L. A. van der Ark <L.A.vanderArk@uva.nl>
Francesca Marta Lilja Di Lascio <marta.dilascio@unibz.it>
M. A. J. Zondervan-Zwijnenburg <m.a.j.zwijnenburg@uu.nl>
K. Gerald van den Boogaart <support@boogaart.de>
P. Lafaye de Micheaux <lafaye@unsw.edu.au>
José Manuel Monroy Kuhn <nolozz@gmail.com>
Wim Van der Elst <Wim.vanderelst@gmail.com>
Sjoerd van der Spoel <R@sjoerdvanderspoel.nl>
Jonas M. B. Haslbeck <jonas.haslbeck@gmail.com>
James A. Fellows Yates <jfy133@gmail.com>
Ernst van der Maaten <ernst.vandermaaten@gmail.com>
Carl A. B. Pearson <carl.pearson@lshtm.ac.uk>
Eduardo L. T. Conceicao <mail@eduardoconceicao.org>
Ricardo Daniel Marques Salgado <ricardodansalgado@gmail.com>
Philippe J.S. De Brouwer <philippe@de-brouwer.com>
Sean A. S. Anderson <seanas.anderson@mail.utoronto.ca>
Marcelino de la Cruz Rot <marcelino.delacruz@urjc.es>
Pedro H. C. Sant'Anna <pedro.h.santanna@vanderbilt.edu>
Don van den Bergh <donvdbergh@hotmail.com>
Kaique dos S. Alves <kaiquedsalves@gmail.com>
Alexandre Adalardo de Oliveira <ecovirtualpackage@gmail.com>
Mirrelijn M. van Nee <m.vannee@amsterdamumc.nl>
Hector Roux de Bezieux <hector.rouxdebezieux@berkeley.edu>
Ardo van den Hout <Ardo.vandenHout@ucl.ac.uk>
Matheus H. J. Saldanha <mhjsaldanha@gmail.com>
Jesús María Méndez Pérez <jesus.mendez@ticarum.es>
Manuel Oviedo de la Fuente <manuel.oviedo@usc.es>
Caíque de Oliveira de Souza <forestgrowthsoftware@gmail.com>
Clayton Vieira Fraga Filho <forestgrowthsoftware@gmail.com>
Eduardo San Miguel Martin
<eduardo.san.miguel.martin@gmail.com>
Nina M. D. Schiettekatte <nina.schiettekatte@gmail.com>
Agnese Maria Di Brisco <agnese.dibrisco@unimib.it>
"Vincent ten Cate, PhD" <vincent10kd@gmail.com>
Helgem de Souza Ribeiro Martins <helgem.souza@gmail.com>
Shaiful Anuar Abu Bakar <saab@um.edu.my>
Juan Pablo Marin Diaz <jpmarindiaz@gmail.com>
Diego Alonso Alarcon Diaz <diego.alarcondiaz@gmail.com>
Teun van den Brand <tahvdbrand@gmail.com>
Vincent T van Hees <v.vanhees@accelting.com>
Xavier Fernández i Marín <xavier.fim@gmail.com>
Caspar J. van Lissa <c.j.vanlissa@uu.nl>
Kevin Allan Sales Rodrigues <kevin.asr@outlook.com>
Geraldine Van der Auwera <vdauwera@broadinstitute.org>
Joseph Emile Honour Percival <ipercival@gmail.com>
Anders Gonçalves da Silva <andersgs@gmail.com>
Martijn van de Pol <martijn@myscience.eu>
Rafael de Andrade Moral <rafael_moral@yahoo.com.br>
Stephanie van der Pas <svdpas@math.leidenuniv.nl>
Austrian Institute of Technology <hyrim@ait.ac.at>
Sai Thein Than Tun <theinthantun.sai@gmail.com>
Marcelino de la Cruz <marcelino.delacruz@urjc.es>
Luiz Eduardo S. Gomes <gomes.leduardo@gmail.com>
Eufrasio de A. Lima Neto <eufrasio@de.ufpb.br>
Luiz Henrique Keng Queiroz Junior <keng@ufg.br>
Tharindu P. De Alwis <mktharindu87@siu.edu>
Tri Ha Minh Nguyen <tringuyen_2023@depauw.edu>
Kleber Morais de Sousa <kleberfinancas@gmail.com>
Alejandro Quintela del Rio <aquintela@udc.es>
Thiago de Paula Oliveira <thiago.paula.oliveira@alumni.usp.br>
Javier De La Hoz Maestre <jdelahozmaestre@gmail.com>
Danilo Roberti Alves de Almeida <daniloflorestas@gmail.com>
Jose Manuel Gomez Caceres <josemanuel.gomezc@edu.uah.es>
Jesús M. Rodríguez Rodríguez <jesusmro@ono.com>
Javier Royuela del Val <jroyval@lpi.tel.uva.es>
Rosineide Fernando da Paz <rfpaz2@gmail.com>
"Antoine Tremblay, Statistics Canada" <trea26@gmail.com>
Rune Haubo Bojesen Christensen <Rune.Haubo@gmail.com>
Vito M. R. Muggeo <vito.muggeo@unipa.it>
Jan van der Laan <djvanderlaan@unrealizedtime.nl>
"Robin K. S. Hankin" <hankin.robin@gmail.com>
Jorge L. C. Musaja <musajajorge@gmail.com>
Elizabeth Holmes - NOAA Federal <eli.holmes@noaa.gov>
Euloge C. Kenne Pagui <kenne@stat.unipd.it>
Fernando Ferraz do Nascimento <fernandofn@ufpi.edu.br>
Antonio Hermes M. da Silva-Junior <hermes@ccet.ufrn.br>
Manuel David Peris Diaz <manuel.perisdiaz@uwr.edu.pl>
Caspar J. van Lissa <c.j.vanlissa@gmail.com>
Alysha M De Livera <alyshad@unimelb.edu.au>
João Victor Gomes de Araujo Santana <jvg.santana@gmail.com>
Stephen L R Ellison <s.ellison@lgcgroup.com>
Héctor Manuel Sánchez Castellanos <sanchez.hmsc@berkeley.edu>
Bruno André Rodrigues coelho <bruno@brodrigues.co>
Ludwig Kian Soon Hoon <ldwgkshoon@gmail.com>
Krishna Harsha K H <khkrishnaharsha123@gmail.com>
Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
L. Andries van der Ark <L.A.vanderArk@uva.nl>
Mark A. van de Wiel <mark.vdwiel@amsterdamumc.nl>
Hannah De los Santos <hdelossantos653@gmail.com>
Sebastian J. Teran Hidalgo <sebastianteranhidalgo@gmail.com>
Eliot J B McIntire <eliot.mcintire@canada.ca>
Niels van der Velden <n.s.j.vandervelden@gmail.com>
T. R. dos Santos <thiagords@est.ufmg.br>
Julio Cesar Hernandez Sanchez <juliocesar_avila@usal.es>
Daiane Marcolino de Mattos <daiane.mattos@fgv.br>
Carlos de la Calle-Arroyo <carlos.calle.arroyo@gmail.com>
José María Martínez Otzeta <josemaria.martinezo@ehu.eus>
Rune Haubo Bojesen Christensen <rune.haubo@gmail.com>
Joao Pedro Oliveira dos Santos <joaopsantos@pm.me>
Bruno do Rosario Petrucci <petrucci@iastate.edu>
Wouter van der Bijl <wouter@zoology.ubc.ca>
Euloge Clovis Kenne Pagui <kenne@stat.unipd.it>
Joaquin Bienvenido Ordieres Mere <j.ordieres@upm.es>
Marieke van der Maaten-Theunissen <marieke.theunissen@tu-dresden.de>
Gualberto Segundo Agamez Montalvo <gsagamez@gmail.com>
Paul van der Laken <paulvanderlaken@gmail.com>
Mijael Rodrigo Vargas Godoy <mirovago@gmail.com>
Thaís de Bessa Gontijo de Oliveira <thais.bgo@gmail.com>
Juan Carlos Gonçalves Dosantos <juan.carlos.goncalves@udc.es>
Blondeau Da Silva Stephane <blondeaudasilva@xlim.fr>
Robbie C.M. van Aert <R.C.M.vanAert@tilburguniversity.edu>
Peter J. van der Most <p.j.van.der.most@umcg.nl>
Wagner Santos de Lima <wagnersantos.ufs@hotmail.com>
"Shingo Yamamoto (gloops, Inc.)" <si.yamamoto@gloops.com>
Maria de los Angeles Resa <maria@stat.columbia.edu>
Gabriel de Siqueira Gesteira <gdesiqu@ncsu.edu>
Achmad Fauzi Bagus F <uzi.fauz@gmail.com>
Manuel A. Mosquera Rodríguez <mamrguez@uvigo.es>
Katherine A. L. Valeriano <katandreina@gmail.com>
Juan A. Ferrer-Bonsoms Developer <jafhernandez@tecnun.es>
Pedro Mac Dowell Innecco <dmu@pedroinnecco.com>
Christian Alexander Mongeau Ospina <christian+rpkg-repec@mongeau.net>
Peter van den Berg <peter_v_d_berg@hotmail.com>
Sy Han (Steven) Chiou <schiou@utdallas.edu>
Jose Miguel Cotes Torres <jmcotes@unal.edu.co>
Manuel de Francisco Vera <manueldefrancisco@gmail.com>
Raymond K. W. Wong <raymondkww.dev@gmail.com>
Maria del Carmen Calatrava Moreno
<mc.calatrava.moreno@gmail.com>
Md Riaz Ahmed Khan <mdriazahmed.khan@jacks.sdstate.edu>
Pedro Rafael D. Marinho <pedro.rafael.marinho@gmail.com>
Manuel David Peris Diaz <madape@alumni.uv.es>
Mohammad Hadi Foroughmand Araabi <foroughmand@gmail.com>
Brazil Data Cube Team <brazildatacube@inpe.br>
J. Antonio Guzmán Q. <antguz06@gmail.com>
Titus von der Malsburg <malsburg@posteo.de>
Rutger M. van den Bor <r.m.vandenbor@umcutrecht.nl>
Laercio Junio da Silva <laerciojdsilva@gmail.com>
Lucas van der Meer <luukvandermeer@live.nl>
M. Yoga Satria Utama <221709801@stis.ac.id>
Niels J. de Winter <niels.de.winter@vub.be>
Prof. Juan David Velasquez H. <jdvelasq@unal.edu.co>
Jose Manuel Vera Oteo <vera.josemanuel@gmail.com>
Willem Robert van Hage <willem.van.hage@synerscope.com>
Jonas Gregorio de Souza <jonas.gregorio@gmail.com>
Francisco Jesús Palomares Alabarce <fpalomares@correo.ugr.es>
Stephen A Sefick Jr. <ssefick@gmail.com>
Vinicius Quintas Souto Maior <vinicius@de.ufpe.br>
Daniel A. Dos Santos <pseudalopex_79@yahoo.com>
Jesus Maria Rodriguez Rodriguez <jesusmro@gmail.com>
Gabriel Henrique Oliveira Assuncao <gabrielhenryoliver@hotmail.com>
K. Gerald van den Boogaart <boogaart@math.tu-freiberg.de>
Almut E. D. Veraart <a.veraart@imperial.ac.uk>
Silvestre Garcia de Jalon <s.garciadejalon@gmail.com>
Hafiz Zain Ul Haq <zainalibajwa4u@yahoo.com>
Antonio Fabio Di Narzo <antonio.fabio@gmail.com>
Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>
Eraldo B. dos Anjos Filho <ebdaf1@de.ufpe.br>
Henrique Jose de Paula Alves <jpahenrique@gmail.com>
Luis D. Verde Arregoitia <luis@liomys.mx>
Oscar Alberto Quijano Xacur <oscar.quijano@use.startmail.com>
Angel Garcia de la Garza <agarciadlg@gmail.com>
"James P. Howard, II" <jh@jameshoward.us>
Giulio Valentino Dalla Riva <me@gvdallariva.net>
Joerg Schlarmann (aka Produnis) <schlarmann@produnis.de>
Olivier M. F. Martin <oliviermfmartin@tutanota.com>
'agricolae' is a package name 'ggplot2' is a package name
Department of Mathematics and Statistics, University of
Agriculture Faisalabad, Faisalabad-Pakistan.
Package 'rjags' requires JAGS executabe file (compatiable
version) should be already installed.
Maintainers are not available to give advice on using a package
they did not author.
This version is a generalisation for (v=wnl) treatments. In the
version 1.0 we used rectangular right angular (m) association
schemes with (v=2nl) and m=4,5 and 7 associated classes. The
Association schemes used in this R-package are : Rectangular
association scheme; Generalized rectangular right angular
association scheme (4); Generalized rectangular right angular
association scheme (5); Generalized rectangular right angular
association scheme (7).
One minimum cost flow problem may have several or many solutions
that are equivalent in providing the same minimum total or mean
cost. Minor differences between computers or implementations
may have the minor consequence of altering which equivalent
solution is produced.
This publication was prepared for NCES under Contract No.
ED-IES-12-D-0002 with the American Institutes for Research.
Mention of trade names, commercial products, or organizations
does not imply endorsement by the U.S. Government.
Supported by internal research project ING01-1516 from
'Universidad de Playa Ancha'
The author obtained financial resources as part of financing the
doctoral scholarship from the Polish National Science Centre
(DEC-2018/28/T/HS4/00095).
Research funded by the Polish National Science Centre grant under
the contract number DEC-2015/19/N/HS4/00205.
The header file blaswrap.h, f2c.h and fgsg.h are from the
VisualStudio library created by Julie Langou.
Few parts are still preliminary and might be changed in the near
future. And more functions will be add as easier tools to
higher efficiency in analyzing.
While reporting issues on github start subject line with
[cran-package]
The authors are grateful to Mikhail Kanevski, Federico Amato and
Luciano Telesca for many fruitful discussions about the use and
the application of Fisher-Shannon method.
This software comes with NO warranty! It is NOT intended to be
used in clinical applications! For evaluation only!
The package is also based on the discussion
https://stats.stackexchange.com/questions/168964/building-a-regression-tree-with-r-from-scratch/168967#168967
research product of the RISCOPE project (ANR, project
No.16CE04-0011) <https://perso.math.univ-toulouse.fr/riscope/>.
Department of Genetics and Plant Breeding, University of
Agricultural Sciecnes, Dharwad.
Package 'R2jags' requires JAGS executable file installed
The authors are grateful to Mikhail Kanevski, Michael
Leuenberger, Carmen D. Vega Orozco and Fabian Guignard for many
fruitful discussions about the use of intrinsic dimension in
data mining.
Please, cite this package as: Marina Saez (2021). KarsTS: An
Interface For Microclimate Time Series Analysis. R package
version 2.4.1.
Department of Statistics, Bahauddin Zakariya University, Multan,
Pakistan.
Department of Statistics, Bahauddin Zakariya University, Multan,
Pakistan
The originale code was in matlab, see details below.
The developer version of 'keras' should be used, rather than the
CRAN version. The latter will cause tests to fail on an initial
run, but work on subsequent tries. To avoid this, use
devtools::install_github("rstudio/keras"). The user also must
have an installation of 'Python 3'.
For convenience, the package includes the necessary header files
for the Eigen distribution. (This is all that is needed to use
that functionality.) You can use an alternative installation of
Eigen on your system or the one we provide. The license for the
Eigen code is very permissive and allows us to distribute it
with this package. See <http://eigen.tuxfamily.org/index.php?
title=Main_Page> and also the License section on that page.
The APT samplers within this package were adapted from MCMC
samplers provided in the NIMBLE package
(https://github.com/nimble-dev/nimble) and developed by the
cited members of the NIMBLE Development Team. The adaptations
for APT included in this package were the work of the package
developer. Many thanks to the NIMBLE Development Team for their
support during the development of this package.
The current version (0.4.2) fixes a numerical issue with
symmetric implementation of the paco_links function.
In order to use this package you need your personal Project Vote
Smart API key. To get an API-key you need to sign up for access
to PVS' API (see http://votesmart.org/share/api for details).
Whenever you are using pvsR make sure that your personal PVS
API key is saved as a character string in the variable pvs.key
(pvs.key <- "yourkey"). If there is no valid PVS API key saved
in the variable pvs.key the functions in this package won't
work. This program is free software; you can redistribute it
and/or modify it under the terms of the GNU General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later
version. This program is distributed in the hope that it will
be useful, but WITHOUT ANY WARRANTY; without even the implied
warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the GNU General Public License for more details.
For details and derivation, see Braumoeller, Bear F. "Guarding
Against False Positives in Qualitative Comparative Analysis."
Forthcoming, Political Analysis.
Package is in active development; please report errors and
suggestions to rchlumsk@uwaterloo.ca.
NOTICE regarding the transfer of data from Retrosheet: The
information used here was obtained free of charge from and is
copyrighted by Retrosheet. Interested parties may contact
Retrosheet at "www.retrosheet.org".
See http://www.json.org/JSON_checker/test.zip for tests. We now
use code from the libjson project
(http://libjson.sourceforge.net).
The development of this package was supported by Carlos
Jaramillo, Center for Tropical Paleoecology and Archaeology at
Smithsonian Tropical Research Institute.
This publication was prepared for NCES under Contract No.
ED-IES-12-D-0009/0005 with Sanametrix and Westat. Mention of
trade names, commercial products, or organizations does not
imply endorsement by the U.S. Government.
The GPU computing version can be found soon, on following url
https://sites.google.com/site/mohamedlaibwebpage/Software.
revised for compliance with CRAN by K.Pal and C.M.Livi
The author acknowledges financial support from Sao Paulo Research
Foundation (FAPESP) grant 2016/18599-4
This is experimental software distributed free of charge and
comes with no warranty!  Exercise professional caution.
Package TSE works directly from the data set – no hand
calculations required.  Just upload a properly structured data
set (see TESTNUMB and its documentation), properly input column
names (see examples in the functions documentation), and run
your functions.
'TSEind' is a companion package to 'TSE'. Both calculate TSE for
your surveys, but use 'TSEind' if your surveys and the "gold
standard" survey have independent samples, and use 'TSE' if
your surveys and the "gold standard" survey have paired
samples.
'TSEwgt' is a companion package to 'TSE'. Each package calculates
TSE, but the former for multiple, different surveys, and the
latter for a single survey under multiple, different weighting
schemes.
This publication was prepared for NCES under Contract No.
ED-IES-12-D-0002 with American Institutes for Research. Mention
of trade names, commercial products, or organizations does not
imply endorsement by the U.S. government.
2018-03-13 21:10:22 UTC; Steven Harris Ranney
2021-12-04 12:57:38 UTC; Javaria Ahamd Khan
2020-09-22 06:18:07 UTC; Benjamin Schlegel
2012-06-11 14:36:21 UTC; Sophie Baillargeon
2021-11-28 13:38:57 UTC; Javaria Ahamd Khan
2021-06-02 08:00:33 UTC; Christian Blötner
2021-10-28 09:19:48 UTC; Sebastian Weirich
2021-11-10 11:00:58 UTC; Sebastian Weirich
2020-02-13 05:58:54 UTC; Michael Kellermann
2018-05-10 17:12:26 UTC; Virasakdi's Surface
2020-07-14 07:43:10 UTC; Bernardo Sousa Pinto
2020-01-21 06:35:23 UTC; Md. Tofazzal Hossain
2018-10-24 16:05:44 UTC; Ashutosh Srivastava
2015-02-26 17:45:29 UTC; Sophie Baillargeon
2015-08-23 02:08:23 UTC; Fernando de Villar
2021-03-23 14:30:28 UTC; Christian Blötner
2020-08-24 13:32:49 UTC; Eleanor Pullenayegum
2020-01-08 09:11:00 UTC; Nadezda Spiridovska
2021-04-16 08:59:10 UTC; Ilias Moutsopoulos
2021-07-12 03:13:21 UTC; Guillaume Boucher
2018-04-29 13:45:20 UTC; Alberto Vico Moreno
2021-07-08 00:26:50 UTC; Gonzalo Vazquez-Bare
2021-05-19 16:05:34 UTC; Gonzalo Vazquez-Bare
2017-01-03 15:34:03 UTC; Guybrush Threepwood
2019-05-02 03:37:50 UTC; hernandez michael
2018-12-13 11:53:36 UTC; Pedro Albuquerque
2020-05-07 11:07:40 UTC; Kanhaiiya Agrawal
2020-06-08 13:17:19 UTC; Kanhaiiya Agrawal
2018-06-05 15:09:00 UTC; Daniel Lewandowski
2021-10-05 02:02:03 UTC; PRABRISHA RAKSHIT
2019-08-02 17:03:10 UTC; Bernardo Sousa Pinto
2017-08-15 05:32:43 UTC; Aurnov Chattopadhyay
2016-03-19 23:54:53 UTC; Sophie Baillargeon
Image Magick (for reading non PPM format), dcraw
(for reading RAW images).
ADMIXTOOLS suite of command-line utilities for
population genetics. See
<https://reich.hms.harvard.edu/software> for the most recent
installation instructions and further information.
Alfresco Content Repository (Community or
Enterprise)
Python (>= 3.5.0), (Python) Altair (>= 4.0.0). To
use image functions, i.e. suggests: nodejs (> 8), and for
MacOS: X11
None, but greater than 12 GB of RAM highly
recommended.
ImageMagick (http://imagemagick.org) or
GraphicsMagick (http://www.graphicsmagick.org) or LyX
(http://www.lyx.org) for saveGIF(); (PDF)LaTeX for saveLatex();
SWF Tools (http://swftools.org) for saveSWF(); FFmpeg
(http://ffmpeg.org) or avconv (https://libav.org/avconv.html)
for saveVideo()
The exact (anti)clustering algorithms require that
the GNU linear programming kit (GLPK library) is installed
(<http://www.gnu.org/software/glpk/>). Rendering the vignette
requires pandoc.
C++11, libarchive: libarchive-dev (deb),
libarchive-devel (rpm), libarchive (homebrew), libarchive_dev
(csw)
C++11; for AWS S3 support on Linux, libcurl and
openssl (optional)
FFmpeg (>= 3.2); with at least libx264 and lame
(mp3) drivers. Debian/Ubuntu: libavfilter-dev, Fedora/CentOS:
ffmpeg-devel (via https://rpmfusion.org), MacOS Homebrew:
ffmpeg.
AWS Java SDK (see README.md for more details)
JAGS (>= 3.4.0) (see
http://mcmc-jags.sourceforge.net)
GNU make, Cargo (>= 1.42.0) [the Rust package
manager] for installation from sources: see file INSTALL
Rtools (>= 3.3) for Windows, Xcode (>= 9.0) for Mac
OS X
Preferred genomic operations engine: 'BEDTools',
'BEDOPS' and 'Tabix (>= 1.3)'.
JAGS >=4.3.0 <http://mcmc-jags.sourceforge.net/>,
Java JDK >=1.4 <https://www.java.com/en/download/manual.jsp>
Julia (>= 1.5), Bigsimr.jl, Distributions.jl
Package 'bigsnpr' includes a few functions that
wrap existing software such as 'PLINK'
<www.cog-genomics.org/plink2>. Functions are provided to
download these software. Note that these external software
might not work for some operating systems (e.g. 'PLINK' might
not work on Solaris).
A system with a recent-enough C++11 compiler (such
as g++-4.8 or later).
Hugo (<https://gohugo.io>) and Pandoc
(<https://pandoc.org>)
LaTeX(texi2dvi) must be present in the system to
create PDF reports
OpenBUGS (>= 3.2.2), hence Windows or Linux
C++11, pandoc (>= 1.12.3, needed for vignettes)
'Microsoft Visual Code', 'Rtools' on 'Windows',
'gdb' or 'lldb' depending on which OS
MAGeCK (=0.51, from
http://sourceforge.net/p/mageck/wiki/Home/), bowtie2
(http://bowtie-bio.sourceforge.net/bowtie2/index.shtml)
FFTW (>=3.3.1); possible package: fftw-devel (rpm),
libfftw3-dev (deb) or fftw (brew).
Python and TensorFlow are needed for Bayesian
inference computations; Python (>= 2.7.0) with header files and
shared library; TensorFlow (= v1.14;
https://www.tensorflow.org/); TensorFlow Probability (= v0.7.0;
https://www.tensorflow.org/probability/)
Cargo (>= 1.51) for installation from sources: see
INSTALL file
gsl (with development libraries libgsl-dev)
pandoc (to create a clinical data review report)
xclip (https://github.com/astrand/xclip) or xsel
(http://www.vergenet.net/~conrad/software/xsel/) for accessing
the X11 clipboard
libarmadillo: apt-get install -y libarmadillo-dev
(deb), libblas: apt-get install -y libblas-dev (deb),
liblapack: apt-get install -y liblapack-dev (deb),
libarpack++2: apt-get install -y libarpack++2-dev (deb),
gfortran: apt-get install -y gfortran (deb), libgmp3: apt-get
install -y libgmp3-dev (deb), libfftw3: apt-get install -y
libfftw3-dev (deb), libtiff5: apt-get install -y libtiff5-dev
(deb)
MOSEK (http://www.mosek.com) and MOSEK License for
use of Rmosek
libcurl: libcurl-devel (rpm) or
libcurl4-openssl-dev (deb).
ImageMagick++: ImageMagick-c++-devel (rpm) or
libmagick++-dev (deb)
Julia (>= 0.6.0), Convex.jl, SCS.jl, ECOS.jl
awscli: apt install -y awscli (deb), aws-configure:
aws configure (deb)
pdfcrop (part of TexLive) is required to rebuild
the vignettes.
Java (>= 7.0); Stanford CoreNLP
<http://nlp.stanford.edu/ software/corenlp.shtml> (>= 3.5.2)
couchDB instance to connect to and work with.
Java version 8 or higher (https://www.java.com/)
pandoc (>= 2.0; https://pandoc.org), git, whoami
none, one or more of JAGS (>= 3.0.0), WinBUGS (>=
1.4), OpenBUGS (>= 3.2.2), Stan
OpenSSL(>= 1.0.1), NVIDIA CUDA GPU with compute
capability 3.0 or above and NVIDIA CUDA Toolkit 9.0 or above
GLPK library package (e.g., libglpk-dev on
Debian/Ubuntu)
FreeType, Xft, or zlib (only needed for platforms
other than OSX and Windows)
Julia (>= 1.5), DifferentialEquations.jl,
ModelingToolkit.jl
Python (>= 2.7.0), TensorFlow
(https://www.tensorflow.org/)
libpq >= 9.0: libpq-dev (deb) or postgresql-devel
(rpm)
LibreOffice (<https://www.libreoffice.org/>)
required to extract data from .doc files or perform .pptx
conversion.
'unrar' (Linux/macOS) or '7-Zip' (Windows) to work
with '.rar' files, GDAL (>= 3.0.2), GEOS (>= 3.8.0), PROJ (>=
6.2.1)
Requires the OpenMP library for parallel computing.
If the OpenMP library is not available, the code is executed
sequentially and a warning is printed.
Python (>= 2.7 or >= 3.5) and elex package
The function render() requires Pandoc
(http://pandoc.org). To use PGP/GnuPG encryption requires gpg.
Generally, fastText builds on modern Mac OS and
Linux distributions. Since it uses some C++11 features, it
requires a compiler with good C++11 support. These include a
(g++-4.7.2 or newer) or a (clang-3.3 or newer).
fftw3 (libfftw3-dev (deb), or fftw-devel (rpm))
Display resolution >= 1280x800; RAM >= 4GB
libarmadillo: apt-get install -y libarmadillo-dev
(deb), libblas: apt-get install -y libblas-dev (deb),
liblapack: apt-get install -y liblapack-dev (deb),
libarpack++2: apt-get install -y libarpack++2-dev (deb),
gfortran: apt-get install -y gfortran (deb)
GNU Scientific Library (GSL). Note: users should
have GSL installed.
(license-free) MATLAB Runtime (MCR) V 9.6, Java
(>=8)
Python (>= 2.4), difflib, fuzzywuzzy ( >=0.15.0 ),
python-Levenshtein ( >=0.12.0 ). Detailed installation
instructions for each operating system can be found in the
README file.
Debian or Ubuntu system with access to Goto Blas,
Intel MKL, Atlas development build as well as a Nvidia GPU with
CUDA support
C++11, pandoc (>=1.12.3, needed for vignettes)
The SequenomMarkers() marker design function
requires 'vcftools' and 'Perl' on 'windows', and, in addition,
'awk' and 'bash' on '*nix'.
libarmadillo: apt-get install -y libarmadillo-dev
(deb)
MongoDB (>= 3.4.0), Python (>= 2.7). Installation
instructions and links can be found in the README file.
libgit2 (>= 0.26): libgit2-devel (rpm) or
libgit2-dev (deb)
By default, git2r uses a system installation of the
libgit2 headers and library. However, if a system installation
is not available, builds and uses a bundled version of the
libgit2 source. zlib headers and library. OpenSSL headers and
library (non-macOS). LibSSH2 (optional on non-Windows) to
enable the SSH transport.
GPGME: libgpgme-dev (deb), gpgme-devel (rpm) gpgme
(brew). On Linux 'haveged' is recommended for generating
entropy when using the GPG key generator.
Python (>= 2.7.0) with header files and shared
library; TensorFlow (v1.14; https://www.tensorflow.org/);
TensorFlow Probability (v0.7.0;
https://www.tensorflow.org/probability/)
Python (>= 3.6) with header files and shared
library; H2O4GPU (https://github.com/h2oai/h2o4gpu)
Apache Hadoop >= 2.7.2
(https://hadoop.apache.org/releases.html#Download); Obsolete:
Hadoop core >= 0.19.1 and <= 1.0.3 or CDH3
(https://www.cloudera.com); standard unix tools (e.g., chmod)
C++17, libpng, cairo, freetype2, fontconfig
LaTeX packages: adjustbox, array, calc, caption,
colortbl, fontspec, graphicx, hhline, hyperref, multirow,
siunitx, tabularx, threeparttable, ulem, wrapfig
Julia (>= 1.0) and Interpretable AI System Image
(>= 1.0.0)
ImageMagick (http://imagemagick.org) or
GraphicsMagick (http://www.graphicsmagick.org)
A C library with the fesetround/fegetround
functions.
gmp (optional), libxml2 (optional), glpk (optional)
C++11 and OpenCV 3 or newer: libopencv-dev (Debian,
Ubuntu) or opencv-devel (Fedora)
Impala driver to support a 'DBI'-compatible R
interface
pandoc (https://pandoc.org/) and phantomjs
(https://phantomjs.org/)
pandoc (to export an interactive summary table to a
file)
jupyter, jupyter_kernel_test (Python package for
testing)
libjq: jq-devel (rpm) or libjq-dev (deb)
A compiler that conforms to the C++17 standard
Optional: libsecret on Linux (libsecret-1-dev on
Debian/Ubuntu, libsecret-devel on Fedora/CentOS)
MOSEK (http://www.mosek.com) and MOSEK license.
Package vignettes based on R Markdown v2 or
reStructuredText require Pandoc (http://pandoc.org). The
function rst2pdf() require rst2pdf
(https://github.com/rst2pdf/rst2pdf).
procps (linux), ps (macos), wmic (windows)
ImageJ (>=1.48), ij.jar (see
http://imagej.nih.gov/ij/), Java (>=1.6.0)
libxml2: libxml2-dev (deb), libxml2-devel (rpm)
JAGS (>= 3.0.0) (see
http://mcmc-jags.sourceforge.net)
At least trial version of LocalSolver to be
downloaded from http://www.localsolver.com/download.html
C++11, A system with zoneinfo data (e.g.
/usr/share/zoneinfo). On Windows the zoneinfo included with R
is used.
Python 3.x with following modules: PyGMO, NumPy,
and cloudpickle
ADMB version 11 <http://admb-project.org/> for
use.admb=TRUE; see readme.txt
On a Unix-alike, one of the C functions
mach_absolute_time (macOS), clock_gettime or gethrtime. If none
of these is found, the obsolescent POSIX function gettimeofday
will be tried.
memory (>= 4GB) Ubuntu: build-essential,
libxml2-dev, libssl-dev, libcurl4-openssl-dev Windows: Rtools
(>= 3.5)
TensorFlow (https://www.tensorflow.org), Keras
(https://keras.io), TensorFlow Probability
(https://www.tensorflow.org/probability)
A C++11 compiler. Versions 4.8.*, 4.9.* or later of
GCC will be fine.
gdal (optional), geos (optional), proj (optional),
udunits (optional), gsl (optional), gmp (optional), glu
(optional), jags (optional), mpfr (optional), openmpi
(optional)
JAGS (>= 4.0.0) (see
http://mcmc-jags.sourceforge.net)
libcurl: libcurl-devel (rpm) or
libcurl4-openssl-dev (deb)
A valid account MUST be registered with Microsoft's
Cognitive Services website
<https://www.microsoft.com/cognitive-services/> in order to
obtain a (free) API key. Without an API key, this package will
not work properly.
pandoc, jupyter, jupyter nbconvert ("nbconvert"
python package), pywin32 (on windows)
neo4j - http://www.neo4j.com, cypher-shell -
https://github.com/neo4j/cypher-shell/releases
Python (>= 3.0.0), Neptune (https://neptune.ai/)
A compiler with C++11 support for the thread
library, Requires Rtools >= 33 (i.e. R >= 3.3.0) to build on
Windows.
A system installation of NLopt >= 2.4.0 (with
headers) will be used if available.
NetLogo (>= 5.3.1), Java (JDK 1.8), pandoc,
OpenSSL, udunits-2, PROJ.4, GEOS, GDAL, libxml2
python3-dev: apt-get install -y python3-dev (deb),
python3-pip: apt-get install -y python3-pip (deb), numpy: pip3
install numpy (deb), scipy: pip3 install scipy (deb), nmslib:
pip3 install --no-binary :all: nmslib (deb)
JAGS (http://mcmc-jags.sourceforge.net/) for
analysis of Bayesian hierarchical models
PhantomJS (http://phantomjs.org) for taking
screenshots
C++11, GNU make, An ODBC3 driver manager and
drivers.
GNU make, pandoc (>= 1.12.3), pandoc-citeproc
OpenCV 3 or newer: libopencv-dev (Debian, Ubuntu)
or opencv-devel (Fedora)
libarmadillo: apt-get install -y libarmadillo-dev
(deb), libblas: apt-get install -y libblas-dev (deb),
liblapack: apt-get install -y liblapack-dev (deb),
libarpack++2: apt-get install -y libarpack++2-dev (deb),
gfortran: apt-get install -y gfortran (deb), libjpeg-dev:
apt-get install -y libjpeg-dev (deb), libpng-dev: apt-get
install -y libpng-dev (deb), libfftw3-dev: apt-get install -y
libfftw3-dev (deb), libtiff5-dev: apt-get install -y
libtiff5-dev (deb)
To use the Localhost of OSRM, you need to build
OSRM
<https://github.com/Project-OSRM/osrm-backend/wiki/Building-OSRM>
locally
Python (>= 3.0.1); bencode-python3 (1.0.2)
pandoc (https://johnmacfarlane.net/pandoc) for
exporting markdown files to other formats.
For the MERLIN wrapper, MERLIN
(http://csg.sph.umich.edu/abecasis/Merlin/) must be installed
and pointed to in the PATH environment variable.
MERLIN
(http://csg.sph.umich.edu/abecasis/merlin/index.html) for
multipoint linkage analysis.
The 'Japanese.Rnw' vignette requires uplatex and
dvipdfmx.
OpenMPI (>= 1.5.4) on Solaris, Linux, Mac, and
FreeBSD. MS-MPI (Microsoft MPI v7.1 (SDK) and Microsoft HPC
Pack 2012 R2 MS-MPI Redistributable Package) on Windows.
Linux, Mac OSX, and Windows, or 'ZeroMQ' library >=
4.0.4. Solaris 10 needs 'ZeroMQ' library 4.0.7 and 'OpenCSW'.
'Microsoft' 'PowerShell'
(<https://docs.microsoft.com/en-us/powershell/>), 'Microsoft'
'Power BI' (<https://powerbi.microsoft.com>)
Poppler C++ API: libpoppler-cpp-dev (deb) or
poppler-cpp-devel (rpm). The unit tests also require the
'poppler-data' package (rpm/deb)
Phoenix NLME with Phoenix Modeling Language (PML)
license
OpenSSL library and headers (openssl-dev or
similar)
aria2: apt-get install -y aria2 (deb), gdal-bin:
apt-get install -y gdal-bin (deb), libgdal-dev: apt-get install
-y libgdal-dev (deb)
libssh >= 0.6.0 (the original, not libssh2)
For Windows users, Rtools (see
https://cran.r-project.org/bin/windows/Rtools/).
PROJ (>= 4.8.0, https://proj.org/download.html) and
GDAL (>= 1.11.4, https://gdal.org/download.html).
pandoc (>= 1.12.3) -
http://johnmacfarlane.net/pandoc
JAGS (>= 3.2.0) (see
http://mcmc-jags.sourceforge.net)
A POSIX system. Currently Linux and OS X are known
to work. GNU make.
proj 4.4.6 or higher (http://proj.maptools.org/)
pandoc (http://pandoc.org) for building Vignettes
and output reports as HTML
'python3' needs to built for the same architecture
R is built for (32 or 64 bit).
Quarto command line tools
(https://github.com/quarto-dev/quarto-cli).
OpenBugs for functions bugs() and openbugs() or
WinBUGS 1.4 for function bugs()
C++11, freetype2, libpng, libtiff, libjpeg
package manual requires pandoc (>= 1.14)
http://pandoc.org
python >= 2.6, by default rasciidoc uses a system
installation of asciidoc. If a system installation of asciidoc
is not available, it downloads the sources from
(<http://gitlab.com/asciidoc>). GNU source-highlight is
recommended.
Java JRE 1.6 or higher ; Xuggle-xuggler-5.4.jar in
library paths and class paths.
A valid Bloomberg installation. The API headers and
dynamic library are downloaded from
<https://github.com/Rblp/blp> during the build step. See
<https://bloomberg.github.io/blpapi-docs/cpp/3.8> as well as
<https://www.bloomberg.com/professional/support/api-library/>
for API documentation. A compiler recent enough for (at least
partial) C++11 support is required; g++-4.6.* or later should
be sufficient and g++-4.9.* or later is preferred.
MOSEK (http://www.mosek.com) and MOSEK License for
use of Rmosek,
GMP (GNU MP bignum library from
<https://gmplib.org/>)
A 64-bit POSIX OS such as Linux or OS X with IANA
time zone data in /usr/share/zoneinfo as well as a
recent-enough C++11 compiler (such as g++-4.9 or later which is
preferred, g++-4.8 works too). On Windows the zoneinfo included
with R is used; and time parsing support is enabled via a
backport of std::get_time from the LLVM libc++ library.
GNU make, ncurses, pcre (>= 7 < 10), GLib (>=
2.0.0). On Windows, no prior installations are necessary, as
pre-built (i.e. cross-compiled) binaries of required libraries
are downloaded from a GitHub repository
(<https://github.com/PolMine/libcl>) during installation. On
macOS, static libraries of Glib are downloaded
(<https://github.com/PolMine/libglib>) if Glib is not present.
A POSIX system. Currently Linux and OS X are known
to work.
MeCab 0.996 (or mecab-ko 0.9.2) or higher, GNU make
GNU make, Intel TBB, Windows: cmd.exe and
cscript.exe, Solaris: g++ is required
An available hiredis library (eg via package
libhiredis-dev on Debian/Ubuntu, hiredis-devel on
Fedora/RedHat, or directly from source from
<https://github.com/redis/hiredis>) is preferred but otherwise
built on demand.
A C++11 compiler; g++ (>= 4.9.*) or newer works.
Python (>= 3.0), retriever (>= 3.0.0) (version must
be listed to patch to allow parsing)
GNU GSL for the GSL random-number generators
mono 4.x or higher on OSX / Linux, .NET 4.x or
higher on Windows, 'msbuild' and 'nuget' available in the path
Subversion for install_svn, git for install_git
Presentations written in (R)Markdown require Pandoc
(http://pandoc.org).
'unrar' (Linux/macOS) or '7-Zip' (Windows) to work
with '.rar' files.
Rust 'cargo'; the crate 'libR-sys' must compile
without error
PROJ (>= 4.8.0, https://proj.org/download.html) and
GDAL (>= 1.11.4, https://gdal.org/download.html), with versions
either (A) PROJ < 6 and GDAL < 3 or (B) PROJ >= 6 and GDAL >=
3. For degraded PROJ >= 6 and GDAL < 3, use the configure
argument '--with-proj_api="proj_api.h"'.
GEOS (>= 3.2.0); for building from source: GEOS
from https://libgeos.org; GEOS OSX frameworks built by William
Kyngesburye at http://www.kyngchaos.com/ may be used for source
installs on OSX.
Python (>= 3.6), rgf_python, scikit-learn (>=
0.18.0), scipy, numpy. Detailed installation instructions for
each operating system can be found in the README file.
OpenGL, GLU Library, XQuartz (on OSX), zlib
(optional), libpng (>=1.2.9, optional), FreeType (optional),
pandoc (>=1.14, needed for vignettes; if not present, markdown
package will be used)
Maxima (https://sourceforge.net/projects/maxima/,
tested with versions >=5.42.1), needs to be on PATH
Java JDK 1.2 or higher (for JRI/REngine JDK 1.4 or
higher), GNU make
Java JDK 1.7 or higher,Apache Kafka 2.8.0-0.8.1.1
C++11, cmake (>= 3.10), clang (optional), CUDA
(optional but recommended)
libmariadb-client-lgpl-dev or libmariadb-dev or
libmysqlclient-dev, with libssl-dev (deb),
mariadb-connector-c-devel or mariadb-devel (rpm),
mariadb-connector-c or mysql-connector-c (brew)
notepad.exe, mark.exe (>= 8.0) (or mark32.exe and
mark64.exe) and rel_32.exe (see README.txt)
pandoc (>=1.14, needed for the vignette)
gmp (>= 4.2.3), mpfr (>= 3.0.0), pdfcrop (part of
TexLive) is required to rebuild the vignettes.
libmariadb-client-dev | libmariadb-client-lgpl-dev
| libmysqlclient-dev (deb), mariadb-devel (rpm), mariadb |
mysql-connector-c (brew), mysql56_dev (csw)
The tools to run 'R CMD SHLIB' on 'Fortran' code.
The used 'Fortran' compiler must support pointer initialization
which is a feature of the 2008 standard. The compiler from
Oracle Developer Studio 12.6 on Solaris 10 currently does not
meet this requirement.
roger-base (for interface functions only)
GNU Make, GCC Compiler Suite (C and Fortran)
Oracle Instant Client or Oracle Database Client
Poppler Glib interface headers and libraries
(<http://poppler.freedesktop.org/>) [Debian/Ubuntu:
libpoppler-glib-dev, Fedora: poppler-glib-devel]
C++11, GNU make, Windows: cmd.exe and cscript.exe
ProtoBuf libraries and compiler version 2.2.0 or
later; version 3.0.0 or later is supported as well. On
Debian/Ubuntu these can be installed as libprotoc-dev,
libprotobuf-dev and protobuf-compiler, while on Fedora/CentOS
protobuf-devel and protobuf-compiler are needed.
A user API key (which one can request from the
website at <http://www.pushbullet.com>), and one or more
devices to push messages to which may be any one of an (Android
or iOS) phone, a (Chrome or Firefox, or Opera or Safari)
browser or the (Windows or Mac) desktop application provided
the corresponding Pushbullet 'app' has been installed on any
one of these.
QuantLib library (>= 1.14) from
http://quantlib.org, Boost library from http://www.boost.org
The package depends on libraries from the RRD
project <http://oss.oetiker.ch/rrdtool/>. On Debian-based
systems, install 'librrd-dev', on CentOS based systems install
'rrdtool-devel', and on Fedora-based systems install
'rrdtool-devel'
<https://apps.fedoraproject.org/packages/rrdtool-devel>. For
more information, see the README.
need the RDRAND instruction on Intel CPU. and C
compiler must be able to compile a GNU-style in-line assembler.
Tcl/Tk (>= 8.5), Tktable (>= 2.9, optional)
"conda (python>=3.6 pytorch torchvision cpuonly
numpy ( >= 1.14.0) matplotlib pandas -c pytorch);
python-minimal, pandoc pandoc-citeproc, qpdf; Python (>=3.6),
pytorch (>=1.4), torchvision, cpuonly, numpy ( >= 1.14.0);
pandoc (>= 2.0), qpdf ( >= 7.0) on Solaris"
Python (>= 2.7); keras <https://keras.io/> (>= 2.1)
The Boost 'program_options' library
<https://boost.org> is required.
Python (>=2.6) in path and NumPy module installed,
ghostscript (>=9.0)
ZeroMQ >= 3.0.0: libzmq3-dev (deb) or zeromq-devel
(rpm)
Cargo (>= 1.51.0) for installation from sources:
see INSTALL file
GLPK library, including -dev or -devel part
Java (>= 8) and maxent.jar >= 3.4.1 to use Maxent
GDAL (>= 2.1.2), PROJ (>= 4.9.1), GEOS (>= 3.4.2),
Cairo, Curl, NetCDF, jq, Protocol Buffers, V8, OpenSSL,
Libxml2.
C++11, zlib headers and libraries, GNU make,
optionally also bzip2 and POSIX-compliant regex functions.
TensorFlow (https://www.tensorflow.org/),
TensorFlow Probability
(https://www.tensorflow.org/probability/)
(PDF)LaTeX (https://www.latex-project.org/) with
'pdfpages' package for studentGrowthPlot option in visualizeSGP
to bind together student growth plots into school catalogs
Pandoc (http://pandoc.org) needs to installed and
available in the search path.
For playing sounds, a command line system tool for
playing wav-files is required.
Python (>=3.5.2) and the following python module:
nmrglue.
C++, arrow package with gzip codec, StarPU
For all functions resp. apps: pandoc, LaTeX. For
the edapy() function resp. Statsomat/EDAPY app: Python (>=3).
Komodo Edit (http://www.openkomodo.com), SciViews-K
(http://www.sciviews.org/SciViews-K)
c("C++11", "\n fontconfig", "\n freetype2"), C++11
LilyPond v2.23.0+ (only needed for rendering sheet
music or writing MIDI files)
Tesseract >= 3.03 (libtesseract-dev /
tesseract-devel) and Leptonica (libleptonica-dev /
leptonica-devel). On Debian you need to install the English
training data separately (tesseract-ocr-eng)
C++11, A modern compiler (>=gcc-4.9), And latexmk
is necessary to compile all output documents with the functions
provided by this package
pandoc (>= 1.12.3) suggested for using wordreg
function; LaTeX packages tikz, booktabs, dcolumn, rotating,
thumbpdf, longtable, paralist for the vignette
TensorFlow >= 1.13.0 (https://www.tensorflow.org/)
and TensorFlow IO >= 0.4.0 (https://github.com/tensorflow/io)
PhantomJS (https://phantomjs.org), pandoc (>=
1.12.3) - https://pandoc.org.
A C++17 compiler is required, and on macOS
compilation for version 11.14 is required. Optionally cmake
(only when TileDB source build selected), git (only when TileDB
source build selected); on x86_64 and M1 platforms pre-built
TileDB Embedded libraries are available at GitHub and are used
if no TileDB installation is detected, and no other option to
build or download was specified by the user.
Python (>= 2.7), python-gdal library (For Windows,
gdal installed via OSGeo4W <https://trac.osgeo.org/osgeo4w/>
recommended) clipboard
A system with zoneinfo data (e.g.
/usr/share/zoneinfo) as well as a recent-enough C++11 compiler
(such as g++-4.8 or later). On Windows the zoneinfo included
with R is used.
GNU Scientific Library version >= 1.8, C++11
under Linux, fftwtools needs libfftw3-dev
PARI/GP >= 2.3.0 [strongly recommended for
logkda()]
Linux or MacOS Intel chip tensorflow (1.14.0)
V8 engine version 6+ is needed for ES6 and WASM
support. On Linux you can also build against libv8-dev (Debian)
or v8-devel (Fedora). We also provide static libv8 binaries for
most platforms, see the README for details.
To use image and spec-compilation functions, i.e.
suggests: nodejs (> 8), and for MacOS: X11
virtuoso-opensource (Linux). For Mac & Windows,
this package can automate Virtuoso installation.
PhantomJS (http://phantomjs.org) for taking
screenshots, ImageMagick (http://www.imagemagick.org) or
GraphicsMagick (http://www.graphicsmagick.org) and OptiPNG
(http://optipng.sourceforge.net) for manipulating images.
Java (>= 5.0); WordNet database files (direct
download:
<https://wordnetcode.princeton.edu/3.0/WNdb-3.0.tar.gz>; Debian
and Fedora package: wordnet)
Perl (>= 5.0), Unitex (>= 3.0
http://www-igm.univ-mlv.fr/~unitex/)
The standalone program xgobi must be installed
additionally, see file README, or INSTALL.windows under Windows
libxslt: libxslt1-dev (deb), libxslt-devel (rpm)
Accurate, Adaptable, and Accessible Error Metrics for Predictive
Models
Reliability and Scoring Routines for the Approach-Avoidance Task
Apps Based Activities for Communicating and Understanding
Statistics
Access to Abbyy Optical Character Recognition (OCR) API
Tools for Approximate Bayesian Computation (ABC)
Data Only: Tools for Approximate Bayesian Computation (ABC)
Array Based CpG Region Analysis Pipeline
Fit Accumulated Damage Models and Estimate Reliability using ABC
ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance
Analysis with this package
Implementation of Artificial Bee Colony (ABC) Optimization
Approximate Bayesian Computational Model for Estimating P2
Approximate Bayesian Computation via Random Forests
Asymptotically Bias-Corrected Regularized Linear Discriminant
Analysis
Useful Tools for Jurimetrical Analysis Used by the Brazilian
Jurimetrics Association
Measure a Subject's Abnormality with Respect to a Reference
Population
The Abnormal Blood Profile Score to Detect Blood Doping
R Interface to the A/B Street Transport System Simulation
Software
An R-Shiny Application for Creating Visual Abstracts
Inferring Directional Conservative Causal Core Gene Networks
Abrupt Change-Point or Aberration Detection in Point Series
Access the Twitter Academic Research Product Track V2 API
Endpoint
Functions for Processing Accelerometer Data
Missing Value Imputation for Accelerometer Data
The Acute COPD Exacerbation Prediction Tool (ACCEPT)
Creation and Evaluation of Acceptance Sampling Plans
Natural Abundance Correction of Mass Spectrometer Data
Tools for Autoregressive Conditional Duration Models
Optimal Bayesian Experimental Design using the ACE Algorithm
ACE and AVAS for Selecting Multiple Regression Transformations
Estimation of Dynamic Heritability and Comparison of Twin Models
Robust Estimation of the ACF from the M-Periodogram
Automated Retrieval of ACLED Conflict Event Data
Implements ACME Estimator of Bird and Bat Mortality by Wind
Turbines
Affymetrix SNP Probe-Summarization using Non-Negative Matrix
Factorization
Modelling Dependence with Multivariate Archimax (or any
User-Defined Continuous) Copulas
Convenience functions for analytical Customer Relationship
Management
A Cost-Minimal Regular Spanning Subgraph with TreeClust
Download, Manipulate, and Present American Community Survey and
Decennial Data from the US Census
Algorithmic Complexity for Short Strings
Data Only: Algorithmic Complexity of Short Strings (Computed via
Coding Theorem Method)
A Companion Package for the Book "A Course in Statistics with R"
Asymptotic Classification Theory for Cognitive Diagnosis
Extract Circadian Rhythms Metrics from Actigraphy Data
Activity Fragmentation Metrics Extracted from Minute Level
Activity Data
Utilities for Parsing and Plotting Activities
Finding Cancer Driver Proteins with Enriched Mutations in
Post-Translational Modification Sites
A Driver Discovery Tool for Cancer Whole Genomes
Gaussian Process Based Design and Analysis for the Active
Subspace Method
Integrative Pathway Enrichment Analysis of Multivariate Omics
Data
Circular Mixed Effect Mixture Models of Animal Activity Patterns
Activity Index Calculation using Raw 'Accelerometry' Data
Advanced Processing and Chart Generation from activPAL Events
Files
Read in Activity Data and Plot Actograms
Actuarial Functions and Heavy Tailed Distributions
A Package for Displaying Visual Scenes as They May Appear to an
Animal with Lower Acuity
The R Package Ada for Stochastic Boosting
Applies Multiclass AdaBoost.M1, SAMME and Bagging
Discrete and Global Optimization Routines
Archetypoid Algorithms and Anomaly Detection
A Class of Adaptive Elastic Net Methods for Censored Data
Adaptive Approaches for Signal Detection in Pharmacovigilance
Bayesian Adaptive Designs for Diagnostic Trials
Adaptive Semiparametric Additive Regression with Simultaneous
Confidence Bands and Specification Tests
Implementation of a Generic Adaptive Monte Carlo Markov Chain
Sampler
Adaptive P-Value Thresholding for Multiple Hypothesis Testing
with Side Information
Automated Deconvolution Augmentation of Profiles for Tissue
Specific Cells
Adaptive Sampling for Positive Unlabeled and Label Noise
Learning
Adaptive Smoothing Spline (AdaSS) Estimator for the
Function-on-Function Linear Regression
Binomial and Multinomial Additive Hazard Models
Fit Additive Hazards Models for Survival Analysis
Discover and Install Useful RStudio Addins
'RStudio' Addins for Show Outline of a R Markdown/'LaTeX'
Project
Bindings for Generalized Additive Models (GAM)
Additive Data Envelopment Analysis Models
Additivity Tests in the Two Way Anova with Single Sub-class
Numbers
Adds Labeled Center Line and Scale Lines/Regions to Trellis
Plots
Analysis of Accelerated Destructive Degradation Test Data
Analysis of Ecological Data: Exploratory and Euclidean Methods
in Environmental Sciences
Exploratory Analysis of Genetic and Genomic Data
An S4 Lattice-Based Package for the Representation of
Multivariate Data
Analysis of Habitat Selection by Animals
Exploratory Analyses for the Phylogenetic Comparative Method
A 'shiny' Application for the (Audio-)Visualization of Adverse
Event Profiles
Adequacy of Probabilistic Models and General Purpose
Optimization
Import from and Export to Amiga Disk Files
Assess Medication Adherence from Pharmaceutical Claims Data
Calculate Ad Hoc Distance Thresholds for DNA Barcoding
Identification
Adjusted Bayesian Quantile Regression Inference
Adjacency-Constrained Clustering of a Block-Diagonal Similarity
Matrix
Parameter and Adjusted Probability Estimation for Right-Censored
Data
Remove Automated and Repeated Downloads from 'RStudio' 'CRAN'
Download Logs
Adaptive Mixture of Student-t Distributions
Package Admix for Admixture (aka Contamination) Models
An Interface for Running 'ADMIXTOOLS' Analyses
Algorithms using Alternating Direction Method of Multipliers
Alternating Direction Method of Multipliers to Solve Dense
Dubmatrix Problem
Regularized Model with Selecting the Number of Non-Zeros
Penalized Precision Matrix Estimation via ADMM
Ancient Demographic Modelling Using Radiocarbon
No-U-Turn MCMC Sampling for 'ADMB' Models
Adoption Probability, Triers and Users Rate of a New Product
Fast Clustering Using Adaptive Density Peak Detection
Use Least Squares Polynomial Regression and Statistical Testing
to Improve Savitzky-Golay
Design and Analysis of Locally or Globally Efficient Adaptive
Designs
Upper Clopper-Pearson Confidence Limits for Burn-in Studies
under Additional Available Information
Solving 1D Advection Bi-Flux Diffusion Equation
Interactive R Tutorials to Accompany Field (2016), "An Adventure
in Statistics"
Automatic Direct Variable Selection via Interrupted Coefficient
Estimation
Wavelet Analysis of Genomic Data from Admixed Populations
Change Point Analysis in ARIMA Forecasting
Statistical Modelling for Asymmetric Exponential Power
Distribution
A Computational Tool for Aerobiological Data
Estimate Aerosol Particle Collection Through Sample Lines
Model-Based Estimation of Confounder-Adjusted Attributable
Fractions
Diagnosis Performance Using Attributable Fraction
Raster Georeferencing, Grid Affine Transforms, Cell Abstraction
The Attributable Fraction (AF) Described as a Function of
Disease Heritability, Prevalence and Intervention Specific
Factors
Functions for Atomic Force Microscope Force-Distance Curves
Analysis
Tools for Modelling of Animal Flight Performance
Accelerated Failure Time Model with Generalized Estimating
Equations
Accelerated Failure Time for High Dimensional Data with MCMC
Adaptive Set-Based Gene-Environment Interaction Test for Rare
Variants
Aggregate Numeric, Date and Categorical Variables
Relationship Matrices for Diploid and Autopolyploid Species
Adaptive Gauss Hermite Quadrature for Bayesian Inference
Aggregation Operators and Preordered Sets
Agreement Interval of Two Measurement Methods
Statistical Procedures for Agricultural Research
Visualization of Design of Experiments from the 'agricolae'
Package
Tutorial Analysis of Some Agricultural Experiments
Evapotranspiration and Energy Fluxes Spatial Analysis
Calculate Concentration and Dispersion in Ordered Rating Scales
Experimental Statistics and Graphics for Agricultural Sciences
Regression Analysis Linear and Nonlinear for Agriculture
Stability Analysis for Agricultural Research
Estimation in Adaptive Group Sequential Trials
Miscellaneous plotting and utility functions
Adaptive and Automatic Gradient Boosting Computations
Regularization for semiparametric additive hazards regression
Additive Heredity Model: Method for the Mixture-of-Mixtures
Experiments
Functions and Data for the Book 'Applied Hierarchical Modeling
in Ecology' Vols 1 and 2
An Implementation of the Artificial Hydrocarbon Networks
Fast Searching for Multiple Keywords in Multiple Texts
Analytic Hierarchy Process for Survey Data
Hybrid Method for Multiple Criteria Decision-Making (MCDM)
Model Selection and Multimodel Inference Based on (Q)AIC(c)
Help Detect and Mitigate Bias in Machine Learning Models
Irish Weather Observing Stations Hourly Records for 2017
Download Mexico City Pollution, Wind, and Temperature Data
Suite of GR Hydrological Models for Precipitation-Runoff
Modelling
Ensemble-Based Data Assimilation with GR Hydrological Models
Teaching Hydrological Modelling with the GR Rainfall-Runoff
Models ('Shiny' Interface Included)
Convenience Tools for Working with Airport Data
Air Quality Measurements in Spain from 2011 to 2018
AIRR Data Representation Reference Library
Process and Display Data from Air Quality Sensors
Evaluation of Algorithm Collections Using Item Response Theory
Interpolation of Irregularly and Regularly Spaced Data
Adaptive Kmeans algorithm based on threshold
Anchored Kmedoids for Longitudinal Data Clustering
Immunoglobulin Clonal Lineage and Diversity Analysis
Adaptive Lasso for the Cox Regression with Interval Censored and
Possibly Left Truncated Data
PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
Quantile Regression Using Asymmetric Laplace Distribution
Adjusted Limited Dependent Variable Mixture Models
Accumulated Local Effects (ALE) Plots and Partial Dependence
(PD) Plots
Estimating Absolute Protein Quantities from Label-Free LC-MS/MS
Proteomics Data
Connectivity to 'Alfresco' Content Management Repositories
Downloading Time Series from ALFRED Database for Various
Vintages
Determine Phytoplankton Functional Groups Based on Functional
Traits
Haplotype Two Snips Out of a Paired Group of Patients
Implement an Address Search Auto Completion Menu on 'Shiny' Text
Inputs Using the 'Algolia Places' 'Javascript' Library
Allows you to Easily Interact with the Algorithmia Platform
Converts Human gene symbols to entrez IDs
Visualizing Multiple Sequence Alignments with 'ggplot2'
Acknowledge all Contributors to a Project
Allele Imputation and Haplotype Reconstruction from Pedigree
Databases
Identifying Unique Multilocus Genotypes where Genotyping Error
and Missing Data may be Present
Allele Retention, Inbreeding, and Demography
Predict and Visualize Population-Level Changes in Allele
Frequencies in Response to Climate Change
Computes all of a word's possible spellings
Model Classifier for Binary Classification
Fit GLM's with High-Dimensional k-Way Fixed Effects
Algorithms for High-Throughput Sequencing of Antigen-Specific T
Cells
Generalization of the Convex Hull of a Sample of Points in the
Plane
Obtain Alpha-Outlier Regions for Well-Known Probability
Distributions
Partition/Decomposition of Breeding Values by Paths of
Information
Implementation of the 3D Alpha-Shape for the Reconstruction of
3D Sets from a Point Cloud
Lightweight R Interface to the Alpha Vantage API
Data to Accompany Applied Linear Regression 4th Edition
Multivariate Curve Resolution Alternating Least Squares
(MCR-ALS)
Accelerated line search algorithm for simultaneous orthogonal
transformation of several positive definite symmetric matrices
to nearly diagonal form
Companion to Applied Linear Statistical Models
Provides an Interface to the NREL Alternate Fuels Locator
Optimal Experimental Designs for Accelerated Life Testing
Alternative Estimators to Adjusted R-Squared
Alternating Manifold Proximal Gradient Method for Sparse PCA
Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
An Interface to the 'AutoNavi Maps' API Geocoding Services
Generate LaTeX Code for Auto-Multiple-Choice (AMC)
Anomaly Detection with Normal Probability Functions
Additive and Multiplicative Effects Models for Networks and
Relational Data
This package includes pricing function for selected American
call options with underlying assets that generate payouts
American Politics-Inspired Color Palette Generator
Additive Main Effects and Multiplicative Interaction Model
Stability Parameters
Automated Moderated Nonlinear Factor Analysis Using 'M-plus'
A Multidirectional Optimum Ecotope-Based Algorithm
An Algorithm for Automatic Peak Detection in Noisy Periodic and
Quasi-Periodic Signals
Shiny Apps to Support Capacity Building on Harvest Control Rules
Statistical Analysis of Amplicon Data of the Same Sample to
Identify Artefacts
Analysis of Codon Data under Stationarity using a Bayesian
Framework
Simple and Canonical Correspondence Analysis
Analogue and Weighted Averaging Methods for Palaeoecology
Additional Functions for Use with the Analogue Package
Compose Interoperable Analysis Pipelines & Put Them in
Production
Model Layer for Automatic Data Analysis via CSV File
Interpretation
Functions for Analysis of fMRI Datasets Stored in the ANALYZE or
NIFTI Format
Data Analysis and Automated R Notebook Generation
Assigning Ancestry Based on Population References
Statistical analysis of surveys with anchoring vignettes
An extended Bayesian Learning Technique developed by Dr. Geoff
Webb
Asynchronous Disk-Based Representation of Massive Data
Make Spectroscopic Data Processing Easier
Simulate a Bus Route Creel Survey of Anglers
Tools for 'ROMS' the Regional Ocean Modeling System
Inferring Dominance Hierarchies and Estimating Uncertainty
Extended Kalman Filters for Animal Movement
Networks Characterising the Physical Configurations of Animal
Habitats
Animal track reconstruction for high frequency 2-dimensional
(2D) or 3-dimensional (3D) movement data
A Gallery of Animations in Statistics and Utilities to Create
Animations
Animation of Multiple Trajectories with Uncertainty
Animate Shiny and R Markdown Content when it Comes into View
Compute High Dimensional Orthant Probabilities
Artificial Neural Networks for Anomaly Detection
Annotate the Gene Symbols for Probes in Expression Array
Extract Subsequences from GenBank Annotations
AnnotLists: A tool to annotate multiple lists from a specific
annotation file
A Non-Parametric Statistical Test to Compare Clustering
Structures
Interactive Document for Working with Analysis of Variance
Test ANOVA Replications by Means of the Prior Predictive p-Value
Create Datasets with Identical Summary Statistics
Import, Manipulate and Explore the Results of an 'Antares'
Simulation
Computation of the WHO Child Growth Standards
Computation of the WHO 2007 References for School-Age Children
and Adolescents (5 to 19 Years)
An R Package for Smith's Mean Measure of Divergence (MMD)
Statistical Methods for Anthropometric Data
Antibody Titer Analysis of Vaccinated Patients
Extract Text from Microsoft Word Documents
Query 'nycflights13'-Like Air Travel Data for Given Years and
Airports
Install and Load Any Package from CRAN, Bioconductor or Github
Anything to 'POSIXct' or 'Date' Converter
Analysis of Overdispersed Data using S3 Methods
Ontogenetic Shifts in Central-Place Foraging Insects
Data from the 'Access to Opportunities Project (AOP)'
A-Optimal Block Designs for Comparing Test Treatments with
Controls
Inference in the Balanced One-Way ANOVA Model with Random Factor
Classic, Nonparametric and Bayesian One-Way Analysis of Variance
Panel
Format Outputs of Statistical Tests According to APA Guidelines
Create American Psychological Association (APA) Style Tables
Create R Markdown Text for Results in the Style of the American
Psychological Association (APA)
Computation of the 'Area Potentially Available' (APA) to Trees
Analysis of Unreplicated Orthogonal Experiments using All
Possible Comparisons
A New Age-Period-Cohort Model for Describing and Investigating
Inter-Cohort Differences and Life Course Dynamics
An Implementation of the Additive Polynomial Design Matrix
Phylogenetic Methods for Multiple Gene Data
Create Interactive Chart with the JavaScript 'ApexCharts'
Library
Multiple Testing Approach using Average Power Function (APF) and
Bayes FDR Robust Estimation
Analysis with Profile Hidden Markov Models
Auto-Adaptive Parentage Inference Software Tolerant to Missing
Parents
Interface to 'episensr' for Sensitivity Analysis of
Epidemiological Results
Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic
Regression" (3rd Ed., 2013)
Decorate a 'ggplot' with Associated Information
Another Plot Package: 'Bagplots', 'Iconplots', 'Summaryplots',
Slider Functions and Others
An Approach for Machine-Learning Modelling
Augmented and Penalized Minimization Method L0
Tools for Choice Model Estimation and Application
Adjusted Prediction Model Performance Estimation
'Apple App Store' and 'iTunes' Data Extraction
A Compilation of Applicability Domain Methods
Functions and Data Sets for 'Applied Predictive Modeling'
Amyloid Propensity Prediction Neural Network
Bayesian Prediction of Complex Computer Codes
Approximately Optimal Fine Balance Matching with Multiple Groups
Datasets from Draper and Smith "Applied Regression Analysis"
(3rd Ed., 1998)
Amdahl's Profiler, Directed Optimization Made Easy
Inspect, Read, Edit and Run 'APSIM' "Next Generation" and
'APSIM' Classic
apsrtable model-output formatter for social science
Average Positive Predictive Values (AP) for Binary Outcomes and
Censored Event Times
Visualize Population Pyramids Aggregated by Age
Integrated Development Toolbox for Aquatic Chemical Model
Generation
Access to Aquo domaintables from R (Dutch)
Another Look at the Acceptance-Rejection Method
Simulate Auto Regressive Data from Precision Matricies
Rigorous Data Reduction and Error Propagation of Ar40 / Ar39
Data
Fitting Univariate Censored Linear Regression Model with
Autoregressive Errors
Bayesian Modeling of Archaeological Chronologies
Post-Processing of the Markov Chain Simulated by 'ChronoModel',
'Oxcal' or 'BCal'
Example Datasets from Archaeological Research
Refitting and Spatial Analysis in Archaeology
An Archetype for Data Mining and Data Science Projects
Quantitative Structural Model ('QSM') Treatment for Tree
Architecture
Plant Root System Architecture Analysis Using DART and RSML
Files
Multi-Format Archive and Compression Support
Retrieve Archived Web Pages from the 'Internet Archive'
Tools for Storing, Restoring and Searching for R Objects
Tools for Archiving, Managing and Sharing R Objects via GitHub
Autoregressive Cokriging Models for Multifidelity Codes
Load ARCOS Prescription Data Prepared by the Washington Post
Processing and Physical Activity Summaries of Minute Level
Activity Data
ARDL, ECM and Bounds-Test for Cointegration
Plot Stacked Areas and Confidence Bands as Filled Polygons
Plots, Summary Statistics and Tools for Arena Simulation Users
Arena for the Exploration and Comparison of any ML Models
Fractional ARIMA (and Other Long Memory) Time Series Modeling
Accurate Estimation of Influenza Epidemics using Google Search
Data
Command Line Optional and Positional Argument Parser
Adaptable Regularized Hotelling's T^2 Test for High-Dimensional
Data
Efficient Computations of Standard Clustering Comparison
Measures
Archive and Unarchive Databases Using Flat Files
Data Analysis Using Regression and Multilevel/Hierarchical
Models
A Statistical Methodology to Select Covariates in
High-Dimensional Data under Dependence
Adaptive Rejection Metropolis Sampling (ARMS) via 'Rcpp'
Covariate-Adjusted Receiver Operating Characteristic Curve
Inference
Analysis of Large Affymetrix Microarray Data Sets
A Probe-Level Data File Format Used by 'aroma.affymetrix'
[deprecated]
Copy-Number Analysis of Large Microarray Data Sets
Core Methods and Classes Used by 'aroma.*' Packages Part of the
Aroma Framework
Geometric Morphometric Methods and Virtual Anthropology Tools
Retrieving, Managing and Analysing Air Quality and Weather Data
for Lombardy (Italy) using ARPA Lombardia Open Database
Censored Mixed-Effects Models with Different Correlation
Structures
Tools for Simulating Direct Behavioral Observation Recording
Procedures Based on Alternating Renewal Processes
Fast Generators and Iterators for Permutations, Combinations,
Integer Partitions and Compositions
Apply a Function to a Margin of an Array
An Arsenal of 'R' Functions for Large-Scale Statistical
Summaries
Aligned Rank Transform for Nonparametric Factorial Analysis
Who Ever Care About the [Art of R] Scripts?
Mining Association Rules and Frequent Itemsets
Classification Based on Association Rules
Mining NB-Frequent Itemsets and NB-Precise Rules
Visualizing Association Rules and Frequent Itemsets
Data Sets for "Applied Survival Analysis Using R""
A Collection of Statistical Tools for Biologists
Export R Objects to Several Markup Languages
Create 'Ascii' Screen Casts from R Scripts
Reads Fixed-Width ASCII Data Files (.txt or .dat) that Have
Accompanying Setup Files (.sps or .sas)
Simulate the Spread of Ascochyta Blight in Chickpea
Simulations for Adaptive Seamless Designs
Interface to the Australian Statistical Geography Standard
Methods for Adaptive Shrinkage, using Empirical Bayes
Interface to the Algorithm Selection Benchmark Library
Linkage Map Construction using the MSTmap Algorithm
Animal Social Network Inference and Permutations for Ecologists
Bayesian Inference on Causal Genetic Variants using Affected
Sib-Pairs Data
An Adaptive Sum of Powered Correlation Test (aSPC) for Global
Association Between Two Random Vectors
A General Framework for Multivariate Analysis with Optimal
Scaling
Analysis of Symmetry of Parasitic Infections
Augments 'ASReml-R' in Fitting Mixed Models and Packages
Generally in Exploring Prediction Differences
Applied Singular Spectrum Analysis (ASSA)
Verbose Assertions for Tabular Data (Data.frames and
Data.tables)
Readable Check Functions to Ensure Code Integrity
A Lightweight Core of the 'assertive' Package
Assertions to Check Properties of Strings
Assertions to Check Properties of Dates and Times
Assertions to Check Properties of Matrices
Assertions to Check Properties of Models
Assertions to Check Properties of Numbers
Assertions to Check Properties of Variables
Assertive Programming for R Analysis Pipelines
Estimating Asset Correlations from Default Data
Optimal Pricing of Assets with Fixed Expiry Date
Population Assignment using Genetic, Non-Genetic or Integrated
Data in a Machine Learning Framework
Infer Geographic Origin from Isotopic Data
A Suite of R Functions Implementing Spline Smoothing Techniques
Adaptive Subgroup Selection in Group Sequential Trials
Implements New and Existing Association Indices for Constructing
Animal Social Networks
Interactive Document for Working with Association Rule Mining
Analysis
Calculate the Assortativity Coefficient of Weighted and Binary
Networks
Statistical Tests for Genetic Association Studies
A Computational Tool for Astrochronology
Astronomy: time and position functions, misc. utilities
Applied Statistical Time Series Analysis
Adaptive SURE Thresholding Using Side Information
Average Shifted Visual Predictive Checks
Data on Asylum and Resettlement for the UK
Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic
Data
Multidimensional Scaling of Asymmetric Data
Asymmetry Measures for Probability Density Functions
A Simple R Package for Classical Parametric Statistical Tests
and Confidence Intervals in Large Samples
Estimate Asymptomatic Cases via Capture/Recapture Methods
Regression Analysis of Sparse Asynchronous Longitudinal Data
Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
Create Tables for Reporting Clinical Trials
Automatic Time Series Analysis and Forecasting using the Ata
Method
Bounding Treatment Effects by Limited Information Pooling
Inference for Average Treatment Effects using Covariate
Balancing
Download Air Quality and Meteorological Information of Chile
Automatically Tuned Markov Chain Monte Carlo
Acoustic Traveltime Calculations for 1-D Atmospheric Models
Tools to Handle and Publish Metadata as 'Atom' XML Format
Support Querying Axibase Time-Series Database
Correcting for Attenuation Due to Measurement Error
Threshold independent performance measures for probabilistic
classifiers
Variable Selection with Random Forest and the Area Under the
Curve
Standard Conform Pure Tone Audiometry (PTA) Plots
Model Audit - Verification, Validation, and Error Analysis
Automatic Dynamic Regression using Extreme Gradient Boosting
Analysis of Augmented Randomised Complete Block Designs
Data Augmentation for Machine Learning on Tabular Data
Analysis of Data with Mixed Measurement Error and
Misclassification in Covariates
eBird Data Extraction and Processing in R
Generates PFA Documents from R Code and Optionally Runs Them
Creates a Neighbourhood Using Locality Sensitive Hashing for
Gaussian Projections
Provides Datasets About Australian Politicians
Approximate Unconditional and Permutation Tests
Secure Authentication in Shiny with Auth0
Automatic Variable Reduction Using Principal Component Analysis
Learning to Rank Bagging Workflows with Metalearning
Automated Covariate Selection Using HDPS Algorithm
An Interface to the 'AutoDesk' 'API' Platform
Sparse Autoencoder for Automatic Learning of Representative
Features from Unlabeled Data
Automatic Construction of Forced-Choice Tests
Semi-Automatic Grading of R and Rmd Scripts
High Dimensional Bayesian Survival Mediation Analysis
Multiple Heat Maps for Projected Coordinates
Automagically Document and Install Packages Necessary to Run R
Code
Algorithms for Automatically Fitting MFA Models
Automated Transcriptome Classifier Pipeline: Comprehensive
Transcriptome Analysis
Automatic Generation of Interactive Visualizations for
Statistical Results
Development of Visualization Tools for Protein Sequence
Minimum Distance Estimation in Autoregressive Model
An Interpretable Machine Learning-Based Automatic Clinical Score
Generator
Retrieve Disease-Related Genes from Public Sources
Automatic Transformation of an 'R' Function into a 'shiny' App
Builds Stepwise GLMs via Train and Test Approach
An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Automatic Model Selection and Prediction for Univariate Time
Series
Check if the Title of a Package is Available, Appropriate and
Interesting
Calculation of Average Population Attributable Fractions and
Confidence Intervals
Calculate the Inertial Properties of a Flying Bird
Adaptation of Virtual Twins Method from Jared Foster
Catchment Area Weighted Climate Data Anywhere in Australia
Convert Dates to Arbitrary Week Definitions
Amazon 'Kinesis' Consumer Application for Stream Processing
A Simple Client to the 'AWS' Key Management Service
Client for the Amazon Alexa Web Information Services API
Communicating with AWS EC2 and ECS using AWS REST APIs
'AWS Key Management Service' Client Package
Class and Methods Definitions for Packages 'aws', 'adimpro',
'fmri', 'dwi'
Novel Statistical Test for Aberration Enrichment
Include Azure Application Insights in Shiny Apps
Authentication Services for Azure Active Directory
Interface to 'Container Instances', 'Docker Registry' and
'Kubernetes' in 'Azure'
Interface to the 'Azure Cosmos DB' 'NoSQL' Database Service
Interface to 'Kusto'/'Azure Data Explorer'
Interface to the 'Azure Machine Learning' 'SDK'
Interface to the Table Storage Service in 'Azure'
Interface to Azure Computer Vision Services
Interface to Azure Virtual Machine Instance Metadata
Adaptive differential evolution, b6e6rl variant
Bayesian Bacterial Growth Curve Analysis in R
Gene Orthologs for Model Organisms in a Tidy Data Format
Talking to 'Docker' and 'Singularity' Containers
Bayesian Bootstrap Predictive Mean Matching - Multiple and
Single Imputation for Discrete Data
Modeling Framework for Cellular Communities in their
Environments
Bayesian Analysis of Computer Code Output (BACCO)
Bayesian Augmented Control for Clinical Trials
Bayesian Classification and Information Sharing (BaCIS) Tool for
the Design of Multi-Group Phase II Clinical Trials
Reimplementations of Functions Introduced Since R-3.0.0
Learning Causal Cyclic Graphs from Unknown Shift Interventions
Exploring Portfolio-Based Conjectures About Financial
Instruments
Choice of the Hyperparameter Omega in the Bayesian Adjustment
for Confounding (BAC) Algorithm
Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in
Github Readme
Bayesian Average Error approach to Sample Size Determination
Robust Explainable Outlier Detection Based on OutlierTree
Bagged Cross-Validation for Kernel Density Bandwidth Selection
Bagging Bandwidth Selection in Kernel Density and Regression
Estimation
A Binary Regression Adaptive Goodness-of-Fit Test (BAGofT)
Filter Covariance and Correlation Matrices with
Bootstrapped-Averaged Hierarchical Ansatz
Bayes Factors for Informative Hypotheses
Balance Check for Multiple Covariates in Matched Observational
Studies
Balanced and Spatially Balanced Sampling
Statistical Inference and Sure Independence Screening via Ball
Statistics
Expression RNA-Seq Data Analysis Based on Linear Mixed Model
Functions and Datasets for "Bayesian Methods: A Social and
Behavioral Sciences Approach"
High Dimensional Bayesian Mediation Analysis
Protein Secondary Structure Prediction Using the Bamboo Method
Bayesian Meta-Analysis of Diagnostic Test Data
Bayesian Additive Models for Location, Scale, and Shape (and
Beyond)
Analysis and Visualization of Macroevolutionary Dynamics on
Phylogenetic Trees
Bayesian Age-Period-Cohort Modeling and Prediction
Functions for simple A/B split test and multi-armed bandit
analysis
Make Banner Comments with a Consistent Format
Batch Effect Removal and Addon Normalization (in Phenotype
Prediction using Gene Data)
Bayesian Prediction of Stochastic Processes
Label Creation for Tracking and Collecting Data from Biological
Samples
Species Identification using DNA Barcodes
Complete Works of William Shakespeare in Tidy Format
Access and Import Data from the French Open Data Portal
Bayesian Additive Regression Trees using Bayesian Model
Averaging
Causal Inference using Bayesian Additive Regression Trees
Quantifying Habitat-Induced Acoustic Signal Degradation
Regularized Wasserstein Distances and Barycenters
Bayesian Variable Selection and Model Averaging using Bayesian
Adaptive Sampling
Bayesian Variable Selection with Shrinking and Diffusing Priors
Convert Regression Between Base Function and 'rms' Package
Fast and URL-Safe Base64 Encoder and Decoder
Sabermetrics and Advanced Baseball Statistics
Utilities for Streamlined Data Import, Imputation and Modelling
Infrastructure for Computing with Basis Functions
Plot Simple Features with 'base' Sensibilities
Trace Plots, Density Plots and Chain Comparisons for MCMC
Samples
Recovering a Basic Space from Issue Scales
Construct Rich Tables for Output to 'HTML'/'Excel'
Add Trendline and Confidence Interval of Basic Regression Models
to Plot
Retrieval and Processing of the Spanish National Forest
Inventory
Classification of RNA Sequences using Complex Network Theory
Analysis and Visualization of Basketball Data
Exact Calculation of Basket Trial Operating Characteristics
Age-Specific Survival Analysis from Incomplete
Capture-Recapture/Recovery Data
Big Data Statistical Analysis for High-Dimensional Models
Managing Packages Removal and Installation
Batching Routines in Parallel and Passing Command-Line Arguments
to R
Statistical Experiments on Batch Computing Clusters
Downloads and Organizes Financial Data for Multiple Tickers
Consistent Batch Means Estimation of Monte Carlo Standard Errors
Convert Categorical Representations of Logicals to Actual
Logicals
An R Package for Data Reduction by Battery Reduction
Bayesian Estimation and Optimisation of Expected False Discovery
Rate
User Friendly Bayesian Data Analysis for Psychology
Bayesian Estimation of the Additive Main Effects and
Multiplicative Interaction Model
Bayesian Inference in the Analysis of Variance via Markov Chain
Monte Carlo in Gaussian Mixture Models
Bayesian Estimation of Bivariate Volatility Model
Bayesian Estimation of Mixtures of Multivariate Bernoulli
Distributions
Miscellaneous Functions for Bioinformatics and Bayesian
Statistics
An Implementation of Rubin's (1981) Bayesian Bootstrap
Bayesian Estimation using Bernstein Polynomial Fits Rate Matrix
Power Calculations and Bayesian Analysis of Count Distributions
and FECRT Data using MCMC
Bayesian Analysis of Censored Regression Models Under Scale
Mixture of Skew Normal Distributions
Simulation and Analysis of Adaptive Bayesian Clinical Trials
Two Arm Bayesian Clinical Trial Design with and Without
Historical Control Data
Functions and Datasets for the book "Bayesian Data Analysis"
Methods and Tools for Bayesian Dynamic Conditional Correlation
GARCH(1,1) Model
Bayesian Single-Arm Design with Survival Endpoints
Bayesian Dynamic Factor Analysis (DFA) with 'Stan'
Implementation of the Bayesian Discount Prior Approach for
Clinical Trials
Computation of Bayes Factors for Common Designs
Fit Multivariate Response Generalized Additive Models using
Hamiltonian Monte Carlo
Bayesian Estimation of the GARCH(1,1) Model with Student-t
Innovations
Bayesian Analysis of Generalized Elliptical Semi-Parametric
Models and Flexible Measurement Error Models
Bayesian Modeling via Frequentist Goodness-of-Fit
Fast Bayesian Gaussian Process Regression Fitting
Bayesian Grouped Weighted Quantile Sum Regression
Bayesian Melding of GPS and DR Path for Animal Tracking
Bayesian Estimation of the ETAS Model for Earthquake Occurrences
Bayesian Gamma Regression: Joint Mean and Shape Modeling
Predict Brain Asymmetry Based on Handedness and Dichotic
Listening
Sample Size and Power for Comparing Inequality Constrained
Hypotheses
Plot Positive and Negative Predictive Values for Medical Tests
General-Purpose MCMC and SMC Samplers and Tools for Bayesian
Statistics
Bayesian Methods for Image Segmentation using a Potts Model
Linear Combinations of Bayesian Posterior Samples
Bayesian Analysis of Contingency Table Data
Adjust Longitudinal Regression Models Using Bayesian Methodology
Bayesian Preference Learning with the Mallows Rank Model
Bayesian Data Reconciliation of Separation Processes
Bayesian Mixture Survival Models using Additive
Mixture-of-Weibull Hazards, with Lasso Shrinkage and
Stratification
The 'Tidymodels' Extension for Bayesian Models
Non-Parametric Bayesian Analyses of Animal Movement
Bayesian Multi-Resolution Gaussian Process Approximations
A Bayesian No-Effect- Concentration (NEC) Algorithm
BayesNI: Bayesian Testing Procedure for Noninferiority with
Binary Endpoints
Bayesian Analysis of Non-Stationary Gaussian Process Models
Bayesian Group Sequential Design for Ordinal Data
Variable Selection in a Hierarchical Bayesian Model for a Hazard
Function
Hierarchical Bayesian Model for a Hazard Function
Bayesian Inference for Presence-Only Data
Generate Postestimation Quantities for Bayesian MCMC Estimation
Hierarchical Bayesian analysis of ecological count data
Fast Projection Direction for Multivariate Changepoint Detection
Bayesian Regression Models with Global-Local Shrinkage Priors
Fits the Bayesian Piecewise Linear Log-Hazard Model
Bayesian Robust Generalized Mixed Models for Longitudinal Data
Bayes Factors for Hierarchical Linear Models with Continuous
Predictors
Datasets and Supplemental Functions from Bayes Rules! Book
Bayesian Variable Selection Using Simplified Shotgun Stochastic
Search with Screening (S5)
Bayesian Analysis of Small Area Estimation
Bayes Linear Estimators for Finite Population
Different Models of Posterior Distributions of Adjusted Odds
Ratio
Bayesian Spatial Split Population Survival Model
MCMC Sampling of Bayesian Linear Models via Summary Statistics
Bayesian Survival Regression with Flexible Error and Random
Effects Distributions
Bayesian Survival Analysis for Right Censored Data
Effect Size Targeted Bayesian Two-Sample t-Tests via Markov
Chain Monte Carlo in Gaussian Mixture Models
Understand and Describe Bayesian Models and Posterior
Distributions
Bayesian Analysis of Item-Level Twin Data
Bayes Factors, Model Choice and Variable Selection in Linear
Models
Visually Learning the Graphical Structure of Bayesian Networks
and Performing MCMC with 'Stan'
R Utilities Accompanying the Software Package BayesX
R Package Distribution of the BayesX C++ Sources
Bayesian Zero-Inflated Bernoulli Regression Model
Global Bayesian Foraminifera Core Top Calibration
R Functions for Bayesian Hazard Rate Estimation
Chronological Bayesian Models Integrating Optically Stimulated
Luminescence and Radiocarbon Age Dating
Bayesian Multidimensional Scaling and Choice of Dimension
Computation of Bayes Factors for Common Biomedical Designs
Bayesian Analysis of Significantly Mutated Genes in Cancer
Bayesian Stability Analysis of Genotype by Environment
Interaction (GEI)
On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
Solving and Optimizing Large-Scale Nonlinear Systems
Identification of Bull and Bear States of the Market
Bayesian bandwidth estimation and semi-metric selection for the
functional kernel regression with unknown error density
Bayesian bandwidth estimation for multivariate kernel regression
with Gaussian error
Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
Benthic Biotic Indices Calculation from Composition Data
Miscellaneous Helper Functions for B. Bischl
Tools for General Maximum Likelihood Estimation
Models for Continuous Traits Evolving in Macroevolutionary
Landscapes of any Shape
Bessel and Beta Regressions via Expectation-Maximization
Algorithm for Continuous Bounded Data
Bayesian Methods and Graphical Model Structures for Statistical
Modeling
Hierarchical Bayesian Analysis of North American BBS Data
Gene Regulatory Network Inference with Bc3net
Block Coordinate Ascent with One-Step Generalized Rosen
Algorithm
Bias Corrected Bootstrap Confidence Intervals
Bias-Corrected Bayesian Classification with Selected Features
Calculation of Option Prices Based on a Universal Solution
Search and Retrieve Data from the BC Data Catalogue
Business Cycle Dating and Plotting Tools
Bayesian composition estimator: estimating sample (taxonomic)
composition from biomarker data
The Bayesian Causal Effect Estimation Algorithm
B Cell Receptor Somatic Hyper Mutation Analysis
Causal Inference for a Binary Treatment and Continuous Outcome
using Bayesian Causal Forests
Semiparametric Bivariate Correlated Frailty Model
Bivariate Correlated Frailty Models with Varied Variances
Bayesian Constrained Generalised Linear Models
Bias-Corrected Estimates for Generalized Linear Models for
Dependent Data
Clinical Trial Calculation Based on BCHM Design
Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate
Estimation, and Non-Parametric Phase Modelling
A Dirichlet Process Mixture Model for Clustering Longitudinal
Gene Expression Data
Map Layers and Spatial Utilities for British Columbia
Mixed Effect Model with the Box-Cox Transformation
Bayesian Analysis of Change Point Problems
Behavioral change point analysis of animal movement
Bayesian Multiple Changepoint Detection Using Metadata
Bayesian Continual Reassessment Method for Phase I
Dose-Escalation Trials
Bias-Corrected Methods for Estimating the ROC Surface of
Continuous Diagnostic Tests
A Bayesian Semiparametric Factor Analysis Model for Subtype
Identification (Clustering)
Bayesian Context Trees for Discrete Time Series
Cross-Validation for the SVD (Bi-Cross-Validation)
A User-Friendly Biodiversity Data Cleaning App for the
Inexperienced R User
Darwinizer: Darwin Core (DwC) Field Names Standardization
Efficient Determination of Sample Size in Balanced Design of
Experiments
Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Transparent and Reproducible Artificial Data Generation
Bayesian Adaptive Designs for Phase II Trials with Binary
Endpoint
Optimisation of Bayesian Decision Problems
Inference and Design for Predictive Values in Diagnostic Tests
Bayesian Detection of Potential Risk Using Inference on Blinded
Safety Data
Remove Weekends and Holidays from ggplot2 Axes
Routines for Block Diagonal Symmetric Matrices
Bayesian Inference for Discrete Weibull Regression
Biometric Exploratory Analysis Creation House
Analysis of Multiplex Cytometric Bead Assays
Fast Bayesian Inference in Large Gaussian Graphical Models
Visualization via Beanplots (like Boxplot/Stripchart/Violin
Plot)
Bayesian Analysis of Heterogeneous Treatment Effect
Bayesian Estimation of Change-Points in the Slope of
Multivariate Time-Series
Quantifies effects of geo/eco distance on genetic
differentiation
Extract Genotypes from a PLINK .bed File
Genomic Region Processing using Tools Such as 'BEDTools',
'BEDOPS' and 'Tabix'
Easily Play Notification Sounds on any Platform
The Bee Swarm Plot, an Alternative to Stripchart
Tools for Behavior Change Researchers and Professionals
Canonical Data Structure for Behavioural Data
Download Historical Data from the Belgrade Stock Exchange
Boltzmann Entropy of a Landscape Gradient
Count Regression Models Based on the Bell Distribution
28 benchmark densities from Berlinet/Devroye (1994)
Benchmark and Frontier Analysis Using DEA and SFA
High Precise Measurement of R Expressions Execution Time
Benford Analysis for Data Validation and Forensic Analytics
Statistical Tests for Evaluating Conformity to Benford's Law
Bent-Cable Regression for Independent Data or Autoregressive
Time Series
Bayesian Exponential Random Graph Models
Function Collection Related to Plotting and Hydrology
Best Subset Selection in Linear, Logistic and CoxPH Models
Computations and Approximations for Bessel Functions
Bayesian Estimation Supersedes the t-Test
Best Subset GLM and Regression Utilities
Bayesian Estimation of Intervention Effects
A Comprehensive R Package for Best Subset Selection
Burden Estimate of Common Communicable Diseases in Settlements
of Displaced Populations
Mini Games from Adventures of Beta and Bit
Detecting rare variants for quantitative traits using nuclear
families
Functions for Working with Two- And Four-Parameter Beta
Probability Distributions
Partitioning Beta Diversity into Turnover and Nestedness
Components
Calculate Power and Sample Size with Beta Regression
Taxonomic Uncertainty on Multivariate Analyses of Ecological
Data
Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH
Models
Bayesian Evaluation of Variant Involvement in Mendelian Disease
Compare the Goodness of Fit of Benford's and Blondeau Da Silva's
Digit Distributions to a Given Dataset
Bayesian Spectral Inference for Stationary Time Series
Flexible Bayes Factor Testing of Scientific Expectations
Search and Download Data from the Swiss Federal Statistical
Office (BFS)
Plot Maps from Switzerland by Swiss Federal Statistical Office
Bayesian Framework for Computational Modeling
A Suite of Packages for Analysis of Big Genomic Data
Binary Generalized Extreme Value Additive Models
BoardGameGeek's Board Game Data Analysis Tools
Bayesian Genomic Linear Models Applied to GE Genome Selection
Bayesian Estimation of Generalized Graded Unfolding Model
Parameters
Example BGM Files for the Atlantis Ecosystem Model
Gaussian Mixture Modeling Algorithms and the Belief-Based
Mixture Modeling
Block Gibbs Sampler with Incomplete Multinomial Distribution
Bayesian Group Sparse Multi-Task Regression
Estimate the Burden of Healthcare-Associated Infections
Useful Functions for Box, Hunter and Hunter II
Bayesian Hierarchical Models for Basket Trials
Bayesian Hierarchical Multi-Subject Multiscale Analysis of
Functional MRI Data
Bayesian Hierarchical Poisson Models for Multiple Grouped
Outcomes with Clustering
Structural Bayesian Vector Autoregression Models
Bayesian Multi-Plate High-Throughput Screening of Compounds
Blinding Assessment Indexes for Randomized, Controlled, Clinical
Trials
Bias correction of the parameter estimates of the beta
regression model
A GUI to Correct Measurement Bias in DNA Methylation Analyses
R Wrapper for Java Implementation of BiBit
Create Different Types of Bibliometric Networks
Binary Classification Using Extensions of Discriminant Analysis
Maximal Biclique Enumeration in Bipartite Graphs
Integrative Inference of De Novo Cis-Regulatory Modules
Bayesian Inference for Directed Acyclic Graphs
Efficient Estimation of Bid-Ask Spreads from Open, High, Low,
and Close Prices
Calculates the Bidimensional Regression Between Two 2D
Configurations
Tools for Accessing the Botanical Information and Ecology
Network Database
Tools for Survey Statistics in Educational Assessment
'BLAS' and 'LAPACK' Routines for Native R Matrices and
'big.matrix' Objects
Utilities for 'big.matrix' Objects from Package 'bigmemory'
Read, Write, Manipulate, Explore Chess PGN Files and R API to
UCI Chess Engines
Distances for Machine Learning and Statistics in the Context of
Big Data
Statistical Methods and Algorithms for Big Data
Case-Control Analysis of Multi-Allelic Loci
Biochemically Intuitive Generalized Loewe Model
Extending Lasso Model Fitting to Big Data
Physical and Physiological Ecosystem Properties from Eddy
Covariance Data
Bounded Memory Linear and Generalized Linear Models
Making Optimal Matching Size-Scalable Using Optimal Calipers
Manage Massive Matrices with Shared Memory and Memory-Mapped
Files
A shared resource interface for Bigmemory Project packages
Arbitrary-Precision Integer and Floating-Point Mathematics
Interface with Google BigQuery with Shiny Compatibility
Big Quadratic Inverse Covariance Estimation
Generalized Linear Models (GLM) for Large Data Sets
An Interface to Google's 'BigQuery' 'API'
Fast Generation of High-Dimensional Random Vectors
Statistical Tools for Filebacked Big Matrices
Big Survival Analysis Using Stochastic Gradient Descent
Table, Apply, and Split Functionality for Matrix and
'big.matrix' Objects
Nonparametric Analysis of Bivariate Gap Time with Competing
Risks
Sparse Estimation of Large Time Series Models
Top Scoring Pair based methods for classification
Dimension Reduction Methods for Multivariate Time Series
Co-Clustering Adjusted Rand Index and Bikm1 Procedure for
Contingency and Binary Data-Sets
Contains Data of Billboard Hot 100 Songs
Create Interactive Chart with the JavaScript 'Billboard' Library
Power for SNP analyses using silver standard cases
Estimates Mixture Models for Case-Control Data
Threshold Cut Point of Probability for a Binary Classifier Model
Creates, Merges, and Reads Binary Dosage Files
Variable Selection for Binary Data Using the EM Algorithm
Mean and Variance Modeling of Binary Data
Fit and Predict a Gaussian Process Model with (Time-Series)
Binary Response
Estimate the Correlation Between Two Irregular Time Series
Multi-Class Discriminant Analysis using Binary Predictors
Methods for Analyzing Binned Income Data
Evaluation and Experimental Design for Binomial Group Testing
Identification and Estimation using Group Testing
Calculation for Single Arm Group Sequential Test with Binary
Endpoint
Processes Binary Data Obtained from Fragment Analysis
Nonparametric Estimation for Interval-Grouped Data
Data Generation with Binary and Continuous Non-Normal Components
Simultaneous Generation of Multivariate Binary and Normal
Variates
Binomial Confidence Intervals For Several Parameterizations
Generates binomial random numbers via the coupling from the past
algorithm
Binomial Random Forest Feature Selection
Efficient MCMC for Binomial Logit Models
Confidence Intervals and Sample Size Determination for a
Binomial Proportion under Simple Random Sampling and Pooled
Sampling
Concurrent Generation of Binary, Ordinal and Continuous Data
Depth-Dependent Binocular Visual Fields Simulation
Analyzing Replicated ChIP Sequencing Data Using Quasi-Likelihood
Cut Numeric Values into Evenly Distributed Groups
Piecewise Smooth Regression by Bootstrapped Binary Segmentation
Efficient Implementation of Binary Segmentation
Exact Binary Sequential Designs and Analysis
Data Preprocessing, Binning for Classification and Regression
Bayesian BIN (Bias, Information, Noise) Model of Forecasting
Predict Environmental Conditions from Biological Observations
Analyse Audio Recordings and Automatically Extract Animal
Vocalizations
Summarising Multi Well Plate Cellular Assay
Interactive Circular Visualization of Genomic Data using
'htmlwidgets' and 'BioCircos.js'
Access the Bioconductor Project Package Repository
Feature Selection and Classification with the Embedded
Validation Procedures for Biomedical Data Analysis
Create and Manipulate BioCompute Objects
Package for Community Ecology and Suitability Analysis
Multilevel Modeling of Dendroclimatical Fluctuations
Biodiversity Assessment Using Functional Tools
Process Biogas Data and Predict Biogas Production
Point Data Quality Assessment and Coordinate Conversion
Mathematical Modelling of (Dynamic) Microbial Inactivation
Bi-Objective k-Nearest Neighbors Imputation for Multilevel Data
Create Hyperlinks to Biological Databases and Resources
Modelling and Forecasting Biological Invasions
Utilities for the BIOM (Biological Observation Matrix) Format
Find Biomarkers in Two-Class Discrimination Problems
Estimating Aboveground Biomass and Its Uncertainty in Tropical
Forests
Ensemble Platform for Species Distribution Modeling
Sensitivity Analysis and Optimum Experiment Design for Microbial
Inactivation
Identification of Impulse-Like Gene Expression Changes in Short
Genomic Series Data
Biomarker Prognostic Enrichment Tool for Time-to-Event Trial
Simulation of deterministic and stochastic biochemical reaction
networks using Petri Nets
Biological Analysis and Visualization of Weather Radar Data
From Biological Sequences and Simulations to Correlation
Analysis
From Biological Sequences to Multidimensional Scaling
A Toolbox for Manipulating Biological Sequences
Convert a Matrix of Raw Values into Nice and Tidy Data
Tools for Electromyogram Signals (EMG) Analysis
Biomarker Selection in Penalized Regression Models
Utility Functions, Datasets and Extended Examples for Survival
Analysis
Calculation of Freshwater Biotic Indices
Tools for Biometry and Applied Statistics in Agricultural
Science
Create Area-Proportional Venn Diagrams from Biological Lists
Visualising Bipartite Networks and Calculating Some (Ecological)
Indices
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
Bivariate Probit with Partial Observability
Ranking Nodes in Bipartite and Weighted Networks
Methods to Analyse Ring Re-Encounter Data
The R Package for "The Basics of Item Response Theory Using R"
Tools and Palettes for Bivariate Thematic Mapping
Estimating Cell Type Composition from Methylation Sequencing
Data
Tools to find bad commits with git bisect
Toolkit to Identify Candidate Synthetic Lethality
Approximate Bayesian Inference via Sparse Grid Quadrature
Evaluation (BISQuE) for Hierarchical Models
Decomposition of Bulk Expression with Single-Cell Sequencing
Cumulative History Analysis for Bistable Perception Time Series
Classes and Methods for Fast Memory-Efficient Boolean Selections
A S3 Class for Vectors of 64bit Integers
Bayesian Integrative Models of Trait Evolution
Binarization and Trinarization of One-Dimensional Data
Quantize Floating-Point Numbers for Improved Compressibility
Estimating the Parameters of Some Bivariate Distributions
Bivariate Alternating Recurrent Event Data Analysis
Tolerance Interval and EIV Regression - Method Comparison
Studies
Bivariate Residual Plots with Simulation Polygons
Generation of Bivariate Uniform Data and Its Relation to
Bivariate Binary Data
Conduct Univariate and Bivariate Wavelet Analyses
Functions to compute the biweight mean vector and covariance &
correlation matrices
Business Days Calculations and Utilities
An API Wrapper for the Bureau of Justice Statistics (BJS)
Parallel Chain Tools for Bayesian Kernel Machine Regression
Black Box Optimization and Exploration of Parameter Space
Processing Raw Black Carbon Concentration
Read and Write FWF Files in the 'Blaise' Format
Blaker's Binomial and Poisson Confidence Limits
Plots (Slightly Extended) Bland-Altman Plots
Bayesian Inference with Laplace Approximations and P-Splines
Native R Implementation of an Efficient BLAST-Like Algorithm
Black-Litterman and Copula Opinion Pooling Frameworks
A New Link Function that Blends Two Specified Link Functions
Analyze biotic homogenization of landscapes
Joint Analysis of Experiments with Mixtures and Random Effects
Bipartite Longitudinal Influence Network (BLIN) Estimation
Record Linkage for Empirically Motivated Priors
Bayesian Functional Linear Regression with Sparse Step Functions
Binomial linear and linear-expit regression
Data Files and Functions Accompanying the Book "Bayesian Data
Analysis in Ecology using R, BUGS and Stan"
A Simple S3 Class for Representing Vectors of Binary Data
('BLOBS')
Co-Clustering Package for Binary, Categorical, Contingency and
Continuous Data-Sets
Estimation of Large Block Covariance Matrices
Spatial and Environmental Blocking for K-Fold Cross-Validation
Bayesian Calculation of Region-Specific Fixation Index to Detect
Local Adaptation
Block Forests: Random Forests for Blocks of Clinical and Omics
Covariate Data
Select an Optimal Block-Length to Bootstrap Dependent Data
(Block Bootstrap)
blockmatrix: Tools to solve algebraic systems with partitioned
matrices
Creates strings that show a text message in 8 by 8 block letters
Generalized and Classical Blockmodeling of Valued Networks
Latent and Stochastic Block Model Estimation by a 'V-EM'
Algorithm
Randomization for Block Random Clinical Trials
Block Design for Response-Adaptive Randomization
Nested and Crossed Block Designs for Factorial and Unstructured
Treatment Sets
Block, Assign, and Diagnose Potential Interference in Randomized
Experiments
Create Blogs and Websites with R Markdown
Impute and Analyze Data with BLOQ Observations
Tools for Developing Binary Logistic Regression Models
Dose Escalation Design in Phase I Oncology Trial Using Bayesian
Logistic Regression Modeling
Stochastic Rainfall Generator Bartlett-Lewis Rectangular Pulse
Model
Interactive Document for Working with Binary Logistic Regression
Analysis
Make Requests from the Bureau of Labor Statistics API
Blyth-Still-Casella Exact Binomial Confidence Intervals
Bayesian Model Averaging for Basket Trials
Multivariate Extremes: Bayesian Estimation of the Spectral
Measure
Bayesian Multivariate Analysis of Summary Statistics
Mediation Analysis with Missing Data Using Bootstrap
Bayesian Multidimensional Generalized Graded Unfolding Model
Miscellaneous Functions for Panel Data, Quantiles, and Printing
Results
Bayesian Sampling for Stick-Breaking Mixtures
Bayesian Estimation for Finite Mixture of Distributions
Bundle Methods for Regularized Risk Minimization Package
An Implementation of the Bayesian Markov (Renewal) Mixed Models
Bayesian Models for Rare Variant Association Analysis
Bayesian Multilevel Single Case Models using 'Stan'
Bayesian Approach for MTAR Models with Missing Data
Bayesian Multi-Trait Multi-Environment for Genomic Selection
Analysis
Learning Discrete Bayesian Network Classifiers from Data
Data Generator based on Bayesian Network Model
Bounding Omitted Variable Bias Using Auxiliary Data
Bayesian Network Structure Learning, Parameter Learning and
Inference
Bayesian Network Meta-Analysis using 'JAGS'
An Implementation of Sensitivity Analysis in Bayesian Networks
Bagged k-Nearest Neighbors Survival Prediction
Bayesian Estimation for Normal Heteroscedastic Nonlinear
Regression Models
Ferguson-Klass Type Algorithm for Posterior Normalized Random
Measures
Bayesian Nonparametric Model for Clustering with Mixed Scale
Variables
Simulate Genotypes from the BN-PSD Admixture Model
A Bayesian Nonparametric Algorithm for Time Series Clustering
Pathway Enrichment Analysis Based on Bayesian Network
Bayesian Non- And Semi-Parametric Model Fitting
Spatial Implementation of Bayesian Networks and Mapping
Bayesian Network Structure Learning from Data with Missing
Values
Bayesian Networks Interactive Visualization and Explainable
Artificial Intelligence
Bayesian Output Analysis Program (BOA) for MCMC
Board Games and Tools for Building Board Games
Profiling of Peripheral Blood Mononuclear Cells using CyTOF
Bacterium and Virus Analysis of Orthologous Groups (BOG) is a
Package for Identifying Differentially Regulated Genes in the
Light of Gene Functions
Interface to the Boilerpipe Java Library
Bayesian Optimal INterval (BOIN) Design for Single-Agent and
Drug- Combination Phase I Clinical Trials
Functions for Elementary Bayesian Inference
Fixed Coupon Bond Valuation Allowing for Odd Coupon Periods and
Various Day Count Conventions
An Improved Multiple Testing Procedure for Controlling False
Discovery Rates
Authoring Books and Technical Documents with R Markdown
Generate Assorted Books and Documents with R 'bookdown' Package
Optimal Estimation of Partially Observed Boolean Dynamical
Systems
Construction, Simulation and Analysis of Boolean Networks
Debugging Tools to Inspect the Intermediate Steps of a Call
Boosting for Multivariate Longitudinal Responses
Boosted Multivariate Trees for Longitudinal Data
Bootstrap Functions (Originally by Angelo Canty for S)
A Bootstrap-Based Heterogeneity Test for Meta-Analysis
Bootstrapping Estimates of Clustering Stability
Combine Parameter Estimates via Parametric Bootstrap
Bootstrap Confidence Intervals on Effect Sizes
Simulation and Comparison of Dissolution Profiles
Bootstrap Inference for Multiple Imputation
Bootstrapped Confidence Intervals for (Negative) Likelihood
Ratio Tests
Bootstrap-MRMR Technique for Informative Gene Selection
Bootstrap Methods for Various Network Estimation Routines
Bootstrap Hyperparameter Selection for PLS Models and Extensions
Bootstrap Prediction Intervals and Bias-Corrected Forecasting
A Bootstrap Test for the Probability of Ruin in the Classical
Risk Process
Bootstrap Subsamplings of Sparse Partial Least Squares -
Discriminant Analysis for Classification and Signature
Identification
Functions for the Book "An Introduction to the Bootstrap"
Bootstrap Algorithms for Finite Population Inference
Bootstrap cis-QTL Method that Corrects for the Winner's Curse
Fast, Exact Bootstrap Principal Component Analysis for High
Dimensional Data
Bootstrap Tolerance Levels for Credit Scoring Validation
Statistics
Transforming Behavioral Observation Records into Data Matrices
Bayesian Ordination and Regression AnaLysis
Estimate Causal Effects with Borrowing Between Data Sources
Wrapper Algorithm for All Relevant Feature Selection
A Bunch of Structure and Sequence Analysis
Best Orthogonalized Subset Selection (BOSS)
Analytic Solutions for (ground-water) Boussinesq Equation
Outlier Detection and Influence Diagnostics for Meta-Analysis
Functions to Create Publication-Quality Plots
Write Reusable, Composable and Modular R Code
Box-Cox-Type Transformations for Linear and Logistic Models with
Random Effects
Double Box Plot for Two-Axes Correlation
Nonparametric Bounds for the Average Causal Effect Due to Balke
and Pearl and Extensions
Biplot of Multivariate Data Based on Principal Components
Analysis
Beta Product Confidence Procedure for Right Censored Data
Bayesian Paired Comparison Analysis with Stan
bPeaks: an intuitive peak-calling strategy to detect
transcription factor binding sites from ChIP-seq data in small
eukaryotic genomes
Bayesian Phylogeographic and Ecological Clustering
Bayesian Model Selection Approach for Parsimonious Gaussian
Mixture Models
Bayesian Purity Model to Estimate Tumor Purity
Bayesian Projected Normal Regression Models for Circular Data
Computations Around Bayesian Predictive Power
Bayesian Quantile Regression for Ordinal Models
A Method to Estimate the Accuracy and Biogeographical Status of
Georeferenced Biological Data
BRACoD: Bayesian Regression Analysis of Compositional Data
Calculate the Revealed Aggregator of Probability Predictions
Visualize Combined Action Response Surfaces and Report BRAID
Analyses
Fitting Dose Response with the BRAID Combined Action Model
Inference the Partial Correlations Based on Time Series Data
Region-Level Connectivity Network Construction via Kernel
Canonical Correlation Analysis
Helper Functions to 'misc3d' and 'rgl' Packages for Brain
Imaging
Simulation and Estimation for Branching Processes
Bayesian Screening and Variable Selection
Download and Processing of Automatic Weather Stations (AWS) Data
of INMET-Brazil
Model Agnostic Explainers for Individual Predictions
Methods for Fast Multiple Change-Point Detection and Estimation
An R Package for Multiple Break-Point Detection via the
Cross-Entropy Method
Core Functions to Read and Fit 13c Time Series from Breath Tests
Stan-Based Fit to Gastric Emptying Curves
Brain Cell Type Specific Gene Expression Analysis
Templating Framework for Report Generation
Bias Reduction in Binomial-Response Generalized Linear Models
Bias Reduction in Generalized Linear Models
An Implementation of the Bridge Distribution with Logit-Link as
in Wang and Louis (2003)
Bridge Hand Generator with Criteria Selector
Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
Bridge Sampling for Marginal Likelihoods and Bayes Factors
Package for Brik and Fabrik Algorithms to Initialise Kmeans
Computation of BRINDA Adjusted Micronutrient Biomarkers for
Inflammation
Fast Inference for Large Spatial Datasets using BRISC
Bias Reduction with Missing Binary Response
Bayesian Marginal Effects for 'brms' Models
Bayesian Regularization for Feed-Forward Neural Networks
Broken Stick Model for Irregular Longitudinal Data
Browse Over Longitudinal Data Graphically and Analytically in R
Convert Statistical Objects into Tidy Tibbles
Enhancements for 'broom' and 'easystats' Package Families
A Compression Format Optimized for the Web
Bayesian Analysis of Quantile Regression Models
Bayesian Inference on the Ratio of Two Poisson Rates
Broadly Useful Convenient and Efficient R Functions
Interface to the 'OpenBUGS' MCMC Software
High-Level Modeling Functions with 'torch'
Normalisation Tools for Inter-Condition Variability of ChIP-Seq
Data
A 'Bootstrap 4' Version of 'shinydashboard'
Safety Assessment in Agricultural Field Trials
Bayesian State-Space Models for Animal Movement
Bayesian Spectral Analysis Models using Gaussian Process Priors
The Bayesian Spatial Bradley--Terry Model
Bayesian Survival Model with Lasso Shrinkage Using Generalized
Weibull Regression
Nonparametric Smoothing of the Hazard Function
Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'
Bayes Screening and Model Discrimination
Bayesian Proposal to Fit Spatial Econometric Models
Bayesian Nonparametric Spectral Density Estimation Using
B-Spline Priors
Adds Functionality to the R Markdown + Shiny Bootstrap Framework
Bayesian Semiparametric Models for Meta-Analysis
Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing
Matrix Estimates
Bayesian Inference of Non-Linear and Non-Gaussian State Space
Models
Whitening Data as Preparation for Blind Source Separation
Create HTML Content with Bootstrap 5 Classes and Layouts
Submitter and Monitor of the 'LSF Cluster'
Fitting a Log-Binomial Model using the Bekhit-Schöpe-Wagenpfeil
(BSW) Algorithm
Beyond the Border - Kernel Density Estimation for Urban
Geography
Bradley-Terry Model with Exponential Time Decayed Log-Likelihood
and Adaptive Lasso
Temporal Exponential Random Graph Models by Bootstrapped
Pseudolikelihood
Modelling Heterogeneity in Paired Comparison Data
Implementing BTYD Models with the Log Sum Exp Patch
Probabilistic Models for Assessing and Predicting your Customer
Base
Beautiful Bubbles for 'shiny' and 'rmarkdown' Backgrounds
Bucky's Archive for Data Analysis in the Social Sciences
Bias and Uncertainty Corrected Sample Size
A Deep Learning for Statistical Classification and Regression
Analysis with Random Effects
Stepwise Elimination and Term Reordering for Mixed-Effects
Regression
Organize & Run Build Scripts Comfortably
System for Building and Debugging C/C++ Dynamic Libraries
Buckley-James Regression for Survival Data with High-Dimensional
Covariates
Automatic Groove Identification via Bayesian Changepoint
Detection
Tools for Modeling Bumblebee Colony Growth and Decline
Quantify Disease Transmission Within and Between Population
Groups
Analyze Bunching in a Kink or Notch Setting
Markov model for bursty behavior in streams
Calculates Business Duration Between Two Dates
Bayesian Analysis of a Vector Autoregressive Model with
Stochastic Volatility and Time-Varying Parameters
Bayesian Inference of Vector Autoregressive Models
A Simple alternative to proportional Venn diagrams
The Stark-Parker algorithm for bounded-variable least squares
Solvers for Boundary Value Problems of Differential Equations
Bayesian Variable Selection in High Dimensional Settings using
Nonlocal Priors
Backward Procedure for Change-Point Detection
Describe Image Patterns in Natural Structures
Baumgartner Weiss Schindler Test of Equal Distributions
Tools for Case 1 Best-Worst Scaling (MaxDiff) Designs
Statistics About Bytes Contained in a File as a Circle Plot
Bivariate Zero-Inflated Negative Binomial Model Estimator
Extended Inference for Lasso and Elastic-Net Regularized Cox and
Generalized Linear Models
Methods for Detecting Safety Signals in Clinical Trials Using
Body-Systems (System Organ Classes)
Compare Two Classifications or Clustering Solutions of Varying
Structure
Infering large-scale gene networks with C3NET
C5.0 Decision Trees and Rule-Based Models
Simple, Multiple and Joint Correspondence Analysis
Project Specific Workspace Organization Templates
Bootstrap Confidence Regions for Simple and Multiple
Correspondence Analysis
Classification Accuracy and Consistency under Item Response
Theory
Conditional Density Estimation Network Construction and
Evaluation
A Package to Perform Covariate Augmented Dickey-Fuller Unit Root
Tests
Provides a GUI to Several Statistical Methods
Simulation of Plasma Caffeine Concentrations by Using Population
Pharmacokinetic Model
Conditional Akaike Information Criterion for 'lme4' and 'nlme'
Graphical Aid in Correspondence Analysis Interpretation and
Significance Testings
R Graphics Device using Cairo Graphics Library for Creating
High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG,
PostScript) and Display (X11 and Win32) Output
Comparison of Algorithms with Iterative Sample Size Estimation
Calculations for All Common Subsequences
Comparative Analysis with Annotation-Based Genomic Components
High Dimensional Numerical and Symbolic Calculus
Simple Wrapper for Computationally Expensive Functions
Calculates the Wavelet-Based Organization Index
Create, Read, Write, and Work with 'iCalander' Files, Calendars
and Scheduling Data
Ready to Print Monthly and Yearly Calendars Made with 'ggplot2'
Multiple Imputation Using MICE and Random Forest
Automated Parameter Estimation for Complex (Ecological) Models
Calibration of Scatterplot and Biplot Axes
Calibration for Computer Experiments with Binary Responses
Weighting and Estimation for Panel Data with Non-Response
Bayesian Calibration of Complex Computer Codes
Mapping ML Scores to Calibrated Predictions
Providing an Interface to the e-Shotgun Algorithm for Bayesian
Optimization
Improved Allele-Specific Copy Number of SNP Microarrays for
Downstream Segmentation
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
'CamelUp' Board Game as a Teaching Aid for Introductory
Statistics
Cell-Typing using Variance Adjusted Mahalanobis Distances with
Multi-Labeling
Mixed Computerized Adaptive Multistage Testing
Camera Trap Data Management and Preparation of Occupancy and
Spatial Capture-Recapture Analyses
Maps of the Political and Administrative Divisions of Canada
Access, Retrieve, and Work with Canadian Census Data and
Geography
Estimation of Temporal Ordering of Cancer Abnormalities
Visualizing Generalized Canonical Discriminant and Canonical
Correlation Analysis
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal
and Spatial Clonal Evolutionary History by Next-Generation
Sequencing
Compositional Analysis of Differentially Expressed Proteins in
Cancer
Accessing Statistics Canada Data Table and Vectors
Directly Extracts Complete CANSIM Data Tables
Visualization Package for CanvasXpress in R
Covariate Assisted Principal (CAP) Regression for Covariance
Matrix Outcomes
Combined Analysis of Pleiotropy and Epistasis for Diversity
Outbred Mice
Comparative Analyses of Phylogenetics and Evolution in R
Capital Budgeting Analysis, Annuity Loan Calculations and
Amortization Schedules
Compute and Visualize CAPL-2 Scores and Interpretations
A Virtual Patient Simulator in the Context of Calcium and
Phosphate Homeostasis
Numbers Figures and Creates Simple Captions
CAlibrating Penalities Using Slope HEuristics
Estimates population size from non-invasive sampling
Automatic Calibration by Evolutionary Multi Objective Algorithm
Covariate-Adaptive Randomization for Clinical Trials
Spatial Generalised Linear Mixed Models for Areal Unit Data
Data Used in the Vignettes Accompanying the CARBayes and
CARBayesST Packages
Spatio-Temporal Generalised Linear Mixed Models for Areal Unit
Data
Estimation of the Number of Fatalities from Carcass Searches
Cardiovascular and Autonomic Research Design
Companion to Applied Regression Data Sets
Identification of Cardinal Dates in Ecological Time Series
High-Dimensional Regression and CAR Score Variable Selection
Statistical package for population size estimation in
capture-recapture models
Government of Canada Vehicle Recalls Database API Wrapper
Procedures for Computing Indices of Careless Responding
Continuous-Time Fractionally Integrated ARMA Process for
Irregularly Spaced Long-Memory Time Series Data
Estimation of caribou abundance based on large scale
aggregations monitored by radio telemetry
Functions for Statistics Classes at Carleton College
Ecological Quality Ratios Calculation and Plot
Carlson Elliptic Integrals and Incomplete Elliptic Integrals
Continuous Biomarker Evaluation with Adjustment of Covariates
A Collection of Database, Data Structure, Visualization, and
Utility Functions for R
Build Common Tables of Summary Statistics for Reports
CRISPR AnalyzeR for Pooled CRISPR Screens
Predicting Categorical and Continuous Outcomes Using One in Ten
Rule
Covariate Assisted Ranking and Screening for Large-Scale
Two-Sample Inference
Correlation-Adjusted Regression Survival (CARS) Scores
Tools for Understanding Highway Performance
Censored Autoregressive Model with Exogenous Covariates
Selection, Reverse-Engineering and Prediction in Cascade
Networks
Experimental Data of Cascade Experiments in Genomics
Casualty Actuarial Society Individual Claim Simulator
Fitting Flexible Smooth-in-Time Hazards and Risk Functions via
Logistic and Multinomial Regression
Identify Similar Cases for Qualitative Case Studies
Metodos De Estimacion Con Disenio Probabilistico y Estratificado
en Encuesta CASEN (Estimation Methods with Probabilistic
Stratified Sampling in CASEN Survey)
Detection of Statistically Significant Combinations of SNPs in
Association Mapping
Finds Missing Links and Metric Confidence Intervals in
Ecological Bipartite Networks
'caret' Applications for Spatial-Temporal Models
Analysis of categorical-variable datasets with missing values
Computerized Adaptive Testing and Decision Trees
Mapping of a Categorical Variable in a Panel Dataset
Analysis of Check-All-that-Apply (CATA) Data
Access the 'Spark Catalog' API via 'sparklyr'
Covariate-Adjusted Tensor Classification in High-Dimensions
Taking the Pain Out of Catching and Handling Conditions
Test, Identify, Select and Mutate Categorical or Continuous
Values
Categorical Data Analysis Program Package
Datasetsfor Categorical Data Analysis by Agresti
Fishery Stock Assessment by Catch Dynamics Models
High Dimensional Factor Analysis and Confounder Adjusted Testing
and Estimation
Community Assembly by Traits: Individuals and Beyond
An R Package for Simulating IRT-Based Computerized Adaptive
Tests
Chronomics Analysis Toolkit (CAT): Periodicity Analysis
Formal Psychological Models of Categorization and Learning
Case-Control and TDT Meta-Analysis Package
Heatmap for Categorical Data using 'plotly'
Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
Generation of IRT Response Patterns under Computerized Adaptive
Testing
Solution Paths for Linear and Logistic Regression Models with
Categorical Predictors, with SCOPE Penalty
Create Catseye Plots Illustrating the Normal Distribution of the
Means
Binary and Categorical Image Similarity Index
Special models for categorical variables
Encode Categorical Variables with Split Information from CART
Computerized Adaptive Testing for Survey Research
Computation of the p-Value for the Exact Conditional
Cochran-Armitage Trend Test
Powerful Test for Survival Data under Non-Proportional Hazards
Accelerated Bayesian Analytics with DAGs
Nonparametric and Cox-Based Estimation of ATE in Competing Risks
Example Data Sets for Causal Inference Textbooks
Tools for Estimating Causal Dose Response Functions
Deriving Expressions of Joint Interventional Distributions and
Transport Formulas in Causal Models
Estimation of Causal Effects with Generalized Additive Models
Matching on Generalized Propensity Scores with Continuous
Exposures
Inferring Causal Effects using Bayesian Structural Time-Series
Models
Learning Stable Structures in Kinetic Systems
MBSTS Models for Causal Inference and Forecasting
An Interface to Specify Causal Graphs and Compute Bounds on
Causal Effects
Causal Effect for Population Attributable Fractions (PAF)
Make, Update, and Query Binary Causal Models
Selection Bias Approach to Sensitivity Analysis for Causal
Effects
Estimation Methods for Causal Inference Based on Inverse
Probability Weighting
Control Charts with Guaranteed In-Control Performance and
Cautious Parameters Learning
Cluster Analysis via Random Partition Distributions
CRISPR Pooled Screen Analysis using Beta-Binomial Test
Contextual Bayesian Anomaly Detection in R
Compare Baseline Characteristics Between Groups
Continuous Analog of a Binomial Distribution
Clustering of Multivariate Binary Data with Dimension Reduction
via L1-Regularized Likelihood Maximization
Statistics Netherlands (CBS) Open Data API Client
Fits Cubic Bezier Spline Functions to Intertemporal and Risky
Choice Data
(Robust) Canonical Correlation Analysis via Projection Pursuit
Concordance Correlation Coefficient for Repeated (and
Non-Repeated) Measures
Combined Cluster and Discriminant Analysis
Distribution-Free Single-Cell Differential Expression Analysis
CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks
Cox Model for Case-Cohort Data with Stratified
Subcohort-Selection
Transforming and Harmonizing CCHS Variables
Cross-Covariance Isolate Detect: a New Change-Point Method for
Estimating Dynamic Functional Connectivity
Convex Clustering Methods and Clustering Indexes
Implementation of Case-Control Optimal Matching
Estimation of Mean Costs in Censored Data
Significance Tests for Canonical Correlation Analysis (CCA)
One and two locus GWAS of binary phenotype with
case-control-population design
Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing
Data
Correct and Cluster Response Style Biased Data
Tools for the Continuous Convolution Trick in Nonparametric
Estimation
Consensus Analysis, Model-Based Clustering, and Cultural
Consensus Theory Applications
Perform Weighted Linear Regression for Calibration Curve
Cognitive Diagnostic Computerized Adaptive Testing
Retrieve Flu Season Data from the United States Centers for
Disease Control and Prevention ('CDC') 'FluView' Portal
Conditional Distance Correlation Based Feature Screening and
Conditional Independence Inference
Interface to the California Data Exchange Center
Quantile Regression for Random Variables on the Unit Interval
Downscaling and Bias Correction via Non-Parametric CDF-Transform
Coordinate Descent Algorithms for Lasso Penalized L1, L2, and
Logistic Regression
Cause-Deleted Life Expectancy Improvement Procedure
Tools to Download and Work with USDA Cropscape Data
Useful Tools for Cognitive Diagnosis Modeling
Components of Canadian Monetary and Credit Aggregates
Phylogenetically Classifies Retention Mechanisms of Duplicate
Genes from Gene Expression Data
Constrained Dual Scaling for Detecting Response Styles
A Complete Deconvolution Method using Sequencing Data
Sampling from Conditional C- and D-Vine Copulas
Benchmark functions for the Special Session and Competition on
Real-Parameter Single Objective Optimization at CEC-2013
R Interface for the C Implementation of CEC Benchmark Functions
Simple and Efficient Pipeline for Electronic Health Record
Annotation
Collection of Common Astronomical Conversion Routines and
Functions
Finds RNASeq Source Tissues Using In Situ Hybridisation Data
Translate Spreadsheet Cell Ranges to Rows and Columns
Functions to fit cell volume distributions and thereby estimate
cell growth rates and division times
Broken Adaptive Ridge AFT Model with Censored Data
Climate and Ecological Niche Factor Analysis
Estimation of the Time-Dependent ROC Curve and AUC for Censored
Survival Data
Linear Regression with a Randomly Censored Covariate
Finite Mixture of Multivariate Censored/Missing Data
Base de Datos de Facil Acceso del Censo 2017 de Chile (2017
Chilean Census Easy Access Database)
Fits Normal and Student-t Censored Regression Model
Changes United States Census Geographic Code into Name of
Location
Access the U.S. Census Bureau's Geocoding A.P.I. System
Show the Strength of Relationships Between Centre and Peripheral
Items
Non-Trivial Balance of Centrifuge Rotors
Cross-Entropy R Package for Optimization
Discriminant Analysis of Time Series in the Presence of
Within-Group Spectral Variability
Context Driven Exploratory Projection Pursuit
Outlier Detection Using the Iterated RMCD Method of Cerioli
(2010)
Identification and Analysis of ceRNA Regulation
Covariance Estimation Regularized by Nuclear Norm Penalties
Access the Canadian Election Study Datasets
Colony Formation Assay: Taking into Account Cellular Cooperation
Functions to Access College Football Play by Play Data
Cause-Specific Framework for Competing-Risk Analysis
Counterfactual Decomposition: MC Integration of the G-Formula
Estimate quantiles using any order Cornish-Fisher expansion
Simple Similarity for User-Based Collaborative Filtering Systems
Canadian Forest Fire Danger Rating System
Generate Citation File Format ('cff') Metadata for R Packages
Identification of Counterfactual Queries in Causal Models
Collaborative Filtering by Reference Classes
Cystic Fibrosis Survival Prediction Model Based on Stanojevic
Model
Compare Groups, Analytically and Graphically
Calculate AUC-type measure when gold standard is continuous and
the corresponding optimal linear combination of variables with
respect to it
R-Based API for Accessing the MSKCC Cancer Genomics Data Server
(CGDS)
Array CGH Data Analysis and Visualization
Conditional Graphical LASSO for Gaussian Graphical Models with
Censored and Missing Values
Fits Conditional Generalized Linear Models
Clean and Analyze Continuous Glucose Monitor Data
Continuous Glucose Monitoring Data Analyzer
Analyzing Glucose and Glucose Variability
Powell Miscellaneous Functions for Teaching and Learning
Statistics
Continuous Time Generalized Rapid Response CUSUM
Statistical Methods and Models for Claims Reserving in General
Insurance
Automatic Colors for Multi-Dimensional Data
Nonparametric Change Detection in Multivariate Linear
Relationships
Geometrically Inspired Multivariate Changepoint Detection
Package to Calculate the Influence of the Data on a Changepoint
Segmentation
Changepoint Analysis for Multivariate Time Series
Methods for Nonparametric Changepoint Detection
A Collection of Change-Point Detection Methods
Change-Point Estimation for Expensive and High-Dimensional
Models
Change-Points Detections for Changes in Variance
Change Point Estimation for Clustered Signals
Change Point Tests for Joint Distributions and Copulas
Markov Model for Online Multi-Channel Attribution
Shiny Web Application for the Multichannel Attribution Problem
Loglikelihood Adjustments for Econometric Models
Charge Transfer Rates and Charge Carrier Mobilities
Simplified Language for Plots and Charts
Check the Basic Validity of a (Function) Argument
Check-Fields and Check-Boxes for 'rmarkdown'
Checks if a Number is Valid Using the Luhn Algorithm
Install Packages from Snapshots on the Checkpoint Server for
Reproducibility
Check the Properties of Common R Objects
Analysis and Visualisation of Ecological Communities
Tools for Working with Data During Statistical Analysis
Calibration Functions for Analytical Chemistry
A Cheminformatics Modeling Laboratory for Fitting and Assessing
Machine Learning Models
Multivariate Statistical Analysis in Chemometrics
Exploratory Chemometrics for 2D Spectroscopy
Functions Supporting Packages ChemoSpec and ChemoSpec2D
Multiple Testing Methods for Exploratory Research
Read, Write, Create and Explore Chess Games
Change-in-Estimate Approach to Assess Confounding Effects
Closest History Flow Field Forecasting for Bivariate Time Series
Partitioning Chi-Squared and Tau Index for Three-Way Contingency
Tables
'Compressive' Hierarchical Kernel Clustering Toolbox
Data and Methods Around Reference Values in Pediatrics
Mapas de las Divisiones Politicas y Administrativas de Chile
(Maps of the Political and Administrative Divisions of Chile)
Processing Chill and Heat Models for Temperate Fruit Trees
Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Miscellaneous Tools for Chinese Text Mining and More
Toolkit of Helper Functions to Pre-Process Amplification Data
Nonparametric Methods for Identifying Differential Enrichment
Regions with ChIP-Seq Data
A Post Hoc Analysis for Pearson's Chi-Squared Test for Count
Data
Convert Antipsychotic Doses to Chlorpromazine Equivalents
Estimation and Hypothesis Testing for Threshold Regression
Thermodynamic Calculations and Diagrams for Geochemistry
Amend, Augment and Aid Analysis of John Snow's Cholera Map
Cholesky Decomposition of the Wishart Distribution
Simplify the Creation of Choropleth Maps in R
Contains an Administrative-Level-1 Map of the World
Contains Maps Used by the 'choroplethr' Package
Generation of Different Animated Christmas Cards
Interface to Chromosome Counts Database API
Interactive Genomic Visualization of Biological Data
Chronological Objects which can Handle Dates and Times
Chunkwise Text-File Processing for 'dplyr'
Functions for Conditional Hypergeometric Distributions
Causal Inference in Case-Control Studies
Meta-Clustering for Single-Cell Data Integration and Evaluation
Estimating and Testing Direct Effects in Directed Acyclic Graphs
using Estimating Equations
Weighted summary of cumulative incidence functions
Toolbox for Connectivity Informatics Technology Initiative
('CIFTI') Files
Tools for Reading, Writing, Viewing and Manipulating CIFTI Files
Causal Inference for Multiple Treatments with a Binary Outcome
A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
Ready-to-Use Curated Gene Sets for 'cinaR'
Deciphering Central Informative Nodes in Network Analysis
Centered Isotonic Regression and Dose-Response Utilities
Curve Text Elements in 'Shiny' Using 'CircleType.js'
Maximum Likelihood Analysis of Circular Data
Statistical Analysis of Circular Data using Nonnegative
Trigonometric Sums (NNTS) Models
Detection of Outliers in Circular-Circular Regression
Spatial and Spatio-Temporal Bayesian Model for Circular Data
Circular Statistics, from "Topics in Circular Statistics" (2001)
Extreme Value Analysis for Circular Data
Analysis and Visualization of Circular Data
Common and Individual Structure Explained for Multiple Graphs
CIT Breast Cancer Molecular SubTypes Prediction
CIT Colon Cancer Molecular SubTypes Prediction
Confidence or Prediction Intervals, Quantiles, and Probabilities
for Statistical Models
Customer Intelligence Tool for Rapid Understandable Segmentation
Visualization of structure and contents of a database
Track Flows of Water Through an Urban System
Confidence Intervals Utilizing Uncertain Prior Information
Kabaila and Giri (2009) Confidence Interval
Copula-Based Joint Analysis of Multiple Phenotypes
Heterogeneous Effects Analysis of Conjoint Experiments
Client for the Comprehensive Knowledge Archive Network ('CKAN')
API
Composite Kernel Association Test for Pharmacogenetics Studies
Composite Kernel Machine Regression Based on Likelihood Ratio
Test
Optimal, Fast, and Reproducible Univariate Clustering
Forward-in-Time Simulation and Tallying of Pairwise
Relationships
Measuring Morphological Diversity and Evolutionary Tempo
C++ Implementations of Phylogenetic Cladogenesis Calculations
Classical Age-Depth Modelling of Cores from Deposits
Time Series Modeling for Climate Change Proxies
Distribution-Free Tests of Non-Nested Models
Classes and Methods for "Class Comparison" Problems on
Microarrays
Classes and Methods for "Class Discovery" with Microarrays or
Proteomics
Construct Graphs of S4 Class Hierarchies
Generates a Visualization of Classifier Performance as a Grid of
Diagnostic Plots
Explore classification models in high dimensions
To Inspect and Manipulate Data; and to Keep Track of This
Process
Cleaning Geometries from Spatial Objects
A Tidy Data Model for Natural Language Processing
Testbench for Univariate Time Series Cleaning
Simultaneous Variables Clustering and Regression
Composite Likelihood Estimation for Spatial Data
Clustering and Link Prediction Evaluation in R
Helpers for Developing Command Line Interfaces
Model-Based Clustering of Categorical Sequences
Mixtures of Continuous Time Markov Models
Semi-Automatic Preprocessing of Messy Data with Change Tracking
for Dataset Cleaning
Analyzes Clickstreams Based on Markov Chains
Execute Command Line Programs Interactively
Easily Download and Visualise Climate Data from CliFlo
Complex-Valued Wavelet Lifting Estimators of the Hurst Exponent
for Irregularly Sampled Time Series
Censoring Data and Likelihood-Based Correlation Estimation
Interface to Download Meteorological (and Hydrological) Datasets
Estimating Climate Stability from Climate Model Data
Climate Tools (Series Homogenization and Derived Products)
Climate Variability Indices for Ecological Modelling
Climate Classification According to Several Indices
Climate Downscaling Library for Daily Climate Model Output
Constrained L1-minimization for Inverse (covariance) Matrix
Estimation
Set of Tools to Compute Various Climate Indices
Simulation and Analysis Tools for Clinical Dose Response
Modeling
Clinical Trial Design and Data Analysis Functions
Summary Measures for Clinical Trials with Survival Outcomes
Recalibration Methods for Improved Clinical Utility of Risk
Scores
Hemodynamic Calculations from Clinical Monitoring
Clinical Natural Language Processing using 'spaCy', 'scispaCy',
and 'medspaCy'
General Utility Functions for Analysis of Clinical Data
Calculating Likelihoods by Pedigree Paring
Read and Write from the System Clipboard
Constrained Inference for Linear Mixed Effects Models
Fitting Exact Conditional Logistic Regression with Lasso and
Elastic Net Penalties
Sparse Conditional Logistic Regression for Matched Studies
Seeking and Finding Clones in Copy Number and Sequencing Data
Composite Likelihood Inference and Diagnostics for Replicated
Spatial Ordinal Data
Interface to the Google Cloud Machine Learning Platform
Curve Linear Regression via Dimension Reduction
Central Limit Theorem Experiments (Theoretical and Simulation)
Cluster-Robust (Sandwich) Variance Estimators with Small-Sample
Corrections
Simultaneous Semi-Parametric Estimation of Clustering and
Regression
Simultaneous Detection of Clusters and Cluster-Specific Genes in
High-Throughput Transcriptome Data
Statistical Methods for Analyzing Clustered Matched Pair Data
Clustering Dose-Response Curves and Fitting Appropriate Models
to Them
Clusters of Effects Curves in Quantile Regression Models
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Performs Tests for Cluster Tendency of a Data Set
Analyze Clustered Data with Generalized Linear Models using the
Cluster Bootstrap
Causal Effects from Observational Studies with Clustered
Interference
Location and Visualization of Clustered Somatic Mutations
Random Cluster Generation (with Specified Degree of Separation)
Identifying clusters in genomics data by recursive partitioning
Optimal Distance-Based Clustering for Multidimensional Data with
Sequential Constraint
Unbiased Single-Cell Transcriptomic Data Cell Type
Identification
Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM,
PBS/Torque)
Integrative Clustering for Heterogeneous Biomedical Datasets
Power Calculations for Cluster-Randomized and Cluster-Randomized
Crossover Trials
Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids
and Affinity Propagation Clustering
Reproducibility of Gene Expression Clusters
Calculate Cluster-Robust p-Values and Confidence Intervals
Searching for Optimal Clustering Procedure for a Data Set
Assessment of Stability of Individual Objects or Clusters in
Partitioning Solutions
Hierarchical Clustering with Spatial Constraints
K-Means Clustering with Build-in Missing Data Imputation
k-Prototypes Clustering for Mixed Variable-Type Data
Variable Selection in Clustering by Mixture Models for Discrete
Data
Prediction and Clustering on the Torus by Conformal Prediction
Clustering Trajectories Anchored at Intervention Time
Monitor Changes in Cluster Solutions of Dynamic Datasets
Methods for Joint Dimension Reduction and Clustering
Visualise Clusterings at Different Resolutions
Interactive Document for Working with Cluster Analysis
Clustering of Variables Around Latent Variables
Variable Selection for Gaussian Model-Based Clustering
Gaussian-Based Visualization of Gaussian and Non-Gaussian
Model-Based Clustering
Tools for Customer Lifetime Value Estimation
Covariance Matrix Adapting Evolutionary Strategy
Covariance Matrix Adaptation Evolution Strategy
Commercial Modular Aero-Propulsion System Simulation Data Set
Representation Tool For Output Of Connectivity Map (CMap)
Analysis
Implementation of the Conic Multivariate Adaptive Regression
Splines in R
Matching Algorithms for Causal Inference with Clustered Data
Computer Model Calibration for Deterministic and Stochastic
Simulators
An Implementation of the 'Congruent Matching Cells' Method
Framework for Building Interfaces to Shell Commands
Bi-Level Selection of Conditional Main Effects
Collective Matrix Factorization for Recommender Systems
Computational Methods for Numerical Analysis
Subdistribution Analysis of Competing Risks
Use IPW to Estimate Treatment Effect under Competing Risks
Analysis of Competing Risks Using Quantile Regressions
R Implementation of Congruent Matching Profile Segments Method
Analysis of Cardiac Magnetic Resonance Images
Misc Functions of the Center for Mathematical Research
Interactive Document for Working with Confusion Matrix
Statistical Methods for Composite Material Data
The Complex Multivariate Gaussian Distribution
Causal Modeling with Coincidence Analysis
Common Network Asset Indices Methodology (CNAIM)
Optimizing Consistency and Coverage in Configurational Causal
Modeling
Canonical Non-Symmetrical Correspondence Analysis in R
Complex-Valued Wavelet Lifting for Signal Denoising
Complex-Valued Wavelet Lifting for Univariate and Bivariate Time
Series Analysis
Pre-process DNA Copy Number (CN) Data for Detection of CN Events
Fast Algorithms for Frequency-Preserving Null Models in Ecology
Dirichlet Multinomial Modeling of Relative Abundance Data
A Versatile Toolkit for Copy Number Variation Relationship Data
Analysis and Visualization
Bayesian "Now-Cast" Estimation of Event Probabilities in
Multi-Party Democracies
Biclustering via Latent Block Model Adapted to Overdispersed
Count Data
Constrained B-Splines (Sparse Matrix Based)
COmbat CO-Normalization Using conTrols (COCONUT)
Statistical Comparisons of Two or more Alpha Coefficients
Output Analysis and Diagnostics for MCMC
A Basic Set of Functions for Compositional Data Analysis
Markov chain Monte Carlo burn-in based on "bridge" statistics
Transformation-Free Linear Regression for Compositional Outcomes
and Predictors
Automated C Code Generation for 'deSolve', 'bvpSolve'
Automatic Codebooks from Metadata Encoded in Dataset Attributes
Analysis of R Code for Reproducible Research and Code
Comprehension
Generation of Code Names for Organizations, People, Projects,
and Whatever Else
Deterministic Categorization of Items Based on External Code
Data
The CODEX (Comorbidity, Obstruction, Dyspnea, and Previous
Severe Exacerbations) Index: Short and Medium-Term Prognosis in
Patients Hospitalized for Chronic Obstructive Pulmonary Disease
(COPD) Exacerbations
Alternative Factor Coding Matrices for Linear Model Formulae
Robust Coefficient Alpha and Omega with Missing and Non-Normal
Data
Species coexistence modeling and analysis
Chronological Ordering for Fossils and Environmental Events
Cognitive Mapping Tools Based on Coding of Textual Sources
Authentication for 'Shiny' Apps with 'Amazon Cognito'
Simulation of Cohort Platform Trials for Combination Treatments
Contextualization and Evaluation of COI-5P Barcode Data
Conditional Inference Procedures in a Permutation Test Framework
Get 'Cryptocurrencies' Market Cap Prices from Coin Market Cap
Simultaneous Confidence Interval for Multinomial Proportion
Composite Indicator Construction and Analysis
Consistent Monitoring of Stationarity and Cointegrating
Relationships
Parameter Estimation and Inference in a Cointegrating Regression
Constrained Optimization on Linear Function
Collapses Levels, Computes Information Value and WoE
Interactive Collapsible Tree Diagrams using 'D3.js'
Quickly and Neatly Collect Arguments from One Environment to
Pass to Another
Check for Namespace Collisions Across Packages and Functions on
CRAN
Effects of Collinearity in Distributed Lag and Other Models
Collocation Inference for Dynamic Systems
Collapsed Latent Position Cluster Model for Social Networks
Auxiliary Package for Package 'CollapsABEL'
Dengue Cases and Climate Variables in Colombo Sri Lanka
Colocalisation Tests of Two Genetic Traits
Conduct Co-Localization Analysis of Fluorescence Microscopy
Images
Check Color Palettes for Problems with Color Vision Deficiency
Distance Metrics for Image Color Similarity
Implementation of Colored Independent Component Analysis and
Spatial Colored Independent Component Analysis
Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format
Images
Plot and add custom coloring to Venn diagrams for 2-dimensional,
3-dimensional and 4-dimensional data
Coloring Wildlife Distributions in Space-Time
Colorize Old Images Using the 'DeOldify' Image Colorization API
Color Palettes using Colormaps Node Module
Optimized Rendering of Fold Changes and Confidence Values
Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams
A Toolbox for Manipulating and Assessing Colors and Palettes
Color Calculations with Emphasis on Spectral Data
Tools for colors in a Hue-Saturation-Value (HSV) color model
A Colour Picker Tool for Shiny and for Selecting Colours in
Plots
Creates Co-Occurrence Matrices of Spatial Data
Analysis of Concept Maps and Concept Landscapes
A Combined Association Test for Genes using Summary Statistics
Calculate Scores and Marks for Track and Field Combined Events
Estimation of Optimal Portfolio Weights by Combining Simple
Portfolio Strategies
Construction Methods of some Series of PBIB Designs
Selection and Ranking of Omics Biomarkers Combinations Made Easy
Exact Test from the Combinations of Mutually Exclusive
Alterations (CoMEt) Algorithm
Models and Equations for Human Comfort Research
Commonly Used Functions for R Shiny Applications
Computational Methods for Immune Cell-Type Subsets
Print Nicely Formatted Comments for Use in Script Files
Useful Libraries for Building a Java Based GUI under R
High Performance CommonMark and Github Markdown Rendering in R
JAR Files of the Apache Commons Mathematics Library
Comparative Phylogeographic Analysis using the Community Tree
Framework
Feature Extraction and Model Estimation for Audio of Human
Speech
Creates empty plots with compact axis notation
Comparison Functions for Clustering and Record Linkage
Compare Two Correlated C Indices with Right-censored Survival
Outcome
Interface to Diverse Estimation Methods of Causal Networks
Statistical Functions for the Design of Studies with Composite
Endpoints
Do a Git Style Diff of the Rows Between Two Dataframes with
Similar Structure
comparison of medical forms in CDISC ODM format
Correct for Verification Bias in Diagnostic Accuracy & Agreement
Multivariate Likelihood Ratio Calculation and Evaluation
Comparison of Cumulative Incidence Between Two Groups Under
Competing Risks
Comparison of Survival Curves Between Two Groups
Conformational Manipulations of Protein Atomic Structures
A Graphical User Interface for Antitrust and Trade Practitioners
Calculate the Proportion of Permutations in Line with an
Informative Hypothesis
Create Complex UpSet Plots Using 'ggplot2' Components
Robust Linear Regression with Compositional Data as Covariates
Compositional, Multivariate and Univariate Time Series Outlier
Ensemble
Univariate Feature Selection and Compound Covariate for
Predicting Survival
Distribution Function of Quadratic Forms in Normal Variables
Composite-Likelihood Based Analysis of Random Fields
Flexible Framework for Simulating Community Assembly
Interface with the United Nations Comtrade API
Calculate the AQI from Pollutant Concentration
Calculate the Dutch Air Quality Index (LKI)
Human-Friendly Text from Unknown Strings
Optimisation with Continuous Convex Piecewise (Linear and
Quadratic) Functions
An Alternative to the Kruskal-Wallis Based on the Kendall Tau
Distance
Copy Number Profile Curve-Based Association Test
Computes & Plots Compatibility (Confidence), Surprisal, &
Likelihood Distributions
Approximate Conditional Inference for Logistic and Loglinear
Models
Parameter estimation in conditional GEE for recurrent event gap
times
Computation of P Values and Bayes Factors for Conditioning Data
Control How Many Times Conditions are Thrown
Conditional Density Estimation with Neural Network Conditional
Mixtures
Condition Number Regularized Covariance Estimation
Estimation of the Conditional Survival Function for Ordered
Multivariate Failure Time Data
Conditional Truncated Multivariate Normal Distribution
Query-Driven Pipeline Execution and Query Templates
Conditional Visualization for Statistical Models
Interactive Conditional Visualization for Supervised and
Unsupervised Models in Shiny
Primal or Dual Cone Projections with Routines for Constrained
Regression
Visualization and Analysis of Statistical Measures of Confidence
Confidence Estimation of Environmental State Classifications
Manage Environment Specific Configuration Values
Package to Parse an INI File, Including Variable Interpolation
An Implementation of Parsing and Writing Configuration File
(JSON/INI/YAML/TOML)
Descriptive Interpretations of Confidence Intervals
Confidence Interval for the Univariate Population Variance
without Normality Assumption
An Alternative Conflict Resolution Strategy
Transductive and Inductive Conformal Predictions for
Classification Problems
Diagnostics for Confounding of Time-Varying and Other Joint
Exposures
Configural Frequencies Analysis Using Log-Linear Modeling
Estimates and Bounds for the False Discovery Proportion, by
Permutation
Distance Metrics for Trees Generated by Congreve and Lamsdell
Correlation Guided Network Integration (CoNI)
Algorithms for Fitting Circles, Ellipses and Conics Based on the
Work by Prof. Nikolai Chernov
An Implementation of Conjoint Analysis Method
A package to check the cancellation axioms of conjoint
measurement
A Parametric Method for Generating Synthetic Data
Estimations using Conley Standard Errors
Contingency Measure-Based Networks for Binary Time Series
Organize and Curate Your Content Within 'RStudio Connect'
Tools for Working with Connectivity Data
Conover-Iman Test of Multiple Comparisons Using Rank Sums
Computation of Parameters Used in Preliminary Assessment of
Conservation Status
Identifying Conservation Prioritization Methods Based on Data
Availability
Partial Linear Least-Squares Regression using Constrained
Splines
Compute the Median Ranking(s) According to the Kemeny's
Axiomatic Approach
Classification and Clustering of Preference Rankings
Fits Regression & ARMA Models Subject to Constraints to the
Coefficient
Reference on Constants, Units and Uncertainty
Identify Event Sequences Using Time Series Joins
Constrained, Covariance-Matching Constrained and Universal Point
or Block Kriging
Models Spatially Continuous and Discrete Population Genetic
Structure
Social Contact Matrices for 152 Countries
Clustering and Classification with the Contaminated Normal
An Interface for Content-Based Identifiers
'a la Carte' on Text (ConText) Embedding Regression
Contouring of Non-Regular Three-Dimensional Data
Create Contour Plots from Data or a Function
Plots x,y,z Co-Ordinates in a Contour Map
A Tiny Contribution Table Generator Based on 'ggplot2'
Quantile Comparison for Two-Sample Right-Censored Survival Data
Convert Gene IDs Between Each Other and Fetch Annotations from
Biomart
Disciplined Convex Programming in R using 'Convex.jl'
Income Concentration Analysis with Complex Survey Samples
Probabilistic Species Co-Occurrence Analysis in R
Co-Operation: Fast Covariance, Correlation, and Cosine
Similarity Operations
Important Concepts of Cooperative Game Theory
Cooperative Aspects of Linear Production Programming Problems
Cooperative aspects of optimal trees in weighted graphs
Automated Cleaning of Occurrence Records from Biological
Collections
General Bivariate Copula Theory and Many Utility Functions
Fitting the copCAR Regression Model for Discrete Areal Data
Copula-Based Semiparametric Analysis for Time Series Data with
Detection Limits
Coverage Probability Excursion (CoPE) Sets
Estimating Copula Entropy and Transfer Entropy
Copula-Based Estimation and Statistical Process Control for
Serially Correlated Time Series
Copula Markov Model with Dependent Censoring
Association Analysis of Bivariate Survival Data Based on Copulas
Copula-Based Regression Models for Bivariate Censored Data
Copula Based Bivariate Beta-Binomial Model for Diagnostic Test
Accuracy Studies
Estimation of Distribution Algorithms Based on Copulas
Copula Mixed Models for Multivariate Meta-Analysis of Diagnostic
Test Accuracy Studies
Computing Response Similarity Indices for Multiple-Choice Tests
The COR for Optimal Subset Selection in Distributed Estimation
Apply 'colorffy' Color Gradients Within 'shiny' Elements
Collection of Rudimentary Bioinformatics Tools
Generate High-Dimensional Binary Data with Correlation
Structures
Community Estimation in G-Models via CORD
Set-Based Differential Covariance Testing for Genomics
Programmatic Analysis of Sediment Cores Using Computed
Tomography Imaging
Classification, Regression and Feature Evaluation
R Binding for the 'Certifiably Optimal RulE ListS (Corels)'
Learner
Core Functionality for Simulating Quantities of Interest from
Generalised Linear Models
TDT for compound heterozygous and recessive models
Hidden Markov Models of Character Evolution
Record Linkage, Incorporating Imputation for Missing Agreement
Patterns, and Modeling Correlation Patterns Between Fields
The Clustering of Regression Models Method
Count Regression for Correlated Observations with the
Beta-Binomial
Collection of Scripts for Interface Between 'Cornerstone' and
'R'
Confounding Robust Independent Component Analysis for Noisy and
Grouped Data
The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Dataset
Efficient Estimation of Covariance and (Partial) Correlation
Statistics and Data Sets for Corpus Frequency Data
A 'Shiny' App for Exploration of Text Collections
Power Calculations for Assessing Correlates of Risk in Clinical
Efficacy Trials
Managing, Querying and Analyzing Tokenized Text
Implementation of 2D Correlation Analysis in R
Correlation Arrays and 2-Sample Correlation Matrices
Nonparametrics with Clustered Binary and Multinomial Data
Correcting the Coverage of Credible Sets from Bayesian Genetic
Fine Mapping
Finding Associations in Position-Wise Aligned DNA Sequence
Dataset
Correct Overloaded Peaks from GC-APCI-MS Data
Functions and Methods for Correspondence Regression
Speed Up Exploratory Data Analysis (EDA) with the Correlation
Funnel
Explore Correlations Between Variables in a Machine Learning
Model
Estimate Correlations Between Repeatedly Measured Endpoints
(E.g., Reliability) Based on Linear Mixed-Effects Models
Modeling Correlational Magnitude Transformations in
Discretization Contexts
Arbitrary Bounding of Series and Time Series Objects
Some Empiric and Nonparametric Copula Models
Tools for processing data after a Genome Wide Association Study
Bound Constrained Optimal Sample Size Allocation
Tools for estimating and predicting the cosinor model
Extended Tools for Cosinor Analysis of Rhythms
Mutational Signatures from COSMIC (Catalogue of Somatic
Mutations in Cancer)
Functions for cosmological distances, times, luminosities, etc
Fit Regularized Nonparametric Regression Models Using COSSO
Penalty
Copula-Based Semiparametric Models for Spatio-Temporal Data
Connect to and Work with CouchDB Databases
Locates and Counts Pixels Within Color Range(s) in Images
Estimation and Inference Methods for Counterfactual Analysis
Creating Null and Counternull Distributions to Find Counternull
Values
Comprehensive Automatized Evaluation of Distribution Models for
Count Data
Discrete Response Regression for High-Dimensional Data
Penalized Estimation of Flexible Hidden Markov Models for Time
Series of Counts
Flexible Univariate Count Models Based on Renewal Processes
Mean and Variance Modeling of Count Data
Convert Counts to Fragments per Kilobase of Transcript per
Million (FPKM)
Transform Counts in RNA-Seq Data Analysis
Quantify United States County-Level Flood Measurements
Convert from UTC to Local Time for United States Counties
A Residue-Residue Contact Detecting Method
Local Polynomial Regression of State Dependent Covariates in
State-Space Models
Tests on Properties of Space-Time Covariance Functions
Brownian Motion Processes for 'nlme'-Models
Combine Partial Covariance / Relationship Matrices
Produce Forest Plots to Visualize Covariate Effects
Test for Equality of Covariance Matrices
Load and Analyze Live Data from the COVID-19 Pandemic
Selected 'Drugbank' Drugs for COVID-19 Treatment Related Data in
R Format
Pulling Clean Data from Covid19india.org
The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Italy Dataset
The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Data in Sri
Lanka
COVID-19 Cases in Switzerland and Principality of Liechtenstein
Client for Delphi's 'COVIDcast Epidata' API
Downloading, Reading and Analyzing PNAD COVID19 Microdata
Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease
2019)
Estimate the Unit-Wide Probability of COVID-19
Subnational Data for COVID-19 Epidemiology
Latent Class Models with Covariate Effects on Underlying and
Measured Variables
A simultaneous regression model for the mean and covariance
Robust Covariance Estimation via Nearest Neighbor Cleaning
Model-Free Covariate Selection in High Dimensions
Tests for Determining if the Covariance Structure of
2-Dimensional Data is Separable
VITA, IG and PLSIM Simulation for Given Covariance and Marginals
Statistical Tools for Covariance Analysis
Performs Segmented Linear Regression on Two Independent
Variables
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Messages, Warnings, Strings with Ascii Animals
Duration-Based Quantities of Interest for the Cox Proportional
Hazards Model
Variable Selection for Cox's Model with Interval-Censored Data
Cox-Type Models for Interval-Censored Data
Cox Regression with Firth's Penalized Likelihood
Sparse Estimation of Cox Proportional Hazards Models via
Approximated Information Criterion
Stochastic Gradient Descent log-Likelihood Estimation in Cox
Proportional Hazards Model
Cox Regression (Proportional Hazards Model) with Multiple Causes
and Mixed Effects
R-Squared Measure Based on Partial LR Statistic, for the Cox PH
Regression Model
Cox Proportional Hazards Regression for Right-Truncated Data
Confirmatory Path Analysis through the d-sep tests
Bayesian Meta Analysis for Studying Cross-Phenotype Genetic
Associations
Methods to perform Common Principal Component Analysis (CPCA)
Efficient and Customized Preconditioned Conjugate Gradient
Method for Solving System of Linear Equations
Association Between Methylation and a Phenotype of Interest
CpG Filtering Method Based on Intra-Class Correlation
Coefficients
Sequential and Batch Change Detection Using Parametric and
Nonparametric Methods
Correction of the P-Value after Multiple Coding in Generalized
Linear Models
Conceptual Properties Norming Studies as Parameter Estimation
Composition of Probabilistic Preferences (CPP)
Fast Implementation of Dijkstra Algorithm
The Conditional Probability Function of a Competing Event
Conditional Probit Model for Analysing Continuous Outcomes
Functions for Working with Danish CPR Numbers
Constructs a Correlated Pseudo-Marginal Sampler
Load CPS Microdata into R Using the 'Census Bureau Data' API
Change-Point Detection by Sample-Splitting Methods
Nonparametric Change Point Estimation for Survival Data
Simulating Survival Data from Change-Point Hazard Distributions
A Toolbox for Using the CPS’s Voting and Registration Supplement
Quantile, Composite Quantile Regression and Regularized Versions
Conditional Maximum Likelihood for Quadratic Exponential Models
for Binary Panel Data
Multivariate Nonparametric Cramer-Test for the
Two-Sample-Problem
Network Analysis of Dependencies of CRAN Packages
Download Logs from the 'RStudio' 'CRAN' Mirror
Package Directives and Collaboration Networks in CRAN
RStudio Addin for Searching Packages in CRAN Database Based on
Keywords
Conditional Random Sampling Sparse Matrices
Fit Continuous-Time Correlated Random Walk Models to Animal
Movement Data
Censored Regression with Conditional Heteroscedasticity
Univariate Analysis of Cluster Trials with Multiple Outcomes
Clustering of Genomic Regions Analysis Method
Tools for Managing SSH and Git Credentials
Functions for calculating the CreditMetrics risk model
Toolkit for Credit Modeling, Analysis and Visualization
Evaluation of Credit Risk with Structural and Reduced Form
Models
Simple Conjoint Tidying, Analysis, and Visualization
Obtain and Visualize Regulome-Gene Expression Correlations in
Cancer
A Probabilistic Approach to Reconstruct Past Climates Using
Biological Climate Proxies
Conditional Random Fields for Labelling Sequential Data in
Natural Language Processing
Analyze Cricketers and Cricket Teams Based on ESPN Cricinfo
Statsguru
Group-Based Modelling of Longitudinal Data
Access Crime Data from the Open Crime Database
Statistical Methods for Crime Series Linkage
A Comprehensive Set of Functions to Clean, Analyze, and Present
Crime Data
Fits a Model that Partitions the Covariate Space into Blocks in
a Data- Adaptive Way
An Implementation of the Critical Path Method
Continual Reassessment Method (CRM) for Phase I Clinical Trials
CCMN and Other Normalization Methods for Metabolomics Data
Object-Oriented Implementation of CRM Designs
Cellwise Robust M-Regression and SPADIMO
Downloads and Builds datasets for Climate Reference Network
Implementation Helper for '[' and '[<-' of Custom Matrix-Like
Types
A Dashboard to Visualize Scientific Workflows in 'Cromwell'
Create an HTML Vertical Timeline from a Data Frame in
'rmarkdown' and 'shiny'
Schedule R Scripts and Processes with the 'cron' Job Scheduler
Open Data of Agricultural Production of Crops of Peru
Crop Growing Degree Days and Agrometeorological Calculations
Changepoints for a Range of Penalties (CROPS)
Access Cropland Data Layer Data via the 'CropScape' Web Service
Climate Crop Zoning Based in Air Temperature for Brazil
Apply Functions to All Combinations of List Elements
Analysis and Search of Crossover Designs
Confidence intervals for crossover points of two simple
regression lines
Joint Distribution of Number of Crossings and Longest Run
Inter-Widget Interactivity for HTML Widgets
Verbal Autopsy Data Transformation for InSilicoVA and InterVA5
Algorithms
Classes and Methods for Cross Validation of "Class Prediction"
Algorithms
Rename and Encode Data Frames Using External Crosswalk Files
Constrained Regression Model for an Ordinal Response and Ordinal
Predictors
Recurrence Quantification Analysis for Categorical and
Continuous Time-Series
Bias-Corrected Variance for Competing Risks Regression with
Clustered Data
Penalized Variable Selection in Competing Risks Regression
Competing risks regression for Stratified and Clustered data
Stepwise Covariate Selection for the Fine & Gray Competing Risks
Regression Model
A Robust and Powerful Test of Abnormal Stock Returns in
Long-Horizon Event Studies
Nonlinear Regression Parameters Estimation by 'CRS4HC' and
'CRS4HCe'
Tidying and Analyzing 'Coursera' Research Export Data
Obtain Suggested Coordinate Reference System Information for
Spatial Data
Doubly Robust Inverse Probability Weighted Augmented GEE
Estimator
Sample Size Estimation Functions for Cluster Randomized Trials
Interface to Climatic Research Unit Time-Series Version 3.21
Data
Changing the Reference Group without Re-Running the Model
Identifying Cryptic Relatedness in Genetic Association Studies
Download Crypto Currency Data from 'CoinMarketCap' without 'API'
Calculate the Relative Crystallinity of Starch by XRD and FTIR
A Cross-Scale Analysis Tool for Model-Observation Visualization
and Integration
Bounds on Distributional Treatment Effect Parameters
Functions for Conditional Simulation in Regression-Scale Models
Frequent Contiguous Sequential Pattern Mining of Text
CRISPR-Based Salmonella Enterica Serotype Analyzer
Connectivity Scores with Factor Analysis
Collecting Counter Strike Global Offensive Data
Climate Services' Indicators Based on Sub-Seasonal to Decadal
Predictions
Cost-Sensitive Multi-Criteria Ensemble Selection for Uncertain
Cost Conditions
Complete Discrete Fourier Transform (DFT) and Periodogram
A Tool for the Correlates of State Policy Project Data
Data Only: The Correlates of State Policy Project Dataset
Methods to Test Hypotheses on the Distribution of Spatial Point
Processes
csSAM - cell-specific Significance Analysis of Microarrays
Selection of Number of Clusters via Normalized Clustering
Instability
Substantive significance testing for regression estimates and
marginal effects
Covariate Specific Treatment Effect (CSTE) Curve
Assessing Skill of Climate Forecasts on Seasonal-to-Decadal
Timescales
Combined Selection and Uncertainty Visualiser (CSUV)
Read and Write CSV Files with Selected Conventions
Read and Write CSV on the Web (CSVW) Tables and Metadata
Import and Export CSV Data with a YAML Metadata Header
Contingency Table Analysis Based on ML Fitting of MPH Models
Interactive Application for Working with Contingency Tables
A Method for 'Connecting The Dots' in Weighted Graphs
Closed Testing with Globaltest for Pathway Analysis
A Text Mining Toolkit for Chinese Document
Estimating the Parameters of a Continuous-Time Markov Chain from
Discrete-Time Data
Modeling Animal Movement with Continuous-Time Discrete-Space
Markov Chains
Collaborative Targeted Maximum Likelihood Estimation
Censored and Truncated Quantile Regression
Retrieve and Analyze Clinical Trials in Public Registers
Query Data from U.S. National Library of Medicine's Clinical
Trials Database
Assess the Stability of Candidate Housekeeping Genes
Continuous Time Structural Equation Modelling
Continuous Time SEM - 'OpenMx' Based Functions
Interactive Document for Working with Classification Tree
Analysis
A Class of Mixture Models for Ordinal Data
Adaptive Multivariate Integration over Hypercubes
Computation of a Cubic B-Spline Basis and Its Derivatives
Rule- And Instance-Based Regression Modeling
R Interface for the RAPIDS cuML Suite of Libraries
Charles's Utility Function using Formula
Tools, Measures and Statistical Tests for Cultural Evolution
Analyze Multivariate Phenotypes by Combining Univariate Results
Change Point Detection in Genomic Sequences
Cumulative Percent Decay Curve Generator
Partial Function Application with %<%, %-<%, and %><%
Confidence Intervals for the Current Status Model
Finds Binary Outcome Designs Using Stochastic Curtailment
Multiple Curve Comparisons Using Parametric Bootstrap
Tukey Curve Depth and Distance in the Space of Curves
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
Evaluation Metrics for Customer Scoring Models Depending on
Binary Classifiers
Customized Training for Lasso and Elastic-Net Regularized
Generalized Linear Models
Customizable Higher-Order Recipe Step Functions
Costs Allocation for the Installation of an Elevator
Cumulative Sum (CUSUM) Charts for Monitoring of Hospital
Performance
Compute Decision Interval and Average Run Length for CUSUM
Charts
CUTOFF: A Spatio-temporal Imputation Method
Determine and Evaluate Optimal Cutpoints in Binary
Classification Tasks
Optimal Equal-HR Method to Find Two Cutpoints for U-Shaped
Relationships in Cox Model
An R package to perform LPUE standardization and stock
assessment of the English Channel cuttlefish stock using a
two-stage biomass model
Compute Expected Shortfall and Value at Risk for Continuous
Distributions
Conditional Variance Estimator for Sufficient Dimension
Reduction
Cross-Validated Area Under the ROC Curve Confidence Intervals
Estimation of the Calibration Equation with Error-in
Observations
Coefficient of Variation (CV) with Confidence Intervals (CI)
Efficient Design and Analysis of Cluster Randomized Trials
Tests for the Equality of Coefficients of Variation from
Multiple Groups
Lasso Penalized Precision Matrix Estimation
Cramer von Mises Tests for Discrete or Grouped Distributions
Calculate the predictive squared correlation coefficient
Compute Risk Scores for Cardiovascular Diseases
Fast Cross-Validation via Sequential Testing
Cross-validation tools for regression models
Regularized Estimators of Covariance Matrices with CV Tuning
Tools to Create, Modify and Manage 'CWB' Corpora
Miscellaneous Functions for Math, Plotting, Printing,
Statistics, Strings, and Tools
A Toolbox for Modelling Species Coexistence in R
extend cxxfunction by saving the dynamic shared objects
Cycle Routing and Data for Cycling Advocacy
Survival Modeling with a Periodic Hazard Function
Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Circular-Linear Copulas with Angular Symmetry for Movement Data
Query 'Team Cymru' 'IP' Address, Autonomous System Number
('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware'
Hash Data Services
Cycle and Phase Identification for mastication data
Agent-Based Model for Taenia_solium Transmission and Control
Bridging and Extending the CytobankAPI Package in R to the
Cytobank Web Application
Plot Fan Plots for Cytometry Data using 'ggplot2'
Automated Cytometry Gating and Annotation
Use Open Data from the Czech Statistical Office in R
Tools for creating D3 JavaScript network, tree, dendrogram, and
Sankey graphs from R
Interactive Charts of Nested and Hierarchical Data with 'D3.js'
Fast and Beautiful Interactive Visualization for 'Markdown' and
'Shiny'
Create Interactive Collapsible Trees with the JavaScript 'D3'
Library
Interface to 'D4Science' 'StorageHub' API
Discriminant Analysis for Evolutionary Inference
Data Analysis and Graphics Data and Functions
Data Sets and Functions, for Demonstrations with Expression
Arrays and Gene Sequences
Damped Anderson Acceleration with Epsilon Monotonicity for
Accelerating EM-Like Monotone Algorithms
Data Analysis using Bootstrap-Coupled Estimation
Data Analysis with Ceiling and/or Floor Data
Three-Way / Multigroup Data Analysis Through Densities
Functions Useful in the Design and ANOVA of Experiments
Design and Analysis of Experiments with R
Spatial Vector Data for Danmarks Administrative Geografiske
Inddeling DAGI
Graphical Analysis of Structural Causal Models
DAGs with Omitted Objects Displayed (DAGWOOD)
Interface with Google Cloud Document AI API
Dynamical Assembly of Islands by Speciation, Immigration and
Extinction
moDel Agnostic Language for Exploration and eXplanation
Automating the Fitting of Double Linear Mixed Models in 'JAGS'
and 'nimble'
The DALY Calculator - Graphical User Interface for Probabilistic
DALY Calculation in R
Dynamic Assembly Model of Colonization, Local Extinction and
Speciation
Interface to Drosophila Activity Monitor System Result Files
Dams in the United States from the National Inventory of Dams
(NID)
Dandelion Plot for R-Mode Exploratory Factor Analysis
Design and Analysis of Non-Inferiority Trials
Discriminant Adaptive Nearest Neighbor Classification
'purrr'-Like Apply Functions Over Input Elements
Data Quality Assessment for Process-Oriented Data
Differential Analysis with Random Reference Genes
Estimating Dark Diversity and Site-Specific Species Pools
Importing and Analysing SNP and Silicodart Data Generated by
Genome-Wide Restriction Fragment Analysis
Statistical Tools to Analyze Your Darts Game
An Interface to the Dash Ecosystem for Authoring Reactive Web
Applications
Interactive Data Visualization with D3.js
Customise the Appearance of 'shinydashboard' Applications using
Themes
Core Interactive UI Components for 'Dash'
Interactive React-Based Pivot Tables for Dash
Core Interactive Table Component for 'dash'
Tools for Reading, Processing and Writing 'DSSAT' Files
General Purpose Hierarchical Data Structure
Functional Data Analysis with Linear Differential Equations
Wrapper for 'TCdata360' and 'Govdata360' API
Connecting to Various Database Platforms
JAR Dependencies for the 'DatabaseConnector' Package
Swarm Intelligence for Self-Organized Clustering
Interactive and Reproducible Data Cleaning
Tools for Easily Combining and Cleaning Data Sets
Compare Two Data Frames and Summarise the Difference
An Interactive Editor for Viewing, Entering, Filtering & Editing
Data
Generate Fake Data for Relational Databases
Familiarity with Dataframes Before Data Manipulation
Estimating Finite State Machine Models from Data
Export Data from R so 'DataGraph' can Read it
A Suite of Checks for Identification of Potential Errors in a
Data Frame as Part of the Data Screening Process
A system for mapping foreign objects to R variables and
environments
Create and Append a Data Dictionary for an R Dataset
Modules to Import and Manipulate Data in 'Shiny'
Create, Refine, and Cluster Data Nuggets
Easily Source Publicly Available Data on Derivatives
A Flexible Container to Transport and Manipulate Data and
Associated Resources
Construct Reproducible Analytic Data Sets as R Packages
Efficient and Flexible Data Preprocessing Tools
Data Quality in Epidemiological Research
Reproducible Data Screening Checks and Report of Possible Errors
C3S Quality Control Tools for Historical Climate Data
Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Data Bank for Statistical Analysis and Visualization
Row by Row Data Processing Tool, Using 'DataSailr' Script
Datasets from the Book "An Introduction to Clustering with R"
Create Lightweight Schema.org Descriptions of Data
An Implementation of a SAS-Style Data Step
Provides a Link Between the 'Refinitiv Datastream' System and R
Data Visualisation Using an HTML Page and 'D3.js'
Simplify Access to Data from the Amazon Region
Traduce al Español Varios Conjuntos de Datos de Práctica
Preparation of Object Dating Ranges for Density Plots (Aoristic
Analysis)
Compact Standard for Australian Phone Numbers
Functions for "Data Analysis in Vegetation Ecology"
Discriminant Analysis with Additional Information
Calculating Days' Supply and Daily Dose of Prescriptions
Discrete Bayesian Additive Regression Trees Sampler
Goodness-of-fit and two sample comparison tests using sample
entropy
Detecting Breakpoints and Estimating Segments in Trend
A Double Bootstrap Method for Analyzing Linear Models with
Autoregressive Errors
Read and Write Files to SQLite Databases
Generalised Linear Models by Subsampling and One-Step Polishing
methods of distance-based gene set functional enrichment
analysis
'DBHYDRO' Hydrologic and Water Quality Data
Compute the NPMLE of distribution from doubly censored data
Deterministic Blockmodeling of Signed, One-Mode and Two-Mode
Networks
Confidence Interval for Matrix Completion via De-Biased
Estimator
Distance-Based Measures of Spatial Structures
Dynamic Bayesian Network Structure Learning, Parameter Learning
and Forecasting
Dynamic Bayesian Network Learning and Inference
Simplifies Plotting Data Inside Databases
Density Based Clustering of Applications with Noise (DBSCAN) and
Related Algorithms
Produce R Functions to Create HTML Forms Based on SQL Meta Data
Inferring Condition-Specific Networks via Differential Network
Inference
Dynamic Correlation Analysis for High Dimensional Data
Detrended Fluctuation and Detrended Cross-Correlation Analysis
Analyzing Dichotomous Choice Contingent Valuation Data
DCC Models with GARCH-MIDAS Specifications in the Univariate
Step
Metadata Validation for Data Coordinating Centers
Differential Community Detection in Paired Biological Networks
Clustering Big Data using Expectation Maximization Star (EM*)
Algorithm
Create, Survey and Analyse Discrete Choice Experiments
Data Cloud Geometry (DCG): Using Random Walks to Find Community
Structure in Social Network Analysis
Differential Co-expression Analysis and Differential Regulation
Analysis of Gene Expression Microarray Data
Analysis of Ontologies and Protein Domain Annotations
Claims Reserving under the Double Chain Ladder Model
Distance Based Cell Lineage Reconstruction
Data Cloning and MCMC Tools for Maximum Likelihood Methods
Functions for the Detection of Spatial Clusters of Diseases
Model-Based Detection of Disease Clusters
Information Matrix for Diagnostic Classification Models
Hierarchical Models Made Easy with Data Cloning
Modify Data Using Externally Defined Modification Rules
List Linear n-Peptide Constraints for Overlapping Protein
Regions
Providing Fast and Flexible Functions for Distance Correlation
Analysis
A Fast Implementation of Distance Covariance
Distance Covariance and Correlation for Time Series Analysis
Nonparametric Regression and Bandwidth Selection for Spatial
Models
Decision Curve Analysis for Model Evaluation
Conventional Cross-validation statistics for climate-growth
model
Depth-Based Classification and Calculation of Data Depth
Variance Stabilization by Data-Driven Haar-Fisz (for
Microarrays)
The Data Defect Index for Samples that May not be IID
Distance & Density-Based Outlier Detection
Diagonally Dominant Principal Component Analysis
Analysis and Visualization of Droplet Digital PCR in R and on
the Web
Disease-Drived Differential Proteins Co-Expression Network
Analysis
Learning Bayesian Networks with Mixed Variables
Deconvolution density estimation with adaptive methods for a
variable prone to measurement error
Conventional and Fuzzy Data Envelopment Analysis
A Post-Clustering Denoiser for COI-5P Barcode Data
Bayesian Inference for Differential Equations
Debug Tool to Watch Objects/Expressions While Running an R
Script
Detecting Changes in Autocorrelated and Fluctuating Signals
DEComposition of Indirect and Direct Effects
Bindings for 'Mapbox' Ear Cutting Triangulation Library
Quantitative Support of Decision Making under Uncertainty
Differential Co-Expression and Differential Expression Analysis
Decode Coded Variables to Plain Text and the Other Way Around
Time Series Prediction with PSF and Decomposition Methods (EMD
and EEMD)
Empirical Mode Decomposition for Cyclostratigraphy
Deconvolution Estimation in Measurement Error Models
Identifies Signatures Present in a Tumor Sample
Extend the Behaviour of a Function without Explicitly Modifying
it
Deductive Correction, Deductive Imputation, and Deterministic
Correction
Data Correction and Imputation Using Deductive Methods
Visualise and Explore the Deep Dependencies of R Packages
Sequential Design for Deep Gaussian Processes using MCMC
Interface to the 'DeepL' Translation API
Clustering of Short Texts by Mixture of Unigrams and Its Deep
Extensions
Dirichlet-multinomial Evolutionary Event Profile Randomization
(DEEPR) test
Plotting Tools for Anyone Working in Deep Time
Density Estimation by Extreme Value Distributions
Change the Default Arguments in R Functions
Create FDA-Style Data and Program Definitions
Integration of One-Dimensional Functions with Double Exponential
Formulas
Parameter Inference for Systems of Differential Equation
Models for Skewed Count Distributions Relevant to Networks
Density Estimation from GROuped Summary Statistics
Multiple Imputation for Recurrent Events
Statistical Functions for the Delaporte Distribution
A Framework for Parallelizing Dependent Tasks
Sample Size and Power Calculations using the APPLE and SEPPLE
Methods
Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
Estimates Pseudotimes for Single Cell Expression Data
Estimation of Multivariate Densities Using Adaptive Partitions
Identification of Dichotomous Differential Item Functioning
(DIF) using Angoff's Delta Plot Method
Kernel Density Estimation using Lifetime Distributions
Decision Making Trial and Evaluation Laboratory Technique in R
Functions to Calculate Relatedness on Diploid Genetic Data
Deming, Theil-Sen, Passing-Bablock and Total Least Squares
Regression
Analysis of Age-Structured Demographic Models
Extrapolate Gender, Age and Nationality of a Name
Providing Demographic Table with the P-Value, Standardized Mean
Difference Value
Forecasting Mortality, Fertility, Migration and Population Data
Kernel Density Estimation for Demonstration Purposes
Runs a 'Shiny' App as Demo or Lists All Demo 'Shiny' Apps
DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using
Test Set
Optimal Design Emulators via Point Processes
Extending 'dendrogram' Functionality in R
A Tool for Processing and Analyzing Dendrometer Data
Extra Functions to Cut, Label and Colour Dendrogram Clusters
A Set of Tools for Calculating Spatial Synchrony Between
Tree-Ring Chronologies
Linear and Nonlinear Methods for Analyzing Daily and Monthly
Dendroclimatological Data
Dendrogram seriation: ordering for visualisation
Modular Leaf Ordering Methods for Dendrogram Nodes
Differential Expression Analysis Using a Bottom-Up Model
Statistical Analyses of De Novo Genetic Variants
Visualization of Multivariate Functions, Sets, and Data
Functional Linear Mixed Models for Densely Sampled Data
Density Estimation via Bayesian Inference Engines
Analysing Density Profiles from Resistance Drilling of Trees
Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for
density estimation
Clustering by Fast Search and Find of Density Peaks
Dens-Based Method for Partial Correlation Estimation in Large
Scale Brain Networks
Density Strips and Other Methods for Compactly Illustrating
Distributions
Simple Dengue Test and Vaccinate Cost Thresholds
Global Optimization by Differential Evolution
Differential Evolution Optimization in Pure R
Statistical Methods for the Analysis of Dependently Truncated
Data
A Utility Package to Help you Deal with "Pignas"
Dependent Mixture Models - Hidden Markov Models of GLMs and
Other Distributions in S4
Read, Plot and Analyse Output from the DEPONS Model
Nonparametric Depth Functions for Multivariate Analysis
Statistical Depth Functions for Multivariate Analysis
Functions and R Code to Accompany Derivatives Markets
Seasonal Adjustment by Frequency Analysis
An Interface to the 'DescribeDisplay' 'GGobi' Plugin
Describe Data in R Using Common Descriptive Statistics
Publication Quality Descriptive Statistics Tables
Produce Descriptive and Comparative Tables Easily
Interactive Functions to be Used as Shortcuts in 'RStudio'
Optimal deseasonalization for geophysical time series using AR
fitting
Design Clinical Trials with Potential Biomarker Effect
Computational tool for designing genetical genomics experiments
Matched Samples that are Balanced and Representative by Design
Sample Size Calculation of Various Study Designs
Desirability Functions for Ranking, Selecting, and Integrating
Data
Function Optimization and Ranking via Desirability Functions
Bagging with Distance-based Regression for Differential Gene
Expression Analyses
Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Plotting Field Plans for Agricultural Experiments
Representation of DET Curve with Confidence Intervals
Create Details HTML Tag for Markdown and Package Documentation
Analyzing Wildlife Data with Detection Error
Detect Data Containing Personally Identifiable Information
Detect Runs of Homozygosity and Runs of Heterozygosity in
Diploid Genomes
Detect and Check for Separation and Infinite Maximum Likelihood
Estimates
Life Insurance Premium and Reserves Valuation
Implementation of the DetMCD Algorithm (Robust and Deterministic
Estimation of Location and Scatter)
Density Estimation and Random Number Generation with
Distribution Element Trees
Suite of Deterministic and Robust Algorithms for Linear
Regression
Start the detrendeR Graphical User Interface (GUI)
A Computer Program to Detect Markers Responding to Selection
Clear and Condense Argument Check for User-Defined Functions
Data sets from Devore's "Prob and Stat for Eng (7th ed)"
Quantify the Relationship Between Development Rate and
Temperature in Ectotherms
Tools to Make Developing R Packages Easier
Develop Treatment Rules with Observational Data
CML and Bayesian Calibration of Multistage Tests
Linear Discriminant Function and Canonical Correlation Analysis
Degrees of Freedom Adjustment for Robust Standard Errors
Phase I/II Adaptive Dose-Finding Design for Combination Studies
Compare Two Dataframes and Return Adds, Changes, and Deletes
Dose-Finding by the Continual Reassessment Method
Explore data.frames by plotting NA and classes of each variable
Differential Functioning of Items and Tests
Meta-Analysis of Phase I Dose-Finding Early Clinical Trials
Phase I/II Adaptive Dose-Finding Design for MTA
Detection and Analysis of Insect Defoliation Signals in Tree
Rings
Extrapolation and Bridging of Adult Information in Early Phase
Dose-Finding Paediatrics Studies
Phase I Control Charts (with Emphasis on Distribution-Free
Methods)
Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for
Phase I Clinical Trials
Diewert and Fox's Method of Value Added Growth Decomposition
Capture-Recapture Estimation using Bayesian Model Averaging
Genetic Algorithm with Incomplete Dominance for Feature
Selection
Differential Gene Expression (DGE) Analysis Results Data Object
Differential Gene Expression (DGE) Analysis Utility Toolkit
Differential Geometric Least Angle Regression
Double Generalized Linear Models Extending Poisson Regression
The Gumbel Distribution Functions and Gradients
Residual Diagnostics for Hierarchical (Multi-Level / Mixed)
Regression Models
Double Hierarchical Generalized Linear Models
Independence Testing via Hilbert Schmidt Independence Criterion
Diagnostic Plot and Multivariate Summary Statistics of Weighted
Samples from Importance Sampling
Meta-Analysis of Diagnostic Accuracy Studies with Several
Cutpoints
Block Diagonal Extraction or Replacement
Functions for Visualising Simple Graphs (Networks), Plotting
Flow Diagrams
Export DiagrammeR Graphviz Graphs as SVG
Parse, Format, and Validate International Phone Numbers
Required 'libphonenumber' jars for the 'dialr' Package
Tools for Creating Tuning Parameter Values
Calculate Ecological Information and Diatom Based Indices
Calculate probabilities of various dice-rolling events
Construction and Evaluation of Metamodels
Kriging Methods for Computer Experiments
Kriging-Based Optimization for Computer Experiments
Methods for Visualization of Computer Experiments Design and
Surrogate
Dictionaries for reading microdata surveys from IBGE
Finding Patterns of Monotonicity and Convexity in Data
R6 Based Key-Value Dictionary Implementation
Treatment Effects with Multiple Periods and Groups
Two-Stage Difference-in-Differences Following Gardner (2021)
A Simple Implementation and Demonstration of Gradient Boosting
Imputation Estimator from Borusyak, Jaravel, and Spiess (2021)
Estimation in DID with Multiple Groups and Periods
Compute Recency Frequency Monetary Scores for your Customer Data
Defines some physical constants and dielectric functions
commonly used in optics, plasmonics
R Interface to the ZEIT ONLINE Content API
Detection of Differential Item Functioning (DIF) in Rasch Models
by Boosting Techniques
Fisher's z-Tests Concerning Difference of Correlations
Analyzing and Visualizing Differential Correlation Networks in
Biological Data
Calculates Confidence Intervals for two Dependent Proportions
Fast and Scalable Learning of Sparse Changes in High-Dimensional
Gaussian Graphical Model Structure
Given a List of Gene Symbols, Performs Differential Enrichment
Analysis
Solving Differential Equations (ODEs, SDEs, DDEs, DAEs)
Metrics of Difference for Comparing Pairs of Maps or Pairs of
Variables
Diffusion IRT Models for Response and Response Time Data
Multi-Fidelity Computer Experiments Using the Tuo-Wu-Yu Model
Detection of Statistically Significant Changes in Complex
Biological Networks
Display Differences Between Two Files using Codediff Library
Inference and Analysis for Generalized Quadratic Diffusions
Inference and Analysis for Diffusion Processes via Data
Imputation and Method of Lines
Inference and Analysis for Jump Generalized Quadratic Diffusions
Pattern Analysis Across Contingency Tables
A Penalty Approach to Differential Item Functioning in Rasch
Models
DIF and DDF Detection by Non-Linear Regression Models
Multilevel Mantel-Haenszel Statistics for Differential Item
Functioning Detection
Collection of Methods to Detect Dichotomous Differential Item
Functioning (DIF)
Differential Item Functioning via Shiny Application
Item Focussed Trees for the Identification of Items in
Differential Item Functioning
Create Compact Hash Digests of R Objects
Deconvolution of Bulk RNA-Seq Data Based on Deep Learning
Tests for Detecting Irregular Digit Patterns
Determination of Intervals Using Georeferenced Survey Simulation
Data-Informed Link Strength. Combine multiple-relationship
networks into a single weighted network. Impute (fill-in)
missing network links
DIME (Differential Identification using Mixture Ensemble)
Gathering Bibliographic Records from 'Digital Science
Dimensions' Using 'DSL' API
A Framework for Dimensionality Reduction
DiNAMIC A Method To Analyze Recurrent DNA Copy Number
Aberrations in Tumors
Finding Recurrent DNA Copy Number Alterations and Differences
A Toolkit for Year-Quarter, Year-Month and Year-Isoweek Dates
Differential Pattern Analysis via Linear Modeling
Robust Tests for Differential Dispersion and Differential
Expression in RNA-Sequencing Data
Depth Importance in Precision Medicine (DIPM) Method
Conduct Direction-Projection-Permutation Tests and Display Plots
Directional Penalties for Optimal Matching in Observational
Studies
A Dipping Sauce for Data Analysis and Visualizations
Hartigan's Dip Test Statistic for Unimodality - Corrected
Debiased Inverse Propensity Score Weighting
Linear Regressions with a Latent Outcome Variable
Bayesian Clustering of Multivariate Data Under the
Dirichlet-Process Prior
Estimating Controlled Direct Effects for Explaining Causal
Findings
A Collection of Functions for Directional Data Analysis
Creates an Interactive Tree Structure of a Directory
Direction Analysis for Pathways and Kinases
Adjusted Means and Proportions by Direct Standardisation
Build Dirichlet Process Objects for Bayesian Modelling
Nonparametric Methods for Directional Data
Two-Steps Benchmarks for Time Series Disaggregation
Wrapper for the UN OCHA ReliefWeb Disaster Events API
Linear and Non-Linear AUC for Discounting Data
A User-Friendly Pipeline for Biomarker Discovery in Single-Cell
Transcriptomics
Cox Models for Time-to-Event Data with Nonparametric Discrete
Group-Specific Frailties
Discrete Laplace Mixture Inference using the EM Algorithm
Test for Discretized Normality in Ordinal Data
Discordance and Concordance of Transcriptomic Responses
Functions for Discordant Kinship Modeling
Analyze Group Patterns using Graph Theory in Educational
Settings
Checks Title, Abstract and Keywords to Optimise Discoverability
Coordinate-Descent Algorithm for Learning Sparse Discrete
Bayesian Networks
Multiple Testing Procedures with Adaptation for Discrete Tests
Simulated Goodness-of-Fit Tests for Discrete Distributions
Multiple testing procedures for discrete test statistics
Improved q-Values for Discrete Uniform and Homogeneous Tests
Create and Manipulate Discrete Random Variables
Discrete Weibull Distributions (Type 1 and 3)
Data preprocessing, discretization for classification
Model Wrappers for Discriminant Analysis
Tools of the Trade for Discriminant Analysis
Data for Comparing Species Distribution Modeling Methods
Modelling Spatial Variation in Disease Risk for Areal Data
Estimation Methods for Markets in Equilibrium and Disequilibrium
Estimate the Gene Expression Levels and Component Proportions of
the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor
Samples
Calculate Dissimilarity Matrix for Dataset with Mixed Attributes
Calculates Disproportionate Impact When Binary Success Data are
Disaggregated by Subgroups
Larger-than-RAM Disk-Based Data Manipulation Framework
A Pipeline to Analyze Resistance and Tolerance from Drug Disk
Diffusion Assays
Disparity Filter Algorithm for Weighted Networks
Create Disposable R Packages for Testing
Analysis of Disposition Effect on Financial Portfolios
Multiple Assemblage Dissimilarity for Orders q = 0-N
Spatial Downscaling using the Dissever Algorithm
Fitting Sample Selection Models for Discrete Response Variables
Utilities for making pairwise comparisons of multivariate data
Distance Sampling Detection Function and Abundance Estimation
Calculates Study Size Required for Distance Sampling
Assessing Dissimilarity Between Multivariate Time Series
DiSTATIS Three Way Metric Multidimensional Scaling
Computations over Distributed Data without Aggregation
Distributional Method for the Dichotomisation of Continuous
Outcomes
'R Markdown' Format for Scientific and Technical Writing
Method Functions for Confidence Intervals and to Distill
Information from an Object
Unified Interface to Distance, Dissimilarity, Similarity
Matrices
Object Oriented Implementation of Distributions
The Complete R6 Probability Distributions Interface
Documentation for 'distr' Family of R Packages
Framework for the Visualization of Distributional Regression
Models
S4 Classes for Elliptically Contoured Distributions
Four Essential Functions for Statistical Distributions Analysis:
A New Functional Approach
Powerful Goodness-of-Fit Tests Based on the Likelihood Ratio
Object Oriented Implementation of Probability Models
Estimate and Manage Empirical Distributions
Distribution Classes for Distributions from Rmetrics
Simulation Classes Based on Package 'distr'
Extensions of Package 'distr' for Teaching
Stochastics/Statistics in Secondary School
Estimation and Testing Classes Based on Package 'distr'
A Collection of Full Defined Distribution Tails
A Test Environment for Database Requests
Report on Diversity and Inclusion in a Corporate Setting
Diversity Dynamics using Fossil Sampling Data
Easily Install and Load Interactive Data Visualization Tools
Evolutionary Trait Divergence Between Sister Species and Other
Paired Lineages
Econometric Tools to Measure Portfolio Diversification
Comparative 'Phylogenetic' Analyses of Diversification
A Comprehensive, General Purpose Population Genetics Analysis
Package
Complex Split Procedures in Random Forests Through Candidate
Split Sampling
Building Diversity Models from Multiple Species Occupancy Models
Tools for Analysis of Diversity and Similarity in Biological
Systems
Calculate Diversity and Segregation Indices
Nearest Neighbour Contingency Table Analysis
Dixon's Ratio Test for Outlier Detection
Record Linkage and Epidemiological Case Definitions in R
Utilities for 'DIZ' R Package Development
Distance Measure Based Judgment and Learning
Time Series Regression Models with Distributed Lag Models
Implementation of Adaptive or Non-Adaptive Differentiable Lasso
and SCAD Penalties in Linear Models
Use Dirichlet Laplace Prior to Solve Linear Regression Problem
and Do Variable Selection
Bayesian and Likelihood Analysis of Dynamic Linear Models
Tools for Data Diagnosis, Exploration, Transformation
Distributed-Lag Linear Structural Equation Models
Measurement Nonequivalence Effect Size Calculator
Model Based Clustering of Binary Dissimilarity Measurements
Diffusion Model of Conflict (DMC) in Reaction Time Tasks
Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model
Dynamic Modeling and Parameter Estimation in ODE Models
DiST - Diffusion Direction Smoothing and Tracking
DMR Detection by Non-Homogeneous Hidden Markov Model from
Methylation Array Data
Delete or Merge Regressors Algorithms for Linear and Logistic
Model Selection and High-Dimensional Data
Tools for Applying Distribution Mapping Based Transfer Learning
Functions and Data for the Second Edition of "Data Mining with
R"
Differential Network Analysis using Gene Pathways
Tools for Analysing Forensic Genetic DNA Data
Integrative Analysis of Omics Data in Terms of Network,
Evolution and Ontology
Differential Network Local Consistency Analysis
Simulate Dynamic Networks using Exponential Random Graph Models
(ERGM) Family
Analysis of Discretely Observed Linear
Birth-and-Death(-and-Immigration) Markov Chains
Dimension Reduction for Outlier Detection
Data from the GLM Book by Dobson and Barnett
Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
Measuring Concreteness in Natural Language
Distributed Representations of Sentences, Documents and Topics
Using the Docker Container to Create R Workers on Local or Cloud
Platform
Use Docker Images to Process Rmarkdown Blocks
Provides Docstring Capabilities to R Functions
Run 'roxygen2' on (Chunks of) Single Code Files
Extract Data Tables and Comments from 'Microsoft' 'Word'
Documents
Acceptance Sampling Ideas Originated by H.F. Dodge
Full Factorials, Orthogonal Arrays and Base Utilities for DoE
Packages
Creation of Arrays by Mixed Integer Programming
Wrapper Package for Design of Experiments Functionality
Analysis of Design of Experiments for Biological Research
Rare Variant Association Test Based on Position Density
Estimation
A Universal Foreach Parallel Adapter using the Future API of the
'future' Package
Calculate and Visualize Dominance Hierarchies
R Console Bindings for the 'Domino Command-Line Client'
Tools to Support Relative Importance Analysis
Do Multiple Imputation-Based Semi-Supervised and Unsupervised
Learning
Foreach Parallel Adaptor for the Rmpi Package
Nearest Neighbour Search with Variables on a Torus
Exploration of Dental Surface Topography
Foreach Parallel Adaptor for the 'parallel' Package
'Foreach' Parallel Adapter Using the 'Redis' Database
Dynamics of Return to Equilibrium During Multiple Inputs
Generic Reproducible Parallel Backend for 'foreach' Loops
Design of Observational Studies, Companion to the Second Edition
Causal Effect Identification from Multiple Incomplete Data
Sources
Interactive Designing of Dose Finding Studies
Planning and Analyzing Dose Finding Experiments
Extract Drug Dosages from Free-Text Prescriptions
Foreach Parallel Adaptor for the 'snow' Package
Enhanced Foreign Function Interface Supporting Long Vectors
Enhanced Assignment Operator to Overwrite or Grow Objects
Gene-Set Analysis via Decorrelation by Orthogonal Transformation
Create and Manage Configuration Profiles
Dot-and-Whisker Plots of Regression Results
Survivor Function Estimation for Doubly Interval-Censored
Failure Time Data
Test Against Parametric Regression Function
Differential Exon Usage Test for RNA-Seq Data via Empirical
Bayes Shrinkage of the Dispersion Parameter
Enable Operators Containing the '?' Symbol
Kernel Hazard Estimation with Best One-Sided and Double
One-Sided Cross-Validation
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's
Book Measuring Market Risk
Syntax Highlighting and Automatic Linking
Implement Download Buttons in 'rmarkdown'
Downscale of RS Images using Deep Learning
A Tool to Downsize Large Workflows for Testing
Dynamic Programming for Convex Clustering
Automated Analysis of Multiplex Digital PCR Data
RStudio Addin for Teaching and Learning Data Manipulation Using
'dplyr'
Inference of Parameters of Normal Distributions from a Mixture
of Normals
Determinantal Point Process Mixture Models
Density, Probability, Quantile ('DPQ') Computations
DPQ (Density, Probability, Quantile) Distribution Computations
using MPFR
Piecewise Linear Segmentation by Dynamic Programming
Dirichlet Process Weibull Mixture Model for Survival Data
Methods for Dimension Reduction for Regression
Joint Dimension Reduction and Spatial Clustering
Dose Response Data Analysis using the 4 Parameter Logistic (4pl)
Model
Deep Time Redox Analysis of the Geobiology Ontology Network
Statistical Tools to Identify Dragon Kings
Drag and Drop Elements in 'Shiny' using 'Dragula Javascript
Library'
A Pipeline Toolkit for Reproducible Computation at Scale
Wrapper Functions for Producing Graphics
Draw Samples with the Desired Properties from a Data Set
Computation of Rayleigh Densities of Arbitrary Dimension
Data Representation: Bayesian Approach That's Sparse
A Nonparametric Doubly Robust Test for Continuous Treatment
Effect
Dose Response Models for Bayesian Model Averaging
Regularized Estimation of Dynamic Linear Regression in the
Presence of Autocorrelated Residuals (DREGAR)
Doubly Robust Generalized Estimating Equations
Differential Risk Hotspots in a Linear Network
Calculates the Test-Statistic for the Drift Burst Hypothesis
Concept Drift and Concept Shift Detection for Predictive Models
Estimation, Simulation and Reliability of Drifting Markov Models
Imputing Dropout Events in Single-Cell RNA-Sequencing Data
Drug Repurposing: Integration and Systematic Investigation of
Genomic High Throughput Data
Discontinuous Regression and Image Processing
Prioritizing Cancer Driver Genes Using Genomics Data
Dual Empirical Likelihood Inference under Density Ratio Models
in the Presence of Multiple Samples
Analyze Drop Out of an Experiment or Survey
Doubly-Robust Estimators for Ordinal Outcomes
Statistical Modeling and Assessment of Drought
Efficient and Doubly Robust Population Size Estimation
Doubly-Robust Nonparametric Estimation and Inference
Implementation of a Machine Learning Framework for Predicting
Drugs Side Effects
Prepare Electronic Prescription Record Data to Estimate Drug
Exposure
Drug Repurposing in Cancer via a Subpathway Crosstalk Network
Seasonal Adjustment of Daily Time Series
Dynamical Systems Approach to Infectious Disease Epidemiology
(Ecology/Evolution)
Dynamical Systems Approach to Immune Response Modeling
Discretization-Based Direct Random Sample Generation
Normalize & Denoise Droplet Single Cell Protein Data (CITE-Seq)
Bayesian subgroup analysis in clinical trials
Dynamic Systems Estimation (Time Series Package)
What Skills and Qualifications are Required for Data Science
Related Jobs?
'DataSHIELD' Implementation on Local Datasets
Density Surface Modelling of Distance Sampling Data
Data Science Box of Pandora Miscellaneous
'DataSHIELD' Client for 'MOLGENIS Armadillo'
Tests and Confidence Intervals on Directly Standardized Rates
for Several Methods
A Comprehensive R Interface for the DSSAT Cropping Systems Model
Analyze Two Choice Reaction Time Data with the D*M Method
Conditional Sensitivity Analysis for Matched Observational
Studies
Recursive Partitioning for Discrete-Time Survival Trees
Exploring Disease Similarity in Terms of Dysfunctional
Regulatory Mechanisms
A Wrapper of the JavaScript Library 'DataTables'
Cell Type Deconvolution from Gene Expressions
Creates Plots Accompanying Bayesian Diagnostic Test Accuracy
Meta-Analyses
Diagnostic Test Assessment in the Absence of Gold Standard
Comparison of Binary Diagnostic Tests in a Paired Study Design
Doubly Truncated Data Analysis, Cumulative Incidence Functions
Doubly Truncated Data Analysis, Non Iterative
Analysis of Diffusion Weighted Imaging (DWI) Data
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted
for Unequal Variances and Unequal Sample Sizes
Suite of functions related to discrete-time discrete-state
Markov Chains
Dose Transition Pathways for Continual Reassessment Method
Estimation and Comparison of Dynamic Treatment Regimes
Statistical Learning Methods for Optimizing Dynamic Treatment
Regimes
DTR Estimation and Inference via G-Estimation, Dynamic WOLS,
Q-Learning, and Dynamic Weighted Survival Modeling (DWSurv)
Dynamic Treatment Regimes for Survival Analysis
A Class for Working with Time Series Data Based on 'data.table'
and 'R6' with Largely Optional Reference Semantics
Manipulate Date, POSIXct and hms Vectors
Imputation of Time Series Based on Dynamic Time Warping
Time Series Clustering Along with Optimizations for the Dynamic
Time Warping Distance
Simplified Data Analysis with Wrapper Functions for the
'Data.Table' Package
Time-Weighted Dynamic Time Warping for Satellite Image Time
Series Analysis
Imputation of Multivariate Time Series Based on Dynamic Time
Warping
Automatic Differentiation with Dual Numbers
Decimated and Undecimated 2D Complex Dual-Tree Wavelet Transform
Securely Wrangle Dataset According to Data Usage Agreement
Unpacking Assignment for Lists via Pattern Matching
Correlation-Based Feature Selection for Single-Cell RNA
Sequencing Data
DBI Package for the DuckDB Database Management System
Simple Client for the DuckDuckGo Instant Answer API
Displaying Changes Between Two Points Using Dumbbell Plots
Create dummy/indicator variables flexibly and efficiently
Automatic Creation of Dummies with Support for Predictive
Modeling
Dunn's Test of Multiple Comparisons Using Rank Sums
Software implementation of step-down and step-up Dunnett test
procedures
Bayesian inference from count data using discrete uniform priors
Mixed Proportional Hazard Competing Risk Model
Analyze Dose-Volume Histograms and Check Constraints
Convenience Functions, Moving Window Statistics, and Graphics
Dynamic VAR - Based Control Charts for Batch Process Monitoring
Dynamic Water Balance a Hydrological Model
Fast Algorithms for Large Scale Generalized Distance Weighted
Discrimination
Read Binary Radar Files from 'DWD' (German Weather Service)
Parametric Regression for Discrete Response
Tools for DYRESM-CAEDYM Model Development: Calibration Assistant
and Post-Processing
Detection of Chaotic and Regular Intervals in the Data
Interface to 'Dygraphs' Interactive Time Series Charting Library
Quadratic Programming using Cyclic Projections
Dynamic Simulation and Testing for Single-Equation ARDL Models
Dynamically visualized probability distributions and their
moments
Modelling and Analysis of Dynamic Computer Experiments
Dynamic Hazard Models using State Space Models
Methods for Detection of Clusters in Hierarchical Clustering
Dendrograms
A Seamless Integration of 'R' and 'Dynare'
Full Interactive GUI for Dynamic Biplot in R
Denoising and clustering for dynamical image sequence (2D or
3D)+T
Dynamic Network Communities Detection and Generation
Complexity of Short and Coarse-Grained Time Series
Dimensionality Reduction Methods in a Common Format
Resisting Neighbor Label Attack in a Dynamic Network
Feature Importance for Dynamic Processes
A Multi-Modal Simulator for Spearheading Single-Cell Omics
Analyses
Visualising Statistical Models using Dynamic Nomograms
Companion Package to "Dynamic Prediction in Clinical Survival
Analysis"
Dynamic Simulations of Autoregressive Relationships
Methods for Estimating Optimal Dynamic Treatment Regimes
Common Functionality for the 'dynverse' Packages
Representing and Inferring Single-Cell Trajectories
Background and Pathway Data Used in 'DysPIA'
Misc Functions of the Department of Statistics, Probability
Theory Group (Formerly: E1071), TU Wien
Management and Processing Tools for Data Produced by the
Empatica E4
Fitting Dose-Response Models Using an Evolutionary Algorithm
Plots of the Empirical Attainment Function
Multiple Locus Association Mapping on a Genome-Wide Scale
Estimator Augmentation and Simulation-Based Inference
Dynamic Web-Based Analytics for the Energy Industry
Properties of Bayesian Early Gating Designs
Estimation of Transmissibility in the Early Stages of a Disease
Outbreak
Early Warning Signals Toolbox for Detecting Critical Transitions
in Timeseries
Parallel Implementation of 'ETERNA 3.40' for Prediction and
Analysis of Earth Tides
Derive a Color Palette from a Particular Location on Earth
Efficient Approximate Bayesian Computation Sampling Schemes
Generate Alluvial Plots with a Single Line of Code
Analysis of Variance and Other Important Complementary Analyses
A Convenient Way of Descriptive Statistics
Easily Performs Differential Coexpression Analysis
Interactive Scatter Plot and Volcano Plot Labels
Easy Model-Builder Functions for 'OpenMx'
Tools to Easily Read/Write NetCDF Files into/from
Multidimensional R Arrays
Sample Size Estimation for Experimental Designs
Reading, Formatting, and Organizing the Panel Study of Income
Dynamics (PSID)
Search and Retrieve Scientific Publication Records from PubMed
Helpful Functions from Oliver Wyman Actuarial Consulting
Easy Interface to the Statistical Disclosure Control Package
'sdcTable' Extended with the 'GaussSuppression' Method
Ensemble Forecast Verification for Large Data Sets
Create Constraints for Small Test Assembly Problems
Spreadsheet Interface for Relational Databases
Data Management of Large Hierarchical Data
Educational Assessment Tools for Replication Methods
Miscellaneous Functions for the Analysis of Educational
Assessments
Entropy reweighting to create balanced samples
Sample Size Calculation Method for Cost-Effectiveness Studies
Based on Expected Value of Perfect Information
Empirical Bayes Thresholding and Related Methods
An Empirical Bayes Method for Chi-Squared Data
Robust Empirical Bayes Confidence Intervals
Empirical Bayes Estimation of Dynamic Bayesian Networks
Genotyping and SNP Detection using Next Generation Sequencing
Data
Empirical Bayesian Lasso and Elastic Net Methods for Generalized
Linear Models
Access and Analyze eBird Status and Trends Data
Estimate Ensemble Bayesian Model Averaging Forecasts using Gibbs
Sampling or EM-Algorithms
Derive Polygenic Risk Score Based on Emprical Bayes Theory
Implementation of the Empirical Bayes Method
"Empirical Bayes Smoothing Splines with Correlated Errors"
Genotyping and SNP calling using single-sample next generation
sequencing data
An Automated Way to Estimate EC50 for Stratified Datasets
Excess Certainty Adjusted Probability Estimate
Programmatic Access to the European Central Bank's Statistical
Data Warehouse
Translate English Words into Chinese, or Translate Chinese Words
into English
Simulation from Endpoint-Conditioned Continuous Time Markov
Chains
Elliptic Lambda Distribution and Option Pricing Model
Functions for Spatial Point Pattern Analysis
A Goodness-of-Fit Test for Elliptical Distributions with
Diagnostic Capabilities
Embedding Interactive Charts Generated with ECharts Library into
Shiny Applications
Create Interactive Graphs with 'Echarts JavaScript' Version 5
Minimal R/Shiny Interface to JavaScript Library 'ECharts'
The Echelon Analysis and the Detection of Spatial Clusters using
Echelon Scan Method
Finding Rhythms Using Extended Circadian Harmonic Oscillators
(ECHO)
Efficient Calculation of Fine Structure Isotope Patterns via
Fourier Transforms of Simplex-Based Elemental Models
Ensemble Correlation-Based Low-Rank Matrix Completion
Environment Based Clustering for Interpretable Predictive Models
in High Dimensional Data
Interface to 'ECMWF' and 'CDS' Data Web Services
Integrating Ecosystem Remote Sensing Products to Derive EBV
Indicators
Tools to Create, Use, and Convert ecocomDP Data
Graphical Modelling and Ordination using Copulas
Estimating a Diet Matrix from Biotracer and Stomach Content Data
Dissimilarity-Based Functions for Ecological Analysis
A Community Modeling Foundation for Eco-Hydrology
Complexity Measures for Supervised Problems
"A practical guide to ecological modelling - using R as a
simulation platform"
Coalescent-Based Simulation of Ecological Communities
General Analysis of Various Economics Demand Systems
Estimation of Parameter-Dependent Network Centrality Measures
Simulate and Sample from Ecological Interaction Networks
Computational Methods for Economic Complexity
Null Model Analysis for Ecological Networks
Power Estimates and Equivalence Testing for Multivariate Data
Ecological Regression using Aggregate and Individual Data
Conducts Analyses Informing Ecosystem Restoration Decisions
Simulating Community Assembly and Ecological Diversification
Using Ecospace Frameworks
Code and Data Accompanying the Eco-Stats Text
Statistical Scaling Functions for Ecological Systems
Characterising and Locating Ecotones and Communities
Download and Extract Data from US EPA's ECOTOX Database
Procedures for Ecological Assessment of Surface Waters
Non-Parametric Multiple Change-Point Analysis of Multivariate
Data
Flexible Co-Data Learning for High-Dimensional Prediction
Quantitative Estimates of Small Ectotherm Temperature Regulation
Effectiveness
Cointegration Based Timedelay Neural Network Model
Equality of 2 (or k) Continuous Univariate and Multivariate
Distributions
Estimate ED50 and Its Confidence Interval
Experimental Design and Analysis for Tree Improvement
Download School District Geospatial Data, Perform Spatial
Analysis, and Create Formatted Exportable Maps
Automated School District Data Download and Processing
Ecological Data Collection and Processing Package
Get Evaporative Demand Drought Index Raster Data
Exploratory and Descriptive Event-Based Data Analysis
Read Data from European Data Format (EDF and EDF+) Files
Goodness of Fit Based on Empirical Distribution Function
Tool for the U.S. SEC EDGAR Retrieval and Parsing of Corporate
Filings
Algorithms for Bundling Edges in Networks and Visualizing Flow
and Metro Maps
Datasets that Support the EDGE Server DIY Logic
More Powerful Unconditional Testing of Negative Binomial Means
for Digital Gene Expression Data
Bayesian Estimation of an Exploratory Deterministic Input, Noisy
and Gate Model
Network Reconstruction and Changepoint Detection
'RStudio' Addin for Editing a 'data.frame'
Parsing, Applying, and Manipulating Data Cleaning Rules
Toolbox for Error-Driven Learning Simulations with Two-Layer
Networks
Dynamic Model Averaging with Grid Search
Euclidean Distance Matrix Completion Tools
Implements the EDNE-Test for Equivalence
Empirical Distribution Ordering Inference Framework (EDOIF)
Provides Tools for Dimension Reduction Methods
Analysis of NCES Education Survey and Assessment Data
Retrieve Records from the Urban Institute's Education Data
Portal API
Compute and Decompose Inequality in Education
Exploring Election and Census Highly Informative Data Nationally
for Australia
Robust Analytical Methods for Evaluating Educational
Interventions using Randomised Controlled Trials Designs
Read and Preprocess Fluorescence Excitation-Emission Matrix
(EEM) Data
Ensemble Empirical Mode Decomposition and Its Variant Based ELM
Model
Ensemble Empirical Mode Decomposition and Its Variant Based
Support Vector Regression Model
EEMD and Its Variant Based Time Delay Neural Network Model
Tools for Pre-Processing Emission-Excitation-Matrix (EEM)
Fluorescence Data
Convenience Functions for Education Data
Simulate and Evaluate Time Series for Environmental Epidemiology
Eigenvectors from Eigenvalues Sparse Principal Component
Analysis (EESPCA)
Modelling Framework for the Estimation of Salmonid Abundance
Exploratory Factor Analysis Functions for Assessing
Dimensionality
Dimensionality Assessment Using Minimum Rank Factor Analysis
Fast and Flexible Implementations of Exploratory Factor Analysis
Tools
Utility Functions for Exploratory Factor Analysis
Implement European Forestry Dynamics Model
Wavelet-Based Enhanced FDR for Detecting Signals from Complete
or Incomplete Spatially Aggregated Data
Efficient Least Squares for Total Causal Effects
Bayesian Effect Fusion for Categorical Predictors
Effect Displays for Linear, Generalized Linear, and Other Models
Indices of Effect Size and Standardized Parameters
Test changes of a grouped response relative to baseline
Visualization of Categorical Response Models
Efficient Initials for Computing the Maximal Eigenpair
The Causal Effects for a Causal Loglinear Model
Efficient Fitting of Linear and Generalized Linear Models
Fetch Data from the Federal Reserve Economic Database
High-Level Functions to Read and Write Ensemble Forecast Time
Series in netCDF
Exploratory Graph Analysis – a Framework for Estimating the
Number of Dimensions in Multivariate Data using Network
Psychometrics
Extensions for 'ggplot2': Custom Geom, Custom Themes, Plot
Alignment, Labelled Panels, Symmetric Scales, and Fixed Panel
Size
Hierarchical Modelling of Faecal Egg Counts
Import and Analyse Ego-Centered Network Data
Exploration and Graphics for RivEr Trends
Exploration and Graphics for RivEr Trends Confidence Intervals
Leveraging eQTLs to Identify Individual-Level Tissue of Interest
for a Complex Trait
Enhanced Help to Enable "Docstring"-Comments in Users Functions
Electronic Health Record (EHR) Data Processing and Analysis Tool
Delineating Temporal Dataset Shifts in Electronic Health Records
Real Datasets for Assessing Ecological Inference Algorithms
API Wrapper for 'US Energy Information Administration' Open Data
R Wrapper for the Energy Information Administration (EIA) API
Compares Ecological Inference, Goodman, Rows by Columns
Estimates
Generates (dense) matrices that have a given set of eigenvalues
Semiparametric Factor and Regression Models for Symmetric
Relational Data
Computes confidence intervals for principal components
Efficiently Impute Large Scale Incomplete Matrix
Effective Information and Causal Emergence
Access to RFR (Risk-Free Rate) Curves Produced by the EIOPA
Ecological Inference and Higher-Dimension Data Management
Explanatory Item Response Modeling for Dichotomous and
Polytomous Items
An Algorithm for Reducing Errors-in-Variable Bias in Simple
Linear Regression
MCMC Procedures for Estimating Enzyme Kinetics Constants
Empirical Likelihood (EL) for Comparing Two Survival Functions
A 'shiny' Application for Exploring Laboratory Data
Elastic Analysis of Sparse, Dense and Irregular Curves
Enhanced Least Absolute Shrinkage and Selection Operator
Regression Model
General Purpose Interface to 'Elasticsearch'
Ising Network Estimation using Elastic Net and k-Fold
Cross-Validation
Elastic-Net for Sparse Estimation and Sparse PCA
Collection of Functions for Statistical Election Audits
Functions for election audits using stratified random samples
Estimation of Life Expectancies Using Multi-State Models
R Functions to Download and Clean Brazilian Electoral Data
Allocating Seats Methods and Party System Scores
An Framework for Reducing Elemental LAICPMS Data from Solid
Structures
Load Associated Press Election Results with Elex
Kumaraswamy Complementary Weibull Geometric (Kw-CWG) Probability
Distribution
Sampling from a Empirical Likelihood Bayesian Posterior of
Parameters Using Hamiltonian Monte Carlo
ELISA Data Analysis with Batch Correction
Equipment for Logarithmic and Linear Time Stepwise Multiple
Hypothesis Testing
Functions for Drawing Ellipses and Ellipse-Like Confidence
Regions
Weierstrass and Jacobi Elliptic Functions
Implementation of the Efficient Large-Scale Online Display
Advertising Algorithm
Preference Rating for Visual Stimuli Based on Elo Ratings
Optimized Elo Rating Method for Obtaining Dominance Ranks
Animal Dominance Hierarchies by Elo Rating
Entropy-Based Local Indicator of Spatial Association
Utilise Catastrophe Model Event Loss Table Outputs
Empirical Likelihood Analysis for the Cox Model and
Yang-Prentice (2005) Model
EM Algorithm for Maximum Likelihood Estimation by Non-Precise
Information
Data Management Tools for Real-Time Monitoring/Ecological
Momentary Assessment Data
Ensemble Boolean Model Biomarker Analysis
Fast Embedding Guided by Self-Organizing Map
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Evolutionary Monte Carlo (EMC) algorithm
EM Algorithm for Model-Based Clustering of Finite Mixture
Gaussian Distribution
Empirical Mode Decomposition and Hilbert Spectral Analysis
Support Functions and Data for "Ecological Models and Data"
Estimating and Mapping Disaggregated Indicators
Exponentially Modified Gaussian (EMG) Distribution
EM Algorithms for Estimating Item Response Theory Models
Tools for Create Emissions for Air Quality Models
Emissions and Statistics in R for Wastewater and Pollutants in
Combined Sewer Systems
Read and Write Ecological Metadata Language Files
Fitting log-Linear Models in Sparse Contingency Tables
Estimated Marginal Means, aka Least-Squares Means
A Mixture Model-Based Approach to the Clustering of Microarray
Expression Data
Mixture Models with Component-Wise Factor Analyzers
A Maximum Likelihood Approach to the Analysis of Modularity
Fitting Mixed Models with Known Covariance Structures
Tools for Environmental and Ecological Survey Design
Eye Movement Analysis Package for Fixation and Saccade Detection
Expected Maximum Profit Classification Performance Measure
Conducting the Peak Fitting Based on the EM Algorithm
Evaluates the Empirical Characteristic Function for Multivariate
Samples
Routines for Performing Empirical Calibration of Observational
Study Estimates
Simulation-Based False Discovery Rate in RNA-Seq
Empirical Likelihood Ratio for Censored/Truncated Data
Empirical Likelihood Ratio Test for Two Samples with Censored
Data
Epimed Solutions Collection for Data Editing, Analysis, and
Benchmark of Health Units
Some EM-Type Estimation Methods for the Heckman Selection Model
Exact Multinomial Test: Goodness-of-Fit Test for Discrete
Multivariate Data
Main Package of the EMU Speech Database Management System
The Expectation-Maximization Approach to Bayesian Variable
Selection
Portable Tools for 'UTF-8' Character Data
Encoding of Nucleotide Sequences into Numeric Feature Vectors
Ensemble Methods for Multiple Change-Point Detection
Represent Ordered Lists and Pairs as Strings
Easily Encrypt and Decrypt Data Frame/Tibble Columns or Files
using RSA Public/Private Keys
Bayesian Measurement Models for Analyzing Endorsement
Experiments
Transmissions and Receptions in an End to End Network
E-Statistics: Multivariate Inference via the Energy of Data
Distribution Free Multivariate Control Chart Based on Energy
Test
Data Published by the United States Federal Energy Regulatory
Commission
Robust and Sparse Methods for High Dimensional Linear and
Logistic Regression
Data sets from "Introductory Statistics for Engineering
Experimentation"
English and European Soccer Results 1871-2016
Automated Tuning and Evaluations of Ecological Niche Models
Analysis of Niche Evolution using Niche and Distribution Models
Ensemble Partial Least Squares Regression
Methods to Enrich R Objects with Extra Components
Extensible Package for Parallel, Batch Training of Base Learners
for Ensemble Modeling
Probabilistic Forecasting using Ensembles and Bayesian Model
Averaging
Extensible Package for Cross-Validation-Based Integration of
Base Learners
Extensible Package for Principal-Component-Regression-Based
Heterogeneous Ensemble Meta-Learning
Extensible Classes and Methods for Penalized-Regression-Based
Integration of Base Learners
Ensemble Taxonomic Assignments of Amplicon Sequencing Data
Translate English Words into Chinese Words
Entropy Partitioning to Measure Diversity
Estimation of Entropy, Mutual Information and Related Quantities
Estimation of Entropy and Related Quantities
Tools for Exploring Differential Shannon Entropy, Differential
Coefficient of Variation and Differential Expression
MCMC Simulation and Convergence Evaluation using Entropy and
Kullback-Leibler Divergence Estimation
Miscellaneous Functions for Environmental Analyses
Detection of Structural Changes in Climate and Environment Time
Series
Various Utilities for Microbial Genomics and Metagenomics
Environmental Exposure on the Individual Level
Environmental Interpolation using Spatial Kernel Density
Estimation
GC/LC-MS Data Analysis for Environmental Science
Isotope Pattern, Profile and Centroid Calculation for Mass
Spectrometry
Peak Picking for High Resolution Mass Spectrometry Data
Environmental Probabilistic Risk Assessment Tools
Statistical Analysis of Environmental Space-Time Processes
Keep Track of User-Defined Environment Names
Whole Genome Phylogenies Using Sequence Environments
Methods for Identification of Outliers in Environmental Data
Package for Environmental Statistics, Including US EPA Guidance
Export or Graph and Tables to 'Microsoft' Office and Import
Figures and Tables
Data Management Package (Exposure and Occurrence Data in R)
Statistical Functions for the Censored and Uncensored
Epanechnikov Distribution
Call 'EPANET' Functions to Simulate Pipe Networks
Simulating Populations of Ectotherms under Global Warming
Ensemble Penalized Cox Regression for Survival Prediction
Implementation of the Everglades Phosphorus Gradient Model
Argentina's Permanent Household Survey Data and Manipulation
Utilities
Elementary Epidemiological Functions for Epidemiology and
Biostatistics
Handling, Visualisation and Analysis of Epidemiological Contacts
Epidemiological Tool for Contact Tracing
Tools to Retrieve Economic Policy Institute Data Library
Extracts
Modeling of Epidemics using Hierarchical Bayesian Models
Estimate Time Varying Reproduction Numbers from Epidemic Curves
Analysis and Simulation of Plant Disease Progress Curves
Predicting Disease Spread from Flow Data
Interface Package for the 'EpiGraphDB' Platform
Spatial and Network Based Individual Level Models for Epidemics
Continuous Time Distance-Based and Network-Based Individual
Level Models for Epidemics
Miscellaneous Tools for the 'R4Epis' Project
A Bayesian Tool for Near Real-Time Estimation of the
Reproduction Number
Functions and Data for "Epidemics: Models and Data in R"
Mathematical Modeling of Infectious Disease Dynamics
Epistatic Network Modelling with Forward-Time Simulation
Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters
Tools for the Analysis of Epidemiological Data
Basic Sensitivity Analysis of Epidemiological Results
Density Estimation with Soft Information by Exponential
Epi-splines
Detecting Epistatic Selection with Partially Observed Genotype
Data
Constructing an Epistemic Model for the Games with Two Players
Flexible Contingency Tables for Epidemiology
Small Helpers and Tricks for Epidemics Analysis
Early Detection of Public Health Threats from Twitter Data
A Toolkit for Using Whole Building Simulation Program
'EnergyPlus'
Endogenous Perturbation Analysis of Cancer
Clinical Coding of Patients with Kidney Disease
Exact Post Selection Inference with Applications to the Lasso
Ensemble Patch Transform, Visualization and Decomposition
Create Future 'EnergyPlus' Weather Files using 'CMIP6' Data
Methods for Analysing 'EQ-5D' Data and Calculating 'EQ-5D' Index
Scores
EQS Output Conversion to lavaan Functions
Tools for analyzing eQTL experiments: A complementary to Karl
Broman's 'qtl' package for genome-wide analysis
Testing the Equality of Two Covariance Matrices
Testing the Equality of a High Dimensional Set of Densities
Examine Measurement Invariance via Equivalence Testing and
Projection Method
Modeling, Confidence Intervals and Equivalence of Survival
Curves
Provides Tests and Graphics for Assessing Tests of Equivalence
Equivalence Test for the Means of Two Normal Distributions
Testing for Equivalence and Noninferiority
Uniformly Most Powerful Invariant Tests of Equivalence
Automated Spectral Deconvolution, Alignment, and Metabolite
Identification in GC/MS-Based Untargeted Metabolomics
Nonparametric Multiple Expectile Regression via ER-Boost
Fitting Tails by the Empirical Residual Coefficient of Variation
Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Fit, Simulate and Diagnose Exponential-Family Models for
Networks with Count Edges
Fit, Simulate and Diagnose Exponential-Family Random Graph
Models to Egocentrically Sampled Network Data
Fit, Simulate and Diagnose Exponential-Family Models for
Rank-Order Relational Data
User-specified Terms for the statnet Suite of Packages
Process Analysis for Exponential Random Graph Models
Local Health Department network data set
Exponential Random Graph Models for Small Networks
Check Arguments and Generate Readable Error Messages
Significance Analysis of Event-Related Potentials Data
Event-Related Potential (ERP) Data Exploration Made Easy
Event-related potentials (ERP) analysis, graphics and utility
functions
Exploratory Reduced Reparameterized Unified Model Estimation
Empirically Informed Random Trajectory Generation in 3-D
Estimate Number of Latent Factors and Factor Matrix for Factor
Analysis
Extended Empirical Saddlepoint Density Approximations
Indicators of Electoral Systems and Party Systems
Effect Size Computation for Meta Analysis
Modular Approach to Dose Finding Clinical Trials
Adaptive Enrichment Designs with Sample Size Re-Estimation
Ensemble Tool for Predictions from Species Distribution Models
ESEA: Discovering the Dysregulated Pathways based on Edge Set
Enrichment Analysis
Data Preparation During and After the Use of the Experience
Sampling Methodology (ESM)
Explore and Visualize Your Data Interactively
Joint Quantile and Expected Shortfall Regression
Efficient Stepwise Selection in Decomposable Models
Essential Functions not Included in Base R
Download Data from the European Social Survey on the Fly
Fundamentos De Estadistica Descriptiva e Inferencial
Calibrating Parameters for the Samejima's Continuous IRT Model
Efficient Sequential Testing with Evidence Ratios
Estimation of Heritability in High Dimensional Sparse Linear
Mixed Models using Variable Selection
Tools for Assessing Estimability of Linear Predictions
Perform the Joint Graphical Lasso and Selects Tuning Parameters
Maximum Likelihood Estimation for Probability Functions from
Data Sets
Fast Estimators for Design-Based Inference
Diagnostic Tools and Unit Tests for Statistical Estimators
Estimation of Four-Fold Table Cell Frequencies (Raw Data) from
Effect Size Measures
Estimating the Sample Mean and Standard Deviation from Commonly
Reported Quantiles in Meta-Analysis
An Implementation of Parametric and Nonparametric Event Study
Visualization and Estimation of Effect Sizes
Modeling Earthquake Data Using 'ETAS' Model
Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
for Earthquake Description
Interaction with the 'Ethereum' Blockchain
Ethnicity Annotation from Whole Exome Sequencing Data
Extract-Transform-Load Framework for Medium Data
Utility Functions to Execute Standard Extract/Transform/Load
Operations (using Package 'ff') on Large Data
Computes Moments of Univariate Truncated t Distribution
Creates Safety Results Summary in XML to Upload to EudraCT
eulerian: A package to find eulerian paths from graphs
Area-Proportional Euler and Venn Diagrams with Ellipses
Makes it Easier to Work with Daily 'netCDF' from EURO-CORDEX
RCMs
R Interface to the Europe PubMed Central RESTful Web Service
Historical Populations of European Cities, 1500-1800
Bayesian Single Arm Sample Size Calculation Software
Extreme Value Analysis with Goodness-of-Fit Testing
Parsing and Evaluation Tools that Provide More Details than the
Default
Collection of Model Evaluation Measure Functions
Sensitivity Analyses for Unmeasured Confounding and Other Biases
in Observational Studies and Meta-Analyses
Modelling Actual, Potential and Reference Crop
Evapotranspiration
Functions for Extreme Value Distributions
Bayesian Analysis in Extreme Value Theory
Graphical User Interface for the 'EventDetectR' Package
Regression Models for Event History Outcomes
Streaming Events and their Early Classification
Event Prediction for Time-to-Event Endpoints
Event-Specific Win Ratios for Terminal and Non-Terminal Events
Generalised Additive Extreme Value Models
Evidential Analysis of Genetic Association Data
Analysis of Scientific Evidence Using Bayesian and Likelihood
Methods
Reporting Tools for Sensitivity Analysis of Evidence Factors in
Observational Studies
Synthesizing Causal Evidence in a Distributed Research Network
Evidence Factors in Observational Studies
Extreme Value Mixture Modelling, Threshold Estimation and
Boundary Corrected Kernel Density Estimation
Comparative and Population Genetic Analyses
Tools for Evolutionary Quantitative Genetics
Important Concepts of Evolutionary Game Theory
Evolutionary Parameter Estimation for 'Repast Simphony' Models
Mean of order p, peaks over random threshold Hill and high
quantile estimates
Extreme Value Theory for Open Set Classification - GPD and GEV
Classifiers
Evolutionary Learning of Globally Optimal Trees
Goodness-of-Fit Tests for the Exponential and Two-Parameter
Weibull Distributions
Exact Tests and Confidence Intervals for 2x2 Tables
Exact P-Values and Matching Confidence Intervals for Simple
Discrete Parametric Cases
Inductive Confidence Intervals for the difference between two
proportions
Fast Extraction from Raster Datasets using Polygons
Monte Carlo Exact Tests for Log-linear models
Exact Distributions for Rank and Permutation Tests
Help for Writing Unit Tests Based on Function Examples
Question Generation in the 'MyLearn' XML Format
Automatic Generation of Exams in R for 'Sakai'
Confidence regions for exceedance sets and contour lines
Confidence Intervals for Exceedance Probability
Convenient Data Exchange with Microsoft Excel
A Wrapper of the 'JavaScript' Library 'jExcel'
Extracts Tabular Data from Excel Reports
Excerpt Structuring Comments from Your Code File and Set a Table
of Contents
Checks for Exclusion Criteria in Online Data
Excursion Sets and Contour Credibility Regions for Random Fields
A Fast and Scalable Exhaustive Feature Selection Framework
Calls Copy Number Variants from Targeted Sequence Data
Convert Gene EXPression Data to FBA FLUXes
Pacote Para Analise De Experimentos Com Graficos De Superficie
Resposta
Modular Differential Evolution for Experimenting with Operators
R Package for Designing and Analyzing Randomized Experiments
Modeling without data using expert opinion
Design of Discrete Choice and Conjoint Analysis
Tool For Analysis of Images in Experiments
Exponential Integral and Incomplete Gamma Function
Explanation of Predictions for Classification and Regression
Models
Interactive Interfaces for Results Exploration
A Tool for Large-Scale Exploratory Analyses
Multiple Effect Estimation of Chemicals in Environmental
Epidemiology
Exploratory Analysis with the Singular Value Decomposition
Spatial Analysis of Extra-Pair Paternity
Computing Expectations and Marginal Likelihoods for Permutations
An Exponential Stochastic Block Model for Interaction Lengths
Data Sets from "Forecasting with Exponential Smoothing"
Tables, Labels and Some Useful Functions from Spreadsheets and
'SPSS' Statistics
Fast, Reliable and Elegant Reproducible Research
Convenience Functions for Botanists to Create Specimens Indices
Extending the Range of Functions for Probability Distributions
Data Manipulation Extensions of 'Dplyr' and 'Tidyr'
Additional Families for Generalized Linear Models
Constructs the Exterior Match from Two Matched Control Groups
Maximum penalized likelihood estimation with extended lasso
penalty
An Extended Mallows Model and Its Hierarchical Version for
Ranked Data Aggregation
Extra-binomial approach for pooled sequencing data
Additional Univariate and Multivariate Distributions
Extra Binary Relational and Logical Operators
Astrobiology Equations Estimating Extraterrestrial Life
Extremely Randomized Trees (ExtraTrees) Method for
Classification and Regression
Summary Statistics for Geospatial Features
Extended RC Models for Contingency Tables
Estimation of Extreme Conditional Quantiles and Probabilities
Forecast Verification for Extreme Events
Extreme Value Statistics and Quantile Estimation
Estimation of Extreme Value Dependence for Time Series Data
Estimate Lower Extreme Quantile with the Censored Weibull MLE
and Censored Weibull Mixture
Econometric Analysis of Explosive Time Series
Open Source Ophthalmic Data Sets Curated for R
Import ASC Files from EyeLink Eye Trackers
Prepare/Analyse Eye Tracking Data for Reading
Organising and Analysing Eye-Tracking Data
Easy Analysis and Visualization of Factorial Experiments
Easy Interface to Effective Concentration Calculations
Task Oriented Interface for Exploratory Data Analysis
selects significant non-additive interaction between two
variables using fast GLM implementation
Avoid the Typical Working Directory Pain When Using 'knitr'
Easy Use of R via Shiny App for Basic Analyses of Experimental
Data
provide an easy to use framework to conduct simulation
Tunes AdaBoost, Elastic Net, Support Vector Machines, and
Gradient Boosting Machines
Change Point Detection in High-Dimensional Time Series Networks
'ATAforecasting' Modelling Interface for 'fable' Framework
Core Tools for Packages in the 'fable' Framework
Overfitting Bayesian Mixtures of Factor Analyzers with
Parsimonious Covariance and Unknown Number of Components
Create Easily Canvas in 'shiny' and 'RMarkdown' Documents
Fast Covariance Estimation for Sparse Functional Data
A C++ Framework for Plant-Plant Interaction IBMs
Bayesian Sparse Factor Analysis model for the inference of
pathways responsive to drug treatment
Instrumental Variables Estimation for 2^k Factorial Experiments
Combination of Factorial Methods and Cluster Analysis
Extract and Visualize the Results of Multivariate Data Analyses
Automatic Description of Factorial Analysis
Multivariate Exploratory Data Analysis and Data Mining
Factorial Optimal Designs for Two-Colour cDNA Microarray
Experiments
Post-Processing MCMC Outputs of Bayesian Factor Analytic Models
Set of Assumptions for Factor and Principal Component Analysis
Factor, Bi-Factor and Second-Order Copula Models
Design and Analysis for Factorial Experiments
Design and Analysis of a 2x2 Factorial Trial
Factor Model Estimation Using Proxy Variables
Graphical Presentation of Simple Contrasts
Bayesian quantile regression factor models
Identification of the Factors Affecting Species Richness
Bayesian Estimation of (Sparse) Latent Factor Stochastic
Volatility Models
Perform Factorial Analysis from 'FactoMineR' with a Shiny
Application
thin wrapper for the Factual.com server API
Variable Selection for Supervised Classification in High
Dimension
Distributions that are Sometimes Used in Hydrology
Functional Data Clustering Using Adaptive Density Peak Detection
Data from the Book "Multivariate Statistical Modelling Based on
Generalized Linear Models", First Edition, by Ludwig Fahrmeir
and Gerhard Tutz
Fair Data Adaptation with Quantile Preservation
Clustering for Data with Sensitive Attribute
Flexible Tool for Bias Detection, Visualization, and Mitigation
Faisal Conjoint Model: A New Approach to Conjoint Analysis
Simulates Data from a Data Frame of Different Variable Types
Finding Allele-Specific Copy Number in Next-Generation
Sequencing Data
Finding Allele-Specific Copy Number in Whole-Exome Sequencing
Data
Family Age-at-Onset Data Simulation and Penetrance Estimation
Statistical Tests of Familial Hypotheses
Probabilities for Pedigrees Given DNA Data
A Convex Formulation for Modeling Interactions with Strong
Heredity
Algorithm for Ranking Predictors Using Graphical Domain
Knowledge
Maximum Likelihood and Bayesian Estimation of Univariate
Probability Distributions
A Flexible Algorithm for Model Selection
Family Sequence Kernel Association Test for Rare and Common
Variants
Factor Analysis for Multiple Testing (FAMT) : simultaneous tests
under dependence in high-dimensional data
Penalized Likelihood Factor Analysis via Nonconvex Penalty
Building Kriging Models from FANOVA Graphs
Visualisation of Sequential Probability Distributions Using Fan
Charts
ANSI Control Sequence Aware String Functions
Evapotranspiration Based on FAO Penman-Monteith Equation
Influential Case Detection Methods for Factor Analysis and
Structural Equation Models
Modelization for Functional AutoRegressive Processes
Functions and Datasets for Books by Julian Faraway
Fast and Robust Deconvolution of Tumor Infiltrating Lymphocyte
from Expression Profiles using Least Trimmed Squares
Interactive Interface to Data Envelopment Analysis Modeling
High Performance Colour Space Manipulation
Fasano-Franceschini Test: A 2-D Kolmogorov-Smirnov Two-Sample
Test
Joint Segmentation of Correlated Time Series
Rmetrics - EBM and Asian Option Valuation
A Fast and Scalable Joint Estimator for Learning Multiple
Related Sparse Gaussian Graphical Models
Rmetrics - Analysing and Modelling Financial Assets
Analyze, Summarize, and Visualize Daily Streamflow Data
Fast Estimation of a Covariance Matrix by Banding the Cholesky
Factor
A Fast Solver for Parameterized LP Problems, Constrained L1
Minimization Approach to Sparse Precision Matrix Estimation and
Dantzig Selector
Fast Hierarchical Clustering Routines for R and 'Python'
Significant Interval Discovery with Categorical Covariates
Fine-Gray Regression via Forward-Backward Scan
Fast Differential Correlation Matrix Screening
Lasso and Elastic-Net Penalized Cox's Regression in High
Dimensions Models using the Cocktail Algorithm
Fast EM and Best-Subset Selection for CUB Models for Rating Data
Fast, Low Memory-Footprint Digests of R Objects
Fast Creation of Dummy (Binary) Columns and Rows from
Categorical Variables
Raster Image Processing and Vector Recognition
Fast and Exact Computation of Gaussian Stochastic Process
Fast 'Rcpp' Implementation of Gauss-Hermite Quadrature
Fast and Stable Fitting of Generalized Linear Models using
'RcppEigen'
Efficiently Using Gaussian Processes with Rcpp and RcppEigen
Fast Drawing and Shading of Graphs of Statistical Distributions
Robust Algorithm for Principal Component Analysis
Hierarchical Independent Component Analysis: a Multi-Scale
Sparse Non-Orthogonal Data-Driven Basis
FastICA Algorithms to Perform ICA and Projection Pursuit
A Fast Multiple-Kernel Method Based on a Low-Rank Approximation
Faster K-Medoids Clustering Algorithms: FastPAM, FastCLARA,
FastCLARANS
A Fast Laplace Method for Spatial Generalized Linear Mixed Model
Fast Probabilistic Record Linkage with Missing Data
A Fast Way to Calculate the p-Value of One or Multiple
Log-Rank-Tests
Fast Nonconvex Deconvolution of Calcium Imaging Data
Fast Computation of Multivariate M-Estimators
Fast Marching Method for Modelling Evolving Boundaries
Fast Computation of some Matrices Useful in Statistics
Fast Mutual Information Based Independence Test
Extremely Fast Implementation of a Naive Bayes Classifier
FastPCS Robust Fit of Multivariate Location and Scatter
Finds the Critical Sequential Point of Stability for a Pearson
Correlation
Faster Generation of Quantile Quantile Plots with Large Samples
Foundations and Applications of Statistics Using R (2nd Edition)
Fits the FastRCS Robust Multivariable Linear Regression Model
Sample Generalized Random Dot Product Graphs in Linear Time
Functions to Access Premier Hockey Federation and National
Hockey League Play by Play Data
Fast Interactive Framework for Web Scripting Using R
Efficient Learning of Word Representations and Sentence
Classification
Fast Utility Function for Time Parsing and Conversion
A Suite of High-Performance Packages for Statistics and Data
Manipulation
Two-Locus Family-Based Association Test with Polytomous Outcome
Quantification of Fate Bias in Multipotent Progenitors
Kiener Distributions and Fat Tails in Finance
Fault Trees for Risk and Reliability Analysis
Find the URL to the 'Favicon' for a Website
Functions and Datasets for "Forest Analytics with R"
An Extensible Approach to Flux Balance Analysis
Gene by Environment Interaction and Conditional Gene Tests for
Nuclear Families
Algorithm for Searching the Space of Gaussian Directed Acyclic
Graph Models Through Moment Fractional Bayes Factors
FISH Based Normalization and Copy Number inference of SNP
microarray data
Analyzing and Managing Facebook Ads from R
Association Football (Soccer) Ranking via Poisson Regression
Fast Algorithms to Bootstrap Receiver Operating Characteristics
Curves
The Full Bayesian Evidence Test, Full Bayesian Significance Test
and the e-Value
Standard Evaluation-Based Multivariate Function Composition
Floating Catchment Area (FCA) Methods to Calculate Spatial
Accessibility
Basics of Certificates and Structured Products Valuation
Full Length Circular RNA Sequence Extraction and Classification
Inference of Fuzzy Cognitive Maps (FCMs)
Rmetrics - Bivariate Dependence Structures with Copulae
Functional Concurrent Regression for Sparse Data
A Method to Search for Differentially Expressed Genes and to
Detect Recurrent Chromosomal Copy Number Aberrations
A Collection of Fluorescence Fluctuation Spectroscopy Analysis
Methods
Estimation and Inference for the Fractionally Cointegrated VAR
Measuring functional diversity (FD) from multiple traits, and
other tools for functional ecology
Functional Data Analysis and Utilities for Statistical Computing
Autocorrelation Function for Functional Time Series
Functional Data Analysis for Density Functions by Transformation
to a Hilbert Space
Functional Data Analysis: K-Mean Alignment
Functional Data Analysis in a Mixed Model Framework
Model-Based Clustering for Functional Data with Covariates
Analysis of Variance for Univariate and Multivariate Functional
Data
Outlier Detection Tools for Functional Data Analysis
Functional Data Analysis and Empirical Dynamics
Statistical Analysis of Functional and Spatial Data, Based on
Regression with PDE Regularization
Partially Observed Integrated Functional Depth
Interval Testing Procedure for Functional Data
Fast Implementation of the Diffusion Decision Model
Data Mining and R Programming for Beginners
Dynamic Model Averaging and Dynamic Model Selection for
Continuous Outcomes
Permutation-Based FDR Point and Confidence Interval Estimation
False Discovery Rate Procedures Under Discrete and Heterogeneous
Null Distributions
Estimate, Plot, and Summarize False Discovery Rates
Compute Sample Size that Meets Requirements for Average Power
and FDR
FDR-Control in Multiscale Change-Point Segmentation
Estimation of (Local) False Discovery Rates and Higher Criticism
Frequency Distribution Tables, Histograms and Polygons
False Discovery Exceedance Controlling Multiple Testing
Procedures
Classification and Feature Selection for microRNA/mRNA
Interactions
Feature Extraction and Statistics for Time Series
Local Inferential Feature Significance for Multivariate Kernel
Density Estimation
Measurement Level Independent Feature Correlation Matrix
Turn Features On and Off using Feature Flags
Creates a Model Matrix via Feature Hashing with a Formula
Interface
Feature Importance for Partitional Clustering
Feature Extraction for Discretely-Sampled Functional Data
Feature Selection Engine to Remove Features with Minimal
Predictive Power
Interact with the 'Python' Module 'Featuretools'
Some Helper Functions that Help Create Features from Data
Data Package for the 2016 United States Federal Elections
Fechnerian Scaling of Discrete Object Sets
Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Client Package for the U.S. Federal Register API
Fast, Flexible, and User-Friendly Record Linkage Methods
Text Analysis of the US Code of Federal Regulations
Unofficial API for Fedstat (EMISS) for Automatic and Efficient
Data Queries
Estimating Fixed Effects Individual Slope Models
Functional Help for Functions, Objects, and Packages
Fixed Effects Nonlinear Maximum Likelihood Models
Fixed Effects Logistic Model with High-Dimensional Parameters
Estimation and Fit Assessment of Frailty Exponential Random
Graph Models
Facilitate Exploration of touRR optimisatioN
Fertilizer Response Curve Analysis by Bootstrapping Residuals
Rmetrics - Pricing and Evaluating Exotic Option
Structured Products Valuation for
ExpressCertificates/Autocallables
Rmetrics - Modelling Extreme Events in Finance
Memory-Efficient Storage of Large Data on Disk and Fast Access
Functions
Basic Statistical Functions for Package 'ff'
Download Data from Kenneth French's Website
Force field simulation for a set of points
Stress Test Historical Scenarios with Fully Flexible
Probabilities
API Client for Fantasy Football League Platforms
Forgetting Factor Methods for Change Detection in Streaming Data
Fast FFT and DCT Based on the FFTW Library
Wrapper for 'FFTW3' Includes: One-Dimensional, Two-Dimensional,
Three-Dimensional, and Multivariate Transforms
Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Utilities for Fundamental Geo-Spatial Data
Access Small ForestGEO Datasets For Examples
A Feasible Generalized Least Squares Estimator for Regression
Analysis of Outcomes with Network Dependence
Partial Separability and Functional Gaussian Graphical Models
Feature Grouping and Selection Over an Undirected Graph
Fractional Hot Deck and Fully Efficient Fractional Imputation
Fitting Hidden Markov Models to Financial Data
Tests for Right and Interval-Censored Survival Data Based on the
Fleming-Harrington Class
Provide functions for forest inventory calculations
Focused Information Criteria for Model Comparison
Classical, Reloaded and Adaptive FastICA Algorithms
A Shiny App for Design of Experiments in Life Sciences
A Lightweight and Flexible Web Framework
Easily Arrange External Figures with Patchwork Alongside
'ggplot2' Figures
Transform Files to 'microtable' Object with 'microeco' Package
File-Backed Array for Out-of-Memory Computation
Wrapper for the Filebin File Sharing API
File-Backed Matrix Class with Convenient Read and Write Access
Effective File Navigation from the R Console
Matrix Completion, Imputation, and Inpainting Methods
Rmetrics - Importing Economic and Financial Data
Quickly Create Elegant Regression Results Tables and Plots when
Modelling
Financial Analysis and Regression Diagnostic Analysis
Financial Instrument Model Infrastructure and Meta-Data
Classifies implicit trading activity from market quotes and
computes the probability of informed trading
Interface for the 'Finnish Biodiversity Information Facility'
API
Time Value of Money, Time Series Analysis and Computational
Finance
Covariance Matrix Estimation and Regularization for Finance
Find all root(s) of the equation and Find root(s) of the
equation by dichotomy
Find Pattern in Files of All Branches of a 'git' Repository
Functions to Find an Acceptable Python Binary
Find Code Snippets, R Scripts, R Markdown, PDF and Text Files
with Pattern Matching
A View Generator for Multidimensional Data
Fine-Scale Population Analysis (Rewrite for
Gene-Trait-Environment Interaction Analysis)
Functions to Operate on Binary Fingerprint Data
Computation of the Probability of Ruin Within a Finite Time
Horizon
Test for Finiteness of Moments in a Distribution
Financial Data from U.S. Securities and Exchange Commission
Companion to Tsay (2005) Analysis of Financial Time Series
Access to Average Purchase Price of Vehicles in Brazil
Lightweight Federal Information Processing System (FIPS) Code
Information Retrieval
Induced Priors in Bayesian Mixture Models
Integrates 'Google Firebase' Authentication Method with 'Shiny'
Prediction of Wildland Fire Behavior and Hazard
Effective Protein Structural Data Visualisation and Exploration
A Small Collection of Fish Population Datasets
The FisherEM Algorithm to Simultaneously Cluster and Visualize
High-Dimensional Data
Fisheye and Hyperbolic-space-alike Interactive Visualization
Tools in R
Iterative FISH-based Calibration of Hi-C Data
Dataset of Measurements of Fish Species at Kirkkojarvi Lake,
Finland
Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta
Log-Normal Models
Phylogenies for a List of Finned-Ray Fishes
Analytical Tool for Aquatic Respirometry
Fuzzy Inference System Design and Optimization
Transcriptomic Dynamics Models in Field Conditions
Fit ARMA or ARIMA Using Fast MLE Algorithm
Help to Fit of a Parametric Distribution to Non-Censored or
Censored Data
Mean and Covariance Matrix Estimation under Heavy Tails
Finite Mixture Model Fitting of Lifespan Datasets
Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD
Genotype Calling for Bi-Allelic Marker Assays
FITS (Flexible Image Transport System) Utilities
Fit Hundreds of Theoretical Distributions to Empirical Data
fitTetra is an R package for assigning tetraploid genotype
scores
Fit Univariate Mixed and Usual Distributions
Data and Code Behind the Stories and Interactives at
'FiveThirtyEight'
Algorithms for Finding Fixed Point Vectors of Functions
The Distribution of Distances Between Discrete Events in Fixed
Time
An R Client for the "Fixer.io" Currency API
Fixed Sequence Multiple Testing Procedures
Fast Kalman Filtering Through Sequential Processing
Feature-Based Landscape Analysis of Continuous and Constrained
Optimization Problems
Highlight, Annotate, and Format your R Source Code
Fits Piecewise Constant Models with Data-Adaptive Knots
Interpretable Matching for Causal Inference
Functional Latent Data Models for Clustering Heterogeneous
Curves ('FLaMingos')
Implementation of optimal hierarchical clustering
Shed Light on Black Box Machine Learning Models
Indices and Tests for Assessing the Flatness of (Rank)
Histograms
Transforms Contingency Tables to Data Frames, and Analyses Them
Obtaining a Flat Table from Pivot Tables
Tools for Working with XML Files as R Dataframes
Smoother Change Tracking and Versioning for R Packages
R Markdown Format for Flexible Dashboards
Tools to Work with the Flexible Dirichlet Distribution
Generalized Additive Models with Flexible Response Functions
Flexible Latent Trait Metrics using the Filtered Monotonic
Polynomial Item Response Model
Finite Mixture Modeling of Generalized Nonlinear Models
Flexible Parametric Survival and Multi-State Models
Flexible and Interpretable Non-Parametric Tests of
Exchangeability
Parses Code, Creates Partial Code Builds, Delivers Code Movie
Implement a Countdown in 'RMarkdown' Documents and 'shiny'
Applications
A Wrapper of JavaScript Library 'flipdown.js'
Flexible Inference via Permutations in R
Robust Score Testing in GLMs, by Sign-Flip Contributions
Convert Files to and from Binary Objects (BLOBs)
Process Synchronization Using File Locks
Statistical Methods for the (Regional) Analysis of Flood
Frequency
Tools for Interacting with the Brazilian Flora 2020
View and Browse Code Using Flow Diagrams
Tools for characterizing flowering traits
Forecasts future values of a univariate time series
Streamlining Design and Deployment of Complex Workflows
The Environmental Costs of Flow Regulation
Daily Streamflow Trend and Change Point Screening
Path Algorithm for the General Fused Lasso Signal Approximator
Mining Rigs for Specialized Subset Sum, Multi-Subset Sum,
Multidimensional Subset Sum, Multidimensional Knapsack,
Generalized Assignment Problems
Influenza-Attributable Mortality with Distributed-Lag Models
Estimate Insect Survival from Fluorescence Data
Flux rate calculation from dynamic closed chamber measurements
Data Sets from "Forecasting: Methods and Applications" by
Makridakis, Wheelwright & Hyndman (1998)
Factorial Experiments with Minimum Level Changes
Efficient Estimation of Clustered Current Status Data
A Flexible Modelling Environment for Inverse Modelling,
Sensitivity, Identifiability and Monte Carlo Analysis
Tools of Heterogeneity Pursuit via Finite Mixture Effects Model
Fast Class Noise Detector with Multi-Factor-Based Learning
Rhythmic Patterns Modeling by FMM Models
Filtered Monotonic Polynomial IRT Models
R Access to the 'FMP Cloud' and 'Financial Modeling Prep' API
Functional MRI Quality Assurance Routines
Scrubbing and Other Data Cleaning Routines for fMRI
Functions for Medical Statistics Book with some Demographic Data
Regression Models with Finite Mixtures of Skew Heavy-Tailed
Errors
Rmetrics - Analysing and Modeling Multivariate Financial Return
Distributions
Fast Nearest Neighbor Search Algorithms and Applications
Rmetrics - Nonlinear and Chaotic Time Series Modelling
Feature Ordering by Conditional Independence
Summarize CRAN Check Results in the Terminal
Fit Continuous-Time State-Space and Latent Variable Models for
Quality Control of Argos Satellite (and Other) Telemetry Data
and for Estimating Movement Behaviour
Creates and Manages Folder Functions for Portable Large-Scale R
Analysis
Datasets for Teaching Archaeology and Paleontology
Fonts with 'Bitstream Vera Fonts' License
Additional 'ggplot2' Themes Using 'Hind' Fonts
Additional 'ggplot2' Themes Using 'M+' Fonts
Food Network Inference and Visualization
visualisation and analysis of food web networks
Penalties in the German Men's Football Bundesliga
Rmetrics - Pricing and Evaluating Basic Options
Field Observation Quick Analysis Toolkit
Foraminifera and Community Ecology Analyses
Tools for Working with Categorical Variables (Factors)
Forecasting Functions for Time Series and Linear Models
Convenient Functions for Ensemble Time Series Forecasts
Time Series Forecasting with Machine Learning Methods
Forecasting for Stationary and Non-Stationary Time Series
Test Bench for the Comparison of Forecast Methods
Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata',
'Systat', 'Weka', 'dBase', ...
Statistical Methods in Forensic Genetics
Statistical tools for the interpretation of forensic DNA
mixtures
Systems Insights from Generation of Hydroclimatic Timeseries
Approximate False Positive Rate Control in Selection Frequency
for Random Forest
Fitting and Assessing Neighborhood Models of the Effect of
Interspecific Competition on the Growth of Trees
A Unified Framework for Random Forest Prediction Error
Estimation
Statistical Modelling for Plant Size Distributions
Forest Health Evaluation System at the Forest Stand Level in
China
Design-Based Global and Small-Area Estimations for Multiphase
Forest Inventories
Advanced Forest Plot Using 'grid' Graphics
Ecosystem and Canopy Structural Complexity Metrics from LiDAR
Implements the Forest-R.K. Algorithm for Classification Problems
Projecting Customer Retention Based on Fader and Hardie
Probability Models
Foraminiferal Image Analysis and Test Measurement
Imputation of Missing Values Through a Forward Imputation
Algorithm
Functions from the 2nd Italian Forest Inventory (INFC)
Programmatic Utilities for Manipulating Formulas, Expressions,
Calls, Assignments and Other R Objects
Dynamic Generation and Quality Checks of Formula Objects
Forensic Pedigree Analysis and Relatedness Inference
Automatic Processing of TLS Point Cloud Data for Forestry
Purposes
Palaeoecological and Palaeogeographical Analysis Tools
Bayesian 4 Parameter Item Response Model
A Game for Human vs. Human or Human vs. AI
Parsimonious Hidden Markov Models for Four-Way Data
Restricted MLE for Functional Principal Components Analysis
Two Dimensional Functional Principal Component Analysis
Three Dimensional Functional Component Analysis
Predictive Confidence Bands for Functional Time Series
Forecasting
Reliable Comparison of Floating Point Numbers
Automatic Distribution Graphs Using Formulas
Segmentation using Optimal Partitioning and Function Pruning
Rmetrics - Portfolio Selection and Optimization
Computing the noncentrality parameter of the noncentral F
distribution
Data for "Forecasting: principles and practice"
Data for "Forecasting: Principles and Practice" (2nd Edition)
Data for "Forecasting: Principles and Practice" (3rd Edition)
Approximation of First-Passage-Time Densities for Diffusion
Processes
Testing Hypotheses via Fuzzy P-Value in Fuzzy Environment
Fractionally Differenced ARIMA aka ARFIMA(P,d,q) Models
Numerical CDFs for Fractional Unit Root and Cointegration Tests
Fraction Proliferation via a Quiescent Growth Model
Simulation and Parameter Estimation of Randomized Sierpinski
Carpets using the p-p-p-q-Model
Estimation of Fractal Dimension of a Black Area in 2D and 3D
(Slices) Images
Assessing and Visualizing Fragility of Clinical Results with
Binary Outcomes
Fitting Frailty Models with the EM Algorithm
Frailty Models via Hierarchical Likelihood
Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints
General Semiparametric Shared Frailty Model
Simulation of the Growth of Framboidal and Sunflower Pyrite
Financial Risk Modelling and Portfolio Optimisation with R
Automatic Data Processing and Visualization for FRAP
Fuzzy Rule-Based Systems for Classification and Regression Tasks
Fast Regularized Canonical Correlation Analysis
Statistical Analysis for Random Objects and Non-Euclidean Data
Read and Write 'FreeSurfer' Neuroimaging File Formats
Tree Method for High Dimensional Longitudinal Data
Rmetrics - Regression Based Decision and Prediction
Generate Open or Closed Interpolating Curves
Download Data Sets from Kenneth's French Finance Data Library
Site
FREQ: Estimate population size from capture frequencies
Frequency Domain Based Analysis: Dynamic PCA
Functional Time Series: Dynamic Functional Principal Components
Frequency Profiles Computing and Plotting
Make Quick Descriptive Tables for Categorical Variables
Spectral Decomposition of Connectedness Measures
Implementation of Frequent-Directions Algorithm for Efficient
Matrix Sketching
Screened Selection Design with Survival Endpoints
Feature Selection Algorithms for Computer Aided Diagnosis
Create Custom 'Bootstrap' Themes to Use in 'Shiny'
Fractional Factorial Designs with 2-Level Factors
Catalogues of resolution IV 128 run 2-level fractional
factorials up to 33 factors that do have 5-letter words
The Entire Transcript from Friends in Tidy Format
Utilities for the Forest Research Institute of the State
Baden-Wuerttemberg
Regression Analysis of Fractional Responses
Regression Analysis of Fractional Responses Under Unobserved
Heterogeneity
Regression Analysis of Panel Fractional Responses
The Generalized Hyperbolic Distribution, Related Distributions
and Their Applications in Finance
Prediction of Minimum Temperature for Frost Forecasting in
Agriculture
Functions for Calculating Fit-Robustness of CNA-Solutions
Evaluation Tools for Assessing Climate Adaptation of Fruit Tree
Species
Cross-Platform File System Operations Based on 'libuv'
Simple Fisheries Stock Assessment Methods
Data to Support Fish Stock Assessment ('FSA') Package
Managing and Visualizing Brain Surface Data
Automated Feature Selection from 'caret'
Forward Stepwise Deep Autoencoder-Based Monotone NLDR
Robust Data Analysis Through Monitoring and Dynamic
Visualization
'Rcpp' Implementation of 'FSelector' Entropy-Based Feature
Selection Algorithms with a Sparse Matrix Support
Import and Analysis of OMR Data from FormScanner
An Interface Between the 'FSK-ML' Standard and 'R'
Wrapper Functions for 'FSL' ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')
Feature Selection for Multivariate Time Series
Imputation of Time Series Based on Fuzzy Logic
Rosenthal's Fail Safe Number and Related Functions
Estimating the Number of Factors in EFA with Out-of-Sample
Prediction Errors
Social Relations Analyses with Roles ("Family SRM")
Fused Sparse Structural Equation Models to Jointly Infer Gene
Regulatory Network
Generate Fully-Sequential Space-Filling Designs Inside a Unit
Hypercube
Lightning Fast Serialization of Data Frames
Unified Sequence-Based Association Tests Allowing for Multiple
Functional Annotation Scores
A Wrapper for the API of the Danish Parliament
Features and Strings for Nonparametric Regression
Rmetrics - Trading and Rebalancing Financial Instruments
Feature Extraction from Biological Sequences
R Interface to 'tslib' (a Time Series Library in C++)
Spectral Density Estimation and Comparison for Functional Time
Series
Framework for Unified Estimation in Lognormal Models
FUzzy GEnetic, a machine learning algorithm to construct
prediction model based on fuzzy logic
Sensitivity Analysis Optimized for Matched Sets of Varied Sizes
Plot Full ROC Curves using Eyewitness Lineup Data
Clean and Visualize Over Expression Results from
'ConsensusPathDB'
Functional Cheng and Church Bi-Clustering
Convenience Functions by Michael Chirico
Model-Free Functional Chi-Squared and Exact Tests
Functional Profiling of Microarray Expression Data
Functional Clustering of Redundant Components of a System
Easy Computation of Alpha Functional Diversity Indices
Clustering in the Discriminative Functional Subspace
Psychometric Functions from the Waller Lab
Gaussian Process Models for Scalar and Functional Inputs
Univariate and Multivariate Model-Based Clustering in
Group-Specific Functional Subspaces
Rmetrics - Modelling Trends and Unit Roots
Model-Based Co-Clustering of Functional Data
Functional Mediation for a Distal Outcome
Exploratory Data Analysis and Data Preparation Tool-Box
Time-Based Joins to Analyze Sequences of Events
Funnel Plots for Comparing Institutional Performance
Simple Utility Providing Terminal Access to all R Functions
Functional Regression for Irregularly Timed Data
Apply Mapping Functions in Parallel using Futures
Fused Lasso for High-Dimensional Regression over Groups
Embedding 'FusionCharts Javascript' Library in R
Clustering and Feature Screening using L1 Fusion Penalty
A framework for working in a functional programming paradigm in
R
Interim Analysis of Operational Futility in Randomized Trials
with Time-to-Event Endpoints and Fixed Follow-Up
Unified Parallel and Distributed Processing in R for Everyone
Apply Function to Elements in Parallel using Futures
A Future API for Parallel and Distributed Processing using
'batchtools'
A Future API for Parallel Processing using 'callr'
Find, Characterize, and Explore Extreme Events in Climate
Projections
Exact calculation of fuzzy decision rules for multiple testing
Join Tables Together on Inexact Matching
Multi-Criteria Decision Making Methods for Fuzzy Data
Apply Two Fuzzy Numbers on a Monotone Function
Fuzzy Quantification of Common and Rare Species
Fuzzy Rank Tests and Confidence Intervals
Resampling Methods for Triangular and Trapezoidal Fuzzy Numbers
Fuzzy Similarity in Species Distributions
Fuzzy Stationary Probabilities from a Sequence of Observations
of an Unknown Markov Chain
Statistical Methods for Trapezoidal Fuzzy Numbers
Selecting Variables in Regression Models
Fire Weather Index System and Fire Behaviour Prediction System
Calculations
Fast Wild Cluster Bootstrap Inference for Linear Regression
Models
Fresh Weight Determination from Visual Image of the Plant
A package performing Dynamic Bayesian Network inference
Find and Fill Gaps in Metabolic Networks
Grain-Size Statistics and Description of Sediment
Interactively Visualize Genetic Mutation Data using a
Lollipop-Diagram
Abbreviating Items Measures using Genetic Algorithms
Framework for Generalized Subspace Pattern Mining
Genetic Similarity in User-Based Collaborative Filtering
GAD: Analysis of variance from general principles
A Genetic Algorithm for Learning Directed Acyclic Graphs
Gadget is the Globally-Applicable Area Disaggregated General
Ecosystem Toolbox
First Passage Time Simulation for Gaussian Diffusion Processes
Genetic and Isotopic Assignment Accounting for Habitat
Suitability
Machine Learning-Based Analysis of Potential Power Gain from
Passive Device Installation on Wind Turbine Generators
Graphical Extension with Accuracy in Parameter Estimation
(GAIPE)
Atlas of Living Australia (ALA) Data and Resources in R
Collection of Packages for Internet Marketing
Genomic Annotation in Livestock for Positional Candidate LOci
Genetic Algorithms and C-Steps Based LTS (Least Trimmed Squares)
Estimation
Interface to Galvanize 'Highbond' Internal Audit Software
Fit the Gambin Model to Species Abundance Distributions
One-Dimensional Random Walks Through Simulation of the Gambler's
Ruin Problem
Estimating multistate models using gamboost()
Functions and Data for a Course on Modern Regression and
Classification
Generalized Additive Models for Bivariate Conditional Dependence
Structures and Vine Copulas
Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for
Binary Classification
Palettes Inspired in the TV Show "Game of Thrones"
Statistical Estimation of Game-Theoretic Models
Genetic Algorithm for Sequential Symmetric Games
Tools for Calculating Allocations in Game Theory
Generalised Additive Models for Location Scale and Shape
Extra Additive Terms for Generalized Additive Models for
Location Scale and Shape
Fitting an Interval Response Variable Using `gamlss.family'
Distributions
Generating and Fitting K-Inflated 'discrete gamlss.family'
Distributions
Data for Generalised Additive Models for Location Scale and
Shape
Distributions for Generalized Additive Models for Location Scale
and Shape
Parallel Computations for Distributional Regression
Fitting Mixed (Inflated and Adjusted) Distributions
Extra Lasso-Type Additive Terms for GAMLSS
Fitting Mixture Distributions with GAMLSS
Fitting non linear parametric GAMLSS models
Spatial Terms in Generalized Additive Models for Location Scale
and Shape Models
Generating and Fitting Truncated `gamlss.family' Distributions
Bimodal Skew Symmetric Normal Distribution
Generalized Additive Mixed Models using 'mgcv' and 'lme4'
Comparing Nonlinear Curves and Surface Estimations by
Semiparametric Methods
Dose Rate Estimation from in-Situ Gamma-Ray Spectrometry
Measurements
Classic Gamma Regression: Joint Modeling of Mean and Shape
Parameters
Generalized Additive Mixed Model Analysis via Slice Sampling
Robust and Sparse Regression via Gamma-Divergence
Fit Regularization Path for Generalized Additive Models
Generate Generative Data for a Data Source
Gene Association Network-Based Pathway Analysis (GANPA)
Conservation Indicators using Spatial Information
Searching Parsimony Models with Genetic Algorithms
Drawing Gapped Cluster Heatmap with 'ggplot2'
The 'Tidymodels' Extension for GARCH Models
Estimating a GARCHSK Model and GJRSK Model
Gene and Region Counting of Mutations ("GARCOM")
Fitting and Forecasting Gegenbauer ARMA Time Series Models
Generalized Array Arithmetic for Ragged Arrays with Named
Margins
Genetic Algorithm (GA) for Variable Selection from
High-Dimensional Data
Greenhouse Gas Flux Calculation from Chamber Measurements
Train and Apply a Gaussian Stochastic Process Model
Analyzing Gastric Emptying from MRI or 'Scintigraphy'
Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
Easily Gate or Select Points on a Scatter Plot
Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Lotka-Volterra Models for Gause's 'Struggle for Existence'
The Gaussian Covariate Method for Variable Selection
Difference measures for multivariate Gaussian probability
density functions
The Greatest Mathematician Since Antiquity
Inference, Goodness-of-Fit and Forecast for Univariate Gaussian
Hidden Markov Models
Collection of functions for Gaussian quadrature
Tabular Data Suppression using Gaussian Elimination
Multi-Trait Dissimilarity with more Uniform Contributions
Generalize Lambda Distribution and Generalized Bootstrapping
Generalized Beta Distribution of the Second Kind: Properties,
Likelihood, Estimation
Estimation of the Generalised Beta Distribution of the Second
Kind from Grouped Data
Generalized Beta and Beta Prime Distributions
Generalized Berk-Jones Test for Set-Based Inference in Genetic
Association Studies
Automated Boosted Regression Tree Modelling and Mapping Suite
Utilities for processing Rd objects and files
Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data
Hyperparameter Search for Gradient Boosted Trees
Simulation of Real and Complex Numbers and Small Programming
Utilities
Guided Correction Approach for Inherited bias (GCAI.bias)
A Data Manipulation and Analysis Package for Calcium Indicator
Data
Simple Peak Alignment for Gas-Chromatography Data
Graph-based two-sample tests for categorical data
'GPU'/CPU Benchmarking in Debian-Based Systems
LASSO and Elastic Net (Adaptive) Penalized Least Squares,
Logistic Regression, HHSVM, Squared Hinge SVM and Expectile
Regression using a Fast GCD Algorithm
Analysis of Geostatistical Count Data using Gaussian Copulas
Bayesian Meta-Analysis of Pleiotropic Effects Using Group
Structure
Implements Generic Composite Similarity Measure
Geographical Detectors for Assessing Spatial Factors
Datasets for the Book Graphical Data Analysis with R
Earth Observation Data Cubes from Satellite Image Collections
Wrappers for 'GDAL' Utilities Executables
Wrappers for the Geospatial Data Abstraction Library (GDAL)
Utilities
Various R Programming Tools for Data Manipulation
A Toolbox for Geometric Data Analysis and More
Download, Slice, and Normalize GDELT V1 Data
Distances and Routes on Geographical Grids
Tools to Work with Google's 'DNS'-over-'HTTPS' ('DoH') API
IO for GAMS GDX Files using 'data.table'
Adaptive Association Tests for Multiple Phenotypes using
Generalized Estimating Equations (GEE)
Bias-Corrected GEE for Cluster Randomized Trials
Marginal Proportional Hazards Mixture Cure Models with
Generalized Estimating Equations
Mediation Analysis for Generalized Linear Models Using the
Difference Method
Modified Variance Estimators for Generalized Estimating
Equations
Calculate Generalized Eigenvalues, the Generalized Schur
Decomposition and the Generalized Singular Value Decomposition
of a Matrix Pair with Lapack
Misspecified Models for Gene-Environment Interaction
File Conversion for 'Gem Infrasound Logger'
Network Meta-Analysis Using Bayesian Methods
Generalized Two-Stage Designs for Phase II Single-Arm Studies
General Engine for Eco-Evolutionary Simulations
Classes and Methods to Use Genetic Algorithms for Feature
Selection
Global ENvironmental ASsessment Information System (GENASIS)
computational tools
Analysis and Visualization Tools for Genetic Barcode Data
Clopper-Pearson Confidence Interval and Generalized Binomial
Distribution
Predict Gender from Names Using Historical Data
Predict Gender from Brazilian First Names
This is a Collection of Functions to Analyse Gender Differences
Segmentation and Classification of Accelerometer Data
Visualisation of Raw or Segmented Accelerometer Data
Gene Expression Clustering and Gene Network
Identification of Periodically Expressed Genes
Easily Downloads a Gene Expression Dataset from a GEO Code and
Retrieves the Gene Symbols of Its Probesets
A Pipeline to Define Gene Families in Legumes and Beyond
Profiling a gene list into GOslim or KEGG function pie
Belief Propagation in Genotype-Phenotype Networks
Genetic Epidemiology Design and Inference
Population Genetic Data Analysis Using Genepop
Generalized Correlations, Causal Paths and Portfolio Selection
Goodness of Fit Tests for Logistic Regression Models
Test for Conditional Independence Based on the Generalized
Covariance Measure (GCM)
Credible Visualization for Two-Dimensional Projections of Data
Blinder-Oaxaca Decomposition for Generalized Linear Model
Generate Data Containing Fake Personally Identifiable
Information
Common S3 Generics not Provided by Base R Methods Related to
Model Fitting
Estimate Gender from Names in Spanish and Portuguese
Statistical Tools for the Analysis of Multi Environment
Agronomic Trials
Identify Favorable Subsets of Germplasm Collections
Spatial Graph-Theoretic Genetic Gravity Modelling
The Forward Imputation: A Sequential Distance-Based Approach for
Imputing Missing Data
Goodness-of-Fit for Univariate Hidden Markov Models
Fast, Robust, and Outlier Resistant Hierarchical Clustering
The Genie++ Hierarchical Clustering Algorithm with Noise Points
Detection
Easily Access Song Lyrics from Genius.com
Functions for generating and manipulating binned kernel density
estimates
Path Algorithm for Generalized Lasso Problems
Implements Generalized Meta-Analysis Using Iterated Reweighted
Least Squares Algorithm
Finding the DNA and Protein Sequences of Any Genomic or
Proteomic Loci
Methods for Analysing Forensic Ancestry Informative Markers
Detecting Signatures of Local Adaptation Based on Ancestry
Trajectories
'Plot genome wide values for all chromosomes'
Models Dealing with Spatial Dependency in Genomic Data
Circular Genomic Permutation using Genome Wide Association
p-Values
Collection of Tools for Genomic Data Analysis
Plot Publication-Grade Gene and Genome Maps
Simulation of Discrete Random Variables with Given Correlation
Matrix and Marginal Distributions
A Genome-Wide Scan Statistic Framework for Whole-Genome Sequence
Data Analysis
Generalized Pathmox Approach Segmentation Tree Analysis
Power Calculations Under Genetic Model Misspecification
Generalized Ridge Trace Plots for Ridge Regression
Predict Epidemic Curves with Generalized SEIR Modeling
Generates Data Sets for Class Demonstrations
Resampling Based Yield Stability Analyses
A Generalized Multiclass Support Vector Machine
R Shiny App for Creating Simplified Trial Summary (TS) Domain
Spline Based Window Boundaries for Genomic Analyses
Analysis of Geostatistical Data using Bayes and Empirical Bayes
Methods
Download Official Spatial Data Sets of Brazil
Implementing Methods for Spatial Fuzzy Unsupervised
Classification
A geometrical Approach to Differential expression and gene-set
enrichment
Stratified Heterogeneity Measure, Dominant Driving Force
Detection, Interaction Relationship Investigation
Fast, Dependency-Free Geodesic Distance Calculations
Methods for Calculating Gradient Surface Metrics
3D-Visualization of Geoelectric Resistivity Measurement Profiles
'ggplot2' Faceting Utilities for Geographical Data
Spatial Prediction for Function Value Data
Spatial Data Processing for Decision Making
Kriging Method for Spatial Functional Data
Ordinary Functional Kriging Using Fourier Smoothing and Gaussian
Quadrature
Select Sparse Geoadditive Models for Spatial Prediction
Turn Geospatial Polygons into Regular or Hexagonal Grids
Convert Data from and to 'GeoJSON' or 'TopoJSON'
Web-Processing of Large Gridded Datasets
Geographic Tools for Studying Gerrymandering
Data for topographic and Geologic Mapping
Tools for Reading and Writing ISO/OGC Geographic Metadata
Generate and Modify Interoperable Geometric Shapes
Convert Between R Objects and Geometric Structures
Mesh Generation and Surface Tessellation
Geometric Morphometric Analyses of 2D/3D Landmark Data
Interface to the "Geonames" Spatial Query Web Service
Intensity Estimation on Geometric Networks with Penalized
Splines
Geophysics, Continuum Mechanics, Gravity Modeling
Calculating Geographic Range from Occurrence Data
Robust Geostatistical Analysis of Spatial Data
Open Source Geometry Engine ('GEOS') R API
Smallest Enclosing Disc for Latitude and Longitude Points
Geostatistical Analysis and Design of Optimal Spatial Sampling
Networks
Spatio-Temporal; Inverse Distance Weighting and Radial Basis
Functions with Distance-Based Regression
An Introduction to Statistics for Geoscientists
Processing various types of data on GEO and TCGA
Tools to Improve the Use of Geostatistic
An R Plug-in for the Distributed Hydrological Model GEOtop
Methods for Handling and Analyzing Time Series of Satellite
Images
Google Encoded Polyline Algorithm Format
Generalized Efficient Regression-Based Imputation with Latent
Processes
Indices and Graphics for Assess Seed Germination Process
Seed Germination Indices and Curve Fitting
Generalized Structured Component Analysis (GSCA)
Reproducible Data Retrieval from the GESIS Data Archive
Hierarchical GxE Interactions in a Regularized Regression Model
Tools for Making and Combining Functions
Generalised Survival Trial Assessment Tool Environment
General Purpose G-Estimation for End of Study or Time-Varying
Outcomes
Fetching Tabular Data "Onload" in Compiled R Markdown HTML
Documents
Imports Datasets from BCB (Central Bank of Brazil) using Its
Official API
Reading Annual Financial Reports from Bovespa's DFP, FRE and FCA
System
Reading Annual and Quarterly Financial Reports from B3
Translating Coding Statements using get() and eval() for
Improved Run-Time Coding Efficiency
Reading FRE Corporate Data of Public Traded Companies from B3
Access to Ethereum-Based Blockchains Through Geth Nodes
Get Landsat 8 Data from Amazon Public Data Sets
Import and Process Data from the 'Lattes' Curriculum Platform
Reading Bibliometric Data from Lattes Platform
Get Meteorological Data for Hydrologic Models
Quantifying Systematic Heterogeneity in Meta-Analysis
Parsing Command-Line Arguments and Simple Variable Interpolation
Fast and Cached Import of Data from 'Quandl' Using the 'json
API'
GetR: Calculate Guttman error trees in R
General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
SPRE Statistics for Exploring Heterogeneity in Meta-Analysis
Get Data for Brazilian Bonds (Tesouro Direto)
Joint Test of Gene and GxE Interactions via Varying Coefficients
GEV Conditional Density Estimation Network
A visual, intuitive, easy to use software giving access to a new
type of information buried into your microarray data
Tools for Working with Hansen et al. Global Forest Change
Dataset
Tests for Survival Data in General Factorial Designs
Gross Flows Estimation under Complex Surveys
Generalized Fiducial Inference for Extremes
Generalized Fiducial Inference for Normal Linear Mixed Models
Generalized Fiducial Inference for Binary Logistic Regression
Models
Generalized Fisher's Combination Tests Under Dependence
Generalized Fiducial Inference for Ultrahigh-Dimensional
Regression
Offline 'Google' Fonts for 'Markdown' and 'Shiny'
Graph-Constrained Functional Pruning Optimal Partitioning
Extra Coordinate Systems, 'Geoms', Statistical Transformations,
Scales and Fonts for 'ggplot2'
Categorical Scatter (Violin Point) Plots
Mini Bubble Plots for Comparison of Discrete Data with 'ggplot2'
Shorten the Distance from Data Visualization Idea to Actual Plot
Gabriel Graph Based Large-Margin Classifiers
Implementation of Plots from Cleveland's Visualizing Data Book
Simpler Appearance Modification of 'ggplot2'
Visualization of a Correlation Matrix using 'ggplot2'
Analyze and Create Elegant Directed Acyclic Graphs
'ggplot2' Extension for Seasonal and Trading Day Adjustment with
'RJDemetra'
Create Dendrograms and Tree Diagrams Using 'ggplot2'
Visualizations of Distributions and Uncertainty
Interactive 'ggplot2' Layer and Theme Aesthetic Editor
Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Visualization Tools for Genealogical Data
Visualisation of High-Throughput Behavioural (i.e. Ethomics)
Data
Add Marginal Histograms to 'ggplot2', and More 'ggplot2'
Enhancements
Summarise a Distribution Through Coloured Intervals
Scales that Focus Specific Levels in your ggplot()
Formula Interface to the Grammar of Graphics
Data Visualization Tools for Statistical Analysis Results
Streamlined Creation of Segments on the Y-Axis of 'ggplot2'
Plots
Capture the Spirit of Your 'ggplot2' Calls
Create a Half Normal Plot Using 'ggplot2'
Compose Half-Half Plots Using Your Favourite Geoms
A Fast 'ggplot2'-Based Implementation of Hilbert Curves
Graphics Layers for Plotting Image Data with 'ggplot2'
Visualise the Results of Inferential Statistics using 'ggplot2'
Explore the Innards of 'ggplot2' Objects
Data Visualization for IP Addresses and Networks
Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'
Group Lasso Penalized Learning Using a Unified BMD Algorithm
Grammar of Graphics for Linear Model Diagnostic Plots
Plotting Lorenz Curve with the Blessing of 'ggplot2'
Graphical Markov Models with Mixed Graphs
Plot Columns of Two Matrices Against Each Other Using 'ggplot2'
Tools for Analyzing MCMC Simulations from Bayesian Inference
Variable Selection in Linear Mixed Models for SNP Data
Gaussian Graphical Models with Nonconvex Regularization
Extract and Visualize Motif Information from MEME Software
Gaussian Graphical Models Using Ridge Penalty Followed by
Thresholding and Reestimation
Create Muller Plots of Evolutionary Dynamics
Geometries to Plot Networks with 'ggplot2'
Multiple Fill and Colour Scales in 'ggplot2'
A 'ggplot2' Extension to Make Normal Violin Plots
'Okabe-Ito' Scales for 'ggplot2' and 'ggraph'
A 'ggplot2' and 'gganimate' Version of Pac-Man
Variations of Parallel Coordinate Plots for Categorical Data
'ggplot' Visualizations for the 'partykit' Package
Easy Plotting of Periodic Data with 'ggplot2'
Multiple Summary Statistics for Binned Stats/Geometries
Create Elegant Data Visualisations Using the Grammar of Graphics
'RStudio' Addin for Teaching and Learning 'ggplot2'
Create Ggplots via a Graphical User Interface
Convert Plot to 'grob' or 'ggplot' Object
Extra Convenience Functions for 'Plotly'
'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME
Models
A Cross Between a 2D Density Plot and a Scatter Plot
Visualizing Social Science Data with 'ggplot2'
Dots and Their Connections in Polar Coordinate System
Polygons with Holes for the Grammar of Graphics
A 'ggplot2' Extension Inspired by 'GraphPad Prism'
Annotate Statistical Tests for 'ggplot2'
Compare Big Datasets to the Uniform Distribution
Quickly Explore Your Data Using 'ggplot2' and 'table1' Summary
Tables
An Implementation of Grammar of Graphics for Graphs and Networks
Allows Interactive Visualization of Data Through a Web Browser
GUI
Gaussian-Based Genome Representative Selector with
Prioritization
Automatically Position Non-Overlapping Text Labels with
'ggplot2'
Panels and Interactive Versions of Diagnostic Plots using
'ggplot2'
Scientific Journal and Sci-Fi Themed Color Palettes for
'ggplot2'
'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
Tri-Surface Mesh Plots for Brain Atlases
A 'ggplot2' Extension for Drawing Publication-Ready Sequence
Logos
North Symbols and Scale Bars for Maps Created with 'ggplot2' or
'ggmap'
A 'ggplot2'-Plot of Composition of Solvency II SCR: SF and IM
New Data Visualisations for SOMs Networks
Extensions to 'ggplot2' for Radiation Spectra
Multiple Geometric Shape Point Layer for 'ggplot2'
'ggplot2' Based Plots with Statistical Details
Continuous Confidence Interval Plots using t-Distribution
Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects
An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Improved Text Rendering Support for 'ggplot2'
Extra Themes, Scales and Geoms for 'ggplot2'
Post-Process 'ggplot2' Plots with 'TikZ' Code Using Plot
Coordinates
Combination Matrix Axis for 'ggplot2' to Create 'UpSet' Plots
Voronoi Diagrams and Heatmaps with 'ggplot2'
A Natural Language Interface to 'ggplot2'
Quantifying Evolution and Selection on Complex Traits
Functional Conditional Independence Testing with the GHCM
Provides a Lightweight Interface for 'GitHub' through R
Missing Data Segments Imputation in Multivariate Streams
The Knockoff Inference Using Summary Statistics
Graphical Horseshoe MCMC Sampler Using Data Augmented Block
Gibbs Sampler
Generalized Hyperbolic Distribution and Its Special Cases
Fit and Simulate Generalised Hypergeometric Ensembles of Graphs
Naive Gibbs Sampling with Metropolis Steps
Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
A General Iterative Clustering Algorithm
Multivariate Analysis with Optimal Scaling
Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information
GIFT Questions Format Generator from Dataframes
Take Shell Commands and Turn Them into R Functions
Group Inverse-Gamma Gamma Shrinkage for Sparse Regression with
Grouping Structure
Random Variate Generator for the GIG Distribution
Gillespie's Stochastic Simulation Algorithm (SSA)
Gillespie's Stochastic Simulation Algorithm for Impatient People
Group Iterative Multiple Model Estimation
Supplemental Tools for the 'gimme' R Package
A New Gini Correlation Between Quantitative and Qualitative
Variables
Computing the Gini-Based Coefficients for Weighted and Negative
Attributes
Generalized Iterative Proportional Fitting for Relational Models
Download Map Data from GISCO API - Eurostat
Store and Retrieve Data.frames in a Git Repository
Turn Your Git Commit Messages into a HTML Book
'Rstudio' Addin for Version Control and Assignment Management
using Git
A Helpful Way to Install R Packages Hosted on GitHub
Create Useful .gitignore Files for your Project
Add 'Git' Links to Your Web Based Assets
A Generalized Joint Location and Scale Framework for Association
Testing
g-and-k and g-and-h Distribution Functions
Gaines and Kuklinski (2011) Estimators for Hybrid Experiments
Accessing the Official 'Google Knowledge Graph' API
Penalization in Large Scale Generalized Linear Array Models
Generate tables and plots to get summaries of data
Generalized Linear Autoregressive Moving Average Models
Variable Selection in Sparse GLARMA Models
Graphical Lasso: Estimation of Gaussian Graphical Models
General Linear Ballistic Accumulator Models
An R Package for Multiple-Group Latent Class Analysis
Calculate Textures from Grey-Level Co-Occurrence Matrices
(GLCMs)
Estimation and Use of the Generalised (Tukey) Lambda
Distribution
Fitting Single and Mixture of Generalised Lambda Distributions
(RS and FMKL) using Various Methods
Fit GLD Regression Model and GLD Quantile Regression Model to
Empirical Data
Global and Individual Tests for Direct Effects
Learning Interactions via Hierarchical Group-Lasso
Regularization
Phylogenetic Comparative Methods with Uncertainty Estimates
Generalized Linear Latent Variable Models
'C' and 'Java' Source Code Generator for Fitted Glm Objects
Predicted Values and Discrete Changes for GLM
An Adaptive Test on High Dimensional Parameters in Generalized
Linear Models
All Hierarchical or Graphical Models for Generalized Linear
Model
Fitting Generalized Linear Models Subject to Constraints
Generalized Linear Models for Categorical Responses
Discretization and Grouping for Logistic Regression
GLRT P-Values in Generalized Linear Models
Fit GLM with LEP-Based Penalized Maximum Likelihood
Generalized Linear Mixed Models via Monte Carlo Likelihood
Approximation
Generalized Linear Mixed Models using Adaptive Gaussian
Quadrature
Generalized Linear Mixed Model Analysis via Expectation
Propagation
Generalized Linear Mixed Models with Robust Random Fields for
Spatiotemporal Modeling
Variable Selection for Generalized Linear Mixed Models by
L1-Penalized Estimation
Generalized Linear Models with Clustering
Generalized Linear Mixed Model (GLMM) for Binary Randomized
Response Data
General Linear Mixed Models for Gene-Level Differential
Expression
Generalized Linear Mixed Models using Template Model Builder
Lasso and Elastic-Net Regularized Generalized Linear Models
Fit a Penalized Constrained Continuation Ratio Model for
Predicting an Ordinal Response
Add Nonparametric Bootstrap SE to 'glmnet' for Selected
Coefficients (No Shrinkage)
Data and Code to Accompany Generalized Linear Models, 2nd
Edition
L1 Regularization Path for Generalized Linear Models and Cox
Proportional Hazards Model
Fit a Penalized Continuation Ratio Model for Predicting an
Ordinal Response
Dimension Reduction of Non-Normally Distributed Data
Creates Ideal Data for Generalized Linear Models
Generalized Linear Models with Truncated Lasso Penalty
Set of Tools to Data Analysis using Generalized Linear Models
Transfer Learning with Regularized Generalized Linear Models
Model Selection and Multimodel Inference Made Easy
Variable Selection Deviation Measures and Instability Tests for
High-Dimensional Generalized Linear Models
Bi-Level Optimization of Metabolic Network Models
Global Gene-Set Analysis for Association Studies
Inhomogeneous K- And Pair Correlation Functions Using Global
Estimators
Generate Functions to Get or Set Global Options
Objective functions for benchmarking the performance of global
optimization algorithms
Identify Global Objects in R Expressions
Plot 2D and 3D Views of the Earth, Including Major Coastline
Fitting and Testing Generalized Logistic Distributions
Generalized Logrank Tests for Interval-censored Failure Time
Data
Genome-Wide Association and Linkage Analysis under Heterogeneity
Generalized Least Squares with Measurement Error
Glucose Variability Measures from Continuous Glucose Monitoring
Data
Methods to Assess Generalized Latent Variable Model Fit
Generate Music Easily and Show Them Anywhere
Genomic Mediation Analysis with Adaptive Confounding Adjustment
Distance and Travel Time Between Two Points from Google Maps
Simulation of Graphical Correlation Matrices
Fast Estimation of Gaussian Mixture Copula Models
Graph Based Multiple Comparison Procedures
Accessing a Geometallurgical Database with R
Short Term Forecasting via GMDH-Type Neural Network Algorithms
Binary Classification via GMDH-Type Neural Network Algorithms
Geometric Median, k-Medians Clustering and Robust Median PCA
Meta-Analysis via a Unified Framework of Confidence Distribution
Inference and Clustering of Functional Data
Gaussian Mixture Graphical Model Learning and Inference
Descriptive Statistics, Transition Plots, and More
Unsupervised Gaussian Mixture and Minkowski and Spherical
K-Means with Constraints
Generalized Method of Moments and Generalized Empirical
Likelihood
Generalized Linear Mixed Model Association Tests
Likelihood-Based Boosting for Generalized Mixed Models
Multinomial Logit Models with Random Parameters
Various R Programming Tools for Model Fitting
Tools for 2D and 3D Plots of Single and Multi-Objective
Linear/Integer Programming Models
Generalised Management Strategy Evaluation Simulator
Generalized Mass Spectrum Missing Peaks Abundance Imputation
Interface Between GMT Map-Making Software and R
Estimate Gaussian or Student's t Mixture Vector Autoregressive
Model
Methods for Fitting Network Time Series Models
Computation of Generalized Nash Equilibria
Goodness of Fit Test for Continuous Distribution Functions
Estimate Natural Mortality for Different Life Stages
Access the 'Geographic Name Resolution Service'
Read Data from Files Readable by 'gnumeric'
Comprehensive GO Terms Comparison Between Species
Functions for Community Data and Ordinations
Fast DocumentTermMatrix and TermDocumentMatrix Creation
Goodness-of-Fit Methods for Right-Censored Data
Goodness-of-Fit Tests for Functional Data
Goodness-of-Fit Tests for the Gamma Distribution
Testing Goodness-of-Fit with the Kernel Density Estimator
Khmaladze Martingale Transformation Goodness-of-Fit Test
Interactive Document for Working with Goodness of Fit Analysis
Tests of Fit for some Probability Distributions
Classical Goodness-of-Fit Tests for Univariate Distributions
Generalized Orthogonal GARCH (GO-GARCH) models
Gene Ontology Label Discernment and Identification
Goldilocks Adaptive Trial Designs for Time-to-Event Endpoints
A Framework for Robust Shiny Applications
Animate Text using the 'Animate.css' Library
Association Analysis for Categorical Variables
R Scripts in the Google Cloud via Cloud Run, Cloud Build and
Cloud Scheduler
Access to the 'Google Cloud Vision' API for Image Recognition,
OCR and Labeling
Collect Data Programmatically by POST Methods to Google Forms
Create Array Data from 2D Image Thumbnails via Google Image
Search
Retrieve Information from 'Google Knowledge Graph' API
Call Google's 'Natural Language' API, 'Cloud Translation' API,
'Cloud Speech' API and 'Cloud Text-to-Speech' API
An Interface to Google's Cloud Natural Language API
Encoding Coordinates into 'Google' Polylines
Working with Google's 'Public Data Explorer' DSPL Metadata Files
R Interface for Google 'Cloud Pub/Sub' REST API
Access Google Sheets using the Sheets API V4
Access the 'Google Tag Manager' API using R
Accesses Google Maps APIs to Retrieve Data and Plot Maps
Visualization of Functional Analysis Data
Fit Generalized Odds Rate Mixture Cure Model with Interval
Censored Data
Evaluation of Inequality Constrained Hypotheses Using GORICA
Scroll Back to Top Icon in 'rmarkdown' and 'shiny'
functions to get public survey data in Japan
Structural Exploration of the Gene Ontology (GO) Knowledge Base
Gaussian Processes for Pareto Front Estimation and Optimization
Tools for Gaussian Process Modeling in Uncertainty
Quantification
Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Comprehensive Statistical Analysis of Plant Breeding Experiments
Differential Item Functioning in Generalized Partial Credit
Models
Bootstrap goodness-of-fit test for the generalized Pareto
distribution
Gaussian Process for Functional Data Analysis
Fast Gaussian Process Computation Using Vecchia's Approximation
Quantifying Group Performance in Individual Competitions
Convert Chip ID of the GPL2015 into GeneBank Accession and
ENTREZID
Implementation for the Most Common Gaussian Process Models
Generalized Partial Linear Models (GPLM)
Various R Programming Tools for Plotting Data
Generalized Partially Linear Tree-Based Regression Model
Gaussian Process Modeling of Multi-Response and Possibly Noisy
Datasets
Analysing and Plotting Genotype-Phenotype Maps
Lyapunov Exponents and Kaplan-Yorke Dimension
Gaussian Process Ranking of Multiple Time Series
Gaussian Process Regression for Mortality Rates
Generalized Propensity Score Cumulative Distribution Function
Sequential Clustering Algorithm for Location Data
Maximum Likelihood Estimation of Multiple Membership Mixed
Models Used in Value-Added Modeling
Process GPX Files into R Data Structures
Prediction of G Quadruplexes and Other Non-B DNA Motifs
Probability of Detection for Grab Sample Selection
Graph-Constrained Estimation and Hypothesis Tests
Helps Grade Assignment Submissions that are R Scripts
Interactive Color Gradient Picker Using 'htmlwidgets' and the
Modified JS Script 'jquery-gradient-picker'
Moving-Window and Direct Data Aggregation
Landscape Connectivity, Habitat, and Protected Area Networks
Creating Continuously Integrated Package Repositories from
Manifests
Inference on Granger-Causality in the Frequency Domain
Graphical Analysis of Variance Using ggplot2
Gene-Ranking Analysis of Pathway Expression
Collection of Shiny Apps for Agricultural Research Data Analysis
A Wrapper of the JavaScript Library 'vis-graph3d'
Build Graphs for Landscape Genetics Analysis
A Multi-Platform GUI for Drawing Customizable Graphs in R
An R Interface to the 'GraphHopper' Directions API
Statistical Methodology for Graphical Extreme Value Models
Graphical VAR for Experience Sampling Data
Additional Layout Algorithms for Network Visualizations
A Collection of Graphon Estimation Methods
Simulate Expression Data from 'igraph' Networks
Graceful 'ggplot'-Based Graphics and Other Functions for GAMs
Fitted Using 'mgcv'
Generating Time Series with Diverse and Controllable
Characteristics
Explore Probability Distributions for Bivariate Temporal
Granularities
Inference in Graphical Gaussian Models with Edge and Vertex
Symmetries
Parameter Inference and Optimal Designs for Grouped and/or
Right-Censored Count Data
Gradient-Based Recognition of Spatial Patterns in Environmental
Data
Clustering and Model Selection with the Integrated
Classification Likelihood
Routines for Writing Greek Letters and Mathematical Symbols on
the 'RStudio' and 'RGui'
Sensitivities of Prices of Financial Options
Combine Categories Using Greenacre's Method
Estimation of Tail Dependence in Graphical Models
Mixed-Effects REML Incorporating Generalized Inverses
Adaptive Group-Regularized Logistic Elastic Net Regression
Simple and Scalable Statistical Modelling in R
Generalized Path Analysis for Social Networks
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
Toolbox for Model Building and Forecasting
Fit a Grey-Zone Model with Survival Data
Miscellaneous Functions for "Grid" Graphics
Redraw Base Graphics Using 'grid' Graphics
Cluster-Preserving Multivariate Joint Grid Discretization
A Simulation Tool to Determine the Required Sample Size for
Repertory Grid Studies
Improved Text Rendering Support for 'Grid' Graphics
Calculate Optical Parameters from Spindle Stage Measurements
Bayesian Inference for A|B and Bandit Marketing Tests
Genetic-Relationship-Matrix Structural Equation Modelling
(GRMSEM)
General Regression Neural Networks Package
Creating Flexible, Reproducible 'PDF' Reports
Generalized Regression on Orthogonal Components
Gromov-Hausdorff Type Distances for Labeled Metric Spaces
The Simplest Solution to Version-Control for CRAN Packages
Inferring Group Bayesian Networks using Hierarchical Feature
Clustering
Regression Analysis of Grouped and Coarse Data
Efficient Estimation of Grouped Survival Models
Independent Component Analysis for Grouped Data
Regularized Multivariate Regression for Identifying Master
Predictors Using the GroupRemMap Penalty
A GUI-Based Program to Compute Probabilities Regarding Group
Sequential Designs
Multiple Testing Procedure for Grouped Hypotheses
Simulating and Modeling Group (Pooled) Testing Data
Grouped Weighted Quantile Sum Regression
Wavelet Functional ANOVA Through Markov Groves
Bayesian Non-Parametric Dependent Models for Time-Indexed
Functional Data
Multivariate Normal and Elliptically-Contoured Repeated
Measurements Models
Simple Metrics to Summarize Growth Curves
Plotting, Smoothing and Growth Trait Extraction for Longitudinal
Data
Bayesian reconstruction of growth velocity
Estimate Growth Rates from Experimental Data
Penalized Cox Model for High-Dimensional Data with Grouped
Predictors
Fitting User-Specified Models with Group Lasso Penalty
Standardization for Group Lasso Models with Categorical
Predictors
Regularization Paths for Regression Models with Grouped
Covariates
Group Sequential Analysis of Clinical Trials
Patterns and Statistical Differences Between Two Groups of
Strings
Goodness-of-Fit Tests in High-Dimensional GLMs
Alternative Implementations of Base R Functions
GRS Test for Portfolio Efficiency, Its Statistical Power
Analysis, and Optimal Significance Level Calculation
Tools for the Analysis of Gutenberg-Richter Distributions of
Earthquake Magnitudes
Gene Set Analysis with Fisher Combined Method
Gene Set Analysis using the Gamma Method
Two Functions for Generalized SARIMA Time Series Simulation
Estimate Parameters in the Generalized SBM
Generalized Structure Component Analysis- Latent Class Analysis
& Latent Class Regression
Group Sequential Designs with Negative Binomial Outcomes
Robust Estimation in the Presence of Cellwise and Casewise
Contamination and Missing Data
Semi-Supervised Generalized Structural Equation Modeling
Group Sequential Design in Equivalence Studies
Download Google Sheets Using Just the URL
High Efficient Functions to Decode NFL Player IDs
Global Sea Level and Oxygen Isotope Data
Global Surface Summary of the Day ('GSOD') Weather Data Client
Group Sequential Refined Secondary Boundary
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Graph-Based Sequential Change-Point Detection for Streaming Data
Utilities for Strings and Function Arguments
Estimation of the Generalized Symmetry Point, an Optimal
Cutpoint in Continuous Diagnostic Tests
Easily Create Presentation-Ready Display Tables
Generalizability Theory for Information Retrieval Evaluation
Calculate efficiencies of group testing algorithms with
correlated responses
Converting Transport Data from GTFS Format to GPS-Like Records
Read and Write General Transit Feed Specification (GTFS) Files
Routing with GTFS (General Transit Feed Specification) Data
General Transit Feed Specification (GTFS) Editing and Analysing
Tools
Game-Theoretically OPtimal (GTOP) Reconciliation Method
Perform and Display Google Trends Queries
Presentation-Ready Data Summary and Analytic Result Tables
Genome and Transcriptome Wide Association Study
Nombres Inscritos en Chile (1920 - 2020)
Access 'The Guardian' Newspaper Open Data API
Maps, Data and Methods Related to Guerry (1833) "Moral
Statistics of France"
Adjust Estimates of Learning for Guessing
Implementation of Sampling Formulas for the Unified Neutral
Model of Biodiversity and Biogeography, with or without Guild
Structure
Bootstrap Analyses of Sampling Uncertainty in Goodness-of-Fit
Statistics
Generalized UniFrac Distances, Distance-Based Multivariate
Methods and Feature-Based Univariate Methods for Microbiome
Data Analysis
Statistical Analysis of Monthly Background Checks of Gun
Purchases
A User-Oriented Statistical Toolkit for Analytical Variance
Estimation
Download and Process Public Domain Works from Project Gutenberg
Perform Global Vector Autoregression Estimation and Inference
Regularized Categorical Effects/Categorical Effect
Modifiers/Continuous/Smooth Effects in GLMs
Global Validation of Linear Models Assumptions
Manhattan, Q-Q, and PCA Plots using 'ggplot2'
Identifying Significant SNPs in Genome Wide Association Studies
(GWAS) via Clustering
Exact Hardy-Weinburg testing for Genome Wide Association Studies
Nonlocal Prior Based Iterative SNP Selection Tool for
Genome-Wide Association Studies
Comprehensive and Easy to Use Quality Control of GWAS Results
'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog
A Shiny App to Aid Interpretation of Geometrically-Weighted
Degree Estimates in Exponential Random Graph Models
Controlling the genome-wide type I error rate in association
mapping experiments
Multi-Site Stochastic Models for Daily Precipitation and
Temperature
Calculation of probabilities for inadequate and excessive
gestational weight gain
Count and Continuous Generalized Variability Indexes
Rewrite of gWidgets API for Simplified GUI Construction
Toolkit Implementation of gWidgets2 for tcltk
Geographically Weighted Logistic Elastic Net Regression
Geographically Weighted Non-Negative Principal Components
Analysis
Geographically Weighted Partial Correlation Coefficient
Geographically Weighted Partial Correlation Mapper
Generalized Weighted Quantile Sum Regression
Generalized Waring Regression Model for Count Data
Fits geographically weighted regression models with diagnostic
tools
GroundWater Spatiotemporal Data Analysis Tool (GWSDAT)
Estimating Genome-Wide Significance for Whole Genome Sequencing
Studies, Either Single SNP Tests or Region-Based Tests
Run GWAS/GWEIS Scans Using Binary Dosage Files
Maximum Likelihood Estimation for Gene-by-Measured Environment
Interaction Models
R Interface for the 'H2O' Scalable Machine Learning Platform
Sample Size Calculation in Hierarchical 2x2 Factorial Trials
Software to perform Haar Fisz transforms
Estimation, Simulation and Visualization of Hierarchical
Archimedean Copulae (HAC)
Wrapper for the 'Official Hacker News' API
Additional Tools for Splitting and Cleaning Data
A Tidy Framework to Hack Gene Expression Signatures
Iterative Extrapolation of Species' Haplotype Accumulation
Curves for Genetic Diversity Assessment
Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass
Spectrometry Data
Utilities for using R scripts in Hadoop streaming
Analysis Framework for Monte Carlo Simulation Data in Physics
Analysis of Plant Pathogen Pathotype Complexities, Distributions
and Diversity
Authenticated HTTP Request Client for the 'Hakai' API
Hierarchical Optimal Matching and Machine Learning Toolbox
Provides Easy Downloading Capabilities for the UK Parliament API
Inference of Trait Associations with SNP Haplotypes and Other
Attributes using the EM Algorithm
Inference of Chromosome-Length Haplotypes Using Genomic Data of
Single Gamete Cells
Analyzing Case-Parent Triad and/or Case-Control Data with SNP
Haplotypes
Statistical Analysis of Haplotypes with Traits and Covariates
when Linkage Phase is Ambiguous
Tool for Clustering Genotypes in Haplotypes
Manipulating DNA Sequences and Estimating Unambiguous Haplotype
Network with Statistical Parsimony
Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Harmonic Mean p-Values and Model Averaging by Mean Maximum
Likelihood
Harmonic Regression to One or more Time Series
Fast, Sensitive, and Accurate Integration of Single Cell Data
Wrangle Phylogenetic Distance Matrices and Other Utilities
Palettes Generated from All "Harry Potter" Movies
Full Feature Implementation of Hash/Associated
Arrays/Dictionaries
Generate Short Unique YouTube-Like IDs (Hashes) from Integers
Import and Export 'SPSS', 'Stata' and 'SAS' Files
Hawkes process simulation and calibration toolkit
Estimation of Hawkes Processes from Binned Observations
Conditional Treatment Effect for Competing Risks
Identifying Foggy and Cloudy Images by Quantifying Haziness
Damage functions from FEMA's HAZUS software for use in modeling
financial losses from natural disasters
Hierarchical Bayesian Modeling of Decision-Making Tasks
Hierarchical Bayesian Benefit-Risk Assessment Using Discrete
Choice Experiment
Hierarchical Bayesian Regression for GLMs
Hill/Bliss Independence Model for Combination Vaccines
Hierarchical Bayesian Analysis of Recognition Memory
Hierarchical Bayesian Small Area Estimation
Hierarchical Bayesian Space-Time models for Gaussian space-time
data
Interval estimation for the parameters of linear models with
heteroskedasticity (Wild Bootstrap)
Hierarchical Community Detection by Recursive Partitioning
Regression with a Large Number of Potential Explanatory
Variables
Change Point Estimation for Regression with Heteroscedastic Data
Causal Discovery from Discrete Data using Hidden Compact
Representation
Using Historical Controls for Designing Phase II Clinical Trials
Change-Point Analysis of High-Dimensional Time Series via Binary
Segmentation
High Dimensional Bayesian Ridge Regression without MCMC
High Dimensional Confidence Interval Based on Lasso and
Bootstrap
High Dimensional Supervised Classification and Clustering
Clustering High Dimensional Data with Hidden Markov Model on
Variable Blocks
Detect Change Points in Means of High Dimensional Data
Easy Manipulation of Out of Memory Data Sets
Sample Size Calculation for High Dimensional Classification
Study
Use Known Groups in High-Dimensional Data to Derive Scores for
Plots
Interface to the 'HDF5' Binary Data Format
Tests for High Dimensional Generalized Linear Models
Statistical Inference for Noisy Vector Autoregression
Distribution-Free Exact High Dimensional Low Sample Size
k-Sample Tests
Statistical Analysis Tools for High Dimension Molecular Data
(HDMD)
High-Dimensional Regression with Measurement Error
A Multiple Testing Procedure for High-Dimensional Mediation
Hypotheses
Benchmarking and Visualization Toolkit for Penalized Cox Models
Leland Wilkinson's Algorithm for Detecting Multidimensional
Outliers
Principal Component Analysis in High-Dimensional Data
Highest Density Regions and Conditional Density Estimation
Multivariate and Functional Spatial Scan Statistics
High Dimensional Hypothesis Testing for Mean Vectors, Covariance
Matrices, and White Noise of Vector Time Series
High Dimensional Time Series Analysis Tools
The Lasso for the Tweedie's Compound Poisson Model Using an
IRLS-BMD Algorithm
Financial Projections and Planning for Health Care Practices
The Machine Learning and AI Modeling Companion to 'healthyR'
The Time Series Modeling Companion to 'healthyR'
Easily Install and Load the 'healthyverse'
Easily Download Heaps of PDF and CSV Files
Heat exchange calculations during physical activity
Fit Statistic for Binary Dependent Variable Models
Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
Robust Estimation Using Heavy-Tailed Distributions
Fit Normal or Student-t Heckman Selection Models
Markov Models for Health Economic Evaluations
Decode and Validate HEIMS Data from Department of Education,
Australia
Preprocess Data and Get Better Insights from Machine Learning
Models
Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()'
and 'as.data.frame()'
Access London Natural History Museum Host-Helminth Record
Database
Tools for Environmental Analyses, Ecotoxicology and Various R
Functions
Hierarchical Ensemble Methods for Directed Acyclic Graphs
Visualizing Hypothesis Tests in Multivariate Linear Models
'sf'-Based Interface to the 'HERE' REST APIs
Hierarchical Exponential-Family Random Graph Models
Marker-Based Estimation of Heritability Using Individual Plant
or Plot Data
Heritability of Gene Expression for Next-Generation Sequencing
Efficient Sequential and Batch Estimation of Univariate and
Bivariate Probability Density Functions and Cumulative
Distribution Functions along with Quantiles (Univariate) and
Spearman's Correlation (Bivariate)
Health Economic Simulation Modeling and Decision Analysis
Test of No Main and/or Interaction Effects in Functional Data
Gaussian Graphical Model-Based Heterogeneity Analysis
Heteroskedastic Gaussian Process Modeling and Design under
Replication
MLE and Bayesian Estimation of Heteroskedastic Ordered Probit
(HETOP) Model
Assessing Heterogeneity in the Utility of a Surrogate Marker
Heterogeneous Treatment Effects in Regression Analysis
Fisherian and Neymanian Methods for Detecting and Measuring
Treatment Effect Variation
Structural Handling of Finnish Personal Identity Numbers
Heuristics Including Take the Best and Unit-Weight Linear
Discovery of Process Models with the Heuristics Miner
Integrated Tool for Hairping Extraction of RNA Sequences
Holonomic Gradient Method and Gradient Descent
Heterogeneous Graphical Model for Non-Negative Data
Identify and Correct Invalid HGNC Human Gene Symbols and MGI
Mouse Gene Symbols
Statistical Analysis and Data Display: Heiberger and Holland
HHCART(G) - A Reflected Feature Space for CART
Heller-Heller-Gorfine Tests of Independence and Equality of
Distributions
Age-Structured Spatio-Temporal Models for Infectious Disease
Counts
Calculate and Visualize the Herfindahl-Hirschman Index
Hidden Hybrid Markov/Semi-Markov Model Fitting
The Hilbert-Huang Transform: Tools and Methods
Simulation from distributions supported by nested hyperplanes
Individual-Level, Summary-Level and Single-Step Bayesian
Regression Model
Multiple Logistic Regression for 3D Chromatin Domain Border
Analysis
The All-Configurations, Maximum-Interaction F-Test for Hidden
Additivity
Functions to Perform Hierarchical Analysis of Distance Sampling
Data
Set Data Visualization Using Hierarchies
Partitioning Hierarchical Diversity and Differentiation Across
Metrics and Scales, from Genes to Ecosystems
Estimation and Tests of Hierarchical F-Statistics
Hierarchical Clustering-Based Portfolio Allocation Strategies
Convex Hierarchical Testing of Interactions
Two-Sample Tests for Equality of Means in High Dimension
Testing Two-Sample Mean in High Dimension
Implementation of Voting Rules Electing the Candidate with
Highest Median Grade
Two-Sample Tests for High-Dimensional Mean Vectors
Feature Selection for High Dimensional Survival Data
Determining and Evaluating High-Risk Zones
High-Throughput Screening for Plate Based Essays
Simultaneous Critical Values for t-Tests in Very High Dimensions
Statistical Inference for Online Learning and Stochastic
Approximation via HiGrad
Hilbert Similarity Index for High Dimensional Data
Integral Analysis of Diversity Based on Hill Numbers
Create Hillshade Relief Maps Using Ray-Tracing
Estimation of Heritability in Linear Mixed Models
High Mach Finds Routes for Supersonic Aircraft
Simulating the Development of h-Index Values
H-Index Calculator using Data from a Web of Science (WoS)
Citation Report
Tools for hypothesis testing based on Hypergeometric
Intersection distributions
Parentage Assignment using Bi-Allelic Genetic Markers
Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data
Hierarchical Item Response Theory Models
Summary Statistics for Histogram/Count Data
Data Sets from the History of Statistics and Data Visualization
Construction of Regular and Irregular Histograms with Different
Options for Automatic Choice of Bins
Enhanced Command History Tracking for R Sessions and Dynamic
Documents
"Hit and Run" and "Shake and Bake" for Sampling Uniformly from
Convex Shapes
HIV calibrated model life tables for countries with generalized
HIV epidemics
Hierarchical Joint Analysis of Marginal Summary Statistics
Conversion Tools for HK80 Geographical Coordinate System
Ensemble Clustering using K Means and Hierarchical Clustering
Spatial Extreme Value Analysis with the Hierarchical Model of
Reich and Shaby (2012)
API to Retrieve Data from Hong Kong Stock Exchange
Diagnostic Tools for Hierarchical (Multilevel) Linear Models
Fit Statistical Models Using Hamiltonian Monte Carlo
Read Human Mortality Database and Human Fertility Database Data
from the Web
The H-Measure and Other Scalar Classification Performance
Metrics
High-Dimensional Mixed Graphical Models Estimation
Hidden Markov Models with Discrete Non-Parametric Observation
Distributions
Constructs Asymmetric Hidden Markov Models
Hidden Markov Model for Continuous Observations Processes
Markov Regime Switching Copula Models Estimation and Goodness of
Fit
A Fast Solver for Henderson Mixed Model Equation via Row
Operations
Determine the Number of States in Hidden Markov Models via
Marginal Likelihood
Analysing Accelerometer Data Using Hidden Markov Models
"Mixture and Hidden Markov Models with R" Datasets and Example
Code
Hypothesis Testing and Power Calculations for Comparing
Metagenomic Samples from HMP
Statistical Object Oriented Data Analysis of RDP-Based Taxonomic
Trees from Human Microbiome Data
Flux Estimation with Static Chamber Data
Hierarchical Model of Species Communities
Group Association Test using a Hidden Markov Model
Half-Normal Plots with Simulation Envelopes
Collect and Retrieve Annotation Data for Various Genomic Data
Using Different Webservices
Download and Visualize Essential Climate Change Data
Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
Statistics for Holland's Theory of Vocational Choice
A Tidy Interface for Simulating Multivariate Data
Methods for Closed Testing with Simes Inequality, in Particular
Hommel's Method
Quick Access to Homologene and Gene Annotation Updates
Homogeneity tests for Regional Frequency Analysis
Functions to Access Men's Basketball Play by Play Data
Transmissions and Receptions in a Hop by Hop Network
Hierarchical Ordered Probit Models with Application to Reporting
Heterogeneity
Supplemental Functions and Datasets for "Handbook of Regression
Methods"
Horn's (1965) Test to Determine the Number of Components/Factors
Flexible Non-Linear Regression with the HorseRule Algorithm
Nonlinear Regression using Horseshoe Prior
Simulate the Extent of Host Switching by Consumers
Hotelling T-Square and Confidence Ellipse
CSS Animations for 'shiny' Button Elements
A lower bound for the number of correct rejections
Heligman Pollard mortality model parameter estimation using
Bayesian Melding with Incremental Mixture Importance Sampling
High Performance Cluster Models Based on Kiefer-Wolfowitz
Recursion
High-Probability Lower Bounds for the Total Variance Distance
Miscellaneous convenience functions and dataset
Regularization Paths for Lasso or Elastic-Net Penalized Huber
Loss Regression and Quantile Regression
Toolkit for Data Analytics in Human Resources
Additional Themes, Theme Components and Utilities for 'ggplot2'
Nonparametric Assessment Between Competing Risks Hazard Ratios
Hazard Ratio Estimation using Cox Model Weighted by the
Estimated Propensity Score
High-Resolution Melting (HRM) Curve Analysis
Group Variable Selection for Quantile and Robust Mean Regression
Datasets, Functions and Scripts for Semiparametric Regression
Supporting Harezlak, Ruppert & Wand (2018)
Homogenous Segmentation for Spatial Lines Data
A Handbook of Statistical Analyses Using R (1st Edition)
A Handbook of Statistical Analyses Using R (2nd Edition)
A Handbook of Statistical Analyses Using R (3rd Edition)
Calculation of Covariance Between Markers for Half-Sib Families
Manage, Analyse and Simulate Hyperspectral Data
Homogeneity and Sparsity Detection Incorporating Prior
Constraint Information
Hierarchical Bayesian Species Distribution Models
Canonical Correlation Analysis based on Kernel Independence
Measures
A Path-Based BCD for Proximal Function of Latent Group Lasso
Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data
Hidden Smooth Polynomial Regression for Rupture Detection
Estimation of Recombination Rate and Maternal LD in Half-Sibs
Hierarchical Shrinkage Stan Models for Biomarker Selection
Reweighted Marginal Hypothesis Tests for Clustered Data
Bayesian Logistic Regression with Heavy-Tailed Priors
Convert 'HTML' to 'R' with a 'Shiny' App
Generates HTML Tag Strings for HTML5 Elements Included in
Mozilla's Documentation of HTML5
Simple Scraping and Tidy Webpage Summaries
Tidy Up and Test XPath Queries on HTML and XML Content
Facilitates Automated HTML Report Creation
Historical Tree Ensembles for Longitudinal Data
Clustering High-Throughput Transcriptome Sequencing (HTS) Data
High Throughput Sequencing of Stable Isotope Probing Data
Analysis
Report Errors in Web Applications with 'Problem Details' (RFC
7807)
Perform HTTP Requests and Process the Responses
Distinct Colour Palettes Based on 'iwanthue'
compute HUM value and visualize ROC curves
Calculate Water Vapor Measures from Temperature and Dew Point
High-Performance Stemmer, Tokenizer, and Spell Checker
Zero-Inflated and Hurdle Modelling Using Bayesian Inference
Explore and Map County-Level Hurricane Exposure in the United
States
Easily Create and Style Tables for LaTeX, HTML and Other Formats
Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
Models and Tests for Departure from Hardy-Weinberg Equilibrium
and Independence Between Loci
Bayesian investigation of Hardy-Weinberg Equilibrium via
estimation and testing
Objective Bayesian Testing for the Hardy-Weinberg Equilibrium
Problem
HTML Writer - Outputs R objects in HTML format
Build, Deploy and Evaluate Hybrid Ensembles
Implementation of the Hybrid Monte Carlo and Multipoint Hybrid
Monte Carlo sampling techniques
An R Package for the Stochastic Simulation of Disease Spreading
in Dynamic Networks
Function that Creates a Heat Map from Hybridization Data
Hybrid Bayesian Networks Using R and JAGS
Tools and models for hydrological applications
Extract Event Statistics in Hydrologic Time Series
Groundwater Data Presentation and Interpretation
Goodness-of-Fit Functions for Comparison of Simulated and
Observed Hydrological Time Series
Estimating Water Retention and Infiltration Model Parameters
using Experimental Data
Detect and Characterize Sub-Daily Flow Fluctuations
Particle Swarm Optimisation, with Focus on Environmental Models
Interface to the Greek National Data Bank for
Hydrometeorological Information
Hydrologic Indices for Daily Time Series Data
Hydrological Tools for Handling Hydro-Meteorological Data
Records
Hydrological Tools for Handling Hydro-Meteorological Data from
Argentina and Chile
Time Series Management, Analysis and Interpolation for
Hydrological Modelling
Generic N-Dimensional Hyperplane Fitting with Heteroscedastic
Covariant Errors and Intrinsic Scatter
Machine Learning of Hyperrectangular Gating Strategies for
High-Dimensional Cytometry
Hypergeometric Function of a Matrix Argument
Overlap Detection in n-Dimensional Space
Attribute Sampling Plan with Exact Hypergeometric Probabilities
using Chebyshev Polynomials
Hyper-Ensemble Smote Undersampled Random Forests
Work with Hyperspectral Data, i.e. Spectra + Meta Information
(Spatial, Time, Concentration, ...)
High Dimensional Geometry, Set Operations, Projection, and
Inference Using Kernel Density Estimation, Support Vector
Machines, and Convex Hulls
Macroevolutionary phylogentic analysis of species trees and gene
trees
Confidence Intervals and Tests of Statistical Hypotheses
Wrapper for the 'Hypothes.is' Web Annotation Service
Multicriteria Risk Management using Zero-Sum Games with
Vector-Valued Payoffs that are Probability Distributions
Hybrid Methods for Addressing Uncertainty in RISK Assessments
Tools for Modeling Rate-Dependent Hysteretic Processes and
Ellipses
Get Pedestrian Frequency Data from the 'Hystreet' Project
Functions to Work with 'incidence2' Objects
Plotting N-T Plane for Decision on Performing an Interim
Analysis
Data and Functions for "An Intro. to Accept. Samp. & SPC/R"
Two-Stage Adaptive Dose-Finding Clinical Trial Design
Analysis of Intra Annual Density Fluctuations
Model Selection for Index of Asymmetry Distribution
Cleaning and Visualizing Implicit Association Test (IAT) Data
Compute Effect Sizes and Reliability for Implicit Association
Test (IAT) Data
Scoring Algorithm for the Implicit Association Test (IAT)
Implicit Association Test Scores Using Robust Statistics
Integrative Bayesian Analysis of Transcriptomic and CGH Data
Functions and Datasets for the Data Science Course at IBAW
R Wrapper for Istanbul Municipality Open Data Portal
Item Based Collaborative Filtering for Multi-Trait and
Multi-Environment Data
Functions for the Analysis of IBD Haplo Output
Convert Between Different IBD-State Labelling Schemes
Regression Methods for IBD Linkage with Covariates
Simulation of Chromosomal Regions Shared by Family Members
Irregular-lattice based ensemble empirical mode decomposition
Toolkits to Develop Individual-Based Models in Infectious
Disease
Individual Based Model Population Simulation
Generate Personality Insights Sunburst Diagrams
Iboot: iterated bootstrap tests and confidence sets
Model Agnostic Instance Level Variable Attributions
R API to Interactive Brokers Trader Workstation
Inequality Constrained Inference in Linear Normal Situations
A Copy Number and Expression-Based Classifier for Breast Tumours
Inequality and Concentration Indices and Curves
Standardized high-throughput evaluation of cell-based compound
screens
Infer Community Assembly Mechanisms by Phylogenetic-Bin-Based
Null Model Analysis
In-Depth Characterization and Analysis of Mutational Signatures
('ICAMS')
Optimal Designs for Nonlinear Statistical Models by Imperialist
Competitive Algorithm (ICA)
Subsetting using Focused Identification of the Germplasm
Strategy (FIGS)
Integrative Conditional Autoregressive Horseshoe Model
Calibrates and Reweights Units in Samples
Bayesian Semiparametric Models for Interval-Censored Data
Data-Driven Design of Targeted Gene Panels for Estimating
Immunotherapy Biomarkers
Facilitating Estimation of the Intraclass Correlation
Coefficient
Calculation of Sample Size and Power for ICC
Cox Model with Interval-Censored Starting Time of a Covariate
Multilevel Model Intraclass Correlation for Slope Heterogeneity
Facilitates Clustered Binary Data Generation, and Estimation of
Intracluster Correlation Coefficient (ICC) for Binary Data
Intraclass Correlation Coefficient for Count Data
Computation of the Double-Entry Intraclass Correlation
An Ensemble Method for Interval-Censored Survival Data
International Classifcation of Diseases (ICD) Data
Metadata Processing for the German Modification of the ICD-10
Coding System
EM by the Method of Weights for Incomplete Categorical Data in
Generlized Linear Models
'ICD' Programs for Injury Categorization in R
Identification of Cancer Dysfunctional Subpathway with Omics
Data
Individual Conditional Expectation Plot Toolbox
Incremental Cost-Effectiveness Inference using Two Unbiased
Samples
Analyzing High-Throughput Single Cell Sequencing Data
Regression Models for Interval Censored Data
Accompanion to the Book on Interval Censoring by Bogaerts,
Komarek, and Lesaffre
Study Design and Data Analysis in the Presence of Error-Prone
Diagnostic Tests and Self-Reported Outcomes
DATRAS Trawl Survey Database Web Services
Functions to Support the ICES Transparent Assessment Framework
Estimation of Number of Clusters and Identification of Atypical
Units
Information Criteria for Generalized Linear Regression
Fit Generalized Odds Rate Hazards Model with Interval Censored
Data
Visualization and Tools for Ichimoku Kinko Hyo Strategies
A Minimal Wrapper Around NIH's 'iCite' API
A Button-Based GUI for Financial and Economic Data Analysis
Integrative clustering of multiple genomic data types
Empirical Bayes Variable Selection via ICM/M Algorithm
Data Analysis for ODS and Case-Cohort Designs with
Interval-Censoring
Graphical and Spatial Analysis for Prehistoric Iconography
Global Triangular and Penta-Hexagonal Grids Based on Tessellated
Icosahedra
Reproducible Data Retrieval from the ICPSR Archive
Simultaneous Confidence Intervals for Ranks
A Modified Random Survival Forest Algorithm
Tools for Exploring Multivariate Data via ICS/ICA
Interval-Censored Sequence Kernel Association Test
Outlier Detection Using Invariant Coordinate Selection
A package for semiparametric regression analysis of
interval-censored data
Estimating and Testing the Number of Interesting Components in
Linear Dimension Reduction
Indirect Cross-Validation (ICV) for Kernel Density Estimation
Vector Fields from Spatial Time Series of Population Abundance
R Interface to the US Census Bureau International Data Base API
Update Chinese ID Card Number to Eighteen Digits
Easy Manipulation of IDEAM's Climatological Data
Efficient Designs for Discrete Choice Experiments
Inference in Randomized Controlled Trials with Death and
Missingness
Jacquard Condensed Coefficients of Identity
Bayesian Dynamic Spatio-Temporal Models, Including the
Integrodifference Equation Model
Various Methods for Estimating Intrinsic Dimension
Isolate-Detect Methodology for Multiple Change-Point Detection
Integrative Differential Network Analysis in Genomics
Shiny App. Idiograms with Marks and Karyotype Indices
Assessment of Individual Identity in Animal Signals
Infectious Disease Model Library and Utilities
Regression Model for Progressive Illness Death Data
Integrated Discovery of Oncogenic Signatures
Durability of Vaccine Efficacy Against SARS-CoV-2 Infection
'Utilities of Institute of Data Analyses and Process Design
(www.zhaw.ch/idp)'
Imprecise Dirichlet Process for Survival Analysis
An Interactive Detector for Spatial Associations
Intrinsic Peak Analysis (IPA) for HRMS Data
Ultimate Formula Annotation (UFA) for HRMS Data Processing
Estimate Global Clustering in Infectious Disease
Convert Files to and from IDX Format to Vectors, Matrices and
Arrays
R Analysis package for iDynoMiCS Simulation Results
Irucka Embry's Miscellaneous USGS Functions
Functions to set and get the IEEE rounding mode
Irucka Embry's Miscellaneous Data Collection
Irucka Embry's Miscellaneous Text Collection
Robust Inference for Absolute Abundance in Microbiome Analysis
An integrative factor analysis model for drug-pathway
association inference
Toolkit for Item Factor Analysis with 'OpenMx'
Italian Fiscal Code ('Codice Fiscale') Utilities
Machine Learning Time Series Forecasting
Instagram 2014 Vancouver Top Colour Dataset
Score Taxon-Level IgA Binding in IgA-Seq Experiments
Statistical Tests and Utilities for Genetic Association
Guided Analytics for Testing Manufacturing Parameters
Computational Tools for the IG and IGL Copula Families
Interpreting Glucose Data from Continuous Glucose Monitors
A Collection of Network Data Sets for the 'igraph' Package
Convert iGraph graps to SoNIA .son files
Integrative Gene Set Enrichment Analysis Approaches
For Writing Graduate Institute Geneva Documents
Download Data from the International House Price Database
Computing Individual Components of the Gini and the Theil
Indices
Modeling Within Individual Variability as Predictor
Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Lee-Carter Mortality Models using Iterative Fitting Algorithms
Incremental Mixture Approximate Bayesian Computation (IMABC)
Integrated Methylation QTL Mapping and Allele-Specific Analysis
Binarize Images for Enhancing Optical Character Recognition
Implementation of the Canny Edge Detector for Images
Implementation of the Unsupervised Smooth Contour Line Detection
for Images
Find Corners in Digital Images with FAST-9
Implementation of the Harris Corner Detection for Images
Image Processing Functionality using the 'dlib' Package
Convolutional Neural Network for Face Detection
Aids in Processing and Plotting Data from a Lemna-Tec
Scananalyzer
Image Statistics Based on Processing Fluency
Image Processing Library Based on 'CImg'
Extra Image Processing Library Based on 'imager'
Deep Learning Models for Image Segmentation
Simple 'htmlwidgets' Image Viewer with WebGL Brightness/Contrast
IMAGing engINEs, Tools for Application of Image Filters to Data
Matrices
Delimit and Characterize Color Phenotype of the Pearl Oyster
Preprocessing Algorithms for Imbalanced Datasets
Mass Cytometry S4 Class Structure Pipeline for Images
Index of Multiple Deprivation Data for the UK
Get Movie, Television Data from the 'imdb' Database
Likelihood Methods for Mediation Analysis
R Interface for International Monetary Fund(IMF) Data API
Download Data from the International Monetary Fund's Data API
Infinite Mixtures of Infinite Factor Analysers and Related
Models
Gaussian Mixture Model for Multi-Omics Data Integration
Candidate Prescriptions Discovery Based on Pathway Fingerprint
Item Response Models for Multiple Ratings
Iterative Max-Min Entropy Margin-Maximization with Interaction
Terms for Feature Selection
Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires
Tunable Simulation of B- And T-Cell Receptor Repertoires
CSS Layouts (Grid and Flexbox) Implementation for R/Shiny
Calculation and Visualization of the Impact Effect Size Measure
Quantification of Population-Level Impact of Vaccination
Mechanical Loading Prediction Through Accelerometer Data
Imprecise Imputation for Statistical Matching
Compute Scores for Different Implicit Measures
Convert Between Bookmaker Odds and Probabilities
Enables Importing/Loading of Packages or Functions While
Creating an Alias for Them
Download and Manage Open Data from INEGI
Classification Trees with Imprecise Probabilities
Imputation of Financial Time Series with Missing Values and/or
Outliers
A collection of methods for left-censored missing data
imputation
The Multifactor Dimensionality Reduction (MDR) Analysis for
Incomplete Data
Impute Missing Values in a Predictive Context
Imputation Methods for Multivariate Multinomial Data
Impute Missing Data in Time Series Data with PSF Based Method
A General Multivariate Imputation Framework
Robust Multiple Imputation with Generalized Additive Models for
Location Scale and Shape
Test Bench for the Comparison of Imputation Methods
Imputing the Last Largest Censored Observation(s) Under Weighted
Least Squares
Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and
Other Metrics)
Immune Cell Gene Signatures for Profiling the Microenvironment
of Solid Tumours
Information Matrix Test for Generalized Partial Credit Models
Initialization Algorithms for Partitioning Cluster Analysis
Analysing Inbreeding Based on Genetic Markers
Pipe-Friendly Vector Replacement with Case Statements
Internal Control Analysis of Translatome Studies by Microarrays
Incremental Calculation of Dynamic Time Warping
Incremental Graphlet Counting for Network Optimisation
Compute, Handle, Plot and Model Incidence of Dated Events
Compute, Handle and Plot Incidence of Dated Events
Implements Empirical Bayes Incidence Curves
Comparison of Means for the Incomplete Paired Data
Insertion Deletion Analysis While Accounting for Possible
Missing Data
Nonparametric Independence Tests Based on Entropy Estimation
Relationship Between Species and Groups of Sites
Elicitation of Independent Conditional Means Priors for
Generalised Linear Models
Obtaining and Estimating Unidimensional and Multidimensional IRT
Dual Models
Framework for Specifying and Simulating Individual Based Models
Tests of Independence and Analysis of Dependence Between Point
Processes in Time
Data, Functions and Support Materials from the Book "industRial
Data Science"
Integrate INEGI’s (Mexican Stats Office) API with R
Measuring Inequality, Concentration, and Poverty
Interpolation and Extrapolation for Species Diversity
Infine-dimensional model (IDM) to analyse phenotypic variation
in growth trajectories
Functions to extract inferential values of a fitted model object
Inference about the standardized mortality ratio when evaluating
the effect of a screening program on survival
Methods for Causal Inference with Interference
Estimate and Account for Tumor Purity in Cancer Methylation Data
Analysis
Melt Curve Fitting and Melt Shift Analysis
Tools for Detecting Influential Data in Mixed Effects Models
Case Influence in Structural Equation Models
Identify Influential Observations in Binary Classification
Software Tools to Quantify Structural Importance of Nodes in a
Network
Identification and Classification of the Most Influential Nodes
Information Decomposition of Two-Phase Experiments
Data Exploration with Information Theory (Weight-of-Evidence and
Information Value)
Performance Analysis and Companion Functions for Binary
Classification Models
Multiple Imputation for Informative Censoring
Sensitivity Analysis Informed by a Test for Bias
Sequence Statistics for Relational Event Models
Calculates the Probability of Informed Trading (PIN)
Effects and Importances of Model Ingredients
Translate ICD-9 into Injury Severity Score
Bayesian Latent Gaussian Modelling using INLA and Extensions
Collection of Datasets for the USGS-INL Aquifer Monitoring
Networks
Functions to Inline C, C++, Fortran Function Calls from R
Convert Inline Comments to Documentation
Miscellaneous Functions for the USGS INL Project Office
Infix Operators for Detection, Subsetting and Replacement
Analyse Text Documents Using Ecological Tools
Quality Control of Climatological Daily Time Series
Tools to Easily Download Data from INSEE BDM Database
Tools to Download Insider Transactions and Holdings
Easy Access to Model Information for Various Model Objects
Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
High-Dimensional Changepoint Estimation via Sparse Projection
Inspection, Comparison and Visualisation of Data Frames
Validation of Arguments and Objects in User-Defined Functions
Inferring Shared Modules from Multiple Gene Expression Datasets
with Partially Overlapping Gene Sets
Check, Install and Load CRAN & USGS GRAN Packages
Using R to Install Stuff on Windows OS (Such As: R, 'Rtools',
'RStudio', 'Git', and More!)
A Collection of Insurance Datasets Useful in Risk Classification
in Non-life Insurance
Semiparametric Competing Risks Regression under Interval
Censoring
AUC Estimation of Interval Censored Survival Data
Reconstruction of a Directed Acyclic Graph with Interventions
Integrating Multiple Modalities of High Throughput Assays Using
Item Response Theory
An Implementation of Interaction Graphs of Aleks Jakulin
Joint Modeling of the Gene-Expression and Bioassay Data, Taking
Care of the Effect Due to a Fingerprint Feature
Integrated Prediction using Uni-Variate and Multivariate Random
Forests
Intensity of Change for Comparing Categorical Maps from
Sequential Intervals
Integrative Analysis of RNA-Seq and ChIP-Seq Data
The Visualization of Interactive Circos Plot
Tests for marginal interactions in a 2 class response model
Comprehensive, User-Friendly Toolkit for Probing Interactions
Calculates Critical Test Statistics to Control False Discovery
Rates in Marginal Effects Plots
interactive network analysis and visualization
Compute Chi-Square Measures with Corrections
Interaction Analysis of Repeated Measure Data
GUI to Analyse qPCR Results after PMA Treatment or not
Exact Confidence Intervals in the Presence of Interference
Multiplicative Interaction Models Diagnostics and Visualization
Interference Color Charts for Polarized Light Microscopy
Coercion Routines for Network Data Objects
Scheduling Interim Analyses in Clinical Trials
App for Scheduling Interim Analyses in Clinical Trials
Converts Tabular Data to Interleaved Vectors
Importing Interlinearized Corpora and Dictionaries as Produced
by Descriptive Linguistics Software
Plot the Effects of Variables in Interaction Terms
Hourly interpolation of multiple temperature daily series
Fit Interpretable Machine Learning Models
Interpreting High Resolution Mass Spectra
Binary Classifier and Regression Model Interpretation Functions
Simulation of Inter-Related Genomic Datasets
Weighted Logrank Tests and NPMLE for Interval Censored Data
Time-Weighted Averaging for Interval Data
Tools for Working with Points and Intervals
Hypothesis Testing Using the Overlapping Interval Estimates
Interventional Inference for Dynamic Bayesian Networks
Tools and Statistical Procedures in Plant Science
A Numerical Implementation of Interval-Valued Kriging
Numerical Integration for Integrated Likelihood
Mediation Analysis using Interventional Effects
Integrative Clustering of Multiple Genomic Dataset
Quantify and Control Reproducibility in High-Throughput
Experiments
methods for analyzing introgression between divergent lineages
Analysis of Time-Ordered Event Data with Missed Observations
Interface to Popular R Functions for Data Science Pipelines
Interval and Enum-Type Representation of Vectors
Analyse Biological Invasion Costs with the 'InvaCost' Database
Inventory Analytics and Cost Calculations
Reverse Engineers Regular Expression Patterns for R Objects
Threshold regression that fits the (randomized drift) inverse
Gaussian distribution to survival data
Tools for Exploring Multiple Response Data
Graphical Tools for Exploring Data with 'iNZight'
Tools for Exploring Regression Models with 'iNZight'
A Unified Framework for Input-Output Operations in R
Calling Copy Number Alterations in Amplicon Sequencing Data
Calculate the Number of Required Flows for Semiconductor
Sequencing
Functions for Smoothing with Infinite Order Flat-Top Kernels
Importing and Manipulating Symmetric Input-Output Tables
Iterative Pruning Population Admixture Inference Framework
Tools for Message Passing Between Processes
Iterative Pruning to Capture Population Structure
Kendall's Tau Partial Corr. for Survival Trait and Biomarkers
Inverse Probability of Censoring Weights to Deal with Treatment
Switch in Randomized Clinical Trials
Basic Functions to Check Readability, Consistency, and Content
of an Individual Participant Data File
Map Digitized Survival Curves Back to Individual Patient Data
Spatial Interpolation by Inverse Path Distance Weighting
Fast Implementation of the Iterative Proportional Fitting
Procedure in C
List Balancing for Reweighting and Population Synthesis
Identification of Parental Lines via Genomic Prediction
Functions and Data for the Book 'Integrated Population Models'
Intervention in Prediction Measure (IPM) for Random Forests
Interfaces to Phylogenetic Software in R
Manipulate, Validate and Resolve 'IP' Addresses
Inverse Probability Weighted Cox Model with Corrected Sandwich
Variance
Inverse Probability Weighted Estimation of Average Treatment
Effect with Misclassified Binary Outcome
Inverse-Propensity-Weighting for Partially Nested Designs
Protein Quantification in Mass Spectrometry-Based Proteomics
Iterated Racing for Automatic Algorithm Configuration
Integrative Random Forest for Gene Regulatory Network Inference
Correlation Coefficients for Information Retrieval
Regression Methods for Interval-Valued Variables
Collection of Practical Institutional Research Examples and
Tutorials
Global Innovation Through Company Level Data
A Dynamic Bipartite Latent Space Model to Analyse Irish
Companies' Boards from 2003 to 2013
Classes and Methods for Seismic Data Analysis
Native R Kernel for the 'Jupyter Notebook'
Fast Truncated Singular Value Decomposition and Principal
Components Analysis for Large Dense and Sparse Matrices
Various Coefficients of Interrater Reliability and Agreement
Computing Chance-Corrected Agreement Coefficients (CAC)
Analysis of Longitudinal Data with Irregular Observation Times
Intraclass Correlations for Quantifying Inter-Rater Reliability
Coefficients of Interrater Reliability – Generalized for
Randomly Incomplete Datasets
Item Response Theory and Computerized Adaptive Testing Functions
Family of Bayesian EMM Algorithm for Item Response Models
Item Response Theory Analysis with a Graphic User Interface
A Collection of Functions Related to Item Response Theory (IRT)
Unidimensional Item Response Theory Modeling
Utilities and Probability Distributions Related to
Multidimensional Person Item Response Models
Estimation of Tree-Based Item Response Models
Extract Cell Density and Nearest Distance Based on 'PerkinElmer
InForm' Software Output
Implementation for the ISA Abstract Model
Iterative Selection of Blocks of Features - ISBF
Converts ISCO-08 to Job Prestige Scores, ISCO-88 and Job Name
Proper Scoring Rules for Missing Value Imputation
Provides datasets for Introduction to Statistical Data Analysis
for the Life Sciences
Parse 'NOAA' Integrated Surface Data Files
Integrative Dimension Reduction Analysis for Multi-Source Data
Fitting Ising Models Using the ELasso Method
Sampling Methods and Distribution Functions for the Ising Model
Data for an Introduction to Statistical Learning with
Applications in R
Introduction to Statistical Learning, Second Edition
An Introduction to Statistical Modeling of Extreme Values
Index of Local Sensitivity to Nonignorability
Check if an 'externalptr' is a Null Pointer
Functions to Perform Isotonic Regression
Generate Isolines and Isobands from Regularly Spaced Elevation
Grids
Isotope Origin Clustering and Assignment Tools
Isomorphism Check for Multi-Stage Factorial Designs with
Randomization Restrictions
Confidence intervals for current status data based on
transformations and bootstrap
Correcting Drift and Carry-over in Continuous Isotopic
Measurements
Order-Restricted Inference for Microarray Experiments
Tools for Carbonate Isotope Geochemistry
Calculation of isotopic pattern for a given molecular formula
Statistical Toolbox for Radiometric Geochronology
Isoscape Computation and Inference of Spatial Origins using
Mixed Models
Isotonic Regression on Survival Analysis
Active Set and Generalized PAVA for Isotone Optimization
Penalized Isotonic Regression in one and two dimensions
Discovery, Retrieval, and Analysis of Water Isotope Data
Week of the year and weekday according to ISO 8601
The Iterated Score Regression-Based Estimation Algorithm
Tools and Data for the International Soil Radiocarbon Database
Obtaining Open Data from Instituto Canario De Estadistica
(ISTAC) API
A Graphical Interface to Perform STOCSY Analyses on NMR Data
The Italian Survey on Household and Wealth, 2008 and 2010
Integral Transformation Methods for SDR in Regression
Approximate Probability Densities by Iterated Laplace
Approximations
Efficient Iterator for Permutations and Combinations
itertools2: Functions creating iterators for efficient looping
Analysis of the International Trade Network
Statistical Learning for Individualized Treatment Regime
Variable Selection for Optimal Individualized Dynamic Treatment
Regime
Running Interrupted Time Series Analysis
Interpreting Time Series and Autocorrelated Data Using GAMMs
Time Series Analysis Using the Innovations Algorithm
Incorporating Uncertainties in Propensity Scores
Instrumental Variable Analysis in Case-Control Association
Studies
Profiling Compliers and Non-Compliers for Instrumental Variable
Analysis
Hypothesis Testing in Cluster-Randomized Encouragement Designs
Ensures Mutually Consistent Beliefs When Using IVs
Instrumental fixed effect panel data model
Estimate IV-Optimal Individualized Treatment Rules
Statistical Inference and Sensitivity Analysis for Instrumental
Variables Model
Instrumental Variables: Extrapolation by Marginal Treatment
Effects
Instrumental-Variables Regression by '2SLS', '2SM', or '2SMM',
with Diagnostics
Create Independent Evidence in IV Analyses and Do Sensitivity
Analysis in Regression and IV Analysis
Structural Additive Cumulative Intensity Models with IV
Produces an IVY Plot (Similar to Dot Plot) with/without
Frequencies
Improved methods for causal inference and missing data problems
Framework for Tick Population and Infection Modeling
Test Similarity Between Binary Data using Jaccard/Tanimoto
Coefficients
A Swift, Versatile Phylogenomic and High-Throughput Sequencing
Simulator
Jackknife Estimates of Kaplan-Meier Estimators or Integrals
Correcting Nonparametric Frontier Measurements for Outliers
Statistical Inference for Unsupervised Learning
Jaccard Index for Population Structure Identification
Blind Source Separation Methods Based on Joint Diagonalization
and Some BSS Performance Criteria
Supporting Files and Functions for the Book Bayesian Modelling
with 'JAGS'
A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
Conversion Between Jalali (Persian or Solar Hijri) and Gregorian
Calendar Dates
Analysis Tools for the 'JAMES' Framework
Simple Tools for Examining and Cleaning Dirty Data
Directory of Open Access Journals Client
Functions for the Japanese Regional Mesh Codes ('JIS X 0410')
Just a Rather Bayesian Evidence Synthesis
R modules for JASPAR databases: a collection of transcription
factor DNA-binding preferences, modeled as matrices
Jaya, a Gradient-Free Optimization Algorithm
An R Interface to the JBrowse 2 Genome Browser
Extended Classification of Weather Types
Colors Palettes for R and 'ggplot2', Additional Themes for
'ggplot2'
Journal Citation Reports ('JCR') Impact Factor by 'Clarivate'
'Analytics'
Monte Carlo Option Pricing Algorithms for Jump Diffusion Models
with Correlational Companies
R Markdown Templates for Journal of Data Science
A Fast and Scalable Joint Estimator for Integrating Additional
Knowledge in Learning Multiple Related Sparse Gaussian
Graphical Models
Fast Extrapolation of Time Features using K-Nearest Neighbors
One-to-One Gene-Probeset Mapping for Affymetrix Human
Microarrays
Tools and GUI for Analyzing Time Series Data of Just Finance and
Econometrics
Joint Generalized Estimating Equation Solver
Performs the Joint Graphical Lasso for Sparse Inverse Covariance
Estimation on Multiple Classes
Chinese Text Segmentation Data for jiebaR Package
Approximate Inclusion Probabilities for Survey Sampling
Joint Latent Class Trees for Joint Modeling of Time-to-Event and
Longitudinal Data
Joint Latent Space Model for Social Networks with Multivariate
Attributes
Joint Modeling of Longitudinal and Survival Data
Joint Modeling of Longitudinal and Time-to-Event Data under a
Bayesian Approach
Extended Joint Models for Longitudinal and Time-to-Event Data
Joint Mean-Covariance Models using 'Armadillo' and S4
Fitting Joint Mean and Dispersion Effects Models
Joint Modeling of Longitudinal and Survival Data - Power
Calculation
Time Series Analysis Toolkit Based on Symbolic Aggregate
Discretization, i.e. SAX
Permutation Tests for Nonparametric Statistics
Connect to the 'jamovi' Statistical Spreadsheet
Run Code as an RStudio Job - Free Your Console
Modelling and Simulating Judgments of Frequency
Joint Modelling of Repeated Measurements and Time-to-Event Data
Joint Modelling for Meta-Analytic (Multi-Study) Data
Joint Modelling of Multivariate Longitudinal Data and
Time-to-Event Outcomes
Joint Frailty-Copula Models for Tumour Progression and Death in
Meta-Analysis
Joint Analysis and Imputation of Incomplete Data
Joint Approximate Diagonalization of a Set of Square Matrices
Joint Mean and Covariance Estimation for Matrix-Variate Data
Semiparametric Joint Models for Longitudinal and Counting
Processes
End-to-End Sparse Gaussian Graphical Model Simulation,
Estimation, Visualization, Evaluation and Application
Joint N-Mixture Models for Site-Associated Species
Risk estimation using the joint probability method
Joint Segmentation of Multivariate (Copy Number) Signals
Perform Joins or Minus Queries on 'Excel' Files
Multilevel Joint Modelling Multiple Imputation
A Suite of Routines for Working with Jordan Algebras
Unit-Level and Area-Level Small Area Estimation
Add Josa Based on Previous Letter in Korean
JavaScript Object Signing and Encryption
Journal Abbreviations for BibTeX Documents
Implements Under/Oversampling for Probability Estimation
Tool for Diagnosis of Tables Joins and Complementary Join
Features
Covariance and Inverse Covariance Matrix Estimation Using Joint
Penalty
Jump Q-Learning for Individualized Interval-Valued Dose Rule
Obtain 'jQuery' as an HTML Dependency Object
Exchange Commands Between R and 'JavaScript'
Joint Random Forest (JRF) for the Simultaneous Estimation of
Multiple Related Networks
Jack-Knife Support for Evolutionary Distinctiveness Indices I
and W
Item Response Theory Modeling and Scoring for Judgment Data
Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes
A 'RStudio' Addin to Send 'JavaScript' Code to the 'V8' Console
Calculates the j-Score Between Two Clustering Assignments
Semiparametric Joint Modeling of Survival and Longitudinal Data
Mediation Analysis Using Joint Significance
'RStudio' Addins and 'Shiny' Modules for Medical Research
A 'Base64' Encode/Decode Package with Support for JSON
Output/Input and UTF-8
Convert Between 'R' Objects and Javascript Object Notation
(JSON)
A Simple and Robust JSON Parser and Generator for R
Create Tables from Different Types of Regression
Create Interactive Trees with the 'jQuery' 'jsTree' Plugin
A Wrapper of the JavaScript Library 'jsTree'
Estimate Parameters of the Best-Fitting JohnsonSU Distribution
Analysis and Presentation of Social Scientific Data
Forecasting Long-Term Growth of the U.S. Stock Market and
Business Cycles
Automated and Manual Extraction of Numerical Data from
Scientific Images
Seamless Integration Between R and 'Julia'
A Functionally Oriented Interface for Integrating 'Julia' with R
Importing and Working with Track and Field Data
The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages
Human and Machine-Readable Justifications and Justified
Decisions Based on 'YAML'
Justifying Alpha Levels for Hypothesis Tests
Principal Component Analysis (PCA) and Whitening
Construct Complex Table with 'kable' and Pipe Syntax
Kernel Adaptive Density Estimation and Regression
Analysis of Chronological Patterns from Archaeological Count
Data
Kernel Approaches for Nonlinear Genetic Association Regression
Package to identify and sort genes overexpressed
Kantorovich Distance Between Probability Measures
Encoding of Sequences Based on Frequency Matrix Chaos Game
Representation
Test the Homogeneity of Kappa Statistics
An R-Shiny Application for Calculating Cohen's and Fleiss' Kappa
Non-Additive Measure and Integral Manipulation Functions
Sample Size Estimation Functions for Studies of Interobserver
Agreement
Calculates "vectorial Kappa", an index of congruence between
patchy mosaics
K-Adaptive Partitioning for Survival data
Learning programming with Karel the robot
An Interface for Microclimate Time Series Analysis
Rendering Math to HTML, 'MathML', or R-Documentation Format
Kaya Identity Data for Nations and Regions
Khattree-Bahuguna's Univariate and Multivariate Skewness
Kernel Change Point Detection on the Running Statistics
Kernel Smoothing for Bivariate Copula Densities
Kernel Density Estimation with Parametric Starts and Asymmetric
Kernels
Nonparametric method for identifying discordant phylogenetic
trees
Multivariate Kernel Density Estimation with Vine Copulas
Fast Multidimensional Entropy Estimation by k-d Partitioning
Tools for Working with Multidimensional Data
Kernel Estimator and Bandwidth Selection for Density and Its
Derivatives
Arrays with Better Control over Dimension Dropping
Collect, Assemble and Model Air Pollution, Weather and Health
Data
Calculate Solutions to the Kelvin Differential Equation using
Bessel Functions
Kendall rank correlation and Mann-Kendall trend test
Simulate and Visualize Kendall Random Walks and Related
Distributions
Kernel-Smoothed Nonparametric Methods for Environmental Exposure
Data Subject to Detection Limits
Knowledge Synthesis in Agriculture - From Experimental Network
to Meta-Analysis
R Interface to the Keras Deep Learning Library
Nonparametric kernel estimation of the distribution function.
Bandwidth selection and estimation of related functions
Expectile Regression in Reproducing Kernel Hilbert Space
Distance Weighted Discrimination (DWD) and Kernel Methods
Smoothed Bootstrap and Random Generation from Kernel Densities
Kernel Factory: An Ensemble of Kernel Machines
Kernel Density Estimation for Heaped and Rounded Data
Kernel Smoothing Tools for Philology and Historical Dialectology
Post-Selection Inference for Nonlinear Variable Selection
Kernel Estimation of Hazard Function in Survival Analysis
A Kernel Regression-Based Multidimensional Wind Turbine Power
Curve
Kernel Machine Score Test for Semi-Competing Risks
Functions for Kernel Smoothing Supporting Wand & Jones (1995)
Bayesian Designs for Early Phase Clinical Trials
Keyboard and Mouse Input Simulation for Windows OS
Access the System Credential Store from R
Decrypt Passwords from Gnome Keyring, Windows Data Protection
API and macOS Keychain
K-Fold Cross Validation for Factor Analysis
Kalman Filter and Smoother for Exponential Family State Space
Models
Integrated Code Chunk Anchoring and Referencing for R Markdown
Documents
Kalman Filter, Smoother and Disturbance Smoother
Kendall Functional Principal Component Analysis
Kernel Based Gradient Matching for Parameter Inference in
Ordinary Differential Equations
Methods for Calculating 'KHQ' Scores and 'KHQ5D' Utility Index
Scores
Colour Schemes for Scientific Data Visualization
A Simple Data Management and Sharing Tool
Kidney Functions: Clinical and Epidemiological
Simulate and Estimate Close-Kin Dispersal Kernels
Framework for the Analysis of Kinetic Visual Field Data
Example Data from the Multi-Modal MRI 'Reproducibility' Resource
Example Functional Imaging Data from the Multi-Modal MRI
'Reproducibility' Resource
Example T1 Structural Data from the Multi-Modal MRI
'Reproducibility' Resource
a Keep It Simple Species Migration Model
Data Manipulation Functions Implemented in C
Spectral Response of Water Wells to Harmonic Strain and Pressure
Signals
A Wrapper for Querying KISTERS 'WISKI' Databases via the 'KiWIS'
API
Classifications and Codelists for Statistics Norway
Kullback-Leibler Divergence and Other Tools to Analyze
Frequencies
Confidence intervals for the Kaplan-Meier estimator
Kaplan-Meier Estimator with Constraints for Right Censored Data
-- a Recursive Computational Algorithm
Fast K-Mer Counting and Clustering for Biological Sequence
Analysis
Kaplan-Meier Multiple Imputation for the Analysis of Cumulative
Incidence Functions in the Competing Risks Setting
K-Means for Longitudinal Data using Shape-Respecting Distance
K-Means with Simultaneous Outlier Detection
Data sets from Klein and Moeschberger (1997), Survival Analysis
Generate Feasible Samples of a Knapsack Problem
A General-Purpose Package for Dynamic Report Generation in R
Data Language Engine for 'knitr' / 'rmarkdown'
An Accurate kNN Implementation with Multiple Distance Measures
Time Series Prediction using K-Nearest Neighbors Algorithm
(Parallel)
Interactive Document for Working with KNN Analysis
k Nearest Neighbors with Grid Search Variable Selection
K Nearest Neighbor Forecasting with a Tailored Similarity Metric
The Knockoff Filter for Controlled Variable Selection
Whole-Genome Sequencing Data Analysis via Knockoff Statistics
Discriminating Well Surveyed Spatial Units from Exhaustive
Biodiversity Databases
Knowledge-Based Guided Regularized Random Forest
Knowledge Discovery by Accuracy Maximization
Get Data from the 'KOF Datenservice' API
A Genetic Algorithm for Fixed-Size Subset Selection
Functional Summary and Meta-Analysis of Gene Expression Data
Supervised and Unsupervised Self-Organising Maps
An Improved Evaluation of Kolmogorov's Distribution
Simply Beautiful PDF Letters from Markdown
Quantify the Robustness of Causal Inferences
KONP Tests: Powerful K-Sample Tests for Right-Censored Data
Text Analysis with Emphasis on POS Tagging, Readability, and
Lexical Diversity
Language Support for 'koRpus' Package: English
Variable Selection by Revisited Knockoffs Procedures
Koul's Minimum Distance Estimation in Regression and Image
Segmentation Problems
Cubic Spline Fitting with Knot Selection
Kernel PC Algorithm for Causal Structure Detection
Determination of K Using Peak Counts of Features for Clustering
Method for Clustering Partially Observed Data
A Quantified Implementation of the Kraljic Matrix
Geospatial Kriging with Metropolis Sampling
Kriging-Based Inversion for Deterministic and Noisy Computer
Experiments
Measuring Agreement Using Krippendorff's Alpha Coefficient
Keen and Reliable Interface Subroutines for Bioinformatic
Analysis
K-Sample Rank Tests and their Combinations
Goodness-of-Fit Tests using Kernelized Stein Discrepancy
Computing P-Values of the K-S Test for (Dis)Continuous Null
Distribution
Identify Kinase Substrate Relationships Using Dynamic Data
Unbiased Estimators for Cumulant Products and Faa Di Bruno's
Formula
Basic Functions in Knowledge Space Theory Using Matrix
Representation
Co-Tucker3 Analysis of Two Sequences of Matrices
Configurable Function for Solving Families of Nonlinear
Equations
Datasets and functions from the (now non-existing) Faculty of
Life Sciences, University of Copenhagen
Read/Write Files in Key-Value-Hierarchy Format
Calculation of Groundwater Mounding Beneath an Infiltration
Basin
Utility Functions for Statistical Analysis Report Generation and
Monte Carlo Studies
Multi-Scale Motions Separation with Kolmogorov-Zurbenko
Periodogram Signals
Kolmogorov-Zurbenko Fourier Transform and Applications
Kolmogorov-Zurbenko Spatial Smoothing and Applications
Sparse Generalized Linear Model with L0 Approximation for
Feature Selection
Fast Algorithms for Best Subset Selection
An L1-Version of the Spectral Clustering
Friedman's Boosting Algorithm for Regularized Linear Regression
Miscellaneous Scripts from the Data Science Laboratory (UCPH)
Ordination and Multivariate Analysis for Ecology
Relabelling MCMC Outputs of Mixture Models
Identification, Tuning, Visualisation and Analysis of Labour
Market Areas
Classify Multilingual Labour Market Free-Text to Standardized
Hierarchical Occupations
Simplex Optimization Algorithms for Laboratory and Manufacturing
Processes
Libreria Del Laboratorio Di Statistica Con R
Data Sets for the Book "Experimental Design for Laboratory
Biologists"
Gliding Box Lacunarity and Other Metrics for 2D Random Closed
Sets
Routines for Fit, Inference and Diagnostics in LAD Models
Estimation of Indicators on Social Exclusion and Poverty
Duncan test, Tukey test and Scott-Knott test
Interface to the Lake Multi-Scaled Geospatial and Temporal
Database
Local Approximate Gaussian Process Regression
Tools for the Analysis of Ecosystem Metabolism
Lake Temperatures Collected by Situ and Satellite Methods from
1985-2009
Modeling Data with Functional Programming
Collection of Internal Consistency Reliability Coefficients
Variational Seq2Seq Model with Lambda Transformer for Time
Series Analysis
Create a Runtime for Serving Containerised R Functions on 'AWS
Lambda'
Probabilistic Models to Analyze and Gaussianize Heavy-Tailed,
Skewed Data
Log-Analytic Methods for Multiplicative Effects
Liquid Association for Network Dynamics Detection
Landmark Estimation of Survival and Treatment Effect
Automated Spatial Prediction using Ensemble Machine Learning
Landmark Prediction of a Survival Outcome
Radiometric and Topographic Correction of Satellite Imagery
Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or
Temperature
Landscape Metrics for Categorical Map Patterns
Langevin Analysis in One and Two Dimensions
Analyzing Linguistic Data: A Practical Introduction to
Statistics
Automated Setup and Auto Run for R Language Server
Laplace Deconvolution with Noisy Discrete Non-Equally Spaced
Observations on a Finite Time Interval
Complete Environment for Bayesian Inference
Analytics, Data Mining & Machine Learning Sidekick
Local Average Response Functions for Instrumental Variable
Estimation of Treatment Effects
Leaf Area Determination from Visual Image
Serialization Interface for Large List Objects
Estimation of Lifetime Attributable Risk of Cancer from
Radiation Exposure
Least Angle Regression, Lasso and Forward Stagewise
Modelling Interactions in High-Dimensional Data with
Backtracking
High-Dimensional Lasso Generalized Estimating Equations
Nonparametric P-Value Estimation for Predictors in Lasso
High-Dimensional Inference with the Penalized Score Test
L1 regularized regression (Lasso) solver using the Cyclic
Coordinate Descent algorithm aka Lasso Shooting
Sparsed Sliced Inverse Regression via Lasso
Draws Diagrams Useful for Checking Latent Scales
Fast Computation of Latent Correlations for Mixed Data
Latent Position and Cluster Models for Statistical Networks
Utilities for Scheduling Functions to Execute Later with Event
Loops
Functions to Calculate Common Laterality Statistics in
Primatology
Diff 'rmarkdown' Files Using the 'latexdiff' Utility
A Framework for Clustering Longitudinal Data
Density Estimation and Nonparametric Regression on Irregular
Regions
Extra Graphical Utilities Based on Lattice
Multi-Resolution Kriging Based on Markov Random Fields
Complex Survey Structural Equation Modeling (SEM)
Path Diagrams for 'Lavaan' Models via 'DiagrammeR'
Lava Estimation for the Sum of Sparse and Dense Signals(3
Methods)
Tools for Model Specification in the Latent Variable Framework
Lava Estimation for the Sum of Sparse and Dense Signals
Latent (Variable) Analysis with Bayesian Learning
Tools for Biostatistics, Public Policy, and Law
Loglikelihood Adjustment for Extreme Value Models
Persistent Large Data Array with Lazy-Loading on Demand
Progress Bar with Remaining Time Forecast Method
Applying the Lazy-Greedy Spanning Algorithm
Delayed Read for 'GDAL' Vector Data Sources
Learn Computer and Data Science using Algorithmic Trading
Latent Budget Analysis for Compositional Data
Limited Memory BFGS Minimizer with Bounds on Parameters with
optim() 'C' Interface
Length-biased correction to survival curve estimation
Log Binomial Regression Model in Exact Method
Log-Binomial Regression with Constrained Optimization
Latent Class Analysis (LCA) with Familial Dependence in Extended
Pedigrees
Variable Selection for Latent Class Analysis
Data sets for package ``LMERConvenienceFunctions''
A Bayesian Multi-Dimensional Couple-Based Latent Risk Model
Efficient Estimation of Discrete-Time Multivariate Frailty Model
Using Exact Likelihood Function for Grouped Survival Data
Extended Mixed Models Using Latent Classes and Latent Processes
Simple Tools to Compute Landscape Connectivity Metrics
A Tool for Selecting Genes Related to Survival Outcomes using
Longitudinal Gene Expression Data
Ordinal Outcomes: Generalized Linear Models with the Log Link
Bayesian Joint Latent Class and Regression Models
Univariate and Bivariate Latent Change Score Modeling
Local Correlation, Spatial Inequalities, Geographically Weighted
Regression and Other Tools
Collapsed Gibbs Sampling Methods for Topic Models
Selection of Statistically Similar Research Groups
Prototype of Multiple Latent Dirichlet Allocation Runs
User-Friendly Interface for Review of Scientific Literature
Latent Dirichlet Allocation Coupled with Time Series Analyses
Tuning of the Latent Dirichlet Allocation Models Parameters
Interactive Visualization of Topic Models
Lan-DeMets Method for Group Sequential Boundaries
Linkage Disequilibrium Corrected by the Structure and the
Relatedness
Longitudinal Drift-Diffusion Mixed Models (LDDMM)
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Hidden Markov Model for Financial Time-Series Based on Lambda
Distribution
Calculate and Predict the Low Density Lipoprotein Values
Calculating Linkage Disequilibrium (LD) in Human Population
Groups of Interest
Finding Locally D-optimal optimal designs for some nonlinear and
generalized linear models
Linkage Disequilibrium Shrinkage Estimation for Polyploids
The Artificial Neural Networks Algorithm Leabra
Rapid Digital Image Analysis of Leaf Area
Provides Drill Down Functionality for 'leaflet' Choropleths
High-Performance 'WebGl' Rendering for Package 'leaflet'
Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
'ESRI' Bindings for the 'leaflet' Package
Extra Functionality for 'leaflet' Package
An R Gallery for China and Other Geojson Choropleth Map in
Leaflet
Interactive Web-Maps Based on the Leaflet JavaScript Library
Leaflet Map Plugin for Drawing and Editing
Include Tables, Images and Graphs in Leaflet Pop-Ups
Calculates the Leaf Area Index (LAD) and Other Related Functions
Silhouette to Area Ratio of Tilted Surfaces
Finds "Local Subnetworks" Within an Interaction Network which
Show Enrichment for Differentially Expressed Genes
Constructing Gene Co-Expression Networks for Single-Cell
RNA-Sequencing Data Using Pseudotime Ordering
Likelihood Estimation of Admixture in Parents From Offspring
Genotypes
latent effect adjustment after primary projection
Border and Area Estimation of Data Measured with Additive Error
Functions for Learning Bayesian Inference
Data and Functions to Accompany the Book "Learning R"
Elemental Descriptive and Inferential Statistics
OECD PISA Datasets from 2000-2018 in an Easy-to-Use Format
Population Genetic Simulations & Numerical Analysis
Datasets and Code Examples from P. J. Aphalo's "Learn R" Book
An Interactive Environment for Learning Statistics
Modelling Pathways and Movement Potential Within a Landscape
(Version 1.8.0)
Utilities for Importing Data from Plain Text Accounting Files
Historical and Ahistorical Population Projection Matrix Analysis
R Bindings for the Hong Kong Legislative Council API
Interface to the Comparative Legislators Database
Latent Environmental & Genetic InTeraction (LEGIT) Model
R Implementation of Leiden Clustering Algorithm
Implements the Leiden Algorithm via an R Interface
Length-Based Multispecies Analysis by Numerical Simulation
Access Landscape Evaporative Response Index Raster Data
Vectorised Nested if-else Statements Similar to CASE WHEN in
'SQL'
Data Handling and Analysis in Macroecology
Find Related Items and Lexical Dimensions in a Lexicon
Plot Lexis Diagrams for Demographic Purposes
Extractive Summarization of Text with the LexRank Algorithm
Estimation of the Local False Discovery Rates by Type II Maximum
Likelihood Estimation
Estimating Local False Discovery Rates Using the Method of
Moments
Estimating Local False Discovery Rates Using Empirical Bayes
Methods
Calculation of Low Flow Statistics for Daily Stream Flow Data
Locally Gaussian Distributions: Estimation and Methods
Simulation and Estimation of Log-GARCH Models
Tests for Genetic Association/Gene-Environment Interaction in
Longitudinal Studies
Example Datasets for a Learning Guide to R
Set-Based Tests for Genetic Association in Longitudinal Studies
A Set of Methods for Longitudinal Data Objects
Fit Sex-Specific Life History Models with Missing
Classifications
Linking Singe-Cell Transcriptomes Atween Contemporary
Subpopulation Genomes
Various Utilities for Library Science/Assessment and Cataloging
Linear Test Statistics for Permutation Inference
Open Source Geometry Engine ('GEOS') C API
Linear Predictive Models Based on the LIBLINEAR C/C++ Library
Linear Classification with Online Adaptation of Coordinate
Frequencies
Design of Optimum-Path Forest Classifiers
Libraries, Data Dictionaries, and a Data Step for R
Install, Update, Load Packages from CRAN, 'GitHub', and
'Bioconductor' in One Step
Library Snapshot for Packages and Dependencies in Use by Current
Session
Read, Create and Write 'PharmML' Standard Output (so) XML Files
Fast and Accurate Evaluation, Random Number Generation and
Parameter Estimation of Skew Stable Distributions
The LIC Criterion for Optimal Subset Selection
Light Cone Reconstruction of States - Predictive State
Estimation From Spatio-Temporal Data
Forest Analysis with Airborne Laser Scanning (LiDAR) Data
Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Financial and Actuarial Mathematics for Life Contingencies
Manage the Life Cycle of your Package Functions
Framework for Traditional Life Insurance Contracts
Two-Parameter HMD Model Life Table System
Compute the Top Decile Lift and Plot the Lift Curve
Wavelet Lifting Estimators of the Hurst Exponent for Regularly
and Irregularly Sampled Time Series
Containerize R Markdown Documents for Continuous Reproducibility
Tools for Communication with Lightning-Viz Server
Implementation of the 'Lights Out' Puzzle Game
Locally Induced Gaussian Process Regression
Methods for Maximum Likelihood Estimation
Likelihood Analyses for Common Statistical Tests
Metabolomics Personalized Pathway Analysis Tool
For Implementation of Feed Reduction, Learning Examples, NLP and
Code Management
Linear Inverse Model examples and solution methods
Multivariate Data Visualization with Tours and Embeddings
Jitter/CI Plot with Ordered Points Below the Limit of Detection
Perform Polynomial Evaluation of Linearity
Binning and Plotting of Linearly Referenced Data
Static Univariate Frequentist and Bayesian Linear Calibration
Sampling Multivariate Normal Distribution under Linear
Constraints
Functions to Explore L-Systems (Lindenmayer Systems)
The Lindley Distribution and Its Modifications
Manipulate Formulas and Evaluate Marginal Effects
Change Point Detection in High-Dimensional Linear Regression
Models
Linear Algorithm for Simulating Quantiles in Multiscale
Change-Point Segmentation Problem
Minimum Distance Estimation in Linear Regression Model
Easy Linguistics Document Writing with R Markdown
Linking Geographic Information Systems, Remote Sensing and Other
Command Line Tools
Plot Linkage Group Maps with Quantitative Trait Loci
Tools for Generating, Visualizing, and Analysing Link
Communities in Networks
Linked Emulator of a Coupled System of Simulators
Linkage information based genotype imputation method
Bivariate Correlations Calculation and Visualization
Generate Concentration-Time Profiles from Linear PK Systems
Interactive Interpretation of Linear Regression Models
Manipulation of Linear Systems of (in)Equalities
Lipid Annotation for LC-MS/MS DDA or DIA Data
Integrative Visualizations of the Lipidome
Implements Queue, PriorityQueue and Stack Classes
Statistical Methods for the Item Count Technique and List
Experiment
Incomplete Array with Arbitrary R Objects as Indices
A Toolbox for Working with R Arrays in a Functional Programming
Style
List-Based Rules for Dynamic Treatment Regimes
Tests of independence based on the Longest Increasing
Subsequence
'htmlwidget' for Interactive Views of R Lists
Lightweight Portable Message Queue Using 'SQLite'
Dataset and Tools to Research the Riddle of Literary Quality
Liu Regression with Liu Biasing Parameters and Statistics
Local Interpretable (Model-Agnostic) Visual Explanations
Leveraging Learning to Automatically Manage Algorithms
Local Log-linear Models for Capture-Recapture
Logit Leaf Model Classifier for Binary Classification
Data Analysis of Liquid-Liquid Systems using R
Add Standardized Regression Coefficients to lm-Objects
Linear Fixed Effects Models for Diallel Crosses
Linear Mixed-Effects Models using 'Eigen' and S4
Linear Mixed-Effects Models with Censored Responses
Information Matrices for 'lmeStruct' and 'glsStruct' Objects
Linear Mixed Effects Models for QTL Mapping for Multienvironment
and Multitrait Analysis
Compute the Personalized Activity Index Based on a Negative
Binomial Model
Compute the Personalized Activity Index Based on a Flexible
Bayesian Negative Binomial Model
Model Selection and Post-Hoc Analysis for (G)LMER Models
Bootstrap Methods for Nested Linear Mixed-Effects Models
Add smoothing spline modelling capability to nlme
Functions for estimation and inference of selection in
age-structured populations
Filter Methods for Parameter Estimation in Linear and Non Linear
Regression Models
Fit Latent Multivariate Mixed Effects Location Scale Models
Repeated Measurement Models for Discrete Times
Advanced L-Moment Fitting of Distributions
L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
(Precipitation) Frequency Analysis and Variability with
L-Moments from 'lmom'
Regional Frequency Analysis using L-Moments
An Algorithm for Gene Co-Expression Analysis
Data and Functions Used in Linear Models and Regression with R:
An Integrated Approach
Linear Ridge Regression with Ridge Penalty and Ridge Statistics
Exact Variable-Subset Selection in Linear Regression
Non-Parametric Causal Effects of Feasible Interventions Based on
Modified Treatment Policies
Linear Regression with Non-Constant Variances
A Package to Visualize Linear Models Features and Play with Them
Long Non-Coding RNA Differential Expression Analysis
LncRNA Identification and Analysis Using Heterologous Features
Identifying the Pathways Regulated by LncRNA Sets of Interest
LogNormal Response Time Item Response Theory Models
Explore Intra-Event Suspended Sediment Dynamics
Loadings for Principal Component Analysis and Partial Least
Squares
Cleaner Workspaces with Shared Variable Environments
Nonparametric Methods for Generating High Quality Comparative
Effectiveness Evidence
Local Control Strategy for Robust Analysis of Cross-Sectional
Data
Localization Processes for Functional Data Analysis
Estimation of Marginal Treatment Effects using Local
Instrumental Variables
LIME-Based Explanations with Interpretable Inputs Based on
Ceteris Paribus Profiles
Package for Sequence Analysis by Local Score
Detection and Localization of Executable Files
Identification of Location Game Equilibria in Networks
Functions for Performing Local FDR Estimation when Null and
Alternative are Poisson
Local Regression, Likelihood and Density Estimation
Test of Stationarity and Localized Autocovariance
Datasets for "Statistics: UnLocking the Power of Data"
Datasets for 'Statistics: Unlocking the Power of Data'
Fast Implementation of (Local) Population Stratification Methods
Dependency-Free Access to PNG Image Files
Genome-Wide Association Analysis of a Biomarker Accounting for
Limit of Detection
Limit of Detection Imputation for Single-Pollutant Models
Linear Model Fitting with LOD Covariates
A Fast and Lightweight Logging System for R, Based on 'log4j'
Log File Analysis in International Large-Scale Assessments
Relative Risk Regression Using the Log-Binomial Model
Log-Concave Density Estimation in Arbitrary Dimensions
Maximum Likelihood Estimation of a log-Concave Density Based on
Censored Data
Estimate a Log-Concave Probability Density from Iid Observations
Compute MLE of Log-Concave Density on R with Fixed Mode, and
Perform Inference for the Mode
Estimate a Log-Concave Probability Mass Function from Discrete
i.i.d. Observations
A Lightweight, Modern and Flexible Logging Utility
Salary Analysis by the Swiss Federal Office for Gender Equality
Binning Variables to Use in Logistic Regression
Identifying Interactions Between Binary Predictors
LOGICOIL: multi-state prediction of coiled-coil oligomeric
state
Logistic Regression with Misclassification in Dependent
Variables
Diagnostic Tests for Logistic Regression Models
Adjusted Relative Risk from Logistic Regression
Infer network based on binary arrays using regularized logistic
regression
Functions for the Logitnormal Distribution
Logit Models w/Preference & WTP Space Utility Parameterizations
Computing Log-Transformed Kernel Density Estimates for Positive
Data
Double log normal distribution functions
Log-Multiplicative Models, Including Association Models
Functions for the Lognormal Distribution
Natural Logarithms of the Gamma Function for Large Values
Logrank Test for Aggregated Survival Data
Routines for Logspline Density Estimation
Kernel Regression Smoothing with Local or Global Plug-in
Bandwidth
Recursive Partitioning for Longitudinal Data and Right Censored
Data Using Baseline Covariates
Package for Plotting Categorical Longitudinal and Time-Series
Data
Model-Based Clustering and Classification for Longitudinal Data
High Dimensional Longitudinal Data Analysis Using MCMC
Statistics for Long-Memory Processes (Book Jan Beran), and
Related Functionality
Sample Size Calculations for Longitudinal Data
Time-Dependent Prognostic Accuracy with Multiply Evaluated Bio
Markers or Scores
Recursive Partitioning of Longitudinal Data
Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
Leave One Out Kernel Density Estimates for Outlier Detection
Data Used to Illustrate 'Loon' Functionality
Automatically Create a 'Shiny' App Based on Interactive 'Loon'
Widgets
loop decomposition of weighted directed graphs for life cycle
analysis, providing flexbile network plotting methods, and
analyzing food chain properties in ecology
A Collection of Tools to Conduct Levins' Loop Analysis
Comprehensive Feedback Loop Detection in ODE Models
Integration and Analysis of Chromatin Loop Data
Tools for Survival Analysis and Data Science
Logistic Ordinal Regression Differential Item Functioning using
IRT
LOw Rand and sparsE Covariance matrix estimation
The Lorentz Transform in Relativistic Physics
Tools for Deriving Income Inequality Estimates from Grouped
Income Data
Imputation of High-Dimensional Count Data using Side Information
Missing Morphometric Data Simulation and Estimation
Runs Lotka's Law which is One of the Special Applications of
Zipf's Law
A Simple Way to Specify Symmetric, Block Diagonal Matrices
Detecting New Signals under Background Mismodelling
Lassoed Principal Components for Testing Significance of
Features
Local Polynomial Density Estimation and Inference
Nonparametric Smoothing of Laplacian Graph Spectra
Ecological Inference by Linear Programming under Homogeneity
Local polynomial estimators of intensity function or its
derivatives
Local Projections Impulse Response Functions
LP Nonparametric High Dimensional K-Sample Comparison
Local Partial Likelihood Estimation and Simultaneous Confidence
Band
Linear Parametric Models Applied to Hydrological Series
Nonparametric Estimation of Measurement Error Models
Merging Linkage Maps by Linear Programming
Modeler for linear programs (LP) and mixed integer linear
programs (MILP)
Calculates Power, Sample Size, or Detectable Effect for
Longitudinal Analyses
Linear Predictor Score, for Binary Inference from Multiple
Continuous Variables
Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
R Interface to 'lp_solve' Version 5.5.2.0
Learned Pattern Similarity and Representation for Time Series
LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series
Modelling
Lag Penalized Weighted Correlation for Time Series Clustering
Dose Response Signal Detection under Model Uncertainty
A Package for Processing Lexical Response Data
Estimate and Test Exponential vs. Pareto Distributions
Sources an R "Module" with Caching & Encapsulation, Returning
Exported Vars
Different Types of Estimators to Deal with Multicollinearity
Fitting Linear Quantile Regression Mixed Models with
Relationship Matrix
Power and Sample Size Calculation for Non-Proportional Hazards
A Likelihood Ratio Test Accounting for Genetic Heterogeneity
Locally Stationary Two-Dimensional Wavelet Process Estimation
Scheme
A Multiscale Test of Spatial Stationarity for LS2W Processes
Applied Latent Semantic Analysis (LSA) Functions
Daten, Beispiele und Funktionen zu 'Large-Scale Assessment mit
R'
Functions to Facilitate the Simulation of Large Scale Assessment
Data
Least-Squares Bilinear Clustering for Three-Way Data
Bandwidth Selection for Level Sets and HDR Estimation
Local Statistical Complexity - Automatic Pattern Discovery in
Spatio-Temporal Data
Interface Tools for LSD Simulation Results Files
Sensitivity Analysis Tools for LSD Simulations
Solving Least Squares or Quadratic Programming Problems under
Equality/Inequality Constraints
Semi-Confirmatory Structural Equation Modeling via Penalized
Likelihood or Least Squares
Estimation of the log Likelihood of the Saturated Model
American options pricing with Least Squares Monte Carlo method
Value American and Real Options Through LSM Simulation
Nonparametric Estimation and Inference Procedures using
Partitioning-Based Least Squares Regression
Lysate and Secretome Peptide Feature Plotter
Linear Splines with Convenient Parametrisations
Classification using LS-PLS for Logistic Regression
Companion to "Learning Statistics with R"
The Accelerated Failure Time Model to Right Censored Data Based
on Least-Squares Principle
Land Surface Temperature Retrieval for Landsat 8
Estimation of Low Rank Plus Sparse Structured Vector
Auto-Regressive (VAR) Model
Model for Semisupervised Text Analysis Based on Word Embeddings
Simulation-Based Bayesian Inference for Latent Traits of Item
Response Models
Left-Truncated Mixtures of Gamma, Weibull, and Lognormal
Distributions
Longitudinal Targeted Maximum Likelihood Estimation
LTPD and AOQL Plans for Acceptance Sampling Inspection by
Variables
Ensemble Methods for Survival Data with Time-Varying Covariates
Survival Trees to Fit Left-Truncated and Right-Censored and
Interval-Censored Survival Data
Ridge and Liu Estimates based on LTS (Least Trimmed Squares)
Method
Sparse Principal Component Based on Least Trimmed Squares
Lightweight Sparklines for a LaTeX Document
Likelihood Inference from Case-Control Data under Covariate
Assumptions
Package to Download and Create the DB of LUCAS Data Harmonized
Printing Floating Point Numbers in a Human-Friendly Format
Latent Unknown Clustering with Integrated Data
Light Use Efficiency Model to Estimate Biomass and YIELD with
and Without Vapour Pressure Deficit
Comprehensive Luminescence Dating Data Analysis
Lunar Phase & Distance, Seasons and Other Environmental Factors
Latent Variable Gaussian Process Modeling with Qualitative and
Quantitative Input Variables
Stochastic EM Algorithms for Latent Variable Models with a
High-Dimensional Latent Space
An Automated Approach to Evaluating Dose-Effect Experiments
Following Litchfield and Wilcoxon (1949)
Simulate Evapotranspiration and Soil Moisture with the SVAT
Model LWF-Brook90
Bindings to Selected 'liblwgeom' Functions for Simple Features
Accurate Estimation of Clonal Coincidences and Abundances from
Biological Replicates
Exact Spike Train Inference via L0 Optimization
Movement to Behaviour Inference using Random Forest
Multi-Modal Similarity Matrix Factorization for Integrative
Multi-Omics Data Analysis
Multi-Modal Similarity Matrix Joint Factorization
Package About Data Manipulation in Pure Base R
Analysis of Alternative Polyadenylation Using 3' End-Linked
Reads
Maximum Approximate Bernstein/Beta Likelihood Estimation
Binary and Multiclass Boosting Algorithms
Multi-Armed Bayesian Ordinal Utility-Based Sequential Trial
Mediation Analysis of Causality under Confounding
Molecular Acquisition, Cleaning, and Evaluation in R 'MACER'
Retrieve Data from MacLeish Field Station
Class prediction based on microarray data and clinical
parameters
Measures of Uncertainty for Model Selection
Mediation Analysis for Count and Zero-Inflated Count Data
'MADGRAD' Method for Stochastic Optimization
Fast Data Aggregation, Modification, and Filtering with Pipes
and 'data.table'
Automatic Differentiation of Multivariate Operations
MHC Allele-Based Differencing Between Populations
May All Data be Reproducible and Transparent (MADRaT) *
A Flexible Microarray Data Simulation Model
Data Class and Tools for Handling Spatial-Temporal Data
Mixed Model Association Test for GEne-Environment Interaction
Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick
Support
Magic Functions to Obtain Results from for Loops
Advanced Graphics and Image-Processing in R
GUI Tools for Interactive Image Processing with 'magick'
R-Client for 'Magma' of the 'UCSF Mount Etna Data Library'
A Pipeline for Meta-Genome Wide Association
Implements the O'Connell-Dobson-Schouten Estimators of Agreement
for Multiple Observers
Mail Merge Using R Markdown Documents and 'gmailr'
Creates a Friendly User Interface for Emails Sending in 'shiny'
R Interface to Access the 'Majestic' API
k-Means Algorithm with a Majorization-Minimization Method
Create Dummy Variables from Categorical Data
Intuitive Construction of Joint Priors for Variance Parameters
Creates an empty package framework for the LCFD format
Exploring and Testing the Toolchain and System Libraries
Machine Learning Assisted Network Inference
An R Interface to Open-Access Malaria Data, Hosted by the
'Malaria Atlas Project'
Quantitative Analysis of Mass Spectrometry Data
MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis
A wrapper around the Java machine learning tool MALLET
Providing the Kubernetes-Like Functions for the Non-Kubernetes
Cloud Service
Matrix Analysis and Normalization by Concordant Information
Enhancement
Multivariate Analysis for Neuroimaging Data
Multiple Allocation Model for Actor-Event Networks
Interactive Q-Q and Manhattan Plots Using 'plotly.js'
Access and Process Data and Documents of the Manifesto Project
An R Interface to the 'ROPTLIB' Library for Riemannian Manifold
Optimization
Add Even More Interactivity to Interactive Charts
Manly Mixture Modeling and Model-Based Clustering
Tools for Normalizing and Comparing ChIP-seq Samples
Resampling-Based Analysis of Multivariate Data and Repeated
Measures Designs
Multiple Testing Procedures of Cox (2011) and Wong and Cox
(2007)
Tools for Matrix Algebra, Optimization and Inference
Mapping Markers to the Nearest Genomic Feature
MAP-Bayesian Estimation of PK Parameters
Tools for Plotting Canadian Choropleth Maps and Choropleth
Alternatives
China Administrative Divisions Geospatial Shapefile Data
Interactive Maps Using 'Mapbox GL JS' and 'Deck.gl'
Multivariate Analysis of Variance Panel, PERMANOVA and Bayesian
Interactive Editing of Spatial Data in R
Mapping Smoothed Effect Estimates from Individual-Level Data
Automatic Download, Linking, Manipulating Coordinates for Maps
Functions for Transforming Categorical Variables
Producing Administrative Boundary Map with Additional Features
Embedded
'sf'-Compatible Interface to 'Google Maps' APIs
Print Maps, Draw on Them, Scan Them Back in
Local Adaptation and Evaluation of Digital Soil Maps
Geographic Display of Survey Data Statistics
Mapping, pruning, and graphing tree models
Interactive Viewing of Spatial Data in R
Multiplicative AR(1) with Seasonal Processes
Migration and Range Change Estimation in R
Estimation of Meiotic Recombination Rates Using Marey Maps
Approximate Marginal Inference for Regression-Scale Models
Marginal Effects, Marginal Means, Predictions, and Contrasts
Render Markdown with the C Library 'Sundown'
Shiny Module for a Markdown Input with Result Preview
Mark-Recapture Analysis for Survival and Abundance Estimation
Marker Gene Detection via Penalized Principal Component Analysis
Market Matching and Causal Impact Inference
Tidy Calculation of Marketing Metrics Plus Quick Analysis
Markov Chain Models for Phylogenetic Trees
Easy Handling Discrete Time Markov Chains
Markov Chain-Based Cost-Optimal Control Charts
Methods for Checking the Markov Condition in Multi-State
Survival Data
Statistical Significance of the Markowitz Portfolio
Multivariate Analysis Based on Relative Likelihoods
Import, Plot and Analyze Bathymetric and Topographic Data
A Parallelized General-Purpose Optimization Based on
Marquardt-Levenberg Algorithm
Simulation, Estimation, Model Selection and Forecasting for MARX
Models
Mandallaz' Model-Assisted Small Area Estimators
Masking, Unmasking and Restoring Confidential Data
Build Data Structures for Common Statistical Analysis
Support Functions and Datasets for Venables and Ripley's MASS
Body Mass Estimation Equations for Vertebrates
ML and MCMC Methods for Pedigree Reconstruction and Analysis
Model-Averaged Tail Area (MATA) Confidence Interval and
Distribution
Multivariate and Propensity Score Matching with Balance
Optimization
Nonparametric Preprocessing for Parametric Causal Inference
Combining Matching and Linear Regression for Causal Inference
Optimal Multilevel Matching using a Network Algorithm
Pattern Matching and Enumerated Types in R
Matching and Weighting Multiply Imputed Datasets
A Code Converter from the Matlab/Octave Language to R
Support for the 'Mathpix' API (Image to 'LaTeX')
Measuring Association and Testing Independence Efficiently
An Interface for MATLAB using System Calls
Matrix Functions for Teaching and Learning Linear Algebra and
Multivariate Statistics
Matrix Clustering with Gaussian and Manly Mixture Models
Sparse and Dense Matrix Classes and Methods
Data.frame-Like Operations on Sparse and Dense Matrix Objects
Collection of Functions for Matrix Calculations
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix
Operations
Normalized Laplacian Matrix and Laplacian Map
Penalized Matrix-Normal Linear Discriminant Analysis
Model-Based Clustering via Matrix-Variate Mixture Models
Modelling with Sparse and Dense Matrices
Matrix-Based Partial Least Squares Estimation
Simulations of Matrix Variate Distributions
Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Tests of Matrix Structure for Construct Validation
Fast Statistical Hypothesis Tests on Rows and Columns of
Matrices
Modern Calibration Functions for the Modern Analog Technique
(MAT)
Clustering with Matrix Gaussian and Matrix Transformation
Mixture Models
Decision Models with Multi Attribute Utility Theory
Three methods to identify differentially expressed gene sets,
ordinary least square test, Multivariate Analysis Of Variance
test with n contrasts and Random forest
Exact max-type Cochran-Armitage trend test(CATT)
The Group Sequential Max-Combo Test for Comparing Survival
Curves
Selecting the Best Set of Relevant Environmental Variables along
with the Optimal Regularization Multiplier for Maxent Niche
Modeling
Space-Filling Design under Maximin Distance
Inference for Maximin Effect in High-Dimensional Settings
Maximum Likelihood Estimation and Related Tools
Model Species Distributions by Estimating the Probability of
Occurrence Using Presence-Only Data
Maximum Matching for General Weighted Graph
Fitting 'Maxent' Species Distribution Models with 'glmnet'
Approximate Maximisation of Nestedness in Bipartite Graphs
Orthogonal Data Projections with Maximal Skewness
Manage Spatial Metadata for Known Locations
Thematic Plots for Mazama Spatial Datasets
Spatial Data Download and Utility Functions
Monotonic Association on Zero-Inflated Data
Multiblock Exploratory and Predictive Data Analysis
Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and
Destruction Rate Modelling
Multivariate Bias Correction of Climate Model Outputs
Companion Package for the Book "Model-Based Clustering and
Classification for Data Science" by Bouveyron et al. (2019,
ISBN:9781108644181).
Moment-Based Estimation for Hierarchical Models
Spatial Designs for Ecological and Environmental Surveys
Run Time-Course Model-Based Network Meta-Analysis (MBNMA) Models
Reading, Extracting, and Converting an Mbox File into a Tibble
Integrating Multiple Biomarker Responses in Aquatic Organisms
using Effect Size, Statistical Uncertainty, and Ecological
Relevance
Median Bias Reduction in Binomial-Response GLMs
Multivariate Bayesian Sparse Group Selection with Spike and Slab
Multivariate Bayesian Model with Shrinkage Priors
Multivariate Bayesian Structural Time Series
Bayesian Variable Selection Methods for Multivariate Data
A Monte Carlo Based Heterogeneity Test for Meta-Analysis
Tools for Two-Dimensional Monte-Carlo Simulations
Translates information from netcdf files with MC2 output into
inter-PVT transitions
Monte Carlo Simulation for Surface Backscattering
Monte Carlo Based Tests for the Behrens Fisher Problem as an
Alternative to Welch's t-Approximation
Matrix Computation Based Identification of Prime Implicants
Creates the MCC-F1 Curve and Calculates the MCC-F1 Metric and
the Best Threshold
Analysis of Matched Case Control Data with a Mismeasured
Exposure that is Accompanied by Instrumental Variables
Support for the Multicriteria Decision Aiding Process
Multi-Criteria Decision Making Methods for Crisp Data
Maximum Likelihood Estimation for Generalized Linear Mixed
Models
Machine Coded Genetic Algorithms for Real-Valued Optimization
Problems
Warnes and Raftery's MCGibbsit MCMC diagnostic
Multivariate Covariance Generalized Linear Models
Global optimization using Monte Carlo and Quasi Monte Carlo
simulation
Monte Carlo Hypothesis Tests with Sequential Stopping
Multiplicative Competitive Interaction (MCI) Model
Estimating the Minimal Clinically Important Difference
Estimating Conditional Auto-Regressive (CAR) Models using Monte
Carlo Likelihood Methods
Multinomial Logit Models, with or without Random Effects or
Overdispersion
Gaussian Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Estimating and Testing Intergenerational Social Mobility Effect
Bayesian Analysis of Multivariate Counts Data in DNA
Metabarcoding and Ecology
Posterior Distribution of Extreme Value Models in R
Ensemble Sampler for Affine-Invariant MCMC
Hybrid Markov Chain Monte Carlo using Gaussian Processes
Functions to Store, Manipulate and Display Markov Chain Monte
Carlo (MCMC) Output
Precision of Discrete Parameters in Transdimensional MCMC
Markov Chain Monte Carlo Small Area Estimation
Prepare MCMCtree Analyses and Plot Bayesian Divergence Time
Analyses Estimates on Trees
Tools to Visualize, Manipulate, and Summarize MCMC Output
A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem
Multiple Criteria Optimization Algorithms and Related Functions
Objects and Methods for Multi-Companion Matrices
Conjoint Analysis through Averaging of Multiple Analyses
Multiple Comparisons Using Normal Approximation
A Simplified Interface for Running Commands on Parallel
Processes
Design and Analysis of Dose-Finding Studies
A Supplement to the 'DoseFinding' Package for the General Case
Simulation-Based Design and Analysis of Dose-Finding Trials
Testing Generalized Linear Hypotheses for Generalized Linear
Model Parameters by Profile Deviance
Determine the Optimal Number of Clusters
Functions for Monte Carlo Methods with R
Visualize Results of Statistical Hypothesis Tests
Tools to Process the Munich ChronoType Questionnaire (MCTQ)
Selecting Bandwidth for Kernel Density Estimator with Minimum
Distance Method
Produces Markdown Log File with a Built-in Function Call
Mixture and Flexible Discriminant Analysis
Inferring Causal Network from Mixed Observational Data Using a
Directed Acyclic Graph
Multivariate Data Analysis for Chemometrics
Measuring the Difference Between Two Empirical Distributions
Missing Data Imputation Using Gaussian Copulas
Multivariate Double Hierarchical Generalized Linear Models
Multi-Dimensional MA Normalization for Plate Effect
Molecular Detection Mapping and Analysis Platform
Inference of Quadratic Functional for Moderate-Dimensional OLS
Graph-Constrained Regression with Enhanced Regularization
Parameters Selection
Improved Score Tests for Generalized Linear Models
Functions for Analysis of Data with General Recognition Theory
High Density Genetic Linkage Mapping using Multidimensional
Scaling
Searching for Optimal MDS Procedure for Metric and
Interval-Valued Data
Interactive Document for Working with Multidimensional Scaling
and Principal Component Analysis
Complement to 'Modern Data Science with R'
A Computationally Efficient Mean Shift Implementation
Make Quick Descriptive Tables for Continuous Variables
Send Data from R to the Measurement Protocol
Performance Measures for Statistical Learning
Detection and Control of Tree-Ring Widths on Scanned Image
Sections
Maximum Entropy Bootstrap for Time Series
Fit the Mixture of Experts Latent Position Cluster Model to
Network Data
Measurement Error Correction in Linear Models with a Continuous
Outcome
Multi Calculator to Compute Scores of Adherence to Mediterranean
Diet
Bayesian Methods for Identifying the Most Harmful Medication
Errors
Extraction of Medication Information from Clinical Text
Flexible Mediation Analysis Using Natural Effect Models
Efficient Simulation-Based Power and Sample Size Calculations
for a Broad Class of Late-Stage Clinical Trials
Mediation Analysis Based on the Product Method
Simulation-Based Sensitivity Analysis for Causal Mediation
Studies
Medical Risk and Comorbidity Tools for ICD-9-CM Data
Tools for Obtaining and Cleaning Medicare Public Use Files
Prints a Random Quote from Marcus Aurelius' Book Meditations
Morphological and Structural Features of Medicinal Leaves
Simple Mediation and Moderation Analysis
Access and Search MedRxiv and BioRxiv Preprint Data
Mixtures of Exponential-Distance Models with Covariates
Linear Mediation Analysis for Complex Surveys Using Balanced
Repeated Replication
Analysis of Data with Measurement Error Using a Validation
Subsample
Multivariate Data Handling in Ecology and Biogeography
Multivariate Data Handling with S4 Classes and Sparse Matrices
Accessing and Processing a 'Mega2' Genetic Database
Multiscale Clustering of Geometrical Network
Interactive model exploration using GGobi
Matching Event Data by Location, Time and Type
The Moving Epidemic Method Web Application
Spatial Pattern Detection in Genetic Distance Data Using Moran's
Eigenvector Maps
Management of Survey Data and Presentation of Analysis Results
In-Memory Caching for Repeated Computations
Testing for Structural Breaks under Long Memory and Testing for
Changes in Persistence
R Markdown and Bookdown Templates to Publish Documents
A 'rmarkdown' Template that Can be Highly Customized
Quantifying Ecological Memory in Palaeoecological Datasets and
Other Long Time-Series
Data Sets from Mixed-Effects Models in S
Creation of Empirical Density Functions Based on Multivariate
Data
Clustering and Visualizing Distance Matrices
Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models
Mixed Effects Regression for Linear, Non-Linear and User-Defined
Models
Tools for Analyzing Mixed Effect Regression Models
Bayesian Regression with Meshed Gaussian Processes
Conveniently Issue Messages, Warnings, and Errors
Evaluating and Improving Matched Samples in Observational
Studies
Meta-Analyses for Simultaneously Estimating Individual Means
Meta-Analysis for Diagnostic Test Studies
An Interactive Visualisation of Meta-Analysis as a Physical
Weighing Machine
Meta-analysis of genome-wide SNP association results
BLUE for Combining Location and Scale Information in a
Meta-Analysis
Bayesian Model Averaging for Random and Fixed Effects
Meta-Analysis
Probabilistic Latent Variable Models for Metabolomic Data
Datasets and Functions for Reproducing Meta-Analyses
A Biomarker Validation Approach for Classification and
Predicting Survival Using Metabolomics Signature
Annotation of Metabolites from Liquid Chromatography-Mass
Spectrometry Data
Basic Functions to Investigate Metabolomics Data Matrices
Normalize Metabolomic Data using QC Signal
Meta-CART: A Flexible Approach to Identify Moderators in
Meta-Analysis
Detection of Low-Quality Peaks in Untargeted Metabolomics Data
Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data
Analysis of the 'Elements of Metacommunity Structure'
Visualize 'Confounder' Control in Meta-Analyses
Evaluate Periodicity in Large Scale Data
Annotate Mass over Charge Values with Databases and Formula
Prediction
Extract and Summarise Data from Published Figures
Tools to Read, Analyze and Visualize Metadynamics HILLS Files
from 'Plumed'
Tools to Read, Analyze and Visualize Metadynamics 3D HILLS Files
from 'Plumed'
Automated Intuitive Package for Meta-Ensemble Learning
Metapopulation simulations for conserving salmon through
portfolio optimization
Exploring Heterogeneity in Meta-Analysis using Random Forests
Fused Lasso Approach in Regression Coefficient Clustering
Meta-Analysis of Generalized Additive Models
Comprehensive Research Synthesis Tools for Systematic Reviews
and Meta-Analysis
An Implementation of Flower Pollination Algorithm in R
Easily Download Data and Metadata from 'DataONE'
Landscape and Range Expansion Simulation
Likelihood Inference in Meta-Analysis and Meta-Regression Models
Metagenomics Longitudinal Differential Abundance Method
Microbiome Data Analysis & Meta-Analysis with GAMLSS-BEZI &
Random Effects
Meta-Analysis of Diagnosis and Prognosis Research Studies
Bayesian Mixture Analysis for Metagenomic Community Profiling
Meta-Analysis of Studies with Non-Statistically Significant
Unreported Effects
Bayesian Meta-Analysis and Network Meta-Analysis
Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)
Creates CrossHairs Plots for Meta-Analyses
Regression Models for Meta Signal Detection Theory
Meta-Analysis using Structural Equation Modeling
Statistical Methods for Sensitivity Analysis in Meta-Analysis
Subtracting Summary Statistics of One or more Cohorts from
Meta-GWAS Results
Meta-Analysis of a Single Survival Curve
HTML Metadata Tags for 'R Markdown' and 'Shiny'
Meta-analysis for Classification Data and Correction to
Imperfect Reference
Utility Functions for Conducting and Interpreting Meta-Analyses
Computing Variances and Covariances, Visualization and Missing
Data Solution for Multivariate Meta-Analysis
Forest Plots, Funnel Plots, and Visual Funnel Plot Inference for
Meta-Analysis
Meta-Analytical Implementation to Identify Who Benefits Most
from Treatments
Spatio-Temporal Analysis and Mapping of Meteorological
Observations
Mixture-of-Experts Modeling for Complex Non-Normal Distributions
Access to Spanish Meteorological Stations Services
Fitting and Plotting Tools for the Maximum Entropy Theory of
Ecology (METE)
A Homogeneity Test under the Presence of Measurement Errors
Meth27QC: sample quality analysis, and sample control analysis
Analysis of Agreement in Method Comparison Studies
Identify and Rank CpG DNA Methylation Conservation Along the
Human Genome
Detection of Differentially Methylated Regions using
MethylCap-Seq Data
Statistical Methods for Normalizing Metabolomics Data
Separate Metabolites into Likely Measurement Artifacts and True
Metabolites
Tools for Easier Analysis of Meteorological Fields
Create Interactive Charts with the JavaScript 'MetricsGraphics'
Library
Weighted Metrics, Scoring Functions and Performance Measures for
Machine Learning
Washington Metropolitan Area Transit Authority API
Find, Map, and Gather Environmental Data and Metadata
A Shiny App for Sample Size Estimation in Metabolomic
Experiments
Interface with the Meteo France Synop Data API
A Fixed Memeory Moving Expanding Window Average
Mexican Politics-Inspired Color Palette Generator
Identifying Master Gene Regulators from Gene Expression and
DNA-Binding Data
Fast Covariance Estimation for Multivariate Sparse Functional
Data
Compute and Illustrate the Multiple Facets of Functional
Diversity
Leadership-Inference Framework for Multivariate Time Series
Multivariate Functional Principal Component Analysis for Data
Observed on Different Dimensional Domains
Moder-Free Sure Independent Screening Procedures
The Multiple Filter Test for Change Point Detection
Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR)
Processes
Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
Visualisations for Generalized Additive Models
Marginal Analysis of Misclassified Longitudinal Ordinal Data
Multivariate Response Generalized Linear Models
Model Averaging for Multivariate GLM with Null Models
Estimating Time-Varying k-Order Mixed Graphical Models
Missingness Aware Gaussian Mixture Models
mgpd: Functions for multivariate generalized Pareto distribution
(MGPD of Type II)
API Client for the MG-RAST Server of the US DOE KBase
A Matrix-Free Multigrid Preconditioner for Spline Smoothing
Safe, Multiple, Simultaneous String Substitution
Gene set analysis based on GSZ-scoring function and asymptotic
p-value
GWR and MGWR with Spatial Autocorrelation
General Markov Chain Monte Carlo for Bayesian Inference using
adaptive Metropolis-Hastings sampling
Multivariate Survival Function Estimation and Regression
Analysis of MHC Data in Non-Model Species
Multilevel Hidden Markov Models Using Bayesian Estimation
Inference for Hidden Markov and Semi-Markov Models
Multiple Hypothesis Test Based on Distribution of p Values
Multiple Hypotheses Testing for Discrete Data
Multiple Hypotheses Testing for Multiple Families/Groups
Structure
Bayesian Model Selection in Logistic Regression for the
Detection of Adverse Drug Reactions
Missing Data Imputation and Model Checking
A Modular, Integrated Approach to Maximum Entropy Distribution
Modeling
Multivariate Imputation by Chained Equations
Some Additional Multiple Imputation Functions, Especially for
'mice'
Data and Statistical Analyses after Multiple Imputation
Demand Analysis with the Almost Ideal Demand System (AIDS)
Analysis with the Constant Elasticity of Substitution (CES)
Function
Symmetric Normalized Quadratic Profit Function
Fast Imputations Using 'Rcpp' and 'Armadillo'
Multiple Imputation by Chained Equations with Multilevel Data
Multiple Imputation by Chained Equations with Random Forests
The Works (in Luxembourguish) of Michel Rodange
Multivariate Independent Comparison of Observations
Promotion Time Cure Model with Mis-Measured Covariates
Do 16s Data Analysis and Generate Figures
Statistical Methods for Microbiome Compositional Data
Methods for Taxonomic Classification of Prokaryotes
Entity Resolution with Random Partition Priors for
Microclustering
Utilities for Official Spanish Microdata
Microbial Community Ecology Data Analysis
Linked Micromap Plots for General U. S. and Other Geographic
Areas
Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel'
Finding Optimal Microsampling Designs for Non-Compartmental
Pharmacokinetic Analysis
Sequence Error Filtering Pipeline for FFPE Samples
Breakdown a Monolithic Application to a Suite of Services
Discrete Event Simulation in R and C++, with Tools for
Cost-Effectiveness Analysis
Interface to the 'Microsoft 365' Suite of Cloud Services
Microbiota STability ASsessment via Iterative cluStering
Synthetic Control Methods with Micro- And Meso-Level Data
The Computing of Monotonic Spline Bases and Constrained
Least-Squares Estimates
Estimation and Prediction Methods for High-Dimensional Mixed
Frequency Time Series Data
Multiple Imputation by Distance Aided Donor Selection
Microcluster-Based Detector of Anomalies in Edge Streams
Nearly Exact Sample Size Calculation for Exact Powerful
Nonrandomized Tests for Differences Between Binomial
Proportions
Multiples Comparisons Procedures Based on Studentized Midrange
and Range Distributions
Multiple Imputation for Exploratory Factor Analysis
Methods for the Indirect Estimation of Bilateral Migration
Multimodal and Multilevel Network Analysis
Create Credit State Migration (Transition) Matrices
Graphical User Interface to the 'mi' Package
Learning Causal or Non-Causal Graphical Models Using Information
Theory
Multiple Imputation for Interval Censored Data
IPW and Mean Score Methods for Time-Course Missing Data
Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
User-Friendly R Package for Supervised Machine Learning
Pipelines
MIcrosimulation Lung Cancer (MILC) model
Association Tests for Microbial Lineages on a Taxonomic Tree
Mixed Logistic Regression for Genome-Wide Analysis Studies
(GWAS)
Multiple-Instance Logistic Regression with LASSO Penalty
Main Effects and Interactions in Mixed and Incomplete Data
Mixture summary method for multiple imputation
Algorithm to Compute Monitor Independent Movement Summary Unit
(MIMS-Unit)
Calculate MIMS Dissolved Gas Concentrations Without Getting a
Headache
Determining the Minimal Background Area for Species Distribution
Models
Multivariate Model Based Inference for Domains
Data sets included in Utts and Heckard's Mind on Statistics
Extract and Analyze Median Molecule Intensity from 'citrus'
Output
A Bayesian Design for Minimum Effective Dosing-Finding Trial
Maximal Information-Based Nonparametric Exploration for Variable
Analysis
Implementation of the Well-Known Game to Clear Bombs from a
Given Field (Matrix)
Create a Mini Version of CRAN Containing Only Selected Packages
Create Simple Yet Powerful HTML Documents with Light Weight CSS
Frameworks
Implementation of the minMSE Treatment Assignment Method for One
or Multiple Treatment Groups
R Interface to the Levenberg-Marquardt Nonlinear Least-Squares
Algorithm Found in MINPACK, Plus Support for Bounds
Derivative-free optimization algorithms by quadratic
approximation
Encode "License-Plates" from Sequences and Decode Them Back
MINimal VALidation for Stoichiometric Reactions
Multidimensional Iterative Proportional Fitting and Alternative
Models
Mutant Identification through Probabilistic High throughput
Enabled NOrmalization
An Open-Source Tool for Visualization of Climate Mitigation
Scenarios
Left-Censored Recurrent Events Survival Models
Measurement Invariance Assessment Using Random Effects Models
and Shrinkage
Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples
Computerized Adaptive Testing with Multidimensional Item
Response Theory
Joint Maximum Likelihood Estimation for High-Dimensional Item
Factor Analysis
SVD-Based Estimation for Exploratory Item Factor Analysis
Linear Regression and Logistic Regression with Missing
Covariates
Miscellaneous Useful Functions Including LaTeX Tables, Kalman
Filtering and Development Tools
Misclassified Interval Censored Time-to-Event Data
Computation of Generalized Linear Models with Misclassified
Covariates Using Side Information
Miscellaneous Functions for the Correlation Coefficient
Variable Selection for Multiply Imputed Data
Multiple Imputation with Sequential Penalized Regression
Microbiome Based Sum of Powered Score (MiSPU) Tests
Statistical Analysis of Misreporting on Sensitive Survey
Questions
Intuitive Missing Data Imputation Framework
Simulating and Analyzing Time to Event Data in the Presence of
Population Mortality
Comparing Observed and Imputed Values under MAR and MCAR
Nonparametric Missing Value Imputation using Random Forest
Missing Outcome Data in Health Economic Evaluation
Handling Missing Values with Multivariate Data Analysis
Handling Missing Data in Stochastic Block Models
Self-Organizing Maps with Built-in Missing Data Imputation
Mixed effects Score Test for continuous outcomes
Data Sets, Functions and Examples from the Book: "Modern
Industrial Statistics" by Kenett, Zacks and Amberti
Tools for Multiple Imputation in Multilevel Modeling
Tools for Multiple Imputation of Missing Data
Cybersecurity MITRE Standards Data and Digraphs
Implementing the MI-Wilson Confidence Interval
Multiple Imputation Using Weighted Quantile Sum Regression
Estimation/Multiple Imputation for Mixed Categorical and
Continuous Data
Multivariate Normal Mixture Models and Mixtures of Generalized
Linear Mixed Models Including Model Based Clustering
Clustering and Classification using Model-Based Mixture Models
Mixed Effects Cumulative Link and Logistic Regression Models
Mixture Model for the Deconvolution of Thermal Decay Curves
Estimation of Order of Mixture Distributions
Cluster High Dimensional Categorical Datasets
Sparse Canonical Correlation Analysis for High-Dimensional Mixed
Data
Tests of Randomness and Tests of Independence
Tools for Discrete Multivariate Mixed Membership Models
Statistical Tools for the Analysis of Psychophysical Data
Estimation Methods for Stochastic Differential Mixed Effects
Models
A Mixed-Effects Model for Analyzing Cluster-Level Non-Ignorable
Missing Data
Design and Analysis of Mixture Experiments
Evaluation of the FIM in NLMEMs using MCMC
Model Based Clustering, Classification and Discriminant Analysis
Using the Mixture of Generalized Hyperbolic Distributions
Genetics and Independence Testing of Mixed Genetic Panels
Omics Data Integration Using Kernel Methods
Simulated Maximum Likelihood Estimation of Mixed Logit Models
for Large Datasets
Mixed Model ANOVA and Statistics for Education
Classification with Matrix Variate Normal and t Distributions
An Extended Mixed-Effects Framework for Meta-Analysis
Mixed Poisson Regression for Overdispersed Count Data
Finite Mixture Modeling for Raw and Binned Data
Plotting and Average Theta Functions for Multiple Class Mixed
Rasch Models
Functions to Fit Mixtures of Regressions
A Random-Forest-Based Approach for Imputing Clustered Incomplete
Data
Mixtures of Multivariate Shifted Asymmetric Laplace (SAL)
Distributions
Forensic Genetics DNA Mixture Separation
Simulating Data to Study Performance of Clustering Algorithms
Fitting Finite Mixture of Scale Mixture of Skew-Normal
Distributions
Mixtures of Power Exponential and Skew Power Exponential
Distributions for Use in Model-Based Clustering and
Classification
Sequential Quadratic Programming for Fast Maximum-Likelihood
Estimation of Mixture Proportions
DE Analysis of RNA-Seq Data by Mixtures of NB
Tools for Analyzing Finite Mixture Models
Curve Fitting and Mixture Toxicity Assessment
Modelling Continuous Report Visual Short-Term Memory Studies
Mixture Models for Clustering and Classification
Robust Model-Based Clustering for Data Sets with Missing Values
at Random
Mixture Regression Models for Left-Truncated and
Interval-Censored Data
MixTwice--a Package for Large-Scale Hypothesis Testing
Multi-Species sIZE Spectrum Modelling in R
2D and 3D movement-based kernel density estimates (MKDEs)
Kinetic Evaluation of Chemical Degradation Data
A Modern K-Means (MKMeans) Clustering Algorithm
Power Analysis and Sample Size Calculation
Efficient multi-level k-circulant supersaturated designs
Maximum Likelihood Inference on Multi-State Trees
Variational Autoencoder Models for IRT Parameter Estimation
Abstract Classes for Building 'scikit-learn' Like API
Major League Baseball Player Statistics Calculator
Latent Class Item Response Theory (LC-IRT) Models under
Within-Item Multidimensionality
Interactive Document for Working with Discriminant Analysis
Exploratory Data Analysis and Manipulation of Multi-Label Data
Sets
R Ultimate Multilabel Dataset Repository
Expected/Observed Fisher Information and Bias-Corrected Maximum
Likelihood Estimate(s)
Machine learning algorithms with unified interface and confusion
matrices
Computation of the MLE for bivariate (interval) censored data
Maximum Likelihood Estimates of Gaussian Processes
Multilevel Exponential-Family Random Graph Models
Iterative Proportional Fitting Algorithms for Nested Structures
Datasets for Use with Salvan, Sartori and Pace (2020)
Independent Component Analysis using Maximum Likelihood
Maximum Likelihood Estimation of DNA Methylation and
Hydroxymethylation Proportions
ML estimation under multivariate linear mixed models with
missing values
Model Selection in Multivariate Longitudinal Data Analysis
Estimating Frequencies, Prevalence and Multiplicity of Infection
Examples from Multilevel Modelling Software Review
Bayesian Model Averaging for Multinomial Logit Models
'Rcpp' Integration for the 'mlpack' Library
Maximum Likelihood Estimation of the Niche Preemption Model
Multi-Label Prediction Using Gibbs Sampling (and Classifier
Chains)
Algorithms for Class Distribution Estimation
Analysis and Visualisation of Benchmark Experiments
Collection of Machine Learning Data Sets for 'mlr3'
Filter Based Feature Selection for 'mlr3'
Preprocessing Operators and Pipelines for 'mlr3'
Probabilistic Supervised Learning for 'mlr3'
Support for Spatial Objects Within the 'mlr3' Ecosystem
Spatiotemporal Resampling Methods for 'mlr3'
Easily Install and Load the 'mlr3' Package Family
Composable Preprocessing Operators and Pipelines for Machine
Learning
Model-Based Optimization for 'mlr3' Through 'mlrMBO'
Bayesian Optimization and Model-Based Optimization of Expensive
Black-Box Functions
Interactive Application for Working with Multiple Linear
Regression
Efficient Estimation of Bayesian SBMs & MLSBMs
Use the MLS Junk Generator Algorithm to Generate a Stream of
Pseudo-Random Numbers
Most Likely Transformations: Documentation and Regression Tests
A Stochastic Block Model for Multilevel Networks
Mean Length-Based Estimators of Mortality using TMB
Single-Sample Classifier of Medulloblastoma Subtypes for
Medulloblastoma Patient Samples, Mouse Models, and Cell Lines
Gene Expression Datasets for the 'MM2S' Package
Inference of Linear Mixed Models Through MM Algorithm
Multiple Mediation Analysis for Big Data Sets
Data for Mathematical Modeling and Applied Calculus
Mathematical Morphology in Any Number of Dimensions
Arbitrary Dependency Mixed Multivariate Bayesian Models
Minimal Multilocus Distance (MMD) for Source Attribution and
Loci Selection
Multivariate Multinomial Distribution Approximation and
Imputation for Incomplete Categorical Data
Robust Estimation of Copulas by Maximum Mean Discrepancy
Detecting Differentially Variable Genes Using the Mixture of
Marginal Distributions
Estimation of Multinormal Mixture Distribution
Fitting Markov-Modulated Linear Regression Models
Multivariate marginal models with shared regression parameters
Simultaneous Inference for Multiple Linear Contrasts in GEE
Models
Modern Measures of Population Differentiation
Implementation of Marker-Assisted Mini-Pooling with Algorithm
Monte-Carlo Methods for Prediction Functions
Various Similarity and Distance Metrics for Marked Point
Processes
Case Classification and Selection Based on Regression Results
Missing Multivariate Bayesian Variable Selection
Convert Dates to MMWR Day, Week, and Year
Clustering Data with Non-Ignorable Missingness using
Semi-Parametric Mixture Models
Diagnostic Tools for a Multivariate Negative Binomial Model
Easy Downloading Capabilities for the Members' Name Information
Service
Simulated Predicted Probabilities for Multinomial Logit Models
Interactive Shiny Presentation for Working with Multinomial
Logistic Regression
Multivariate Nonparametric Methods. An Approach Based on Spatial
Signs and Ranks
A Generator of Multivariate Non-Normal Random Numbers
The Multivariate Normal and t Distributions, and Their Truncated
Versions
MNREAD Parameters Estimation and Curve Plotting
Affine Invariant Tests of Multivariate Normality
Run Reports, Models, and Scripts from a Mobile Device
Calculates Transition Matrices and Mobility Indices
Models Bivariate Dependence and Produces Bivariate Return
Periods
Spatial Simulation and Scale-Dependent Analysis of Biodiversity
Changes
General Nonlinear Multivariate Finite Mixtures
Multi-Objective Optimization for Collecting Cluster Alternatives
Lightweight and Self-Contained Modules for Code Organization
Extraction of Bands from MODIS Surface Reflectance Product MOD09
NRT
A 'shiny' Module for Creating Charts of Various Types
Fit a Modified Connor-Mosimann Distribution to Elicited
Quantiles in Multinomial Problems
Multiscale Analysis for Density Functions
Stratified and Personalised Models Based on Model-Based Trees
and Forests
Estimation of Model-Based Predictions, Contrasts and Means
Data Sets Used Useful for Modeling Packages
Make Static HTML Website for Predictive Models
Classes and Methods for Training and Using Binary Prediction
Models
Model-free estimation of a psychometric function
A Framework for Creating, Managing and Training Multiple Caret
Models
Functions to Assess the Business Impact of Churn Prediction
Models
Compare Models with Cross-Validated Log-Likelihood
Modeling and Map Production using Random Forest and Related
Stochastic Models
Create Model Matrix and Save the Transforming Parameters
A Model Object Framework for Regression Analysis
Plots to Evaluate the Business Performance of Predictive Models
Modelling Functions that Work with the Pipe
Interactive Studio for Explanatory Model Analysis
Summary Tables and Plots for Statistical Models and Data:
Beautiful, Customizable, and Publication-Ready
Testing Infrastructure for Broom Model Generics
The Tidymodels Extension for Time Series Modeling
Ensemble Algorithms for Time Series Forecasting with Modeltime
Resampling Tools for Time Series Forecasting
Tools and Classes for Statistical Models
An Implementation of Two Modern Education-Based Value-Added
Models
Modeling and Analysis of Stochastic Systems
A 'shiny' Module for Reading Excel Sheets
Multivariate Outlier Detection and Imputation for Incomplete
Survey Data
Modified Versions of Mann Kendall and Spearman's Rho Trend Tests
R tools for processing Level 2 Cloud Mask products from MODIS
Provides a Function to Download MODIS Snow Cover
Interface to the 'MODIS Land Products Subsets' Web Services
Find, Download and Process MODIS Land Products Data
Calculating Marginal Effects and Levels with Errors
Community Structure Detection via Modularity Maximization
'MatLab'-Style Modeling of Optimization Problems
Tools for Building Regression and Classification Models
Estimate ED50 Based on Modified Turning Point Method
Gaussian Parsimonious Clustering Models with Covariates and a
Noise Component
Interact with Moscow Exchange Informational and Statistical
Server ('ISS')
Multiobjective Genetic Algorithm for Variable Selection in
Regression
A Serialization-Style Flattening and Description for JSON
Dental Surface Complexity Measurement Tools
Armadillo Client for the Armadillo Service
'OpenID Connect' Discovery and Authentication
Multiple Objective Latin Hypercube Design
Multivariate Outlier Detection in Contingency Tables
Predicting Differential Drug Response using Multi-Omics Networks
Bayesian Model Selection and Averaging for Non-Local and Local
Priors
Moment-Matching Methods for Weighted Sums of Chi-Squared Random
Variables
Moments, cumulants, skewness, kurtosis and related tests
Maximum Likelihood Analysis of Animal Movement Behavior Using
Multivariate Hidden Markov Models
Inference and Clustering for Mixture of Multinomial Principal
Component Analysis
Moments of Folded and Doubly Truncated Multivariate
Distributions
A Simple Graphical Representation of the Relative Occurrence and
Co-Occurrence of Events
Multi-Layer Perceptron Neural Network with Optional Monotonicity
Constraints
Monotonic Binning for Credit Rating Models
Shiny User Interface for 'monobin' Package
Easily Create, View and Use Monochrome Colour Palettes
Perform Monothetic Clustering with Extensions to Circular Data
Estimation for MVN and Student-t Data with Monotone Missingness
Explore Monophyly of Taxonomic Groups in a Phylogeny
Test for Monotonicity in Expected Asset Returns, Sorted by
Portfolios
Automatic Parallelized Monte Carlo Simulations
Helper Functions to Work with 'Moodle' Data
Functions and Datasets for the Book by Keon-Woong Moon
Collection of Datasets Pertaining to Loop 1 "Mopac"
MOPSOCD: Multi-objective Particle Swarm Optimization with
Crowding Distance
Basic Quality Data Assurance for Epidemiological Research
Check Time Homogeneity and Markov Chain Order
A Toolbox for Conditional Inference Random Forests
Color schemes compatible with red-green color perception
difficulties
3D Segmentation of Voxels into Morphologic Classes
Estimate Parameters of Mixtures of Logistic Regressions
Calculations and Visualisations Related to Geometric
Morphometrics
Morphometric Maps, Bone Landmarking and Cross Sectional Geometry
Modelling Tools for Reproduction and Survival Data in
Ecotoxicology
Simple raw data generator based on user-specified summary
statistics
Analysis of Archaeological Mortality Data
The Double-Gap Life Expectancy Forecasting Model
Parametric Mortality Models, Life Tables and HMD
A Framework for Various Types of Mortality / Life Tables
Estimation and Projection of Age-Specific Mortality Rates
Project MOSAIC Statistics and Mathematics Teaching Utilities
Function-Based Numerical and Symbolic Differentiation and
Antidifferentiation
Common Utilities for Other MOSAIC-Family Packages
An Interface to Statistical Modeling Independent of Model
Architecture
Multi-Objective Simultaneous Model and Feature Selection
Multi-Omic Integration via Sparse Singular Value Decomposition
Moving Sum Based Procedures for Changes in the Mean
Learning Hybrid Bayesian Networks using Mixtures of Truncated
Basis Functions
Effect Size and Confidence Interval Calculator
Motif-Based Spectral Clustering of Weighted Directed Networks
Analyzing Paired Neuron Discharge Times for Time-Domain
Synchronization
Mountain Plots, Folded Empirical Cumulative Distribution Plots
Mouse-Tracking Measures from Trajectory Data
Visualizing and Analyzing Animal Track Data
Calculation of Slope-Dependant Accumulated Cost Surface,
Least-Cost Paths, Least-Cost Corridors, Least-Cost Networks
Related to Human Movement Across the Landscape
Animal Movement Modelling using Hidden Markov Models
Estimate Wind Speeds from Bird Trajectories
Mixtures of von Mises-Fisher Distributions
Weekly Notified Dengue Cases in Sri Lanka
Multi-Patient Analysis of Genomic Markers
Multinomial Probit Bayesian Additive Regression Trees
Treatment Allocation in Clinical Trials by the Maximal Procedure
Multivariate Process Capability Indices (MPCI)
Mean-Parametrized Conway-Maxwell Poisson (COM-Poisson)
Regression
Data Sets and Scripts for Modeling Psychophysical Data in R
A Two-Step Approach to Testing Overall Effect of
Gene-Environment Interaction for Multiple Phenotypes
The package can implement the network-based metabolite pathway
identification of pathways
Calculations of One Discrete Model in Several Time Steps
Modified Profile Likelihood Estimation for Weibull Shape and
Regression Parameters
Graphical Model Stability and Variable Selection Procedures
An R Package for Facilitating Large-Scale Latent Variable
Analyses in Mplus
Decision Trees with Structural Equation Models Fit in 'Mplus'
Most Probable Number and Other Microbial Enumeration Techniques
Symbolic Computation and More with Multivariate Polynomials
Statistics for analysing multiple simultaneous point processes
on the real line
Maximum Parsimony of Recombination to Infer Parental Genotypes
Estimating Through the Maximum Product Spacing Approach
Modeling Phylogenetic Signals using Eigenvector Maps
Mass-Preserving Spline Functions for Soil Data
Analyze Multinomial Processing Tree Models
Multiverse Analysis of Multinomial Processing Tree Models
Data Sets from Montgomery, Peck and Vining
Modelling and Quantitative Methods in Fisheries
Metabolomic Quantitative Trait Locus Mapping
Two Sample Mendelian Randomization using Robust Adjusted Profile
Score
Ratios of Coefficients in the General Linear Model
Bayesian Summary Data Models for Mendelian Randomization Studies
Magnetic Resonance Binning, Integration and Normalization
Scale Space Multiresolution Analysis of Random Signals
Methods for Analyzing Multiple Response Categorical Variables
(MRCVs)
Fits regression models when the outcome is partially missing
Marine Regions Data from 'Marineregions.org'
Markov Random Field Models for Image Analysis
Fitting and Predicting Large-Scale Nonlinear Regression Problems
using Multi-Resolution Functional ANOVA (MRFA) Approach
Markov Random Fields with Additional Covariates
Depth Measures in Multivariate, Regression and Functional
Settings
Multi-Resolution Estimation of the Hazard Rate
A Causal Mediation Method with Methylated Region (MR) as the
Mediator
Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for
Genome-Wide Association Study
Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for
Genome-Wide Association Study with Graphical User Interface
Parallelized Minimum Redundancy, Maximum Relevance (mRMR)
PC Algorithm with the Principle of Mendelian Randomization
Minimal Clinically Important Difference and Response Shift
Effect for Health-Related Quality of Life
MDL Multiresolution Linear Regression Framework
Regression Analysis for Very Large Data Sets via Merge and
Reduce
Multi-Resolution Scanning for Cross-Sample Differences
Multiple Responses Subgroup Identification using 'GUIDE'
Algorithm
A multiplicative-regression model for relative survival
A Sample Size Calculator for Micro-Randomized Trials
Sample Size Calculator for MRT with Binary Outcomes
Package for Calculation of ARMSS, Local MSSS and Global MSSS
Multivariate Fay Herriot Models for Small Area Estimation
Difference Benchmarking for Multivariate Small Area Estimation
Multi-Step Adaptive Estimation Methods for Sparse Regressions
Ratio Benchmarking for Multivariate Small Area Estimation
Statistical analysis for Methylation-sensitive Amplification
Polymorphism data
Multiscale Bernstein Polynomials for Densities
Hazard of Multi-Stage Clonal Expansion Models
Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint'
Documents
Multivariate Synthetic Control Method Using Time Series
Combine Data from Positive and Negative Ionization Mode Finding
Common Entities
Multiscale Change Point Detection via Gradual Bandwidth
Adjustment in Moving Sum Processes
Analyzing Gene Tree Quartets under the Multi-Species Coalescent
Tests of Multispecies Coalescent Gene Tree Simulator Output
R Client for the Microsoft Cognitive Services Text Analytics
REST API
R Client for the Microsoft Cognitive Services 'Text-to-Speech'
REST API
R Client for the Microsoft Cognitive Services Web Language Model
REST API
Bayesian Inference for Multivariate Stochastic Differential
Equations
Parametric Estimation in Mixed-Effects Stochastic Differential
Equations
Data and Functions for the Book Modern Statistical Graphics
Multivariate Sparse Group Lasso for the Multivariate Multiple
Linear Regression with an Arbitrary Group Structure
A library to serialize or unserialize data in MessagePack format
Degrees of Freedom of Elastic Net, Adaptive Lasso and
Generalized Elastic Net
Extends Messages, Warnings and Errors by Adding Levels and Log
Files
Multiplicative SHAP Values for Two-Part Models
An R Package for Exploring Molecular Signatures Database
MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format
Micro Simulation Model for Cervical Cancer Prevention
Improved Techniques to Estimate Trend, Velocity and Acceleration
from Sea Level Records
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions and Datasets for "Methods of Statistical Model
Estimation"
Building Augmented Data to Run Multi-State Models with 'msm'
Package
Multivariate Statistical Methods with R Applications
Data Sets and Functions Used in Multivariate Statistics: Old
School by John Marden
A Modified Sequential Probability Ratio Test (MSPRT)
Multi-State Reliability Demonstration Tests (MSRDT)
Helper Functions for Second Primary Cancer Analyses
Tools to Work with Microsoft SQL Server Databases via 'RODBC'
Nonparametric Estimation for Multistate Models
Data Preparation, Estimation and Prediction in Multi-State
Models
A Collection of DIF Tests for Multistage Tests
Multiple Testing of Local Extrema for Detection of Change Points
Procedures to Generate Patterns under Multistage Testing
Multivariate Symmetric Uncertainty and Other Measurements
Multi-Trait Analysis of Rare-Variant Association Study
Toolkit for Time Related Data Presentation and Adding Colors to
Markdown or Shiny
Read Data from Delimited 'MTConnect' Data Files and Perform some
Analysis
Mass Transportation Distance Rank Histogram
Maximum Tangent Likelihood Estimation for Linear Regression
Sample Size and Power for Association Studies Involving
Mitochondrial DNA Haplogroups
Survival Prediction with Multi-Task Logistic Regression
Multi-Task Prediction using Stacking Algorithms
A Shiny Application for Automatic Measurements of Tree-Ring
Widths on Digital Images
All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS)
and Estimating Multivariate Volatility Models
Multivariate Time Series Data Imputation
Methods in Mahalanobis-Taguchi (MT) System
Generate MUAC and BMI z-Scores and Percentiles for Children and
Adolescents
Data on Freedom of Information Act Requests
Interchange Tools for Multi-Parameter Spatiotemporal Data
Relative Risk Based on the Ratio of Median Unbiased Estimates
Hazard Function Estimation in Survival Analysis
Constructing Hierarchical Voronoi Tessellations and Overlay
Heatmap for Data Analysis
Exploring Data with Tree Data Structures
Generates Muller Plot from Population/Abundance/Frequency
Dynamics Data
Create, Modify and Visualize Multi-Layered Networks
Optimal Allocation in Stratified Sampling
Multivariate Analysis Using Biplots in R
Simultaneous Inference in General Parametric Models
Multivariate Version of the Diebold-Mariano Test
Multiple Equivalence Tests and Simultaneous Confidence Intervals
Optimal Exact Tests for Multiple Binary Endpoints
GEE Solver for Correlated Nominal or Ordinal Multinomial
Responses
Apply Functions to Multiple Multidimensional Arrays or Vectors
Finite Difference Method for Multi-Asset Option Valuation
Multicountry Term Structure of Interest Rates Models
Multiblock Data Fusion in Statistics and Machine Learning
Evaluating Multinomial Order Restrictions with Bridge Sampling
A Companion to the Multi-CAST Collection
A Generic Convex-Hull-Based Model Selection Method
Build MultiClass Pair-Based Classifiers using TSPs or RF
Flexible Modeling of Multivariate Count Data via the
Multivariate Conway-Maxwell-Poisson Distribution
Multiple Copy Number Variation Detection
Collinearity Detection in a Multiple Linear Regression Model
Add Multiple Colors to your Console & RMarkdown Output
Permutations of Multisets in Cool-Lex Order
A Graph-Based Test for Comparing Multivariate Distributions in
the Multi Sample Framework
Multivariate Difference Between Two Groups
Multivariate Analysis and Visualization for Biological Data
Multivariate Functional Additive Mixed Models
Multiverse Analyses for Conditioning Data
Multiscale Fisher's Independence Test for Multivariate
Dependence
Dealing with Several Images of a Same Object Constituted of
Different Zones
Read Fixed Width Format Files Containing Lines of Different Type
Probability Models and Statistical Analysis of Random
Multigraphs
Multi Horizon Superior Predictive Ability
Enables Efficient Joining of Data File on Common Fields using
the Unix Utility Join
Estimation and Inference for Multi-Kink Quantile Regression
Transitive Index Numbers for Cross-Sections and Panel Data
Multidimensional Latent Class Item Response Theory Models
Multilevel and Mixed Effects Model Diagnostics and Effect Sizes
Capture-Mark-Recapture Analysis using Multiple Non-Invasive
Marks
Latent Variable Model to Infer Food Intake from Multiple
Biomarkers
Harmonizing Various Comorbidity, Multimorbidity, and Frailty
Measures
Regression analysis of overdispersed correlated count data
Bayesian Network Meta-Analysis of Individual and Aggregate Data
Simultaneous Confidence Intervals for Multinomial Proportions
According to the Method by Sison and Glaz
Bayesian Inference for Multinomial Models with Inequality
Constraints
Robust Estimation of Overdispersed Multinomial Regression Models
Provides Test Functions for Multivariate Integration
Generation of Multivariate Ordinal Variates
Infrastructure to Assemble Multi-Panel Figures (from Grobs)
A Package to Test for Multi-Trait Association
Variable Importance Analysis with Population Intervention Models
Estimating Multiple Breakpoints for a Sequence of Realizations
of Bernoulli Variables
Test and Detection of Explosive Behaviors for Time Series
Weighted Cox-Regression for Nested Case-Control Data
Additive and Multiplicative Null Models for Multiple Stressor
Data
Algebraic Tools for the Analysis of Multiple Social Networks
Multiplier Data Envelopment Analysis and Cross Efficiency
Calculate Multivariate Richness via UTC and sUTC
Fast Cross-Validation for Multi-Penalty Ridge Regression
Multiply Robust Methods for Missing Data Problems
Calculating and Visualizing ROC and PR Curves Across Multi-Class
Classifications
Bias, Precision, and Power for Multi-Level Random Regressions
Reconstruction of Clones from Integration Site Readouts and
Visualization
Selecting Combinations of Predictors by Leveraging Multiple AUCs
for an Ordered Multilevel Outcome
Estimation of Accuracy in Multisite Machine-Learning Models
Causal Mediation Analysis in Multisite Trials
Measures, Tests and Removes Multivariate Skewness
Clustering a Data Set using Multi-SOM Algorithm
MultiSV: an R package for identification of structural
variations in multiple populations based on whole genome
resequencing
Spectral Analysis Tools using the Multitaper Method
Penalized Estimation and Forecasting of Multiple Subject Vector
Autoregressive (multi-VAR) Models
Measuring Multivariate Dependence Using Distance Multivariance
Models Multivariate Cases Using Random Forests
Multiple Imputation for Multivariate Data
Variable Selection in a Multivariate Linear Model
'Explorable Multiverse' Data Analysis and Reports
Hypothesis Tests for Association Between Subgroups in Two Data
Views
Estimation of Multivariate Long-Memory Models Parameters
Model Multivariate Ordinal Responses Including Response Styles
Permutation Tests for Multivariate Survival Analysis
Common Multiple Testing Procedures and Gatekeeping Procedures
Variable Importance Measures for Multivariate Random Forests
Metabolomics Univariate and Multivariate Analysis
Multiplicative Mixed Models using the Template Model Builder
Interpolate Munsell Renotation Data from Hue/Chroma to CIE/RGB
Murphy Diagrams for Forecast Comparisons
Murty's Algorithm for k-Best Assignments
Monetary Unit Sampling and Estimation Methods, Widely Used in
Auditing
Conversion of Nuclear Magnetic Resonance spectrum in audio file
A Graphical User Interface for the MuToss Project
Decipher Mutational Signatures from Somatic Mutational Catalogs
Computation and Decomposition of the Mutual Information Index
MultiClass Visualizable Classification using Combination of
Projections
An Introduction to Applied Multivariate Analysis with R
Statistical Methods for Analysing Multivariate Abundance Data
Modelling Multivariate Binary Data with Blocks of Specific
One-Factor Distribution
Workspace Organization, Code and Documentation Editing, Package
Prep and Editing, Etc
Multivariate Variance Components Tests for Multilevel Data
Multivariate Generalized Linear Mixed Models for Ranking Sports
Teams
Causal Inference using Multivariate Generalized Propensity Score
Influence Measures and Diagnostic Plots for Multivariate Linear
Models
Compute and Visualize Bivariate Associations
Multivariate Linear Model with Analytic p-Values
Multivariate, Locally Stationary Wavelet Process Estimation
Multivariate Meshes and Histograms in Arbitrary Dimensions
Multivariate and Univariate Meta-Analysis and Meta-Regression
A General Framework of Multivariate Mixed-Effects Selection
Models
Multi-State Adaptive Dynamic Principal Component Analysis for
Multivariate Process Monitoring
Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Nelson-Aalen Estimator of the Cumulative Hazard in Multistate
Models
Bayesian Analysis Framework for MVN (Mixture) Distribution
Fast Multivariate Normal and Student's t Methods
Moving Grid Adjustment in Plant Breeding Field Trials
Powerful Tests for Multivariate Normality
Normality test for multivariate variables
Generate New Multivariate Normal Samples from Permutations
Goodness of Fit Tests for Multivariate Normality
Test for Multivariate Normal Distribution Based on a
Characterization
Multivariate Outlier Detection Based on Robust Methods
Multivariate Peaks-over-Threshold Modelling for Spatial Extreme
Events
Orthant Probability of the Multivariate Normal Distribution
Compute the Coefficient of Determination for Vector or Matrix
Outcomes
Mean and Variance of Truncated Normal Distribution
Generalized Shapiro-Wilk test for multivariate normality
Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Causal Inference in Spatiotemporal Event Data
Multichannel Wavelet Deconvolution with Additive Long Memory
Noise
Solvers for Maximum Weight Connected Subgraph Problem and Its
Variants
Penalized Moving-Window Lasso Method for Genome-Wide Association
Studies
Two Stage Moving-Window Ridge Method for Prediction and
Estimation
Efficient mixed-level k-circulant supersaturated designs
Feature Selection (Including Multiple Solutions) and Bayesian
Networks
Measurement Model of Derivatives in 'OpenMx'
Stepwise Variable Selection Procedures for Regression Analysis
Integrative immunoinformatics for Mycobacterial diseases in R
platform
Automatic Correlation and Regression Test in a 'data.frame'
Regression Models for Monozygotic Twin Data
Port of the 'Scilab' 'n1qn1' Module for Unconstrained BFGS
Optimization
Fast and Scalable Approximate k-Nearest Neighbor Search Methods
using 'N2' Library
Comprehensive Library for Working with Missing (NA) Values in
Vectors
Read Cancer Records in the NAACCR Format
Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low
Dimensions
Nondetects and Data Analysis for Environmental Data
Data Analysis for Censored Environmental Data
IRT Parameters for the National Assessment of Education Progress
Operations to Ease Data Analyses Specific to Nigeria
High Performance Implementation of the Naive Bayes Algorithm
Nonparametric Additive Instrumental Variable Estimator and
Related IV Methods
Using Needleman-Wunsch to Match Sample Names
Provide namespace managment functions not (yet) present in base
R
Named Entity Recognition in Texts using 'NameTag'
Data Structures, Summaries, and Visualisations for Missing Data
Tools for Nanoparticle Simulation and Calculation of PDF and
Total Scattering Structure Function
Performs Quality Control, Data Normalization, and Batch Effect
Correction for 'NanoString nCounter' Data
Nanosecond-Resolution Time Support for R
Non-Local Alternative Priors in Psychology
A Flexible and Robust Sys.sleep() Replacement
Nonlinear Cointegrating Autoregressive Distributed Lag Model
Subset- And Name-Aware Array Utility Functions
Collection of datasets from the ASA 2006 data expo
NeuroAnatomy Toolbox for Analysis of 3D Image Data
NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron
Similarity and Clustering
NeuroAnatomy Toolbox ('nat') Extension for Handling Template
Brains
File System Utility Functions for 'NeuroAnatomy Toolbox'
Fast C++ Primitives for the 'NeuroAnatomy Toolbox'
Install the 'Natverse' Packages from Scratch
Obtain Unweighted Natural Strata that Balance Many Covariates
Estimating the Error Variance in a High-Dimensional Linear Model
Classify Occurrences by Confidence Levels in the Species ID
Navigated Weighting for the Inverse Probability Weighting
Maximum Likelihood method in estimating effective population
size from genetic data
Determining the Best Number of Clusters in a Data Set
Vignette Engine Wrapping Jupyter Notebooks
NBD-Dirichlet Model of Consumer Buying Behavior for Marketing
Research
Design and Monitoring of Clinical Trials with Negative Binomial
Endpoint
Negative Binomial Linear Discriminant Analysis
Functions for Optimal Non-Bipartite Matching
Negative Binomial Models for RNA-Sequencing Data
Network-Based R-Statistics using Mixed Effects Models
Interactive Document for Working with Naive Bayes Classification
NCA Calculations and Population Model Diagnosis
Noncompartmental Analysis for Pharmacokinetic Report
Interface to Unidata netCDF (Version 4 or Earlier) Format Data
Files
Helper Functions for Use with the 'ncdf4' Package
Extract Metadata from 'NetCDF' Files as Data Frames
Miscellaneous Functions for Creating Adaptive Functions and
Scripts
Hierarchical Archimedean Copulas Constructed with Multivariate
Compound Distributions
Unified Algorithm for Non-convex Penalized Estimation for
Generalized Linear Models
Non-Central Squared Copula Models Estimation
Clustering of Omics Data of Multiple Types with a Multilayer
Network Representation
Regularization Paths for SCAD and MCP Penalized Regression
Models
Wicked-Fast Streaming 'JSON' ('ndjson') Reader
Interactive Presentation for Working with Normal Distribution
Efficient Network Enrichment Analysis Test
Calculating Effective Sizes Based on Known Demographic
Parameters of a Population
Negative Binomial and Beta Binomial Bayesian Regression Models
Estimating the Number of Essential Genes in a Genome
Classification, Regression, Clustering with K Nearest Neighbors
Querying and Managing 'Neo4J' Databases in 'R'
Tools to Calibrate and Work with NEON Atmospheric Isotope Data
Access to the Neotoma Paleoecological Database Through R
Network Assisted Algorithm for Epigenetic Studies Using Mean and
Variance Combined Signals
Interface to 'Neptune' Experiment Tracking and Management Tool
Modeling, Imputing and Generating Synthetic Versions of Nested
Categorical Data in the Presence of Impossible Combinations
Build Nesting or Hierarchical Structures
Handle Ambiguity of Protein Identifications from Shotgun
Proteomics
Inference of Species Associations from Co-Occurrence Data
Inferring Causal Effects on Collective Outcomes under
Interference
Analysis of Diffusion and Contagion Processes on Networks
Network Applications to Facial Communication Data
Network Generator for Combinatorial Graph Problems
Network-Based Genome Wide Association Studies
Estimating network indices, including trophic structure of
foodwebs in R
Tools for Working with Samples of Networks
Build and Run Spatially Explicit Agent-Based Models
Network Meta-Analysis using Frequentist Methods
Dynamic Mixed-Membership Network Regression Model
Origin Estimation for Propagation Processes on Complex Networks
Permutation Testing Network Module Preservation Across Datasets
Calculates Basic Network Measures Commonly Used in Network
Medicine
Measures of Network Segregation and Homophily
Actuarial Functions for Non-Life Insurance Modelling
Retrieve Network Statistics Including Available TCP Ports
Network Strengths and Weaknesses Analysis
Connect to the 'nettskjema.no' API of the University of Oslo
Graphic Presentation of Complex Genomic and Network Data
Analysis
Network Reverse Engineering with Approximate Bayesian
Computation
Bayesian Package for Network Changepoint Analysis
Statistical Comparison of Two Networks Based on Three Invariance
Measures
Regression Model on Network-Linked Data with Statistical
Inference
Tools for using Network Reporting Estimators
Simulate Bipartite Graphs with Fixed Marginals Through
Sequential Importance Sampling
Methods and Measures for Brain, Cognitive, and Psychometric
Network Analysis
Tools for Identifying Important Nodes in Networks
Recursive Partitioning of Network Models
Visualization and Analysis Tools for Neural Networks
'Neuroconductor' Base Package with Helper Functions for 'nifti'
Objects
Data Structures and Handling for Neuroimaging Data
Preprocessing of Structural MRI for Multiple Neurodegenerative
Diseases
Functions to Generate fMRI Data Including Activated Data, Noise
Data and Resting State Data
Test for a Neutral Evolutionary Model in Cancer Sequencing Data
An Alternative to the Hodrick-Prescott Filter
Computes Pdf, Cdf, Quantile and Random Numbers, Measures of
Inference for 19 General Families of Distributions
True Discovery Guarantee by Combining Partial Closed Testings
Extending the Newman Studentized Range Statistic to
Transcriptomics
Programmatically Collect Normalized News from (Almost) Any
Website
Semisupervised Model for Geographical Document Classification
Statistical Tests to Compare Curves with Recurrent Events
Parallel Analysis and Other Non Graphical Solutions to the
Cattell Scree Test
Numerical Formal Concept Analysis for Systematic Clustering
N-Factor Commodity Pricing Through Term Structure Estimation
Event Stream Abstraction using Interval Logic
Functions to Calculate Optimal Fourth Down Decisions in the
National Football League
Functions to Efficiently Access NFL Play by Play Data
Functions to Efficiently Simulate and Evaluate NFL Seasons
Nonparametric Failure Time Bayesian Additive Regression Trees
The Standard Distribution Functions for the 3D NFW Profile
Bayesian Variable Selection for SNP Data using Normal-Gamma
Interactive 3D Visualization of Molecular Structures
A Simple General Purpose N-Gram Tokenizer
Fitting the Centered Autologistic and Sparse Spatial Generalized
Linear Mixed Models for Areal Data
Non-Gaussian State-Space with Exact Marginal Likelihood
Data from the US National Health and Nutrition Examination Study
Tools for Working with the National Hydrography Dataset
A Minimum-Dependency 'R' Interface to the 'NHL' API
Scores for Every Season Since the Founding of the NHL in 1917
Scrapes the 'NHL' API for Statistical Analysis
Non-Homogeneous Markov and Hidden Markov Multistate Models
Bayesian Non-Homogeneous Markov and Mixture Models for Multiple
Time Series
Non-Homogeneous Markov Switching Autoregressive Models
Modelling and Validation of Non Homogeneous Poisson Processes
Breast Cancer Survival and Therapy Benefits
NHS Data Dictionary Toolset for NHS Lookups
Tools for Working with NHS Number Checksums
NHS and Healthcare-Related Data for Education and Training
Draw XmR Charts for NHSE/I 'Making Data Count' Programme
Markov Model Multiple Imputation for NIAID OS
Niche Region and Niche Overlap Metrics for Multidimensional
Ecological Niches
Tools for Ecological Niche Evolution Assessment Considering
Uncertainty
Common Analysis with Remote Sensing Data
Nonnegative Integer Solutions of Linear Diophantine Equations
with Applications
MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Adaptive Parallel Tempering for 'NIMBLE'
Bayesian Analyses of Radiocarbon Dates with NIMBLE
Distributions for Ecological Models in 'nimble'
Spatial Capture-Recapture (SCR) Methods Using 'nimble'
Sequential Monte Carlo Methods for 'nimble'
Principal Components Analysis using NIPALS or Weighted EMPCA,
with Gram-Schmidt Orthogonalization
National Information Platforms for Nutrition Anthropometric Data
Toolkit
Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal
Testing
Novel Statistical Methods for Studying Near-Infrared
Spectroscopy (NIRS) Time Series Data
Nonlinear least squares examples from NIST
Fundamental Physical Constants and Unit Conversions from NIST
Finds the Best Subset of Points to Sample
Download Image Files from the 'NeuroImaging Tools and Resources
Collaboratory'
Data and Source Code From: Nitrogen Uptake and Allocation
Estimates for Spartina Alterniflora and Distichlis Spicata
Noninferiority Tests with Variable Margins
Snow Water Equivalent Modeling with the 'Delta.snow' Model and
Empirical Regression Models
Download, Analyze & Clean New Jersey Car Crash Data
Interface to the National Lakes Assessment
Solve Nonlinear Optimization with Nonlinear Constraints
Models for Non Linear Causality Detection in Time Series
Linear and Nonlinear Mixed Effects Models
Non-linear mixed-effects modelling in nlme using differential
equations
Datasets and utility functions enhancing functionality of nlme
package
Visual Model Checking for Nonlinear Mixed Effect Model
Nonlinear Mixed Effects Models in Population PK/PD
Functions for Nonlinear Least Squares Solutions
Nonlinear Network, Clustering, and Variable Selection Based on
DCOL
Estimators of Non-Linear Cross-Validated Risks Optimized for
Small Samples
Nonlinear Regression for Agricultural Applications
Higher Order Inference for Nonlinear Heteroscedastic Models
Non-Linear Relative Risk Estimation and Plotting
Setup, Run and Analyze 'NetLogo' Model Simulations from 'R' via
'XML'
Robust Non-Linear Regression using AIC Scores
Fitting Structural Equation Mixture Models
Convenient Functions for Non-Linear Regression
Non-Linear Shrinkage Estimation of Population Eigenvalues and
Covariance Matrices
Nonlinear Regression in Predictive Microbiology
Fitting Nonlinear Models with Scale Mixture of Skew-Normal
Distributions
An R Package for Fitting Separable Nonlinear Models
A Nondecimated Lifting Transform for Signal Denoising
Wald Test of Nonlinear Restrictions and Nonlinear CI
Network Meta-Analysis of Multiple Diagnostic Tests
Network Meta-Analysis using Integrated Nested Laplace
Approximations
Detecting Outliers in Network Meta-Analysis
The Plate Plot for Network Meta-Analysis Results
Complex Hierarchy Questions in Network Meta-Analysis
Thresholds and Invariant Intervals for Network Meta-Analysis
Preparation, Checking and Post-Processing Data for PK/PD
Modeling
Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)
Normalized Mutual Information of Community Structure in Network
Miscellaneous Functions Used at 'Numeract LLC'
Goodness of Fit Checks for Binomial N-Mixture Models
Inverse Probability Weighting under Non-Monotone Missing
Numerical Methods and Optimization in Finance
Understanding Nonlinear Mixed Effects Modeling for Population
Pharmacokinetics
Datasets and Functions to Benchmark Neural Network Packages
Feed-Forward Neural Networks and Multinomial Log-Linear Models
Prediction Intervals of Multi-Layer Neural Networks
Time Series Forecasting with Neural Networks
Non-Negative Garrote Estimation with Penalized Initial
Estimators
k-Nearest Neighbor Join for Spatial Data
Non-Negative Lasso and Elastic Net Penalized Generalized Linear
Models
The Lawson-Hanson algorithm for non-negative least squares
(NNLS)
Nearest Neighbor Based Multiple Imputation for Survival Data
with Missing Covariates
Nearest Neighbor Methods for Spatial Patterns
The Number Needed to Treat (NNT) for Survival Endpoint
Calculate Design Parameters for Biomarker Validation Studies
Supervised Data Transformation by Means of Neural Network Hidden
Layer
Incorporating Previous Findings When Evaluating New Data
Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI'
Interface)
Algorithmic Framework for Representational Learning on Graphs
Node Harvest for Regression and Classification
Simulate DNA Alignments Using Node Substitutions
Compares the Distribution of Sister Clades Through a Phylogeny
Implementation of the Natural and Orthogonal InterAction (NOIA)
model
Estimation of Intrinsic and Extrinsic Noise from Single-Cell
Data
Label Noise Filters for Data Preprocessing in Classification
Cross-Entropy Optimisation of Noisy Functions
Noise Quantification in High Throughput Sequencing Output
Noisy Stochastic Block Mode: Graph Inference by Multiple Testing
Hierarchical Cluster Analysis of Nominal Data
Biplot representations of categorical data
Calculate Total Points and Probabilities for Nomogram
Randomization Test for Sequences of Nominal Values
Noncompartmental Analysis for Pharmacokinetic Data
Causal Inference in the Presence of Treatment Noncompliance
Under the Binary Instrumental Variable Model
Bayesian Analysis of Randomized Experiments with Non-Compliance
Weighted Average Ensemble without Training Labels
Invariant Causal Prediction for Nonlinear Models
Loading NONMEM Output Files with Functions for Visual Predictive
Checks (VPC) and Goodness of Fit (GOF) Plots
Create and Evaluate NONMEM Models in a Project Context
Multivariate Lomax (Pareto Type II) and Its Related
Distributions
A Collection of Nonparametric Hypothesis Tests
Nonparametric Methods for Measuring Efficiency and Productivity
Metagenome Coverage Estimation and Projections for 'Nonpareil'
a Non-Parametric Statistical Significance Test for Rolling
Correlation
Model Checking and Variable Selection in Nonparametric
Regression
Detecting Isotope, Adduct and Homologue Relations in LC-MS Data
Quantized simulation data of isotope pattern centroids
Normal aka Gaussian (1-d) Mixture Models (S3 Classes and
Methods)
Arctic Ice Studio's Nord and Group of Seven Inspired Colour
Palettes for 'ggplot2'
Dataset for Climate Analysis with Data from the Nordic Region
Analysis of multivariate normal datasets with missing values
Analysis of Incomplete Multivariate Data under a Normal Model
A Graphical User Interface for Testing Normality Visually
Routines for Exponential Power Distribution
Normalisation of Multiple Variables in Large-Scale Datasets
Normalize Gene Expression Data using Evaluated Methods
Evaluates complex erf, erfc, Faddeeva, and density of sum of
Gaussian and Student's t
Neyman Smooth Tests of Normality for the Errors of ARMA Models
Assessing Normality of Stationary Process
Compute Node Overlap and Segregation in Ecological Networks
A Forward Agent-Based Transmission Chain Simulator
Send Alerts to your Cellphone and Phillips Hue Lights
Send push notifications to your smartphone via pushover.net
(ACCOUNT REQUIRED!)
Data for Lai et al. (2021) Appl. Veg. Sci.
Predicting Economic Variables using Dynamic Factor Models
Nonparametric Kernel Smoothing Methods for Mixed Data Types
Non-Parametric Measures of Actigraphy Data
Multiple Comparisons and Simultaneous Confidence Intervals
Nonparametric Analysis of Longitudinal Data in Factorial
Experiments
Nonparametric Analysis of Multivariate Data in Factorial Designs
Nonparametric Tests for Main Effects, Simple Effects and
Interaction Effect in a Factorial Design with Censored Data
Non-Parametric Bayesian Multiple Imputation for Categorical Data
Nonparametric Combination of Hypothesis Tests
Nonparametric Methods for Cognitive Diagnosis
Non Parametric Test for Detecting Changes in the Copula
Some Nonparametric CUSUM Tests for Change-Point Detection in
Possibly Multivariate Observations
Neyman-Pearson Classification via Cost-Sensitive Learning
Nonparametric Estimation in Mixture Cure Models
Normalised Prediction Distribution Errors for Nonlinear
Mixed-Effect Models
Exact Nonparametric Hypothesis Tests for the Mean, Variance and
Stochastic Inequality
Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry
Data
Planning and Analysing Survival Studies under Non-Proportional
Hazards
Sample Size Calculation for the Proportional Hazards Mixture
Cure Model
Sample Size Calculation under Non-Proportional Hazards
Nonparametric Interaction Tests for Factorial Designs with
Repeated Measures
Plotting linkage and association results
Nonparametric Models for Longitudinal Data
Type-Specific Failure Rate and Hazard Rate on Competing Risks
Data
Two-Groups Mixture Model with Covariates
Nonparametric Maximum Likelihood Estimation for Random Effect
Models
Nonparametric Comparison of Multivariate Samples
Nonparametric Tests for Equality of Location Against Ordered
Alternatives
Normalized Power Prior Bayesian Analysis
Nonparametric Partially-Balanced Incomplete Block Design
Analysis
Vegetation Phenological Cycle and Anomaly Detection using Remote
Sensing Data
Nonparametric Regression via Smoothing Splines
Nonparametric Estimation of the Derivatives of a Regression
Function
Nonparametric Estimation of Regression Models with
Factor-by-Curve Interactions
Nonparametric Robust Estimation and Inference Methods using
Local Polynomial Regression and Kernel Density Estimation
Neyman-Pearson (NP) Classification Algorithms and NP Receiver
Operating Characteristic (NP-ROC) Curves
Kernel-Based Nonparametric ROC Regression Modelling
Nonparametric Rotations for Sphere-Sphere Regression
Convenience Functions and Tests for Working With the Net
Promoter Score (NPS)
Nonparametric and Stochastic Efficiency and Productivity
Analysis
Validate Instrumental Variables using NPS
Generalization of Hewitt's Seasonality Test
Sample Size and Power Calculation for Common Non-Parametric
Tests in Survival Analysis
Nonparametric Bootstrap and Permutation Tests
Nonparametric Multiple Change Point Detection Using WBS
Metrics for Multiple Testing with Correlated Outcomes
NRI for Risk Prediction Models with Time to Event and Binary
Response Data
Methods for Fitting and Simulating Non-Stationary ARFIMA Models
Simulation and Estimation of the Neyman-Scott Type Spatial
Cluster Models
Numerical Standard Errors Computation in R
Fetch Data from 'National Stock Exchange (India)'
Bhavcopy and Live Market Data from National Stock Exchange (NSE)
India for Equities and Equity Derivatives (F&O)
A Clean API for Lazy and Non-Standard Evaluation
Elitist Non-dominated Sorting Genetic Algorithm based on R
An Implementation of Non-Dominated Sorting Genetic Algorithm III
for Feature Selection
Functions and Datasets to Accompany Hollander, Wolfe, and
Chicken - Nonparametric Statistical Methods, Third Edition
National Statistical Office of Mongolia's Open Data API Handler
Inference for Multiple Change-Points in Linear Models
Nonparametric and Semiparametric Mixture Estimation
Interface to National Sleep Research Resource
NUtrient Cycling and COMpetition Model Undisturbed Open Bog
Ecosystems in a Temperate to Sub-Boreal Climate
Validate, Compare and Format Identification Numbers from Brazil
Statistical Framework to Define Subgroups in Complex Datasets
Create a Kaplan-Meier Plot with Numbers at Risk
Numeric Routines for Optically Stimulated Luminescence Dating
Food Composition Information and Dietary Assessment
Structure Learning with Copula Graphical Model
Nonparametric Varying Coefficient Spike-and-Slab Lasso
The n-vector Approach to Geographical Position Calculations
using an Ellipsoidal Model of Earth
Create n-Dimensional, Quasi-Proportional Venn Diagrams
Import, Clean and Update Data from the New Zealand Freshwater
Fish Database
Accessing Data Stored in 'LaBB-CAT' Instances
Driving Offences in New Zealand Between 2009 and 2016
Reconstruction of Transmission Chains from Surveillance Data
General Purpose 'Oai-PMH' Services Client
Harvest Metadata Using OAI-PMH Version 2.0
Computation of the Orbit-Aware Quad Census
Outright Tool for the Analysis of Spatial Inequalities and
Segregation
Objective Bayesian Analysis for Spatial Regression Models
'RStudio' Addin for Removing Objects from the Global Environment
Based on Patterns and Object Type
Oblique Random Forests from Recursive Linear Model Splits
Oblique Random Forests for Right-Censored Time-to-Event Data
Estimate the Population Size for the Mb Capture-Recapture Model
An R package to assess agreement between observers
Collect and Process Physical Activity Direct Observation Data
Objective Bayesian Model Discrimination in Follow-Up Designs
Sensitivity analysis for Observational studies
Probability Functions for Occupancy Distributions
High-Dimensional Multiscale Online Changepoint Detection
A Plotting Toolbox for 2D Oceanographic Data
Visualisation of Oceanographic Data and Model Output
Oceanographic Data Sets for 'oce' Package
Order Constrained Solutions in k-Means Clustering
Gaussian Model-Based Clustering with Outliers
Regression for Rank-Indexed Compositional Data
Interface to Open Collaboration Services (OCS) REST API
Download Data from the 'Open Case Studies' Repository
Manipulate and Map Origin-Destination Data
Open Document Databases (.odb) Management
Connect to ODBC Compatible Databases (using the DBI Interface)
Odds Ratios, Contingency Table, and Model Significance from a
Generalized Linear Model Object
Odds Plot to Visualise a Logistic Regression Model
Odds Ratio Calculation for GAM(M)s & GLM(M)s
Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using Compiled Code
Sensitivity Analysis of Ordinary Differential Equations
Convert 'ODK' or 'XLSForm' to 'SPSS' Data Frame
Optimal Design and Statistical Power of Multilevel Randomized
Trials
Statistical Methods for Outcome-Dependent Sampling Designs
Optimal Estimation of Function Parameters by Iterated
Linearization
Orthogonalizing EM: Penalized Regression for Big Tall Data
Modeling the Kinetics of CO2 Production in Alcoholic
Fermentation
Enhanced 'R Markdown' Format for 'Word' and 'PowerPoint'
Manipulation of Microsoft Word and PowerPoint Documents
Detect Multiple Change Points from Time Series
A Meta-Analysis Approach with Filtering for Identifying
Gene-Level Gene-Environment Interactions with Genetic
Association Data
Estimation of Ordered Generalized Linear Models
Modeling of Ordinal Random Variables via Softmax Regression
OGA+HDIC+Trim and High-Dimensional Linear Regression Models
Ordered Homogeneity Pursuit Lasso for Group Variable Selection
Crosstab and Statistical Tests for OII MSc Stats Course
Multivariate Methods Based on the Oja Median and Related
Concepts
Crawler and Data Scraper for Open Journal System ('OJS')
Retrieve Oklahoma Mesonet climatological data
A k-Nearest Neighbours Ensemble via Optimal Model Selection for
Regression
Odd Log-Logistic Generalized Gamma Probability Distribution
Tools for Building OLS Regression Models
filter the molecular descriptors for QSAR
Omega-Generic: Composite Reliability of Multidimensional
Measures
Open-Source Software for 'Omic' Data Analysis and Visualization
Data Integration with Two-Way Orthogonal Partial Least Squares
Cell-Type-Specific Association Testing in Bulk Omics Experiments
Univariate Bootstrapping and Other Things
A Modified Fisher’s Method to Test Overall Gene-Level Effect
Model and Solve Mixed Integer Linear Programs
A Solver for 'ompr' that Uses the R Optimization Infrastructure
('ROI')
A Metabolomics Analysis Tool for Intuitive Figures and
Convenient Metadata Collection
Test of Between-Group Differences in the Onset of Senescence
Names Given to Babies in Ontario Between 1917 and 2018
Templated Reporting Workflows in Word and PowerPoint
Bayesian Logistic Regression for Oncology Dose-Escalation Trials
Maximum likelihood tree models for oncogenesis
Fast, Universal, and Intuitive Computing on Large-Scale
Single-Cell Data
Maximum Homogeneity Clustering for Univariate Data
Construction of Genetic Maps in Experimental Crosses
One Rule Machine Learning Classification Algorithm with
Enhancements
One Sample Mendelian Randomization and Instrumental Variable
Analyses
Observers Needed to Evaluate Subjective Tests
Efficient Authenticated Interaction with the O*NET API
One-Way Tests in Independent Groups Designs
Online Bayesian Methods for Change Point Analysis
Online Change Point Detection in High-Dimensional Covariance
Structure
Forecast Modelling for Online Applications
Online Fitting of Time-Adaptive Lasso Vector Auto Regression
Helper Functions for Point Pattern Analysis
Interactive Annotation of Characters with Biological Ontologies
Create Validation Tests for Automated Content Analysis
Class Unions, Matrix Operations, and Color Schemes for OOMPA
Helper Functions for Class Object-Oriented Programming
'Opal' Data Repository Client and 'DataSHIELD' Utils
Opasnet Modelling Environment Utility Functions
Optimal Distribution Preserving Down-Sampling of Bio-Medical
Data
Tools for the Analysis of Air Pollution Data
Bindings to 'OpenCV' Computer Vision Library
Access the City of Toronto Open Data Portal
EBGM Disproportionality Scores for Adverse Event Data Mining
Data Sets and Supplemental Functions from 'OpenIntro' Textbooks
and Labs
Quantitative Analysis and Visualization of LUCC
A 'Prometheus' Client for R Using the 'OpenMetrics' Format
Open Machine Learning and Open Data Platform
Easily Install and Load the 'openMSE' Packages
Apache OpenNLP Jars and Basic English Language Models
Interpretive Clustering for Repertory Grids
Retrieval, Analysis and Visualization of Air Traffic Data
Analyze, Process, Identify, and Share, Raman and (FT)IR Spectra
Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
An Open Source Implementation of the 'ArcGIS' Toolbox 'STARS'
An Open-Source Loader for Bruker's timsTOF Data Files
Tools for Creating and Analysing Air Trajectory Data
Utilities for Working with R's Operators
Optimized Automated Gaussian Mixture Assessment
Analyzing the Opinions in a Big Text Document
Routing Distribution, Broadcasts, Transmissions and Receptions
in an Opportunistic Network
Optimal Designs for the 5-Parameter Logistic Model
Optimal Combinations of Diagnostic Tests Based on AUC
'surv' Object Confidence Bands Optimized by Area
Optimal Block Designs for Two-Colour cDNA Microarray Experiments
Estimation of Optimal Number of Biomarkers for Two-Group
Microarray Based Classifications at a Given Error Tolerance
Level for Various Classification Rules
Circular, Periodic, or Framed Data Clustering: Fast, Optimal,
and Reproducible
Determine Optimal Clustering Algorithm and Number of Clusters
Calculating Optimal and D-Augmented Designs
Tools to Support Optimization Possibly with Bounds and Masks
Near-Optimal and Balanced Group-Sequential Designs for Clinical
Trials with Continuous Outcomes
Estimation of value and hedging strategy of call and put
options
Likelihood Based Optimal Partitioning and Indicator Species
Analysis
Computing Optimal Cutpoints in Diagnostic Tests
A Toolbox for Computing Efficient Designs of Experiments
Bayesian Methods for Optimal Threshold Estimation
Graphical and Numerical Checks for Mode-Finding Routines
Flexible Optimization of Complex Loss Functions with State and
Parameter Space Constraints
Optimos Prime Helps Calculate Autoecological Data for Biological
Species
Parallel Version of the L-BFGS-B Optimization Method
A Replacement and Extension of the 'optim' Function
Model Based Diagnostics for Multivariate Cluster Analysis
Expanded Replacement and Extension of the 'optim' Function
Optimal Two and Three Stage Designs for Single-Arm and Two-Arm
Randomized Controlled Trials with a Long-Term Binary Endpoint
Option Pricing with Efficient Simulation Algorithms
Utilizes the Black-Scholes Option Pricing Model to Perform
Strategic Option Analysis and Plot Option Strategies
Optimum Contribution Selection and Population Genetics
Linear, Quadratic, and Rational Optimization
Determine Optimum Stocking Times Used in Fishery Enhancements
Estimating the Optimal Number of Migration Edges from 'Treemix'
Optimal Partitioning of Similarity Relations
Optimization Toolbox for Solving Linear Systems
Optimal Row-Column Designs for Two-Colour cDNA Microarray
Experiments
Optimal Level of Significance for Regression and Other
Statistical Tests
Targeted Stable Balancing Weights Using Optimization
OPUS Miner Algorithm for Filtered Top-k Association Discovery
Statistical Methods for Modelling Operational Risk
Convenient Tools for Working with Oracle Databases
Computation of Graphlet Orbit Counts in Sparse Graphs
Several confidence intervals for the odds ratio
Subspace Clustering Based on Arbitrarily Oriented Projected
Cluster Generation
Order Restricted Clustering for Microarray Experiments
Estimate Procedure in Case of First Order Autocorrelation
Likelihood-Based Continual Reassessment Method (CRM) Dose
Finding Designs
Separating Location and Dispersion in Ordinal Regression Models
Identification of Differentially Expressed Genes
Estimate parent distributions with data of several order
statistics
Test, Check, Verify, Investigate the Monotonic Properties of
Vectors
Sampling from k-th Order Statistics of New Families of
Distributions
Efficiently Generates Random Order Statistic Variables
Least Squares, Logistic, and Cox-Regression with Ordered
Predictors
Ordinal Data Clustering, Co-Clustering and Classification
Ordinal Regression Analysis for Continuous Scales
Ordinal Forests: Prediction and Variable Ranking with Ordinal
Target Variables
Ordinal Regression for High-Dimensional Data
Co-Clustering of Ordinal Data via Latent Continuous Random
Variables
Biplot representations of ordinal variables
Analysis of Repeatability and Reproducibility Studies with
Ordinal Measurements
Compute least squares estimates of one bounded or two ordered
isotonic regression curves
Concurrent Generation of Ordinal and Normal Data with Given
Correlation Matrix and Marginal Distributions
Selection, Fusion, Smoothing and Principal Components Analysis
for Ordinal Variables
An R Interface to the Onigmo Regular Expression Library
Large Amplitude Oscillatory Shear (LAOS)
Connector to the Objective Revision Evaluation Service (ORES)
Analyse Text Files Created by Emacs' Org mode
Order-restricted Information Criterion-based Clustering
Algorithm
Explicitly Qualifying Namespaces by Automatically Adding 'pkg::'
to Functions
Operations Research LOCational Analysis Models
Spanish version of orloca package. Modelos de localizacion en
investigacion operativa
Fitting Semiparametric Cumulative Probability Models for Big
Data
Advanced Plotting of Ordinal Regression Models
Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output
Order Restricted Assessment Of Microarray Titration Experiments
Southern Ocean Frontal Distributions (Orsi)
Converting Odds Ratio to Relative Risk in Cohort Studies with
Partial Data Information
Semi-Parametric Dimension Reduction Models Using Orthogonality
Constrained Optimization
Dynamic Panel Models with Orthogonal Reparameterization of Fixed
Effects
Collection of functions for orthogonal and orthonormal
polynomials
Connects to Google Cloud API for Label Detection
Generation of Customizable, Discretized Time Series of
Oscillating Species
Orthogonal Signal Deconvolution for Spectra Deconvolution in
GC-MS and GCxGC-MS Data
Design, Planning and Analysis of Observational Studies
Finds an Optimal System of Distinct Representatives
Interface to the 'Open Science Framework' ('OSF')
Raw System Credential Store Access from R
Import 'OpenStreetMap' Data as Simple Features or Spatial
Objects
Download and Import Open Street Map Data Extracts
Construction of Geostatistical Sampling Designs with OSM Data
Object Oriented Simulator of Marine Ecosystems
Add a Scale Bar to 'OpenStreetMap' Plots
Orthogonal Sparse Non-Negative Matrix Tri-Factorization
Utility Functions for Open Systems Pharmacology R Packages
Quadratic Programming Solver using the 'OSQP' Library
Interface Between R and the OpenStreetMap-Based Routing Service
OSRM
O-Stats, or Pairwise Community-Level Niche Overlap Statistics
Mean Partition, Uncertainty Assessment, Cluster Validation and
Visualization Selection for Cluster Analysis
Optimal Trees Ensembles for Regression, Classification and Class
Membership Probability Estimation
One Time Password Generation and Verification
An R Wrapper for the 'OpenTripPlanner' REST API
Data Fusion using Optimal Transportation Theory
Variable Selection for Optimal Treatment Decision
Summarizing OTU Table Regarding the Composition, Abundance and
Beta Diversity of Abundant and Rare Biospheres
North Temperate Lakes - Microbial Observatory 16S Time Series
Data and Functions
Ornstein-Uhlenbeck Models for Phylogenetic Comparative
Hypotheses
Bayesian Reconstruction of Disease Outbreaks by Combining
Epidemiologic and Genomic Data
Multivariate Outlier Detection and Replacement
Outlier Detection for Multi-replicated High-throughput Data
A Collection of Outlier Ensemble Algorithms
Explainable Outlier Detection Through Decision Tree Conditioning
Functions for Solving Multiple-criteria Decision-making Problems
Install and Run Programs, Outside of R, Inside of R
Analysis of Evolutionary Rates in an OU Framework
Overdispersion in Count Data Multiple Regression Analysis
Estimates of Coefficient of Overlapping for Animal Activity
Patterns
Estimation of Overlapping in Empirical Distributions
Test Overlapping of Polygons Against Random Rotation
Easily Extracting Information About Your Data
Optimal Weight Exchange Algorithm for Optimal Designs for Three
Models
A Package for Importing Data from Our World in Data
Interface to 'OxCal' Radiocarbon Calibration
An Interface to the Oxford COVID-19 Government Response Tracker
API
Processing of Oxy-Bisulfite Microarray Data
Scans R Projects for Vulnerable Third Party Dependencies
Plot the Australian Coastline and States
Performance Attribution for Equity Portfolios
Pabon Lasso Graphs and Comparing Situations of a Unit in Two
Different Times
Partition-Assisted Clustering and Multiple Alignments of
Networks
PAC-Bayesian Estimation and Prediction in Sparse Additive
Models
Comfortable Search for R Packages on CRAN, Either Directly from
the R Console or with an R Studio Add-in
Computation and Visualization of Package Download Counts and
Percentiles
Track R Package Downloads from RStudio's CRAN Mirror
Decision Analysis Modelling Package with Parameters Estimation
Ability from Individual Patient Level Data
An Opinionated Framework for Using 'JavaScript'
A few Useful Functions for Statisticians
Multi-Block Partial Least Squares Discriminant Analysis
A Dependency Management System for Projects and their R Package
Dependencies
Penalized and Constrained Lasso Optimization
Procrustes Application to Cophylogenetic Analysis
Testing for Partial Copulas and the Simplifying Assumption in
Vine Copulas
Supplementary Tools for R Packages Developers
Quickly Get Datetime Data Ready for Analysis
Attributable Fraction Function for Censored Survival Data
Book Companion for Processing and Analyzing Financial Data with
R
Generative Mechanism Estimation in Temporal Complex Networks
Read, Manipulate and Visualize 'Pairwise mApping Format' Data
Paginate the HTML Output of R Markdown with CSS for Print
An API Client for Wikimedia Traffic Data
The package can identify the dysregulated KEGG pathways based on
global influence from the internal effect of pathways and
crosstalk between pathways
Single Cell Analysis and Differential Expression
Analyze Bacterial Pangenomes in R with 'Pagoo'
Pathway Analysis Methods for Genomewide Association Data
Use XKCD's "Painbow" Colormap in ggplot2
Creation and Manipulation of Color Palettes
Confidence intervals for the ratio of locations and for the
ratio of scales of two paired samples
Rasch Model Parameters by Pairwise Algorithm
Confidence Intervals for Two Sample Comparisons
Another Approach to Package Installation
Multiple Indicator Cluster Survey (MICS) 2014 Child
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2014 Household
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2014 Household Listing
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2014 Women
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2017-18 Data for
Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2017-18 Birth History
of Children Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2017-18 Children Age
5-17 Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2017-18 Household
Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2017-18 Maternal
Mortality Questionnaire Data for Punjab, Pakistan
Multiple Indicator Cluster Survey (MICS) 2017-18 Men
Questionnaire Data for Punjab, Pakistan
Significance Tests for Palaeoenvironmental Reconstructions
Download and Process Data from the Paleobiology Database
Analysis of Charcoal Records from the Global Charcoal Database
Geometric Morphometric Tools for Paleobiology
Pattern-Oriented Modeling Framework for Coupled Niche-Population
Paleo-Climatic Models
Paleontological and Phylogenetic Analyses of Evolution
Comprehensive Collection of Color Palettes
Create Colour Scales and Legend from Continuous or Categorical
Vectors
GPL Palettes Copied from 'Gimp' and 'Inkscape'
Fitting Point Process Models via the Palm Likelihood
Palmer Archipelago (Antarctica) Penguin Data
Partially Additive (Generalized) Linear Model Trees
Color Palettes, Colormaps, and Tools to Evaluate Them
Rank Aggregation with Partition Mallows Model
Principal Axes Methods for Contingency Tables with Partition
Structures on Rows and Columns
Prediction and Accuracy Measures for Nonlinear Models and for
Right-Censored Time-to-Event Data
Generate Heatmaps Based on Partitioning Around Medoids (PAM)
Power Analysis for Random Effects in Mixed Models
Miscellaneous Functions for Passive Acoustic Analysis
Piece-Wise Exponential Additive Mixed Modeling Tools for
Survival Analysis
Implementation of the Panel Data Approach Method for Program
Evaluation
Pam: Prediction Analysis for Microarrays
Multiple Imputation for Multivariate Panel or Clustered Data
Benchmarking and Rescaling R2 using Noise Percentile Analysis
Long Term Prediction for Epidemic and Pandemic Data
Random Effects and/or Sample Selection Models for Panel Count
Data
Matching Methods for Causal Inference with Time-Series
Cross-Sectional Data
Regression Models and Utilities for Repeated Measures and Panel
Data
A Semi-Parametric Test for Specifying Functional Form
View Medical Research Images using the Papaya JavaScript Library
Prevalence Adjusted PPV Confidence Interval
A Toolbox for Writing Pretty Papers and Reports
Distance Recordings from a Paper Plane Folding/Flying Experiment
Define and Work with Parameter Spaces for Complex Algorithms
Parallel Distance Matrix Computation using Multiple Threads
Parallel Digital Soil Mapping using Machine Learning
Support for Parallel Computation, Logging, and Function
Automation
Unified Interface to Parallelization Back-Ends
Combining Subset MCMC Samples to Estimate a Posterior Density
A Parallel-Voting Algorithm for many Classifiers
Paralellised Versions of Constraint Based Causal Discovery
Algorithms
'Htmlwidget' for a Parallel Coordinates Plot
A Fast and Lightweight R6 Parameter Interface
A Shiny GUI for some Parameter Estimation Examples
Helpers for Parameters in Black-Box Optimization, Tuning and
Machine Learning
Numeric and Visual Comparisons of Heterogeneity in Parametric
Models
Parametric Linkage and Other Pedigree Analysis in R
Run a Function Iteratively While Varying Parameters
Horn's Test of Principal Components/Factors
Parallel Bayesian Optimization of Hyperparameters
Interactive Parallel Categories Diagrams for 'easyalluvial'
'Htmlwidget' for 'd3.js' Parallel Coordinates Chart
Parallel implementation of the "segment" function of package
"DNAcopy"
The Pareto, Piecewise Pareto and Generalized Pareto Distribution
Computing, Fitting and Validating the PPS Distribution
Portfolio Allocation and Risk Management Applications
Parallel Mutual Information Estimation for Gene Network
Reconstruction
Recognize and Parse Dates in Various Formats, Including All ISO
8601 Formats
Formal Parser and Related Tools for R Markdown Documents
Parse and Manipulate Research Patient Data Registry ('RPDR')
Text Queries
A Common API to Modeling and Analysis Functions
Estimation and Diagnostics for Partially Linear Censored
Regression Models Based on Heavy-Tailed Distributions
Partitioning Using Deletion, Substitution, and Addition Moves
Optimisation with Particle Swarm Optimisation
A Graph Based Particle Simulator Based on D3-Force
Agglomerative Partitioning Framework for Dimension Reduction
Methods for Calculating the Loreau & Hector 2001 BEF Partition
Implements Measures for the Comparison of Two Partitions
Compute a distance metric between two partitions of a set
Periodic Autoregressive Time Series Models
An Implementation of Process-Aware Stealthy Attack
Detection(PASAD)
Summarize Daily Physical Activity from 'SenseWear' Accelerometer
Data
Power and Sample Size for Linear Mixed Effect Models
Calculate Power and Sample Size for Two Sample Mean Tests
Assessing the Partial Association Between Ordinal Variables
Travel Smoothly Between Country Name and Code Formats
Package for Analysis of Space-Time Ecological Series
Phylogenetic Assembly with Soft Taxonomic Inferences
Probability and Statistics with R, Second Edition
Package to Patch '.dvi' or '.synctex' Files
Communication Between Editor and Viewer for Literate Programs
Access USPTO Bulk Data in Tidy Rectangular Format
Basic Functions for Drawing Path Diagrams
Enrichment Analysis Utilizing Active Subnetworks
Compute Deviation and Correspondence Between Spatial Paths
Path Component Fit Indices for Latent Structural Equation Models
An Imputation Approach to Estimating Path-Specific Causal
Effects
Backwards Variable Selection for Paths using M Plus
Wrangle, Analyze, and Visualize Animal Movement Data
Feature Extraction from Female Brown Anole Lizard Dorsal
Patterns
Class-Focused Pattern Metric Comparisons using Simulation
Quantification of Color Pattern Variation
Versatile Pie Charts, Ring Charts, Bar Charts and Box Plots
using Patterns, Colors and Images
Deciphering Biological Networks with Patterned Heterogeneous
Measurements
Bayesian Experimental Design for Systems Biology
Perceptual Analysis, Visualization and Organization of Spectral
Colour Data
Amazon Web Services Software Development Kit
'Amazon Web Services' Analytics Services
'Amazon Web Services' Application Integration Services
'Amazon Web Services' Cost Management Services
'Amazon Web Services' Customer Engagement Services
'Amazon Web Services' Developer Tools Services
'Amazon Web Services' End User Computing Services
'Amazon Web Services' Machine Learning Services
'Amazon Web Services' Management & Governance Services
'Amazon Web Services' Networking & Content Delivery Services
'Amazon Web Services' Security, Identity, & Compliance Services
Adding Progress Bar to '*apply' Functions
Pedigree/Family-Based Genetic Association Tests Analysis and
Power
Position Balanced and Nearly Position Balanced Block Designs
Protracted Birth-Death Model of Diversification
Programming with Big Data -- Interface to MPI
Programming with Big Data -- Interface to 'ZeroMQ'
Partially Balanced Incomplete Block Designs
A Set of Datasets Used in My Classes or in the Book 'Modele
Liniowe i Mieszane w R, Wraz z Przykladami w Analizie Danych'
Estimating the Probability of Being in Response and Related
Outcomes
Access Data and Metadata from 'Microsoft' 'Power BI' Documents
Parametric Bootstrap, Kenward-Roger and Satterthwaite Based
Methods for Test in Mixed Models
Tracking the Progress of Mc*pply with Progress Bar
Permutation Based Non-Parametric Analysis of CRISPR Screen Data
The Probability of Being in Response Function and Its Variance
Estimates
Mapping Fisheries Data and Spatial Analysis Tools
GUI Tools Made Easy: Interact with Models and Explore Data
Probabilities for Bivariate Normal Distribution
Segmenting Multiple Time Series by Contemporaneous Linear
Transformation
Create 2D Principal Component Plots with Bootstrapping
Fast Principal Component Analysis for Outlier Detection
Tools for Principal Component Analysis-Based Data Structure
Comparisons
Calibration of P-Values for Point Null Hypothesis Testing
Methods for Graphical Models and Causal Inference
Match Cases to Controls Based on Genotype Principal Components
Finding the Number of Significant Principal Components
Dynamic Principal Components for Periodically Correlated
Functional Time Series
Proximity Catch Digraphs and Their Applications
Model Fitting to Progressively Censored Mixture Data
Principal Component of Explained Variance
Stan Models for the Paired Comparison Factor Model
Computation of Ancestry Scores with Mixed Families and Unrelated
Individuals
Preconditioned Conjugate Gradient Algorithm for solving Ax=b
Reconstruction of Causal Networks for Data with Random Genetic
Effects
Piecewise Constant Hazard Models for Censored and Truncated Data
Bayesian Network Learning with the PCHC and Related Algorithms
Implementation of POSIXct Work-Alike for 365 and 360 Day
Calendars
IRT Models for Polytomous and Continuous Item Responses
Group Regression Models for Risk Protein Complex Identification
Approximate Bayesian Computations for Phylogenetic Comparative
Methods
Simulation and Likelihood Calculation of Phylogenetic
Comparative Models
Fast Likelihood Calculation for Phylogenetic Comparative Models
Model Response Styles in Partial Credit Models
Estimation of an Ordinary Differential Equation Model by
Parameter Cascade Method
Penalized Cox Proportional Hazard Model for Time-Dependent
Covariates
Principal Coordinates of Phylogenetic Structure
Analyzing Real-Time Quantitative PCR Data
Quantitative Polymerase Chain Reaction (qPCR) Data Mining and
Machine Learning Toolkit
Calculate the probability of correct selection (PCS)
Panel-Corrected Standard Error Estimation in R
Parallel Constraint Satisfaction Networks in R
Tools for Regression Using Pre-Computed Summary Statistics
Convenient Tool for Solving the Prize-Collecting Steiner Tree
Problem
Periodically Correlated and Periodically Integrated Time Series
Extract Tables and Sentences from PDFs with User Interface
Cluster Analysis via Nonparametric Density Estimation
Fetch Economic and Financial Time Series Data from Public
Sources
Read Portable Document Format (PDF) Files
Text Extraction, Rendering and Converting of PDF Documents
Phenotypic Index Measures for Oak Decline Severity
Proximal/Distal Modeling Framework for Pavlovian Conditioning
Phenomena
Pattern Discovery in PDB Structures of Metalloproteins
PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher
Approximations
Threshold Model and Unit Root Tests in Cross-Section and Time
Series Data
Positive definite sparse covariance estimators
An Analysis Toolbox for Hermitian Positive Definite Matrices
Moment Condition Based Estimation of Linear Dynamic Panel Data
Models
Various Tools and Data for Quantitative Peace Science
Pareto Enrichment Analysis for Combining Heterogeneous Datasets
Two and Three Dimensional Kolmogorov-Smirnov Two-Sample Tests
Periodogram Peaks in Correlated Time Series
Peak Picking Methods Inspired by Biological Data
Monitor the Total and Peak RAM Used by an Expression or Function
Dynamic Programming Algorithm for Peak Detection in ChIP-Seq
Data
Joint Peak Detection in Several ChIP-Seq Samples
Optimal Segmentation Subject to Up-Down Constraints
Maximum Likelihood Inference for the Pearson VII Distribution
with Shape Parameter 3/2
Independent component analysis using score functions from the
Pearson system
Prediction Error Curves for Risk Prediction Models in Survival
Analysis
An implementation for association analysis with CNV data
Versatile Functions for Working with Pedigrees
Mutation Models for Pedigree Likelihood Computations
Public Economic Data and Quantitative Analysis
Pedigree, Genetic Merit, Phenotype, and Genotype Simulation
Easy Installation of the 'ped suite' Packages for Pedigree
Analysis
Creating and Working with Pedigrees and Marker Data
Client-Side R API Wrapper for Peer Models Network Model
Repository
Luck-Corrected Peer Performance Analysis in R
Population and Evolutionary Genetics Analysis System
Population Proportion Estimation using Group Testing
Geophysical Inverse Theory and Optimization
Probabilistic Sex Estimate using Logistic Regression, Based on
VISual Traits of the Human Os Coxae
A Penalized EM algorithm incorporating missing-data mechanism
Portable Emissions (and Other Mobile) Measurement System
Utilities
L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation
in GLMs and in the Cox Model
Integrative Penalized Conditional Logistic Regression
Penalized Classification using Fisher's Linear Discriminant
Feature Selection SVM using Penalty Functions
Estimating Non-Simplified Vine Copulas Using Penalized Splines
Density Estimation with a Penalized Mixture Approach
Flexible Pair-Copula Estimation in D-Vines using Bivariate
Penalized Splines
Single- And Multiple-Group Penalized Factor Analysis
Semiparametric Regression Analysis of Interval-Censored Data
using Penalized Splines
Estimating Regularized Multi-state Models Using L1 Penalties
Variable Selection in PH Cure Model with Time-Varying Covariates
Penalized Poisson Pseudo Maximum Likelihood Regression
Penalized Elastic Net S/MM-Estimator of Regression
Simulation of High-Dimensional Data and Parallelized Repeated
Penalized Regression
Data Sets for Keith McNulty's Handbook of Regression Modeling in
People Analytics
Parallelised Estimation of Prediction Error
Piecewise Exponential Distribution with Random Time Grids
Evaluation of Diversity in Nucleotide Libraries
Calculate Indices and Theoretical Physicochemical Properties of
Protein Sequences
Using Percolation and Conductance to Find Information Flow
Certainty in a Direct Network
Implementing Double Bootstrap Linear Regression Confidence
Intervals Using the 'perc-cal' Method
Estimate Percentiles from an Ordered Categorical Variable
Reconstruct Perfect Phylogenies from DNA Sequence Data
PerfMeas: Performance Measures for ranking and classification
tasks
Assessment of Regression Models Performance
Econometric Tools for Performance and Risk Analysis
An Infra-Structure for Performance Estimation of Predictive
Models
Functions for Generating Periodic Curves
Enterprise Streamlined 'Shiny' Application Framework
Permutational Algorithm to Simulate Survival Data
Multivariate Analysis of Variance Based on Distances and
Permutations
Permutational Group Sequential Test for Time-to-Event Data
Permutation Based Gene Expression Pathway Analysis
A Permutation Based Test for Biomarker Discovery in Microbiome
Data
Permutation Tests for Regression, (Repeated Measures)
ANOVA/ANCOVA and Comparison of Signals
The Symmetric Group: Permutations of a Finite Set
Functions for Generating Restricted Permutations of Data
Resampling-Based Prediction Error Estimation for Regression
Models
Examples for Integrating Prediction Error Estimation into
Regression Models
Automated Persomics Array Image Extraction
Estimation and Validation Methods for Subgroup Identification
and Personalized Medicine
Two-Part Estimation of Treatment Rules for Semi-Continuous Data
Pictographic Representation of Treatment Effects
Permutation of Species During Turnover Events
A Tidy API for Sequence Iteration and Set Comprehension
Automatic Estimation of Number of Principal Components in PCA
Computes Danish Pesticide Load Indicator
Interface to Download Data on Pests and Hosts from 'EPPO'
Building, Visualizing, Exporting and Replaying Petri Nets
Reproducible Retrieval of Pew Research Center Datasets
Loading a JAGS Module for the Piecewise Exponential Distribution
Phylogenetics for the Environmental Sciences
Estimates False Discovery Proportion Under Arbitrary Covariance
Dependence
Independent Component Analysis for Univariate Functional Data
Generate Random Samples from the Polya-Gamma Distribution
Penalized Generalized Estimating Equations in High-Dimension
Penalized Generalized Estimating Equations for Bivariate Mixed
Outcomes
Spatial Analysis and Data Mining for Field Ecologists
Nested Resolvable Designs and their Associated Uniform Designs
Estimating Multiple Gaussian Graphical Models (GGM) in Penalized
Gaussian Mixture Models (GMM)
Pseudo-Realizations for Gaussian Process Excursions
Build Dependency Graphs using Projection
Discover Probable Duplicates in Plant Genetic Resources
Collections
Computes Powell's Generalized Synthetic Control Estimator
Functions for Generating PostgreSQL Statements/Scripts
Phase II Clinical Trial Design Using Bayesian Methods
Phase II Clinical Trial Design for Multinomial Endpoints
Randomized Phase II Oncology Trials with Bernoulli Outcomes
Enhanced RTF Wrapper for Use with Existing Table Packages
Pharmacometric Power calculations for mixed study designs
Interface to the 'Pharmpy' 'Pharmacometrics' Library
Simulating and Conducting Phase 123 Trials
Simulates SPSO and Efftox Phase 12 Trials with Correlated
Outcomes
Personalized Repeated Measurement Design for Phase I Clinical
Trials
Repeated Measurement Design for Phase I Clinical Trial
Phase Plane Analysis of One- And Two-Dimensional Autonomous ODE
Systems
PHATE - Potential of Heat-Diffusion for Affinity-Based
Transition Embedding
Permutation Testing in High-Dimensional Linear Models
High-Throughput Phenotyping with EHR using a Common Automated
Pipeline
Common Public Health Statistics and their Confidence Intervals
Estimate Phenological Metrics using Presence-Only Data
Auxiliary Functions for Phenological Data Analysis
Auxiliary functions for phenological data processing, modelling
and result handling
Insect Phenology Model Evaluation Based on Daily Temperatures
Auxiliary functions for phenological data analysis
Facilitates 'PhenoCam' Data Access and Time Series
Post-Processing
Continuous Development Models for Incremental Time-Series
Analysis
Extract Remote Sensing Vegetation Phenology
Tools to Manage a Parametric Function that Describes Phenology
and More
Projecting Satellite-Derived Phenology in Space
Process Digital Images of a Vegetation Cover
Unsupervised Gold-Standard Label Free Phenotyping Algorithm for
EHR Data
Flexible Phenotype Simulation from Different Genetic and Noise
Models
Evaluation of the Proportional Hazards Assumption with a
Standardized Score Process
Automatic Phenotyping of Electronic Health Record at Visit
Resolution
Similarity and Distance Quantification Between Probability
Functions
Tools for Inference in the Presence of a Monotone Likelihood
Analyzing the Heterogeneity of Single-Cell Populations
Convert Letters to Numbers and Back as on a Telephone Keypad
Tools for Phonetic and Acoustic Analyses
Spectral Transmittance and Spectral Reflectance Data
Read Spectral and Logged Data from Foreign Files
Plant Photobiology Related Functions and Data
Spectral Response Data for Light Sensors
Waveband Definitions for UV, VIS, and IR Radiation
Tools for Plant Ecophysiology & Modeling
Penalised Maximum Likelihood Estimation for Hidden Semi-Markov
Models
Run Phoenix NLME and Perform Post-Processing
An Extension (for Package 'SigTree') of Some of the Classes in
Package 'phylobase'
Base Package for Phylogenetic Structures and Comparative Data
Interactive Phylogenetic Trees Using the 'Phylocanvas'
JavaScript Library
Integrating Phylogenetics and Climatic Niche Modeling
Automatic Shift Detection using a Phylogenetic EM
Functions for Phylogenetically Based Statistical Analyses
Modelling Competitive Exclusion and Limited Dispersal in a
Statistical Phylogeographic Framework
Fast and Exact Algorithms for Computing Phylogenetic
Biodiversity Measures
Estimating Statistical Errors of Phylogenetic Metrics
The Probability of Transmission Given Phylogenetic Linkage
Graph-Based Permutation Tests for Microbiome Data
Exploring the Phylogenetic Signal in Continuous Traits
Calculating Topological Properties of Phylogenies
The Phylogenetic Regression of Grafen (1989)
Marks Periods of 'Bedrest' in Actigraph Accelerometer Data
Process Accelerometer Data for Physical Activity Measurement
Calculate physiologic characteristics of awake and anesthetized
adults, children and infants
A Fast, Flexible Tool for Sorting Phylogenetic Trees
Phylogenetic Tools for Comparative Biology (and Other Things)
Pathwise Calibrated Sparse Shooting Algorithm
Bayesian Models for Partly Interval-Censored Data
Bayesian Model to Find Changepoints Based on Rates and Count
Data
Managing Larger Data on a GitHub Repository
Prediction Intervals for Random-Effects Meta-Analysis
Fast and Stable Estimation of the Probability of Informed
Trading (PIN)
Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for
17 Samples of 'P. Infestans" and 1 'P. Mirabilis'
Identify, Ping, and Log Internet Provider Connection Data
Data About the Victims of the Pinochet Regime, 1973-1990
Clustering Algorithm for Data Integration and Disease Subtyping
Convert Chinese Characters into Pinyin, Sijiao, Wubi or Other
Codes
Dual-Agent Dose Escalation for Phase I Trials using the PIPE
Design
Permutation p-Value Estimation for Gene Set Tests
Diagnostics, Reliability and Predictive Maintenance of Pipeline
Systems
Calculate Pi Ratings for Teams Competing in Sport Matches
Small Example Response and Response Time Data from PISA 2018
Tools for Harnessing 'MLBAM' 'Gameday' Data and Visualizing
'pitchfx'
Pivotal Methods for Bayesian Relabelling and k-Means Clustering
A Fast, Easy-to-Use Tool for Manipulating Tables in Databases
and a Wrapper of MADlib
Tables so Beautifully Fine-Tuned You Will Believe It's Magic
The Parameter Converter of the Pharmacokinetic Models
Cache 'CRAN'-Like Metadata and R Packages
Package Dependency Resolution and Downloads
Make Static HTML Documentation for a Package
Download and Manage Optional Package Data
A Consistent and Intuitive Platform to Explore the Dependencies
of Packages on the Comprehensive R Archive Network Like
Repositories
Create Simple Packages Which Do not Upset R Package Checks
Simulate Package Installation and Attach
Check the Heaviness of Package Dependencies
Get Network Representation of an R Package
Public Key Infrastucture for R Based on the X.509 Standard
Least-Squares Estimator under k-Monotony Constraint for Discrete
Functions
A reporting pipeline for checking population pharmacokinetic
model assumption
Global Sensitivity Analysis in Physiologically Based Kinetic
Modeling
Tabulate P.L. 94-171 Redistricting Data Summary Files
A Pairwise Likelihood Augmented Cox Estimator for Left-Truncated
Data
PLastic ACcumulation Estimate using R (PLACER)
Plot Raster Images Interactively on a Plain HTML Canvas
Functions for Calculating Dodge Romig, MIL STD 105E and MIL STD
414 Acceptance Sampling Plan
Processing of the 'Planet NICFI' Satellite Imagery
Simple and Accessible Data from all Known Planets
Modelling and Analysis of Leaf Gas Exchange Data
Partially Linear Additive Quantile Regression
Visualization of Plasmid Profile Results
Read, Tidy, and Display Data from Microtiter Plates
Data from a Test of the PlatoWork tDCS Headset
Single-Cell Immune Repertoire and Gene Expression Analysis
Dynamic Updating Methods for Player Ratings Estimation
Penalized Log-Density Estimation Using Legendre Polynomials
Pleiotropy Test for Multiple Traits on a Genetic Marker
Pseudo-Likelihood Estimation of Log-Multiplicative Association
Models
Portmanteau Local Feature Discrimination for Matrix-Variate Data
IRT Separate Calibration Linking Methods
Multiplicity control using Pooled LIS statistic
Bayesian Analysis of Finite Mixtures of Plackett-Luce Models for
Partial Rankings/Orderings
Estimate (Generalized) Linear Mixed Models with Factor
Structures
Polytomous Logit-Normit (Graded Logistic) Model Estimation
Multivariate Ordered Probit Model via Pairwise Likelihood
Plotting Multi-Dimensional Data - Using 'rgl'
Ternary Plots for Trinomial Regression Models
Easily Visualize Data from 'ERDDAP' Servers via the 'rerddap'
Package
Plot Summary Statistics as Choropleth Maps of Danish
Administrative Areas
Various Functions to Facilitate Visualization of Data and
Analysis
Tools for Visualizing Gaussian Mixture Models
New Plots Based on 'ggplot2' and Functions to Create Regular
Shapes
Visualization of Spatial and Spatio-Temporal Objects in Google
Earth
'ggplot2' Version of "I'm Feeling Lucky!"
Create Interactive Web Graphics via 'plotly.js'
Render 'Plotly' Maps without an Internet Connection
Plot Marginal Effects from Linear Models
Tidy Tools for Visualizing Mixture Models
Plot a Model's Residuals, Response, and Partial Dependence Plots
Plot Principal Component Histograms Around a Scatter Plot
Useful Networking Tools for Project Management
Creates an envelope that surrounds a set of points plotted in a
two dimensional space
Generate Useful ROC Curve Charts for Print and Interactive Use
Making Visual Exploratory Data Analysis with Nested Data Easier
Scale Graphics Devices Using Plot Dimensions
Graphing Nonlinear Relations Among Latent Variables from
Structural Equation Mixture Models
Spider Plots, ROC Curves, Pie Charts and More for Use in Other
Plots
Prediction Limits for Poisson Distribution
Log Linear by Linear Association models and Rasch family models
by pseudolikelihood estimation
Statistical inference in partial linear regression models
Partial Least Squares and Principal Component Regression
Partial Least Squares (PLS) Data Analysis Methods
Degrees of Freedom and Statistical Inference for Partial Least
Squares Regression
Methods for Partial Linear Single Index Model
Linear and Smooth Predictor Modelling with Penalisation and
Variable Selection
Pleasure - Partial Least Squares Analysis with Permutation
Testing
Partial Least Squares Regression for Beta Regression Models
Partial Least Squares Regression for Cox Models and Related
Techniques
Partial Least Squares Regression for Generalized Linear Models
Variable Selection in Partial Least Squares
Simulate Probabilistic Long-Term Effects in Models with Temporal
Dependence
Turn 'Plumber' APIs into 'Tableau' Extensions
Pluralize and 'Singularize' Any (English) Word
Tools for Splitting, Applying and Combining Data
Parallel Model-Based Clustering using
Expectation-Gathering-Maximization Algorithm for Finite Mixture
Gaussian Model
Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Extended
Paired Mass Distance Analysis for GC/LC-MS Based Non-Targeted
Analysis and Reactomics Analysis
Minimal Working Examples for Particle Metropolis-Hastings
Interface to the Penn Machine Learning Benchmarks Data
Repository
Deconvolution Density Estimation using Penalized MLE
Transforms Input Data from a PMML Perspective
Calculates the Minimum Sample Size Required for Developing a
Multivariable Prediction Model
Downloading, Reading and Analyzing PNADC Microdata
Probit-Normal Marginalized Transition Random Effects Models
Downloading, Reading and Analyzing PNS Microdata
Color Palettes Inspired by Nature in the US Pacific Northwest
An Elastic-Net Regularized Presence-Only Model
Finds the Price of Anarchy for Routing Games
Dose Finding in Drug Combination Phase I Trials Using PO-CRM
Probability of Detection for Qualitative PCR Methods
Principal Orthogonal ComplEment Thresholding (POET) Method
Downloading, Reading and Analyzing POF Microdata
Bayesian Variable Selection for a Poisson-Logistic Model
DataCrunchers (PogromcyDanych) is the Massive Online Open Course
that Brings R and Statistics to the People
Classification and Clustering of Sequencing Data Based on a
Poisson Model
Poisson lognormal and bivariate Poisson lognormal distribution
Data Validation and Organization of Metadata for Local and
Remote Tables
Interpretation of Point Forecasts as State-Dependent Quantiles
and Expectiles
Working Comfortably with Pointers and Shortcuts to R Objects
Analyzing Pointer Years and Components of Resilience
Input/Output Functionality for "PO" and "POT" Message
Translation Files
Data Generation with Poisson, Binary and Continuous Components
A Faster Implementation of the Poisson-Binomial Distribution
Data Generation with Poisson, Binary and Ordinal Components
Generation of Up to Four Different Types of Variables
Data Generation with Poisson, Binary, Ordinal and Normal
Components
Confidence Intervals with Poisson Double Sampling
Factorization of Sparse Counts Matrices Through Poisson
Likelihood
Simultaneous Generation of Count and Continuous Data
Simultaneous Generation of Multivariate Data with Poisson and
Normal Marginals
Simulating Homogenous & Non-Homogenous Poisson Processes
Fit high dimensional mixtures of Poisson GLMs
Efficient Computation of Ordinary and Generalized Poisson
Binomial Distributions
Robust M-Estimators Based on Transformations for Poisson Model
Significance analysis of sequencing data based on a Poisson log
linear model
Polytomous variable Latent Class Analysis
Tools for Managing, Measuring and Visualizing Policy Portfolios
Policy Learning via Doubly Robust Empirical Welfare Maximization
over Trees
Datasets and Functions Featured in Pollock and Edwards, an R
Companion to Essentials of Political Analysis, Second Edition
Authentication, User Administration, and Hosting for 'shiny'
Apps
Estimate Pollinator Body Size and Co-Varying Ecological Traits
Calculate Crosstab and Topline Tables of Weighted Survey Data
Implementation of the Polya-Aeppli distribution
Bayesian Population Genomics in Autopolyploids
Assignment of Haplotypes Based on SNP Dosages in Diploids and
Polyploids
Find the Pole of Inaccessibility (Visual Center) of a Polygon
Linkage Analysis in Outcrossing Polyploids
Infrastructure for Manipulation Polynomial Matrices
A Collection of Functions to Implement a Class for Univariate
Polynomial Manipulations
Paternity Exclusion in Autopolyploid Species
The Pharmacokinetics (PK) of Multi-Component Drugs Using a
Metabolomics Approach
Helper Functions for Orthogonal Polynomials
QTL Analysis in Autopolyploid Bi-Parental F1 Populations
Genotype Calling with Uncertainty from Sequencing Data in
Polyploids and Diploids
Tools for Polyploid Microsatellite Analysis
Simulate and Test Marker Dosage for Dominant Markers in
Autopolyploids
Bayesian Mixture Models for Marker Dosage in Autopolyploids
Bootstrapped Basis Regression with Oracle Model Selection
Adaptive Association Tests for Multiple Phenotypes using
Proportional Odds Model (POM-aSPU)
Graphical Check for Proportional Odds Assumption
Solver for Partially Observable Markov Decision Processes
(POMDP)
Pattern Oriented Modelling Information Criterion
Statistical Inference for Partially Observed Markov Processes
Person-Oriented Method and Perturbation on the Model
Predict 10-Year Risk for Atherosclerotic Cardiovascular Disease
Pooled Mean Group Estimation of Dynamic Heterogenous Panels
Computing f-Statistics and Building Admixture Graphs Based on
Allele Count or Pool-Seq Read Count Data
Methods for Pooling P-Values from (Dependent) Tests
Prevalence and Regression for Pool-Tested (Group-Tested) Data
Gene-Based Association Tests using the Actual Impurity Reduction
(AIR) Variable Importance
A Poor Man's Dependency Free Recreation of 'dplyr'
A Flexible Syntax for Population Dynamic Modelling
Bayesian Model to Estimate Population Trends from Counts Series
Construction and Analysis of Matrix Population Models
Demographic Modelling Using Projection Matrices
Posterior Predictive (PoP) Design for Phase I Clinical Trials
Population (and Individual) Optimal Experimental Design
Functions for Epidemiological Analysis using Population Data
Useful functions for (batch) file conversion and data resampling
in microsatellite datasets
An Efficient Swiss Army Knife for Population Genomic Analyses
Accompaniment to Population Genetics with R: An Introduction for
Life Scientists
A Simple Framework to Analyse Population and Landscape Genetic
Data
Estimate Kinship and FST under Arbitrary Population Structure
For interval estimation of mean of selected populations
Classify Digital PCR Droplets by Fitting Fluorescence
Populations
Genetic Analysis of Populations with Mixed Reproduction
Reconstruct Human Populations of the Recent Past
An Efficient Implementation of Kohonen's Self-Organizing Maps
(SOMs) with Starburst Visualizations
Estimate Smooth and Linear Trends from Population Count Survey
Data
Genomic Breeding Tools: Genetic Variance Prediction and
Cross-Validation
Ridge-Type Penalized Estimation of a Potpourri of Models
Acceder Con R a Los Datos Del Portal De Hacienda
Create Useful Summaries of the Portal Data
Portmanteau Tests for Univariate and Multivariate Time Series
Models
Portfolio Analysis, Including Numerical Methods for Optimization
of Portfolios
Automated Backtesting of Portfolios over Multiple Datasets
High Frequency Price Estimators by PortfolioEffect
High Frequency Portfolio Analytics by PortfolioEffect
Valid Post-Selection Inference for Linear LS Regression
Quotient of Random Variables Conditioned to the Positive
Quadrant
Create Beautiful, Simple Personal Websites
Generate PDF Conference Posters Using R Markdown
Tools for Working with Posterior Distributions
Non-Parametric Sampling with Parallel Monte Carlo
Data Processing after Running 'GGIR' for Accelerometer Data
Tools for Interacting with 'PostgreSQL' / 'PostGIS' Databases
Estimating the Incubation Period Distribution of Post-Infectious
Syndrome
Parses Web Pages using Postlight Mercury
Phylogeny-Guided OTU-Specific Association Test for Microbiome
Data
Utilities for Processing Posterior Samples Stored in
'mcmc.lists'
Generalized Pareto Distribution and Peaks Over Threshold
Tools for Internationalization and Portability in R Packages
Markov Chain Monte Carlo for Potts Models
Phased or Unphased Linkage Disequilibrium
The Phylogenetic Ornstein-Uhlenbeck Mixed Model
Partition of Variation Variance Component Analysis Method
Full Pattern Summation of X-Ray Powder Diffraction Data
Computation of Power and Level Tables for Hypothesis Tests
Power and Sample-Size Distribution of 2-Stage Bioequivalence
Studies
Power Analysis Tool for Joint Testing Hazards with Competing
Risks Data
Power and Sample Size Calculation for Bulk Tissue and
Single-Cell eQTL Analysis
Power Calculations for GxE and GxG Interactions for GWAS
Sample Size Analysis for Psychological Networks and More
Power/Sample Size Calculation for Mediation Analysis
Power analyses for the affected sib pair and the TDT design
Power and Sample Size Calculation for Survival Analysis of
Epidemiological Studies
Power and Sample Size for (Bio)Equivalence Studies
Power Analysis Tools for Multilevel Randomized Experiments
Probability Plot Correlation Coefficient Test
Projection Pursuit for Cluster Identification
Probabilistic and Possibilistic Cluster Analysis
Interfacing with ProPublica's 'Congress' API
Partial and Semi-Partial (Part) Correlation
Spatial Analysis of Pakistan Population Census
Diagnosis and Visualizations Tools for Temporal Point Processes
Generalised Additive Point Process Models
Projection Pursuit Based on Gaussian Mixtures and Evolutionary
Algorithms
Lookup Tables to Generate Poverty Likelihoods and Rates using
the Poverty Probability Index (PPI)
Read Census Privacy Protected Microdata Files
Privacy-Protecting Hazard Ratio Estimation in Distributed Data
Networks
Probabilistic Two Sample Mendelian Randomization
A Collection of Models that Employ a Prior Distribution on
Partitions
Process Performance Qualification (PPQ) Plans in Chemistry,
Manufacturing and Controls (CMC) Statistical Analysis
Design Clinical Trials using Sequential Predictive Probability
Monitoring
Projection Pursuit Classification Tree Visualization
web tool for estimating under-five deaths caused by poor-quality
antimalarials in sub-Saharan Africa
Efficient Mixed Model Analysis of Count Data in Large-Scale
Genomic Sequencing Studies
Functions for Clustering and Testing of Presence-Absence,
Abundance and Multilocus Genetic Data
Tools for Designing and Weighting Survey Samples
Provides a pragma / directive / keyword syntax for R
Prais-Winsten Estimator for AR(1) Serial Correlation
Kvantitatiivsete meetodite praktikumi asjad / Functions used in
the course "Quantitative methods in behavioural sciences"
(SHPH.00.004), University of Tartu
Tools for Information-Based Feature Selection and Scoring
Testing Workbench for Precision-Recall Curves
Conduct a Prospective or Retrospective Design Analysis
Precipitation Intensity, Concentration and Anomaly Analysis
A Multiscale Framework for Data Analysis of Global Precipitation
Estimate Sample Size Based on Precision Rather than Power
Suite of Functions to Help Get Plot Elements Exactly Where You
Want Them
Accurate Floating Point Sums and Products
Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Computational Prediction of Proteins Encoded by Circadian Genes
Discrimination Mitigation for Machine Learning Models
Genomic Prediction of Hybrid Performance
Draw Three Dimensional Predict Plot Using Package 'rgl'
Prediction Interval Functions for Assessing Replication Study
Results
Prediction for Future Data from any Continuous Distribution
Prediction Intervals for Three Basic Statistical Models
Calculate Predicted Means for Linear Models
Predict the Race and Gender of a Given Name Using Census and
Social Security Administration Data
Classification rule based on Bayesian mixture models with
feature selection bias corrected
Estimates Reliability of Individual Supervised Learning
Predictions
R Package for Pairwise Preference Elicitation
2-Stage Preference Trial Design and Analysis
Utilities to Fit Paired Comparison Models for Preferences
Pre-Knitting Processing and Post HTML-Rendering Processing
Dirichlet Process Bayesian Clustering, Profile Regression
Names Given to Babies in Quebec Between 1980 and 2020
Preparing Experimental Data for Statistical Analysis
Basic Functions for Pre-Processing Microarrays
Various Preprocessing Transformations of Numeric Data Matrices
Interactive Document for Preprocessing the Dataset
Utilities for Preparation of Data Analysis
R Markdown Templates to Preregister Scientific Studies
Specify (Pre)Registrations and Export Them Human- And
Machine-Readably
Registry of Victims of State Terrorism in Argentina
Probability-Scale Residuals and Residual Correlations
Indeterminacy of Networks via Press Perturbations
'RStudio' Addins to Prettify 'JavaScript', 'C++', 'Python', and
More
Creating Pretty Documents from R Markdown
Pretty Summaries of Generalized Linear Model Coefficients
Scale Bar, North Arrow, and Pretty Margins in R
Pretty, Human Readable Formatting of Quantities
Geostatistical Modelling of Spatially Referenced Prevalence Data
Estimating Regional Trends of a Prevalence from a DHS and
Similar Surveys
Prevalence to Incidence Calculations for Point-Prevalence
Studies in a Nosocomial Setting
Data Pre-Processing for Bacterial Genome-Wide Association
Studies
Permutation Significance for Random Forests
Calculating Bilateral and Multilateral Price Indexes
Van Westendorp Price Sensitivity Meter Analysis
Multiplexed Primer Design by Linear Set Coverage Approximation
Parametric Simplex Method for Sparse Learning
Use Prime Factorization for Computations
Projected Refinement for Imputation of Missing Entries in PCA
Functions and Data for the Book, a Primer of Ecology with R
Visually Assessing the Specificity and Informativeness of Primer
Pairs
Eigenvalues and Singular Values and Vectors from Large Matrices
Fit a Principal Curve in Arbitrary Dimension
Finding and plotting simple basis vectors for multivariate data
Automatically Print R Objects to Appropriate Formats According
to the 'knitr' Output Format
Candidate Gene Prioritization for Non-Communicable Diseases
Based on Functional Information
Prioritizing Cancer Drugs for Interested Cancer
Generates Prior Distributions for Proportions
Systematic Conservation Prioritization in R
Analyzing Multiple Omics Data with an Offset Approach
Access Data from the Oregon State Prism Climate Project
Penalized Regression with Inferred Seasonality Module -
Forecasting Unemployment Initial Claims using 'Google Trends'
Data
Protocol Inspection and State Machine Analysis
Creates a Prisma Diagram using 'DiagrammeR'
Plot Flow Charts According to the "PRISMA" Statement
Downloads and Parses World Prison Brief Data
Differentially Private Regularized Logistic Regression
Estimation of Prevalence Ratios using Logistic Models
Point-Process Response Model for Optogenetics
PRO-CTCAE Scoring, Analysis, and Graphical Tools
Elementary Probability on Finite Sample Spaces
Tools for Post-Processing Class Probability Estimates
Statistical Tools for Probing Moderation Effects
Probit with Spatial Dependence, SAR, SEM and SARAR Models
Computing Logit & Probit Predicted Probabilities & Marginal
Effects
Unsupervised Multivariate Outlier Probabilities for Large
Datasets
Score Optimal Probabilistic Forecast Reconciliation
Probabilistic Sampling Design and Strategies
Interactive Document for Working with Basic Probability
Inference for the Stress-Strength Model R = P(Y<X)
Extraction of Bands from MODIS Calibrated Radiances MOD02 NRT
Several Methods for Procedural Name Generation
Rule-Based Conformance Checking of Business Process Event Data
Product Density Estimation for ICA using tilted Gaussian density
estimates
Product-Limit Estimation for Censored Event History Analysis
Indices of Productivity Using Data Envelopment Analysis (DEA)
An Alternative Display Profiling Data as Tree Structure
Compute and Visualize Profile Extrema Functions
Profile R Code and Visualize with 'Pprof'
Read, Manipulate, and Write Profiler Data
Profile Likelihood for a Parameter in Commonly Used Statistical
Models
Profiling Inference Functions for Various Model Classes
Profile Analysis of Multivariate Data in R
Fit Projected 2D Profiles to Galaxy Images
Probabilistic Forecast Combination Using CRPS Learning
Downloading and Exploring Data from the PROFOUND Database
An Alternative Display for Profiling Information
Interactive Visualizations for Profiling R Code
Finding the Optimal Cluster Number Using Progeny Clustering
Prognostic ROC curves for evaluating the predictive capacity of
a binary test
An Inclusive, Unifying API for Progress Updates
Generic Coordinate System Transformations Using 'PROJ'
A simple interface to the PROJ.4 cartographic projections
library
Management of Deterministic and Stochastic Projects
A Project Infrastructure for Researchers
Automates the Creation of New Statistical Analysis Projects
Task Tracking and Project Management with GitHub
Calculates and Analyzes the Proliferative Index
Preference Ranking Organization METHod for Enrichment of
Evaluations
Abstractions for Promise-Based Asynchronous Programming
Analysis & Measurement of Promotion Effectiveness
Add Tooltips in 'Shiny' Apps with 'Hint.css'
Analyzing Combination of Proportions and Relative Risk
Various Confidence Interval Methods for Proportions
Treatment Effect Estimate in Strata with Missing Data
Parse 'Java' Properties Files for 'R Service Bus' Applications
Inference on Single Binomial Proportion and Bayesian
Computations
Feature (gene) selection based on the Proportional Overlapping
Scores
Calculating Proportionality Between Vectors of Compositional
Data
Propensity score methods for assigning treatment in randomized
trials
'ProPublica' U.S. Congress Bills API Wrapper
Patient Reported Outcomes Regression Analysis
Functions to Score Commonly-Used Patient-Reported Outcome (PRO)
Measures and Other Psychometric Instruments
Tools to Score Patient-Reported Outcome (PRO) and Other
Psychometric Measures
Penalized Regression with Second-Generation P-Values
Miscellaneous Functions for Processing and Sample Selection of
Spectroscopic Data
Search Tagged Peptides & Draw Highlighted Mass Spectra
Perform Analysis and Create Visualizations of Proteins
Optimization of a multi-stage proteomic study
Statistical Analysis of High Throughput Proteomics Data
Multiform Seq2Seq Model for Time-Feature Analysis
Highly Optimized Protocol Buffer Serializers
Inference on Prototypes from Clusters of Features
Generating Various Numerical Representation Schemes for Protein
Sequences
Manipulate and Play 'ProTracker' Modules
Bottom-Up Proteomics and LiP-MS Quality Control and Data
Analysis Tools
Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics
Tools for Natural Language Processing in French
Statistical Toolbox for Sedimentary Provenance Analysis
Compare Provenance Collections to Explain Changed Script Outputs
Creates Adjacency Matrices for Lineage Searches
Summarizes Provenance Related to Inputs and Outputs of a Script
or Console Commands
Uses Provenance to Trace File Lineage for One or more R Scripts
Alpha and Beta Proximity to Irreplaceability
Computes Proximity in Large Sparse Matrices
Minimal Protein Set Explaining Peptide Spectrum Matches
Bayesian Prior and Posterior Predictive Replication Assessment
Precision-Recall and ROC Curves for Weighted and Unweighted Data
Stochastic Simulation of Streamflow Time Series using Phase
Randomization
Test of Periodicity using Response Surface Regression
Tabular Data Backed by Partitioned 'fst' Files
Datasets and Functions Used in the Book 'Przewodnik po Pakiecie
R'
List, Query, Manipulate System Processes
Penalized Parametric and Semiparametric Bayesian Survival Models
with Shrinkage and Grouping Priors
Bayesian Dynamic Borrowing with Propensity Score
Analysis of Parent-Specific DNA Copy Numbers
Standardizing Physiological Composite Risk Endpoints
Adaptive, Sine-Multitaper Power Spectral Density and Cross
Spectrum Estimation
Download Regularly Maintained Political Science Data Sets
Use Time Series to Generate and Compare Power Spectral Density
Parameter Space Exploration with Latin Hypercubes
Methods for Evaluating Principal Surrogates of Treatment
Response
Forecasting of Univariate Time Series Using the Pattern
Sequence-Based Forecasting (PSF) Algorithm
Prediction Model Pooling, Selection and Performance Evaluation
Across Multiply Imputed Datasets
Projected Spatial Gaussian Process Methods
Decision Tree Analysis for Probabilistic Subgroup Identification
with Multiple Treatments
Build Panel Data Sets from PSID Raw Data
Pakistan Social and Living Standards Measurement Survey 2014-15
Parameter Space Partitioning MCMC for Global Model Evaluation
Estimation of Characteristics of Seasonal and Sporadic
Infectious Disease Outbreaks Using Generalized Additive
Modeling with Penalized Basis Splines
Analysis of Physiologically Structured Population Models
Functions for Analyzing Performance Science Data
PS-Integrated Methods for Incorporating RWE in Clinical Studies
Power and Sample Size for Health Researchers via Shiny
Test of Independence & Image Structural Similarity Measure PSSIM
Piecewise Exponential Model for Time to Progression and Time
from Progression to Death
Features Extracted from Position Specific Scoring Matrix (PSSM)
Flexible and Efficient Evaluation of Principal
Surrogates/Treatment Effect Modifiers
Flexible Identification of Phenotype-Specific Subpathways
Probabilistic Suffix Trees and Variable Length Markov Chains
Specification Tests for Parametric Propensity Score Models
Simulations of grouped responses relative to baseline
Propensity Score Weighting Methods for Dichotomous Treatments
Propensity Score Weighting for Causal Inference with
Observational Studies and Randomized Trials
Procedures for Psychological, Psychometric, and Personality
Research
Efficient and Publishing-Oriented Workflow for Psychological
Science
Structural Equation Modeling and Confirmatory Network Analysis
Recursive Partitioning Based on Psychometric Models
Psychrometric Properties of Moist and Dry Air
Text Mining Methods for Psychological Research
Tools to Accompany the 'psych' Package for Psychological
Research
Integrated Toolkit for Psychological Analysis and Modeling in R
Open Datasets from Meta-Analyses in Psychology Research
Real Time Monitoring of Asset Markets: Bubbles and Crisis
Helper Tools for Teaching Statistical Data Analysis
Functions for Analyzing Psychophysical Data in R
Decentralized Unequivocality in Psychological Science
Permutations of Treatment Labels and TITAN2 Analysis
Analyses of Protein Post-Translational Modifications
Poisson-Tweedie Generalized Linear Mixed Model
Construct Polygons Summarising the Location and Variability of
Point Sets
Helper Functions for Use with "ProjectTemplate"
Tail Index Estimation for Power Law Distributions
Access the 'Public Transport Victoria' Timetable API
Percentile Estimation of Fetal Weight for Twins by Chorionicity
Quality Report Generation for MaxQuant and mzTab Results
Bayesian Variable Selection with Hierarchical Priors
Performs simulation study to look for publication bias, using a
technique described by Ioannidis and Trikalinos; Clin Trials.
2007;4(3):245-53
Fetch Sections of XML Scholarly Articles
A Toolbox for Public Health and Epidemiology
Sensitivity Analysis for Publication Bias in Meta-Analyses
Bayesian Meta-Analysis with Publications Bias and P-Hacking
Format Output of Various Routines in a Suitable Way for Reports
and Publication
Gathering Metadata About Publications, Grants, Clinical Trials
from 'PubMed' Database
Create and Query a Local 'PubTator' Database
High-Dimensional Variable Selection with Presence-Only Data
Parallel Utilities for Lambda Selection along a Regularization
Path
Identification of Transcriptional Dynamics using Pulse Models
via 4su-Seq Data and RNA-Seq Data
Meta-Analysis Methods Correcting for Publication Bias
A Collection of Physical and Chemical Adsorption Isotherm Models
A Unified Pipeline for Pupillometry Data
Bayesian Estimation of Tumor Purity and Clonality
Inbreeding-Purging Estimation in Pedigreed Populations
Simple Method for Purging Mediation Effects among Independent
Variables
Tools at the Intersection of 'purrr' and 'dplyr'
Send Push Notifications using 'Pushover'
Assembling Data Sets for Non-Linear Mixed Effects Modeling
Population Viability Analysis with Data Cloning
Creates and Plots P-Value Functions, S-Value Functions,
Confidence Distributions and Confidence Densities
Calculation and Application of p-Variation
Hierarchical Clustering with P-Values via Multiscale Bootstrap
Resampling
Simplifies the Analysis of Pressure Volume and Leaf Drying
Curves
Likelihood Ratio Test-Based Approaches to Pharmacovigilance
Phylogenetic Eigenvectors Regression and Phylogentic
Signal-Representation Curve
An R package to interact with the Project Vote Smart API for
scientific research
Time Series Regression Using the Power Weighted Densities (PWD)
Approach
Design and Monitoring of Survival Trials Accounting for Complex
Situations
Utilities for Working with Air Quality Monitoring Data
Power and Sample Size Analysis for One-way and Two-way ANOVA
Models
Power Analyses for Common Designs (Power to the People)
Statistical Power Simulation for Testing the Rasch Model
Penn World Table (Versions 5.6, 6.x, 7.x)
Pena-Yohai Initial Estimator for Robust S-Regression
Lint 'Python' Files with a R Command or a 'RStudio' Addin
Interpolating Age-Specific Mortality Rates at All Ages
Types and Features for Object Oriented Programming
Automatic Item Generator for Quantitative Multiple-Choice Items
Heuristics for the Quadratic Assignment Problem (QAP)
Approximation to the Survival Functions of Quadratic Forms of
Gaussian Variables
Asymmetric Distributions and Quantile Estimation
Query the Breeding Management System 'BMS'
Tools for the Analysis of Clustered Data in QCA
Tests for Type I Error in Qualitative Comparative Analysis (QCA)
Estimate Power and Required Sample Size in QCA
Advanced Functionality for Performing and Evaluating Qualitative
Comparative Analysis
Quantitative Classification by Association Rules
Quality Control Charts under Repetitive Sampling
Fast and Easy Quality Control of EWAS Results Files
Quality Control of Genome Wide Association Study results
Sure Independence Screening via Quantile Correlation and
Composite Quantile Correlation
Bridging the Gap Between Qualitative Data and Quantitative
Analysis
Dictionaries and Word Lists for the 'qdap' Package
Regular Expression Removal, Extraction, and Replacement Tools
Modern Nonparametric Tools for Two-Sample Quantile and
Distribution Comparisons
Fitting a Quadrilateral Dissimilarity Model to Same-Different
Judgments
Density, Cumulative and Quantile Functions of Quadratic Forms
Quantitative Fatty Acid Signature Analysis
Quantitative Fatty Acid Signature Analysis in R
Pricing of Vanilla and Exotic Option Contracts
Smooth Additive Quantile Regression Models
Quantile G-Computation Extensions for Effect Measure
Modification
Statistical Tools for Quantitative Genetic Analyses
Estimate Quantitative Genetics Parameters from Generalised
Linear Mixed Models
Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
A 'shiny' Application for Active Learning Instruction in
Introductory Quantitative Genetics
Generalized Quantitative Genetics Data Analyses
Construct Nomogram for Competing Risk Models
Q-Kernel-Based and Conditionally Negative Definite Kernel-Based
Machine Learning Tools
R Bindings to the Calendaring Functionality of 'QuantLib'
Utility Sparse Matrix Functions for Quantitative Language
Comparison
Reinforcement Learning using the Q Learning Algorithm
Statistical Transformations for Post-Processing Climate Model
Output
Analysis of Subjective Perspectives Using Q Methodology
Methods for Quantitative Magnetic Resonance Imaging ('qMRI')
Modelling and Analysis of Real-Time PCR Data
Interface to the 'qpmad' Quadratic Programming Solver
Linearly Constrained Indefinite Quadratic Program Solver
Noncompartmental Pharmacokinetic Analysis by qPharmetra
Creates Simultaneous Testing Bands for QQ-Plots
Permutation Based QQ Plot and Inflation Factor Estimation
Quantile-Quantile Plot Extensions for 'ggplot2'
Self Calibrating Quantile-Quantile Plots for Visual Testing
Quantal Response Analysis for Dose-Mortality Data
A 'Shiny' Gadget for Interactive 'QRA' Visualizations
Tools that Create D3 JavaScript Force Directed Graph from R
True Random Numbers using the ANU Quantum Random Numbers Server
A Novel Quantile Regression Approach for eQTL Discovery
Nonlinear and Penalized Quantile Regression Coefficients
Modeling
Quantile Regression in Varying-Coefficient Models
Quick Response Code (QR Code) / Matrix Barcode Creator
10-Year Cardiovascular Disease Risk Calculator (QRISK3 2017)
Joint Estimation in Linear Quantile Regression
Quantile Regression for Linear Mixed-Effects Models
Provides R-Language Code to Examine Quantitative Risk Management
Concepts
Data Sets for Quantitative Risk Management Practice
Quantile Regression for Nonlinear Mixed-Effects Models
Quantitative Structure Activity Relationship (QSAR) Data Sets
Running Commands Remotely on 'Gridengine' Clusters
QTL Genome-Wide Composite Interval Mapping
QTL Genome-Wide Composite Interval Mapping with Graphical User
Interface
Quantitative Trait Locus Mapping in Experimental Crosses
Database Storage of Genotype Probabilities for QTL Mapping
Testing Pleiotropy in Multiparental Populations
Densitometric Analysis of Thin-Layer Chromatography Plates
Interactive Graphics for QTL Experiments
Tools for Mapping Multiple Complex Traits
Random-Effect Multiple QTL Mapping in Autopolyploids
Tools for Mapping of Quantitative Traits of Genetically Related
Individuals and Calculating Identity Coefficients from
Pedigrees
Quantile-Optimal Treatment Regimes with Censored Data
QuACN: Quantitative Analysis of Complex Networks
Exact permutation moments of quadratic form statistics
Functions to Solve Quadratic Programming Problems
Quadratic Programming with Absolute Value Constraints
Quadratic Root for any Quadratic Equation
Sparsity by Worst-Case Quadratic Penalties
Causal Inference with Qualitative and Ordinal Information on
Outcomes
Opinionated Approach for Digitizing Semi-Structured Qualitative
GIS Data
Automatic Generation of Qualitative Color Palettes
Implements Indices of Qualitative Variation Proposed by Wilcox
(1973)
Partitioning Uncertainty Components of an Incomplete Ensemble of
Climate Projections
Uncertainties of Climate Projections using Smoothing Splines
Streamline Descriptive Analysis of Quantitative Data Matrices
Dimension Reduction Techniques for Conditional Quantiles
Scaling Models and Classifiers for Textual Data
Plots for the Quantitative Analysis of Textual Data
Textual Statistics for the Quantitative Analysis of Textual Data
Quantification of Qualitative Survey Data
Quantile Least Mahalanobis Distance Estimator for Tukey g-&-h
Mixture
Nonparametric Confidence Intervals for Quantiles
Quantile Kriging for Stochastic Simulations with Replication
Mitigating the Adverse Impact of Batch Effects in Sample Pattern
Detection
Algorithms for Quantile- And Mean-Optimal Treatment Regimes
Growth Charts via Smooth Regression Quantiles with Automatic
Smoothness Estimation and Additive Terms
Quantile Regression Forests for 'ranger'
Quantile-Based Spectral Analysis of Time Series
Performs Common Linear Algebra Operations Used in Quantum
Computing and Implements Quantum Algorithms
Simple Methods for Calculating Value at Risk and Expected
Shortfall
Interaction Prediction Between Groundwater and Quarry Extension
Using Discrete Choice Models and Artificial Neural Networks
Comparison of Phylogenetic Trees Using Quartet and Split
Measures
R Interface to 'Quarto' Markdown Publishing System
Analyzing RNA Sequencing Count Tables Using Quasi-Likelihood
Translate 'SQL' Queries into 'R' Expressions
Functions to Make Surveys Processing Easier
Analysis of Queueing Networks and Models
Calculation of Homology of Quandles, Racks, Biquandles and
Biracks
An 'R' Client for the 'USDA NASS Quick Stats API'
A System of Plotting Optimized for Speed and Modularity
Fits Psychometric Functions for Multiple Groups
Build Regression Models Quickly and Display the Results Using
'ggplot2'
Bayesian Mixed Models for Qualitative Individual Differences
QUick IDentification of DIagnostic CHaracters
Quantile Regression Outlier Diagnostics with K Left Out Analysis
A Way of Writing Functions that Quote their Arguments
Quasi Variances for Factor Effects in Statistical Models
Quantum Walk-Based Data Analysis and Prediction
Bayesian Network Learning Improved Project
Fast and Light-Weight Caching (Memoization) of Objects and
Results to Speed Up Computations
Easy Handling of and Access to Files Organized in Structured
Directories
Methods for Accessing Huge Amounts of Data [deprecated]
Perform JIVE Decomposition for Multi-Source Data
Read and Write MAT Files and Call MATLAB from Within R
R Object-Oriented Programming with or without References
Dynamic Generation of Scientific Reports
Processing Pipeline for 'SamBada' from Pre- To Post-Processing
Estimation of R0 and Real-Time Reproduction Number from
Epidemics
Compressive Sampling: Sparse Signal Recovery Utilities
R2 Measure of Explained Variation under the Additive Hazards
Model
Estimate Structured Additive Regression Models with 'BayesX'
Multistage Sampling Allocation and Sample Selection
Bivariate (Two-Dimensional) Confidence Region and Frequency
Distribution
Multiple Peak Alignment for 2D Gas Chromatography Mass
Spectrometry Metabolomics Analysis
A Mini-Dictionary for 'R' and 'Markdown' Writing
Measure Climate Scenario Alignment of Corporate Loans
Datasets to Measure the Alignment of Corporate Loan Books with
Climate Goals
Tools to Match Corporate Lending Portfolios with Climate Data
Visualize the Climate Scenario Alignment of a Financial
Portfolio
Translation of Base R-Like Functions for 'data.table' Objects
Computes R Squared for Mixed (Multilevel) Models
R-Squared Measures for Multilevel Models
Simple R Interface to Microsoft PowerPoint using rcom or
RDCOMClient
Easily Create Production-Ready Rich Text Format (RTF) Table and
Figure
Wrapper for 'SUNDIALS' Solving ODE and Sensitivity Problem
Symbols for 'Markdown' and 'Shiny' Application
Goodness-of-Fit Tests for Capture-Recapture Models
Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS'
Create Interactive 3D Visualizations of Molecular Data
Simulating Forest Growth using the 3-PG Model
Report Functions to Create HTML and PDF Files
Statistical Inference on Lineup Fairness
Work with the Bay Area Transportation Commission Application
Programming Interface
Encapsulated Classes with Reference Semantics
R6 Reference Class Based Data Structures
Reference Analysis for Bayesian Meta-Analysis
Generate Codes to Uniquely and Robustly Identify Individuals for
Animal Behavior Studies
Simulations for Response Adaptive Block Randomization Design
Identification of Cell Types and Inference of Lineage Trees from
Single-Cell RNA-Seq Data
Pattern-Based Zoneless Method for Analysis and Visualization of
Racial Topography
Rapid A/Ci Response (RACiR) Data Analysis
Loading Data from 'ActiveCampaign API v3'
Statistical Analysis and Cut-Point Determination of Immunoassays
Normalization and Study of Rank Abundance Distributions
Nuclear Decay Data for Dosimetric Calculations - ICRP 107
Interactive Gadgets for Radial Visualization Approaches
Basics Menu for Radiant: Business Analytics using R and Shiny
Data Menu for Radiant: Business Analytics using R and Shiny
Design Menu for Radiant: Business Analytics using R and Shiny
Model Menu for Radiant: Business Analytics using R and Shiny
Multivariate Menu for Radiant: Business Analytics using R and
Shiny
Tools for plotting skew-T diagrams and wind profiles
Inverse-Regression Estimation of Radioactive Doses
Query Random User Data from the Random User Generator API
Optimize the De Novo Stacks Pipeline via R
Radon and Soil Gas Transport in 2D Porous Medium
Project Multidimensional Data in 2D Space
Random Approximate Elastic Net (RAEN) Variable Selection Method
Convenience Functions for Routine Data Exploration
Life History Metrics from Matrix Population Models
A Wrapper of the 'JavaScript' Library 'agGrid'
Ridge Estimation of Precision Matrices from High-Dimensional
Data
Ridge Estimation of Vector Auto-Regressive (VAR) Processes
Pricing Equity Derivatives with Extensions of Black-Scholes
Bagplots, Boxplots and Rainbow Plots for Functional Data
Genome-Wide Association Study with SNP-Set Methods
The Reinert Method for Textual Data Clustering
Stochastic Precipitation Downscaling with the RainFARM Method
Robust Angle Based Joint and Individual Variation Explained
Easy Spatial Microsimulation (Raking) in R
Retrieves Altmerics Data for Any Published Paper from
'Altmetric.com'
Analysis and Identification of Raman Spectra of Microplastics
Interface to the JavaScript Library 'amCharts 4'
Revealed Preference and Attention Analysis in Random Limited
Attention Models
Mass Spectrometry Metabolomics Feature Clustering and
Interpretation
Download and Read RAM Legacy Stock Assessment Database
Regularized Generalized Linear Models with Interaction Effects
Structural Equation Modeling Using the Reticular Action Model
(RAM) Notation
Bayesian Geostatistical Modeling with RAMPS
Reinforced Angle-Based Multicategory Support Vector Machines
Random number generator based on AES cipher
Covariate Balance Checks: Randomization Tests and Graphical
Diagnostics
Generate a Random p x p Correlation Matrix
Efficient Numerical Algorithm for Exact Inference in Meta
Analysis
Package Provides Access to Fake User Data
Random Network Model Estimation, Selection and Parameter Tuning
A Parallel Analysis with Polychoric Correlation Matrices
Adaptive Estimation in the Linear Random Coefficients Models
Simulation and Analysis of Random Fields
Utilities for the Simulation and Analysis of Random Fields
Breiman and Cutler's Random Forests for Classification and
Regression
Explaining and Visualizing Random Forests in Terms of Variable
Importance
Fast Unified Random Forests for Survival, Regression, and
Classification (RF-SRC)
Create a Random List for Crossover Studies
Easy-to-Use Tools for Common Forms of Random Assignment and
Sampling
Random Uniform Forests for Classification, Regression and
Unsupervised Learning
Filtering and Randomly Sampling Real User-Agent Strings
Get Random Quotes from Quotes on Design API
Toolbox for Pseudo and Quasi Random Number Generation and Random
Generator Tests
Occurrence Filtering, Geographic and Taxonomic Standardization
and Generation of Species Range Polygons
Simple Tools for Defining Species Ranges
A Platform for the Study of Macro-Ecology of Life History Traits
Provides Templates for Metadata Files Associated with Species
Range Models
Aggregation of (Partial) Ordinal Rankings
Model-Based Clustering for Multivariate Partial Ranking Data
Rank-Based Tests for General Factorial Designs
The Ranking Project: Visualizations for Comparing Populations
Ranking Responses in a Single Response Question or a Multiple
Response Question
Ranking of Nodes with Kernelized Score Functions
Methods for Working with Uncertainty in Rankings
Generation of Random Vectors with User-Defined Density
Fast Nearest Neighbour Search (Wraps ANN Library) Using L2
Metric
Base Functions and Resources for Rapporteket
Generates 'RapiDoc' Documentation from an 'OpenAPI'
Specification
A Fast and Light Package to Compute Polygenic Risk Scores
Reliable Accurate Prenatal non-Invasive Diagnosis R package
Rapid Automatic Keyword Extraction (RAKE) Algorithm
Bindings to AppArmor and Security Related Linux Tools
Application Directories: Determine Where to Save Data, Caches,
and Logs
Miscellaneous (stats) helper functions with sane defaults for
reporting
Calculate Sketches using Random Projections to Reduce Large Data
Sets
Representative and Adequate Prioritization Toolkit in R
A Simple Interface to the US EPA Air Quality System Data Mart
API
Estimate the Water Influx into Hydrocarbon Reservoirs
Linear Model with Tree-Based Lasso Regularization for Rare
Features
Combinatorial and Statistical Analyses of Rare Events
Testing Gene-Environment Interaction for Rare Genetic Variants
Ecological and biogeographical null model tests for comparing
rarefaction curves
Calculation of Rarity Indices for Species and Assemblages of
Species
Solvers for Large Scale Eigenvalue and SVD Problems
Random Subspace Ensemble Classification and Variable Screening
Access Forest Ecology Layers for British Columbia in 2001-2018
Diversity Indices for Numerical Matrices
Kernel Based Estimates on in-Memory Raster Images
A Raster Where Cells are Generic Objects
Easily and Rapidly Generate Raster Image Data with Support for
'Plotly.js'
Bayesian Estimation of the Evolutionary Rate Matrix
Statistical Models of Repeated Categorical Rating Data
A Modification of Fleiss' Kappa in Case of Nominal and Ordinal
Variables
Confidence Intervals for Comparisons of Binomial or Poisson
Rates
Connect to 'AWS Athena' using 'Boto3' ('DBI' Interface)
Rationalizing Rational Expectations. Tests and Deviations
Calculating Ratios Between Two Data Sets and Correction for
Adhering Particles on Plants
Graphical User Interface for Data Science in R
Rare Variant Analysis and Genetic Simulations
An R Interface for Raven DataFrames (Beta0)
Raven Hydrological Modelling Framework R Support and Analysis
Parameter Estimation for the Averaging Model of Information
Integration Theory
Interface to the Bird-Watching Dataset Proyecto AVIS
Raw Data Quality Control Tool for LC-MS System
Easily Get True-Positive Rate and False-Positive Rate and KS
Statistic
Create Maps and Visualize Data in 2D and 3D
'Bielefeld' Academic Search Engine ('BASE') Client
Age-Depth Modelling using Bayesian Statistics
Bayesian Trees for Conditional Mean and Variance
Implementation of BDAT Tree Taper Fortran Functions
Bayesian Change-Point Detection and Time Series Decomposition
Graded Matching for Large Observational Studies
The Beta Random Number and Dirichlet Random Vector Generating
Functions
Tools for 'Box Geometry Model' (BGM) Files and Topology for the
Atlantis Ecosystem Model
Reading and Background Subtraction in Videos
Interface to the 'Biodiversity' 'Heritage' Library
Correct Bias in DNA Methylation Analyses
Read 'Bibtex' Files and Convert Between Bibliography Formats
Inference and Prediction of ToxicoKinetic (TK) Models
User-Friendly R Interface to Biologic Web Services' API
Read/Write, Transform, and Summarize 'BIOM' Data
An R Wrapper to the Overly Complicated 'Bitmoji' API
Handling Linear Gaussian Bayesian Networks
Download Data from the Reserve Bank of New Zealand Website
Extensible, Parallelizable Implementation of the Random Forest
Algorithm
Perform Rosenbaum bounds sensitivity tests for matched and
unmatched data
Regression-Based Approach for Testing the Type of Missing Data
Alternative Bootstrap-Based t-Test Aiming to Reduce Type-I Error
for Non-Negative, Zero-Inflated Data
Rbundler manages an application's dependencies systematically
and repeatedly
Residual Balancing Weights for Marginal Structural Models
Regionalization of Multiscale Spatial Processes
Calculation of the Integrated Flow of Particles Between Polygons
Cancer Registry Data Analysis and Visualisation
Different Numeric Optimizations to Estimate Parameter
Coefficients
Access and Plot CanVec and CanVec+ Data for Rapid Basemap
Creation in Canada
Loglinear Models for Capture-Recapture Experiments
Dose Rate Modelling of Carbonate-Rich Samples
Calibration and Analysis of Radiocarbon Dates
Calculation of 22 CAnonical Time-Series CHaracteristics
Large, Sparse Optimal Matching with Refined Covariate Balance
Estimate Rogers-Castro Migration Age Schedules with Bayesian
Models
Random Coefficient Binary Response Estimation
Optimal Subset Matching with Refined Covariate Balance
Parametric Bootstrapping to Control Rank Conditional Coverage
Miscellaneous R Functions for Swedish Regional Cancer Centers
"Retained Component Criterion for Principal Component Analysis"
Robust and Conditional Data Envelopment Analysis (DEA)
R Cross Entropy Inspired Method for Optimization
Analytical Procedures in Support of Brazilian Public Sector
External Auditing
Download and Open Data Provided by the Copernicus Global Land
Service
Conjugate Gradient Minimization of Nonlinear Functions
Data on Base Packages for Current and Previous Versions of R
Chess Move, Generation/Validation, Piece Placement/ Movement,
and Check/Checkmate/Stalemate Detection
Locating Distributional Changes in Highly Dependent Time Series
Discrete Choice (Binary, Poisson and Ordered) Models with Random
Parameters
Post-Processing of the Markov Chain Simulated by ChronoModel or
Oxcal
Manipulate Matrix Row and Column Labels with Ease
A 'DBI' Interface to the 'Yandex Clickhouse' Database Providing
Basic 'dplyr' Support
R tools for integrating with the www.clinicalcodes.org
repository
Graphical Toolbox for Clustering and Classification of Data
Frames
Run 'R CMD check' from 'R' and Capture Results
R Commander Plug-in for Repeated-Measures ANOVA
R Commander Plug-in for Case 1 (Object Case) Best-Worst Scaling
R Commander Plug-in for Dichotomous Choice Contingent Valuation
R Commander Plug-in for Discrete Choice Experiments
R Commander Plugin for (industrial) Design of Experiments
Plugin de R-Commander para el Manual 'EACSPIR'
Rcmdr Evidence Based Medicine Plug-in Package
R Commander Plug-in for the EZR (Easy R) Package
R Commander Plug-in for Fuzzy Clustering Methods (Fuzzy C-Means
and Gustafson Kessel)
R Commander Plug-in for Fitting Generalized Waring Regression
Models
R Commander Plug-in for Data Visualization with 'ggplot2'
Graphical User Interface for Conducting Meta-Analyses in R
R Commander Plug-in for University Level Applied Statistics
R Commander Plug-in for Robust Principal Component Analysis
Graphical POINT of view for questionnaire data Rcmdr Plug-In
R Commander Plug-in for Risk Demonstration
Rcmdr Receiver Operator Characteristic Plug-In PACKAGE
Tools for sampling in Official Statistical Surveys
Rcmdr Plugin for Designing and Analyzing Single-Case Experiments
R Commander Plug-in for the 'survival' Package
'Rcmdr' Plugin for Alpha-Sutte Indicator 'sutteForecastR'
R Commander Plugin for Teaching Statistical Methods
Graphical Integrated Text Mining Solution
R Commander Plug-in for the 'WorldFlora' Package
Random Coefficient Minification Time Series Models
Interface to Colombos Compendia using the Exposed REST API
Utilities for using the 'COM(P)ADRE' Matrix Model Database
Functions to Support Extension Education Program Evaluation
Create a Package or Research Compendium Structure
A Collection of Small Text Corpora of Interesting Data
Cosmic Microwave Background Data Analysis
Regions of Common Profiles Modelling with Mixtures-of-Experts
High Performance Tools for Combinatorics and Computational
Mathematics
'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest
Neighbors
'Rcpp' Interface to the APT Package Manager
'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
'Rcpp' Bindings for the Boost Date_Time Library
Factor Big Integers with the Parallel Quadratic Sieve
Spatial Estimation and Prediction for Censored/Missing Responses
Examples using 'RcppClassic' to Interface R and C++
Read-Write Support for 'NumPy' Files via 'Rcpp'
'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
'date' C++ Header Library for Date and Time Functionality
Global Optimization by Differential Evolution in C++
'Rcpp' Integration of Additional Probability Distributions
'Rcpp' Integration for the 'Eigen' Templated Linear Algebra
Library
Compiles 'C++' Code using 'Rcpp', 'Eigen' and 'CppAD' to Produce
First and Second Order Partial Derivatives
Header-Only C++ Mathematical Optimization Library for
'Armadillo'
Examples using 'Rcpp' to Interface R and C++
'Rcpp' Bindings for the 'Faddeeva' Package
Interface to the Google 'FarmHash' Family of Hash Functions
'Rcpp' Bindings for the 'fast_float' Header-Only Library for
Number Parsing
'Rcpp' Interface for Querying System Configuration Variables
'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest
Neighbors
Solves Minimum Cost Bipartite Matching Problems
'MsgPack' C++ Header Files and Interface Functions for R
'Rcpp' Package Illustrating Header-Only Access to 'NLopt'
'Rcpp' Integration for Numerical Computing Libraries
An Interruptible Progress Bar with OpenMP Support for C++ in R
Packages
'Rcpp' Bindings for 'Redis' using the 'hiredis' Library
'Rcpp' Bindings for the 'simdjson' Header-Only Library for
'JSON' Parsing
Rcpp Bindings for Sequential Monte Carlo
'Rcpp' Integration of the 'Streamulus' 'DSEL' for Stream
Processing
Rcpp-Based Truncated Normal Distribution RNG and Family
'Rcpp' Bindings to Parser for Tom's Obvious Markup Language
'Rcpp' Integration of Different "Ziggurat" Normal RNG
Implementations
Correct Bias in Estimated Regression Coefficients
An Implementation of Crime Analysis Methods
An Integrated Regression Model for Normalizing 'NanoString
nCounter' Data
R Interface to the CSDP Semidefinite Programming Library
Airborne LiDAR Filtering Method Based on Cloth Simulation
Styling of Graphics using Cascading Style Sheets
Assign Treatments, Power Calculations, Balances, Impact
Evaluation of Experiments
Predict Fish Year-Class Strength from Survey Data
Simulations and Visualizations of Rubik's Cube (with Mods)
General Network (HTTP/FTP/...) Client Interface for R
Concentration-Response Data Analysis using Curvep
Interactive Networks, Timelines, Barplots, Galleries with
'D3.js'
Hierarchical and Variation Partitioning for Canonical Analysis
Functions to Interact with the 'FAIR Data Pipeline'
DCA Tools for Decline Rate Analysis and EUR Forecast
Manipulation Testing Based on Density Discontinuity
Toolbox for Regression Discontinuity Design ('RDD')
Robust Data Envelopment Analysis (DEA) for R
Decision Analytic Modelling in Health Economics
Descent-Based Calibrated Optimal Direct Estimation
Relevant Dimension Estimation (RDE) in Feature Spaces
Tools to Manipulate and Query Semantic Data
An Implementation of the 'DoubleClick for Publishers' API
API Client and Dataset Management for the Demographic and Health
Survey (DHS) Data
A Collection of Functions to Experiment Dice Rolls
R Interface to the 'DieHarder' RNG Test Suite
Dimension Reduction and Estimation Methods
Distance-Sampling Analyses for Density and Abundance Estimation
Measurement and Partitioning of Similarity-Sensitive
Biodiversity
Local Randomization Methods for RD Designs
Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files
Analysis of RD Designs with Multiple Cutoffs or Scores
Generating Various Numerical Representation Schemes of DNA
Sequences
R Interface to the 'Deutsche Nationalbibliothek (German National
Library) API'
Robust Test for Complete Independence in High-Dimensions
Get the Category of Content Hosted by a Domain
Low-Level Interface to the '.NET' Virtual Machine Along the
Lines of the R C/Call API
Create Doxygen Documentation for Source Code
Update and Manipulate Rd Documentation Objects
Subset Searching Algorithm Using DPP Greedy MAP
Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Programmatic Interface to the 'Dropbox' API
Univariate and Multivariate Damped Random Walk Processes
R Interface to DSDP Semidefinite Programming Library
An R wrapper for the Data Science Toolkit API
Data Transforming Augmentation for Linear Mixed Models
Select and Download Climate Data from 'DWD' (German Weather
Service)
R Interface to Google RE2 (C++) Regular Expression Library
Interactive Data Tables Based on 'React Table'
Easily Customize Interactive Tables Made with Reactable
Reactive Transport Modelling in 1d, 2d and 3d
Read Data Stored in DBC (Compressed DBF) Files
Parse 'ActiGraph' 'GT3X'/'GT3X+' 'Accelerometer' Data
Download and Tidy Time Series Data from the Australian Bureau of
Statistics
Simple Unified Interface to Read Bitmap Images
(BMP,JPEG,PNG,TIFF)
Reads Mass Spectrometry Data in Bruker *flex Format
Read ESA SNAP Processed Raster Format in R
Suite of Functions to Flexibly Read Data from Files
Reading Machine Learning Benchmark Data Sets in Different
Formats
Utilities for Importing and Manipulating Biomedical Data Files
Reads Mass Spectrometry Data in mzXML Format
Fast Reader for 'Wavefront' OBJ 3D Scene Files
Download and Tidy Data from the Reserve Bank of Australia
Simply Read ASCII Single and Multicard Polling Datasets
Translate Models from System Dynamics Software into 'R'
Read and Write Sparse Matrices in 'SVMLight' and 'LibSVM'
Formats
Import and Handling for Plain and Formatted Text Files
Enhanced Reading and Writing for 'SQLite' Databases
When Expectations Meet Reality: Realistic Unit Testing
Monotonize Point and Interval Functional Estimates by
Rearrangement
Clean Water Quality Data for NPDES Reasonable Potential Analyses
Empirical Bayes Estimation and Inference
R Client for the eBird Database of Bird Observations
Finite Mixture Modeling, Clustering & Classification
Build Regular Expressions in a Human Readable Way
Core Functionality for the 'rebus' Package
Date and Time Extensions for the 'rebus' Package
Numeric Extensions for the 'rebus' Package
Unicode Extensions for the 'rebus' Package
Relevant Component Analysis for Supervised Distance Metric
Learning
Recursive Mining for Frequent Pattern and Confident Association
Rules
3D Reconstruction of Archaeological Excavations
Redundancy Control in Pathways databases
Preprocessing and Feature Engineering Steps for Modeling
Ordination Methods for the Analysis of Beta-Diversity Indices
Compute the Rectangular Statistical Cartogram
Ecocrop: Estimating Environmental Suitability for Plants
Interface Functions for PMML Creation, and Data Recoding
Interactive Annotation of Text and Images
'Recom' REmoves COMments of Rscript File for you
Evaluation Metrics for Implicit-Feedback Recommender Systems
Lab for Developing and Testing Recommender Algorithms
Book-Crossing Dataset (BX) for 'recommenderlab'
Reconstruct Individual-Level Data from Published KM Plots
Toolkit to Validate New Data for a Predictive Model
Record Linkage Functions for Linking and Deduplicating Data Sets
Inference Tools in Time Series Based on Record Statistics
Recommender System using Matrix Factorization
Computes Revisitation Metrics for Trajectory Data
Companion Package to the Book 'R: Einführung durch angewandte
Statistik'
Automated Construction of R Data Packages from REDCap Projects
Reconstruction of Daily Data - Precipitation
Post Processing of (Half-)Hourly Eddy-Covariance Measurements
Reading Data from NetCDF Files for 'REddyProc'
Predict Dominant Direction of Reactions of a Biochemical Network
The Container for the DockerParallel Package
Simulation Methods for Legislative Redistricting
Tools for the IUCN Red List of Ecosystems and Species
Generates 'Redoc' Documentation from an 'OpenAPI' Specification
Regression Trees with Random Effects for Longitudinal (Panel)
Data
Objective Bayes Intrinsic Conditional Autoregressive Model for
Areal Data
Reference Interval Estimation using Real-World Data
Cluster and Merge Similar Values Within a Character Vector
Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
Refining Data Table Using a Set of Formulas
Locate Trans and Intersex-Friendly Toilets
Interactive Plotting for Functional Data Analyses
Tools for an Introductory Class in Regression and Modeling
Cluster analysis via regression coefficients
Risk Estimation for Genetic and Environmental Traits
Wrappers Around 'base::grep()' for Use with Pipes
Regular Expressions in 'shiny' Select Lists
A 'Shiny' App to Test Regular Expressions in an R Environment
Helper Functions for Regression Analysis
Convert Region Names and Division Codes of China Over Years
Curve Registration for Exponential Family Functional Data
Regression Kink with a Time-Varying Threshold
Regression-Based Causal Mediation Analysis with an Interaction
Term
Network-Based Regularization for Generalized Linear Models
Gaussian Linear Models with Linear Covariance Structure
Expander Functions for Generating Full Gradient and Hessian from
Single-Slot and Multi-Slot Base Distributions
Toolkit for Compiling, (Post-Hoc) Testing, and Plotting
Regression Results
Random Subspace Method (RSM) for Linear Regression
Information Preserving Regression-Based Tools for Statistical
Disclosure Control
Non-Parametric Bayesian Spectrum Estimation for Multirate Data
Detect and Test Regular Sequences and Subsequences
Regularized Simultaneous Component Based Data Integration
Convenience Functions for Implicit Regression Weights
Searching for Footprints of Selection using 'Extended Haplotype
Homozygosity' Based Tests
Data Only: Searching for Footprints of Selection using Haplotype
Homozygosity Based Tests
Downloads Tweets from a List of Tweet IDs
Functions from "Reinsurance: Actuarial and Statistical Aspects"
Item Analysis Package with Standard Errors
Relative Importance of Regressors in Linear Models
Functions for Mapping Key-Value Pairs, Many-to-Many,
One-to-Many, and Many-to-One Relations
Maximum Likelihood Estimation of Relatedness using EM Algorithm
Data Structures and Algorithms for Relations
Functions for estimating parameters in software reliability
models
Reliability Diagrams Using Isotonic Regression
Package for some probability distributions
Relative Contribution of Effects in a Regression Model
The Truncated Elliptical Family of Distributions
Regional Spatial Modeling with Continuous Borders
Match Regular Expressions with a Nicer 'API'
Tidy Output from Regular Expression Matching
'RStudio' Addins to Simplify 'Markdown' Writing
Insert and Extract "Reminders" from Function Comments
Extensible Markov Model for Modelling Temporal Relationships
Between Clusters
Empirical Orthogonal Teleconnections in R
Remote R: Control a Remote R Session from a Local One
R Package Installation from Remote Repositories, Including
'GitHub'
Refining Evaluation Methodology on Stage System
Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Renewal Method for Extreme Values Extrapolation
Renewable Power Systems and the Environment
Interface to Allow Full Use of the Environment Modules System
for Unix
Reordering the dendrogram according to the class labels
Calculation of Mortgage Plan or Repayment Plan
Global tests for expression data of high-dimensional sets of
molecular features
Replicability Analysis for Multiple Studies of High Dimension
Statistical Metrics for Multisite Replication Studies
Average Bioequivalence with Expanding Limits (ABEL)
Two-Way ANOVA-Like Method to Analyze Replicated Point Patterns
Test Replications by Means of the Prior Predictive p-Value
Design and Analysis of Replication Studies
Replication Timing Profiling using DNA Copy Number
Miscellaneous Tools for Reproducible Research
Create Report Table from Different Objects
Generates a Project and Repo for Easy Initialization of a
Workshop
Repeated Measures Proportional Odds Logistic Regression
Automated Reporting of Results and Statistical Models
Lightweight Infrastructure for Handling Multiple R Markdown
Documents
A General Message and Error Reporting System
An Easy Way to Report Regression Analysis
Generate "LaTeX"" Tables of Descriptive Statistics
R Interface to 'EPP-Lab', a Java Program for Exploratory
Projection Pursuit
Determine the representativity of two multidimensional data sets
Create Representative Records After Entity Resolution
Prepare Reproducible Example Code via the Clipboard
Reproduce Statistical Analyses and Meta-Analyses
A Set of Tools that Enhance Reproducibility Beyond Package
Management
Coordinate System Transformations for Generic Map Data
Examples of Recursive Lists and Nested or Split Data Frames
Powerful Classes for HTTP Requests and Responses
Installing and Loading R Packages for Reproducible Workflows
Helper Package to Install Packages for R
General Purpose Client for 'ERDDAP' Servers
Extracts Environmental Data from 'ERDDAP' Web Services
Reordering and/or Reflecting Factors for Simulation Studies with
Exploratory Factor Analysis
Data Sets for Mathematical Statistics with Resampling in R
Bootstrap Imputation for Single-Cell RNA-Seq Data
Retrieving Publications from PubMed Database Based on User Query
Tools for Analysis, Design, and Operation of Water Supply
Storages
Simulate Agricultural Production and Evolution of Pesticide
Resistance
Flexibly Reshape Data: A Reboot of the Reshape Package
Electrical Properties of Resistor Networks
Resource Selection (Probability) Functions for Use-Availability
Data
Tools for Conducting and Analyzing Respirometry Experiments
Screening for Careless Responding Patterns
Search and Retrieve Data from Eurostat Database
Functions for Working with the 'www.estimize.com' Web Services
Multivariate Normal Restricted by Affine Constraints
Restricted Statistical Estimation and Inference for Linear
Models
Generate Disease-Specific Response Signatures from the
LINCS-L1000 Data
Tools for Type S (Sign) and Type M (Magnitude) Errors
Import Professional Baseball Data from 'Retrosheet'
Argument Table Generation for Sensitivity Analysis
Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Revealed Preferences and Microeconomic Rationality
R Markdown Format for 'reveal.js' Presentations
Connect to Your 'Revenera' (Formerly 'Revulytics') Data
Linear Regression Stability to Significance Reversal
Visualization and Post-Processing of 'RevBayes' Analyses
Reverse Geocoding with the Photon Geocoder for OpenStreetMap,
Google Maps, and Bing
A Light-Weight, Portable Tool for Reviewing Individual Patient
Records
Tools for Computational Revealed Preference Analysis
Data Preparation and Diagnostics for Random Effects Within
Estimator
R Wrappers for EXPOKIT; Other Matrix Functions
Call Rust Code from R using the 'extendr' Crate
R Interface to 'FACTS' on Unix-Like Systems
A Collection of Efficient and Extremely Fast R Functions
A Collection of Efficient and Extremely Fast R Functions II
Random Forest with Canonical Correlation Analysis
Get Seismic Data from the International Federation of Digital
Seismograph Networks
Multiple Imputation using Chained Random Forests
Rapid Feasible Generalized Least Squares
Estimation of Forest Variables using the FIA Database
Automatically Generated Fish Drawings via JavaScript
'Programmatic Interface to the 'openfisheries.org' API'
Exploratory Data Analysis for FishNet2 Data
R Interface to the 'Flsgen' Neutral Landscape Generator with
Targets on Landscape Indices
Recency, Frequency and Monetary Value Analysis
Merging of Satellite Datasets with Ground Observations using
Random Forests
Graphics for Spherical Distributions and Earthquake Focal
Mechanisms
Code Examples to Accompany the Book "R for Dummies"
BATWING for Calculating Forensic Trace-Suspect Match
Probabilities
Random Forests, Linear Trees, and Gradient Boosting for
Inference and Interpretability
Estimate Permutation p-Values for Random Forest Importance
Metrics
Prediction Intervals with Random Forests and Boosted Forests
A 'FRACTRAN' Interpreter and Some Helper Functions
Feasible Solution Algorithm for Finding Best Subsets and
Interactions
Random Forests Model Selection and Performance Evaluation
Unbiased Variable Importance for Random Forests
Interactive Visualization Tool for Random Forests
Gabriel Multiple Comparison Test and Plot the Confidence
Interval on Barplot
Gamma convolutions for methylation array background correction
Interface to the Global 'Biodiversity' Information Facility API
LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network
Reconstruction
Hierarchical Modeling and Frequency Method Checking on
Overdispersed Gaussian, Poisson, and Binomial Data
Regularized and Sparse Generalized Canonical Correlation
Analysis for Multiblock Data
Preprocessing and Multivariate Analysis of Bidimensional Gas
Chromatography Data
Bindings for the 'Geospatial' Data Abstraction Library
Wrapper for 'Coinbase Pro (erstwhile GDAX)' Cryptocurrency
Exchange
R Bindings for Calling the 'Earth Engine' API
Random Sampling Distribution C++ Routines for Armadillo
Generates Multivariate Nonnormal Data and Determines How Many
Factors to Retain
Tools to Generate Daily-Precipitation Time Series
R Version of GENetic Optimization Using Derivatives
Geographic Profiling Methods for Serial Crime Analysis
Interface to Geometry Engine - Open Source ('GEOS')
Build, Import and Export GEXF Graph Files
R Interface to Global Biotic Interactions
Unsampled Data in R for Google Analytics Premium Accounts
Easy Access to the Canadian Open Government Portal
R Interface for the GPlates Web Service and Desktop Application
Data and Functions from the Book R Graphics, Third Edition
Interface Between GRASS 7 Geographical Information System and R
Consult 'Grass GIS' Documentation in the RStudio Viewer or your
Browser
Estimate the "Gremlins in the Data" Model for Conjoint Studies
Repetitive Group Sampling Plan Based on Cpk
Search and Retrieve Spatial Data from 'GUGiK'
Interface to the 'Handsontable.js' Library
Robust Hierarchical Co-Clustering to Identify Significant
Co-Cluster
Retrieve data sets from the HealthData.gov data API
A Zero Dependency 'SVG' Icon Library for 'Shiny'
Clustering Genetic Sequence Data Using the HierBAPS Algorithm
An R Implementation of the FIS MarketMap C-Toolkit
Random Heteroscedastic Nested Error Regression
Side Effect Risks in Hospital : Simulation and Estimation
Benchmarks for High-Performance Computing Environments
Heart Rate Variability Analysis of ECG Data
Ryan-Holm Step-Down Bonferroni or Sidak Procedure
Regularized Hotelling's T-square Test for Pathway (Gene Set)
Analysis
Identification of Hybrid Peptides in Immunopeptidomic Analyses
Wrapper for the 'Datamuse' API to Find Rhyming and Associated
Words
ri: R package for performing randomization-based inference for
experiments
Randomization Inference for Randomized Experiments
Randomization Inference for Treatment Effects on a Binary
Outcome
Radiomics Image Analysis Toolbox for Medial Images
Gene Annotation of Rice (Oryza Sativa L.spp.japonica)
Convert Biological ID from RAP or MSU to SYMBOL for Oryza Sativa
Computes and Compares Species Richnesses
Enrichment for Diseases in a Set of Genes
Drawing SVG Graphics to Visualize and Map Genome-Wide Data on
Idiograms
Ridge Regression with Automatic Selection of the Penalty
Parameter
R Package for Ridge Fusion in Statistical Learning
Ridit Analysis (An extension of the Kruskal-Wallis Test.)
Accesses Weather Data from the Iowa Environment Mesonet
Learning with Data on Riemannian Manifolds
Functions and C++ Header Files for Computation on Manifolds
Regression, Inference, and General Data Analysis Tools in R
An R Interface to the 'Tiingo' Stock Price API
ILO Open Data via Ilostat Bulk Download Facility or SDMX Web
Service
R's Interface to Maxima, Bringing Symbolic Computation into R
Read 'ImageJ' Region of Interest (ROI) Files
An Installation Framework for Shiny Apps
C++ Classes to Embed R in C++ (and C) Applications
View Images on Full Screen in 'RMarkdown' Documents and 'shiny'
Applications
Detects Fraud in Online Surveys by Tracing, Scoring, and
Visualizing IP Addresses
Calculate Persistent Homology with Ripser-Based Engines
Data Analysis and Parameter Estimation Using Item Response
Theory
Causal Inference and Prediction in Cohort-Based Analyses
Computes 26 Financial Risk Measures for Any Continuous
Distribution
Functions to Study Etiologic Heterogeneity
G-Computation to Estimate Interpretable Epidemiological Effects
Assessing Risk Predictions for Clustered Data
Risk Regression Models and Prediction Scores for Survival
Analysis with Competing Risks
Riskset ROC curve estimation from censored survival data
Risk Quantification for Stock Portfolios under the T-Copula
Model
Rendering Risk Literacy more Transparent
Automated Transformations, Normality Testing, and Reporting
Isothermal Titration Calorimetry (ITC) Data Analysis
Integrated Taxonomic Information System Client
River Network Distance Computation and Applications
Load Estimation of River Compounds with Different Methods
In vitro in vivo correlation linear level A
Steady and Unsteady Open-Channel Flow Computation
A Clean, Whitespace-Sensitive Template Language for Writing HTML
Artificial Intelligence Systems and Observer Performance
A Fast Clustering Algorithm for High Dimensional Data Based on
the Gram Matrix Decomposition
Provides Access to Databases Through the JDBC Interface
Interface to 'JDemetra+' Seasonal Adjustment Software
'rmarkdown' Extension for Formatted 'RJDemetra' Outputs
Quality Assessment for Seasonal Adjustment
Miscellaneous Useful Functions for Statistics
R-Interface to Gene Drop Simulation from JPSGCS
Serialize R Objects to JSON, JavaScript Object Notation
Interface to the 'JWSACruncher' of 'JDemetra+'
Using Apache 'Kafka' Messaging Queue Through 'R'
External Jars Required for Package 'rkafka'
Datasets from 'KEEL' for it Use in 'RKEEL'
Kernel Operations on GPU or CPU, with Autodiff, without Memory
Overflows
Ridge Group Sparse Optimization Problem for Estimation of a Meta
Model Based on Reproducing Kernel Hilbert Spaces
Random KNN Classification and Regression
Minicircle Sequence Cluster (MSC) Analyses
Mann-Kendall Test, Seasonal and Regional Kendall Tests
Data Exchange Between R and 'LabKey' Server
Functions for Base Types and Core R and 'Tidyverse' Features
Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Create Interactive Linked Charts with Minimal Code
Analyze and Design Repeated Low-Dose Challenge Experiments
Bayesian LDA for Mixed-Membership Clustering Analysis
Common Functions for Run-Length Encoded Vectors
Estimates, Plots and Evaluates Leaf Angle Distribution
Functions, Calculates Extinction Coefficients
R Interface to RNG with Multiple Streams
Simulations and Statistical Inference for Linear Fractional
Stable Motions
Bayesian Exponential Smoothing Models with Trend Modifications
Ensemble Empirical Mode Decomposition (EEMD) and Its Complete
Variant (CEEMDAN)
Linked Inference of Genomic Experimental Relationships
Iterative Solvers for (Sparse) Linear System of Equations
A Toolbox for Non-Tabular Data Manipulation
Robust Regression with Data Driven Tuning Parameter
Rank-Based Estimation and Prediction in Random Effects Nested
Models
R Parallel Implementation of Local Outlier Factor(LOF)
Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive
Models
Monte-Carlo Methods for Simulating Luminescence Phenomena
Solving Ordinary Differential Equations to Understand
Luminescence
'Shiny' Applications for the R Package 'Luminescence'
Weighted Rasch Modeling and Extensions using Conditional Maximum
Likelihood
Exact Confidence Intervals for Random Effects Meta-Analyses
MAGIC - Markov Affinity-Based Graph Imputation of Cells
Makefile Generator for R Analytical Projects
Fit Multi-Modal Mallows' Models to Ranking Data
Continuous Optimization using Memetic Algorithms with Local
Search Chains (MA-LS-Chains) in R
Client for 'mapshaper' for 'Geospatial' Operations
Client for 'Mapzen' and Related Map APIs
Calculate 3D Contour Meshes Using the Marching Cubes Algorithm
Detect Marine Heat Waves and Marine Cold Spells
Performing Bayesian Inference for Repeated-Measures Designs
The MCFS-ID Algorithm for Feature Selection and Interdependency
Discovery
Kuhn-Tucker and Multiple Discrete-Continuous Extreme Value
Models
HTML Output Formats and Templates for 'rmarkdown' Documents
Partial 'rmarkdown' Documents to Prettify your Reports
'R' 'Markdown' Format for 'shower' Presentations
Count Words, Chars and Non-Whitespace Chars in R Markdown Docs
Synchrony in Motion Energy Analysis (MEA) Time-Series
Multiple Imputation with Denoising Autoencoders
Data Mining Classification and Regression Methods
A Robust Missing Imputation Method for Gene Expression Data
Combining Mixture Components for Clustering
Mixture Models with Heterogeneous and (Partially) Missing Data
Minimal Interface of the C++ 'MixtComp' Library for Mixture
Models with Heterogeneous and (Partially) Missing Data
Utility Functions for 'MixtComp' Outputs
Maximum Likelihood Principal Component Analysis
Connect R with MOA for Massive Online Analysis
R MPFR - Multiple Precision Floating-Point Reliable
Interface (Wrapper) to MPI (Message-Passing Interface)
Recursive Modified Pattern Search on Hyper-Rectangle
Causal Mediation Analysis Using Weighting Approach
Importing Data from Loligo Systems Software, Calculating
Metabolic Rates and Critical Tensions
Root-mean-square goodness-of-fit test for simple null hypothesis
Amazing Random Facts About the World's Greatest Hacker
Quickly View Data Frames in 'Excel', Build Folder Paths and
Create Date Vectors
'Rcpp' Bindings to Native C++ Implementation of MS Numpress
Restricted Mean Time in Favor of Treatment
Signal-Noise Separation in Random Matrices by using Eigenvalue
Spectrum Analysis
Distributions, Statistics and Tests derived from Random Matrix
Theory
Utilities for Nonlinear Regression and Repeated Measurements
Models
Mappable Vector Library for Handling Large Datasets
Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS
Tool
Tools to Conduct Meteorological Normalisation on Air Quality
Data
Database Interface and 'MySQL' Driver for R
Log-Linear Poisson Graphical Model with Hot-Deck Multiple
Imputation
RNA Secondary Structure Module Mining, Comparison and Plotting
RNA Secondary Structure Comparison and Module Mining
World Vector Map Data from Natural Earth Used in 'rnaturalearth'
Image Data Used in the Loon Package Demos
Visualization of High-Throughput Data on Large-Scale Biological
Networks
Wrapper for the National Bank of Poland API
EUtils libraries for use in the R environment
Obtain, Organize, and Visualize NCEP Weather Data
Testing Neighbor Effects in Marker-Based Regressions
Interval Mapping for Quantitative Trait Loci Underlying Neighbor
Effects
Entropy Based Method for the Detection of Significant Variation
in Gene Expression Data
Provides an Interface to the Agent-Based Modelling Platform
'NetLogo'
Tools for Comparing Text Messages Across Time and Media
Semantically Rich I/O for the 'NeXML' Format
Random Number Generation for Generalized Poisson Distribution
Seeding the Default RNG with a Numeric Vector
Utility Functions for Working with Random Number Generators
Toolbox for WELL Random Number Generators
Random number generator WELL19937a with 53 or 32 bit output
Image Registration Using the 'NiftyReg' Library
A Wrapper of the 'JavaScript' Library 'Nightly'
Bayesian Network Meta-Analysis with Missing Participants
Perform the Complete Processing of a Set of Proton Nuclear
Magnetic Resonance Spectra
An R Interface to the NOAA Operational Model Archive and
Distribution System
Interface to the National 'Phenology' Network 'API'
UK National River Flow Archive Data from R
Interface to the Numerai Machine Learning Tournament API
An Incomplete Wrapper of the 'nvd3' JavaScript Library
Find Free Versions of Scholarly Publications via Unpaywall
Robust Analysis of High Dimensional Data
Interpolation Grids for Packages of the 'RobASt' - Family of
Packages
Using Block Model to Estimate the Robustness of Ecological
Network
Conditionally Unbiased Bounded Influence Estimates
Robust Bayesian Variable Selection for Gene-Environment
Interactions
Forecasting Time Series with Robust Exponential Smoothing
Optimally Robust Estimation for Extreme Value Distributions
Robust Bootstrap Forecast Densities for GARCH Models
Interface for the RobinHood.com No Commission Investing Platform
Ocean Biodiversity Information System (OBIS) Client
Innovative and/or Additive Outlier Robust Kalman Filtering
Optimally Robust Influence Curves and Estimators for Location
and Scale
Infinitesimally Robust Estimators for Preprocessing -Omics Data
Robust Generalized Linear Models (GLM) using Mixtures
Robust Nonparametric Two-Sample Tests for Location/Scale
Generation of Dynamic Coappearance Matrices Within Texts
Robustness Checks for Omitted Variable Bias
A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler'
Permissions Checker
Robust Periodogram and Periodicity Detection Methods
Three-Step Regression and Inference for Cellwise and Casewise
Contamination
Robust Regression with Compositional Covariates
Optimally Robust Influence Curves for Regression and Scale
Robust Regularized Singular Value Decomposition
Import an Observable Notebook as HTML Widget
Outlier Robust Two-Stage Least Squares Inference and Testing
Truncated Maximum Likelihood Fit and Robust Accelerated Failure
Time Regression for Gaussian and Log-Weibull Case
Robust Solution to the Behrens-Fisher Problem
Robust Bayesian Linear Mixed-Effects Models using ABC
Robust Calibration of Imperfect Mathematical Models
Collection of Robust Covariance and (Sparse) Precision Matrix
Estimators
Robust Methods using Exponential Tilt Model
An Object Oriented Solution for Robust Factor Analysis
Robust Estimation for Generalized Additive Models
Robust Gaussian Stochastic Process Emulation
Robust Methods for High-Dimensional Data
Robust Variable Selection with Exponential Squared Loss
An Extended Rao-Stirling Diversity Index to Handle Missing Data
Robust Estimation for Seemingly Unrelated Regression Models
'eXtra' / 'eXperimental' Functionality for Robust Statistics
Visualize the Results of Risk-of-Bias (ROB) Assessments
Aggregate Multiple ROC Curves into One Global ROC
Performance Assessment of Binary Classifier with Visualization
Functions for Diffusing Function Documentations into 'Roxygen'
Comments
Non-Inferiority Test for Paired ROC Curves
Work with Romanian Personal Numeric Codes PNC / CNP
ROC Curve Inference with and without Covariates
Robust Rank Correlation Coefficient and Test
Compute and Compare Diagnostic Test Statistics Across Groups
Visualizing the Performance of Scoring Classifiers
Receiver Operating Characteristic (ROC)-Guided Classification
and Survival Tree
Wrapper Functions for 'ODAM' (Open Data for Access and Mining)
Web Services
Provides Access to Databases Through the ODBC Interface
Ordinary Differential Equation (ODE) Solvers Written in R Using
S4 Classes
Identify Rogue Taxa in Sets of Phylogenetic Trees
'ROI' Optimization Problems Based on 'globalOptTests'
'ROI' Access to 'MIPLIB' 2010 Benchmark Instances
'ROI' Optimization Problems Based on 'NETLIB-LP'
'alabama' Plug-in for the 'R' Optimization Infrastructure
'Clp (Coin-or linear programming)' Plugin for the 'R'
Optimization Interface
'DEoptim' and 'DEoptimR' Plugin for the 'R' Optimization
Interface
'ECOS' Plugin for the 'R' Optimization Infrastructure
'ipop' Plug-in for the 'R' Optimization Interface
'lp_solve' Plugin for the 'R' Optimization Infrastructure
'Multi-Solution' Binary Linear Problem Plug-in for the 'R'
Optimization Interface
'NEOS' Plug-in for the 'R' Optimization Interface
'nloptr' Plug-in for the 'R' Optimization Infrastructure
'optimx' Plug-in for the 'R' Optimization Infrastructure
'osqp' Plugin for the 'R' Optimization Infrastructure
'qpOASES' Plugin for the 'R' Optimization Infrastructure
'quadprog' Plug-in for the 'R' Optimization Infrastructure
'SCS' Plug-in for the 'R' Optimization Infrastructure
'SYMPHONY' Plug-in for the 'R' Optimization Interface
Convenience Functions for Applying Basic Stats to Sub-Groups
R Markdown Output Formats for Storytelling
Construct Consistent Time Series from Textual Data
Fast Rolling and Expanding Window Linear Regression
Convert Colour Specification to Colour Name
A Colour List and Colour Metric Based on the ISCC-NBS System of
Color Designation
Finding Optimal Three-Group Splits Based on a Survival Outcome
Subroutines to Estimate Rolling Window Multiple Correlation
Read and Search Interface to the 'HL7 FHIR' REST API
R Object Oriented Programming for Statistical Distribution
Finds Roots, Extrema and Inflection Points of a Curve
Nonlinear Root Finding, Equilibrium and Steady-State Analysis of
Ordinary Differential Equations
Distribution of Largest Root for Single and Double Wishart
Settings
Regression Optimized: Numerical Approach for Multivariate
Classification and Regression Trees
Model Selection with FDR Control of Selected Variables
Download, Compile and Link 'OpenBLAS' Library with R
Helper Package for Installing OpenCV with R
Query and Download 'Rapid7' 'Cybersecurity' Data Sets
Additional Operators to Help you Write Cleaner R Code
Reproducible Data Retrieval from the Roper Center Data Archive
Low-Level Support for Provenance Capture Between in-Memory R
Objects
Optimally Robust Estimation - Old Version
General Purpose Optimization in R using C++
Optimally Robust Estimation for Regression-Type Models
Matrix Reconstruction from a Few Entries
OCI Based Oracle Database Interface for R
Extended Rosenbrock-Type Densities for Markov Chain Monte Carlo
(MCMC) Sampler Benchmarking
Parallel Use of Statistical Packages in Teaching
Plot Raster Map Tiles from Open Street Map and Other Sources
Robust Sparse PCA using the ROSPCA Algorithm
Tests for Rotational Symmetry on the Hypersphere
Interface to the 'Open Tree of Life' API
Simplification of Decision Tables using Rough Sets
Data Analysis Using Rough Set and Fuzzy Rough Set Theories
A Simple Router for HTTP and WebSocket Requests
Royston's H Test: Multivariate Normality Test
Placido Analysis of Corneal Irregularity
Confirmatory Adaptive Clinical Trial Design and Analysis
Interact with the 'PADRINO' IPM Database
Automatic Detection of Experimental Unit in Precision
Agriculture
Simple Interactive Controls for R using the 'tcltk' Package
Download and Merge Single-Cell RNA-Seq Data from the PanglaoDB
Database
Recursive Partitioning and Regression Trees
Least Absolute Deviation Regression Trees
Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Tools for parsing and manipulating rpart objects, including
generating machine readable rules
Classification trees for ordinal responses
Recognising Visual Charting Patterns in Time Series Data
RobustPCA: Decompose a Matrix into Low-Rank and Sparse
Components
Tools for the Construction of Clinical Code Lists for Primary
Care Database Studies
RPCLR (Random-Penalized Conditional Logistic Regression)
Read, Write, Visualize and Manipulate PDB Files
Tools for Chromatographic Column Characterization and Modelling
Chromatographic Peak
Gamma and Exponential Generalized Linear Models with Elastic Net
Penalty
Computation and Plots of Influence Functions for Risk and
Performance Measures
Estimates of Standard Errors for Risk and Performance Measures
Reduced Piecewise Exponential Estimate/Test Software
Phylogenetic Comparative Tools for Missing Data and
Within-Species Variation
Get 'Silhouettes' of 'Organisms' from 'Phylopic'
Build Powerful Pivot Tables and Dynamically Slice & Dice your
Data
Interface to the Search API for 'PLoS' Journals
Bayesian Age-Depth Modelling of Cores Dated by Pb-210
Graphical User Interface (GUI) for Interactive R Analysis
Sessions
Recursive Partitioning for Modeling Survey Data
R Interface to the 'PostgreSQL' Database System
Sample Size Computations Controlling the Type-II Generalized
Family-Wise Error Rate
Resolvable partially pairwise balanced design and Space-filling
design via association scheme
Reads, Annotates, and Normalizes Reverse Phase Protein Array
Data
Reverse-Phase Protein Array Super Position and Concentration
Evaluation
Regularized PQL for Joint Selection in GLMMs
Database Preferences and Skyline Computation
Estimating Disease Prevalence from Registry Data
Functions for Working with 'Eprime' Text Files
Bayes Estimation of Latent Class Mixed Multinomial Probit Models
WOE Transformation and Scorecard Builder
R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Rank Preserving Structural Failure Time Models
Goodness of Fit Tests for High-Dimensional Linear Regression
Models
Repeatability Estimation for Gaussian and Non-Gaussian Data
R Interface to the Pushbullet Messaging Service
Estimate the PVT Properties of Reservoir Fluids
Easy to Configure an Isolated 'Python' Environment
Quantum Entanglement of Bipartite System
Quantitative Evaluation of the Native Fertility of Tropical
Soils
Relational Query Generator for Data Manipulation at Scale
Statistical Methods for the Randomized Response Technique
Real-Time Adaptive Penalization for Streaming Lasso Models
Robust Regression with Asymmetric Heavy-Tail Noise Distributions
Estimating Replication Rate for Genome-Wide Association Studies
Connecting R and 'Raven' Sound Analysis Software
Ridge Regression and Other Kernels for Genomic Selection
Scalable Robust Estimators with High Breakdown Point
Robust Methods for Multiway Data Analysis, Applicable also for
Compositional Data
Robust Multivariate Methods for High Dimensional Data
Scalable Robust Estimators with High Breakdown Point for
Incomplete Data
Import Data from a RRD (Round Robin Database) File
'DRNG' on Intel CPUs with the 'RdRand' Instruction for R
Environment for Evaluating Recommender Systems
Visualization for Norwegian Health Quality Registries
Invoke 'Repast Simphony' Simulation Models
Realized Relatedness Estimation and Simulation
Residual Randomization Inference for Regression Models
Fitting Distributions to Given Data or Known Quantiles
Reduced-Rank Multinomial Logistic Regression for Markov Chains
Access Publisher Copyright & Self-Archiving Policies via the
'SHERPA/RoMEO' API
Phylogenetic Ridge Regression Methods for Comparative Studies
Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Correlation and Regression Analyses for Randomized Response Data
Online Robust Reduced-Rank Regression Estimation
Robust Re-Scaling to Better Recover Latent Effects in Data
Reproducible Research with a Table of R Codes
Randomized Response Techniques for Complex Surveys
Bayesian Estimation of the Reduced Reparameterized Unified Model
with Gibbs Sampling
Data related to the book "R Statistical Application Development
by Example"
Linking R with the Open-Source 'SAGA-GIS' Software
Builds Empirical Remote Sensing Models of Water Quality
Variables and Analyzes Long-Term Trends
Ports the Workflow of "Resampling Stats" Add-in to R
Random Sampling Association Rules from a Transaction Dataset
Tools, Classes, and Methods for Interfacing with SaTScan
Stand-Alone Software
Handle R Requests from R Service Bus Applications with JSON
Payloads
Part Information from the Registry of Standard Biological Parts
An R Package for Stepwise Cluster Analysis
Bridge Between 'R' and 'Scala' with Callbacks
Shadow-Test Approach to Computerized Adaptive Testing
R Source Code Similarity Evaluation by Similarity Coefficients
Scelestial: Steiner Tree Based Single-Cell Lineage Tree
Inference
SciMark 2.0 Benchmark for Scientific and Numerical Computing
Deploys Multiple 'Shiny' Apps using Configuration File
Deployment Interface for R Markdown Documents and Shiny
Applications
Generic implementation of the 'RStudio' connections contract
A Method to Download Department of Education College Scorecard
Data
Ray Shooting Depth (i.e. RS Depth) functions for bivariate
analysis
Tools for Reading SDMX Data and Metadata
Number of Newly Discovered Rare Species Estimation
Estimating the Proportion of Genetically Modified Seeds in
Seedlots via Multinomial Group Testing
Robust Structural Equation Modeling with Missing Data and
Auxiliary Variables
Strain Elevation Tension Spring Embedding
Report of Statistical Findings in 'bookdown'
SGF (Smart Game File) File Format Import
Functions for Hierarchical Bayesian Estimation: A Flexible
Approach
Simulated Haploid Asexual Population Evolution
Siena - Simulation Investigation for Empirical Network Analysis
Analysis of Simulation Studies Including Monte Carlo Error
Download Data from Mexico's Air Quality Information System
Hypothesis Testing Based on R-Size Biased Samples
Create Custom 'Rstudio' Keyboard Shortcuts
A Stemming Algorithm for the Portuguese Language
Submit R Calculations to a 'Slurm' Cluster
Loading Facebook and Instagram Advertising Data from
'Smartly.io'
Neural Networks using the Stuttgart Neural Network Simulator
(SNNS)
Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web
Import Various Northern and Southern Hemisphere Climate Indices
Adapt Numerical Records to Fit (in)Equality Restrictions
Sites, Population, and Records Cleaning Skills
Rational Approximations of Fractional Stochastic Partial
Differential Equations
Solvers for Large-Scale Eigenvalue and SVD Problems
Conversion Between Attitude Representations of DCM, Euler
Angles, Quaternions, and Euler Vectors
R's Shortest Path Problem with Forbidden Subpaths
Identify Distributions that Match Reported Sample Parameters
(SPRITE)
Database Agnostic Package to Generate and Process 'SQL' Queries
in R
Statistical Downscaling Toolkit for Climate Change Scenario
using Non Parametric Quantile Mapping
Total Mediation Effect Size Measure (R-Squared Measure) under
Moderate or High-Dimensional Mediator Settings
A Collection of Methods for Singular Spectrum Analysis
Implementations of Semi-Supervised Learning Approaches for
Classification
Simulation of Supply Reservoir Systems using Standard Operation
Policy
Client Library for SpatioTemporal Asset Catalog
Persistent Fast Amortized Stack and Queue Data Structures
Bayesian Applied Regression Modeling via Stan
Tools for Developing R Packages Interfacing with 'Stan'
Pipe-Friendly Framework for Basic Statistical Tests
STG : Feature Selection using STochastic Gates
Random Orthonormal Matrix Generation and Optimization on the
Stiefel Manifold
Simulate and Develop Streaming Processing
Tools to Read and Manipulate Fisheries Data
Smooth Survival Models, Including Generalized Survival Models
A Convenience Interface for the Stripe Payment API
Design of Rotatable Central Composite Experiments and Response
Surface Analysis
Robust Estimation of the Proportion of Treatment Effect
Explained by Surrogate Marker Information
Design and Analysis of Disease Surveillance Activities
Robust Singular Value Decomposition using Density Power
Divergence
Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays
Extract Semantic Relations from Text by Querying and Reshaping
Syntax
Manage and manipulate large collections of R objects stored as
tape-like files
Detecting Trait Clustering in Environmental Gradients
Tools for analyzing sales report files of iTunes Connect
R Templates for Reproducible Data Analyses
Tools for Tensor Analysis and Decomposition
Automatic Text Classification via Supervised Learning
Functions for calculation of texture metrics for Grey Level
Co-occurrence Matrices
Methods to Analyse Seasonal Radial Tree Growth Data
HMM-Based Model for Genotyping and Cross-Over Identification
Inequality, Welfare and Poverty Indices and Curves using the
EU-SILC Data
'STK++' Core Library Integration to 'R' using 'Rcpp'
Risk Tool Library - Trading, Risk, Analytic for Commodities
Tools to Process Point Clouds Derived from Terrestrial Laser
Scanning
Truncated Newton Function Minimization with Bounds Constraints
Create and Manage Todolist using 'Todoist.com' API
Interpolation of Data with Variable Spatial Support
Measuring Information Flow Between Time Series with Shannon and
Renyi Transfer Entropy
Datasets and Functions Relating to Star Trek
Analyze Download Logs from the CRAN RStudio Mirror
Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
Advanced and Parallel Random Number Generation via 'TRNG'
Data Analysis Tools over Space of Phylogenetic Trees Using
Tropical Geometry
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
Implementation
Shiny Apps for Plotting and Exploratory Analysis
The R Implementation of the 't-walk' MCMC Algorithm
Bayesian Inference from the Conditional Genetic Stock
Identification Model
Implementation of Unobserved Components Model (UCM)
Learn Text 'Embeddings' with 'Starspace'
R Templates from the University of Miami
Univariate GARCH-MIDAS, Double-Asymmetric GARCH-MIDAS and
MEM-MIDAS
Automatically Plot, Analyse and Revises Limits of Multiple Run
Charts
Softball Run Expectancy using Markov Chains and Simulation
Runiversal - Package for converting R objects to Java variables
and XML
Interface Utilities, Model Templates, Parallel Computing Methods
and Additional Distributions for MCMC Models in JAGS
Fast Computation of Running Statistics for Time Series
R Interface to the 'UNU.RAN' Random Variate Generators
Beautiful Graphical Representation of Multiplication Tables on a
Modular Circle
Implementation of Unsupervised Neural Architectures
Detect and Remove Unwanted Variation using Negative Controls
Testing and Plotting Procedures for Biostatistics
R-Values for Ranking in High-Dimensional Settings
Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Query 'R' Versions, Including 'r-release' and 'r-oldrel'
Search 'Vertnet', a 'Database' of Vertebrate Specimen Records
Rare Variants Association Analyses with Family Data
R Graphics Devices for Vector Graphics Output
Calling haplotype-based and variant-based pedigree
disequilibrium test for rare variants in pedigrees
High Performance Algorithms for Vine Copula Modeling
Radial Velocity Method for Detecting Exoplanets
Variable Metric Nonlinear Function Minimization
Calculates the Distance Between Voter and Multiple Polling
Locations
population control weighted rare-variants TDT
A package for accessing World Bank climate data
Detects spatial outliers using a Random Walk on Bipartite Graph
Read and Manipulate Data from 'RiverWare'
Sweave Drivers with Extra Tricks Up their Sleeve
Import and Handling for 'WhatsApp' Chat Logs
Interface for the 'Wildbook' Wildlife Data Management Framework
Download, Edit and Include Wind and Sea Currents Data in
Ecological and Evolutionary Analysis
Lazy Search in R Packages, Task Views, CRAN, the Web. All-in-One
Download
Chinese Character Frequency in Real World
R We There Yet? Visualizing MCMC Convergence in Phylogenetics
'R x C Ecological Inference With Optional Incorporation of
Survey Information'
Functions to Parse and Create XMCDA Files
Functions to Compute Chemical Reaction Similarity
Facilities for Simulating from ODE-Based Models
Combined Total and Allele Specific Reads Sequencing Study
Maximum Likelihood Shrinkage using Generalized Ridge or Least
Angle Regression
R Interface to the 'Yacas' Computer Algebra System
Legacy 'Ryacas' (Interface to 'Yacas' Computer Algebra System)
R package provide functions to translate English words into
Chinese
Companion to the Forthcoming Book - R you Ready?
Access to the YouTheria Mammal Trait Database
R Module for Working with the 'Zabbix API'
Partitioning of Individual Autozygosity into Multiple
Homozygous-by-Descent Classes
Spherical Geometry Operators Using the S2 Geometry Library
Functions for University of Auckland Course STATS 201/208 Data
Analysis
A Set of Common Tools for Seasonal to Decadal Verification
Set of Common Tools for Forecast Verification
Spatial Two Stage Least Squares Estimation
Biclustering via Sparse Singular Value Decomposition
Incorporating Stability Selection
Somatic Copy Number Alteration Analysis Using Sequencing and SNP
Array Data
Background Removal and Spectrum Identification for SERS Data
Detection of Fixations in Eye-Tracking Data
Verify the Scale, Anisotropy and Direction of Weather Forecasts
Stability Analysis in Differentially Expressed Genes
Species Abundance Distributions with Independent-Species
Assumption
Maximum Likelihood Models for Species Abundance Distributions
Selecting Auxiliary Variables in Small Area Estimation (SAE)
Model
Small Area Estimation using Hierarchical Bayesian Method
Small Area Estimation Non-Parametric Based Nadaraya-Watson
Kernel
Small Area Estimation with Measurement Error
Stochastic Approximation Expectation Maximization (SAEM)
Algorithm
Small Area Estimation for Rao and Yu Model
Simulation Tools for Small Area Estimation
Shape Analysis for AI-Reconstructed Images
Encrypt and Decrypt Strings, R Objects and Files
Charts for Monitoring Clinical Trial Safety
Interactive Graphics for Monitoring Clinical Trial Safety
Applied Statistics for Economics and Management with R
Clustering via Stochastic Approximation and Gaussian Mixture
Models
Akaike Information Criterion for Sparse Estimation
An Extension of the Taylor Diagram to Two-Dimensional Vector
Data
Sensitivity Analysis for Binary Missing Data
Provides Access to Salem Witchcraft Data
Elastic Net and (Adaptive) Lasso Penalized Sparse Asymmetric
Least Squares (SALES) and Coupled Sparse Asymmetric Least
Squares (COSALES) using Coordinate Descent and Proximal
Gradient Algorithms
An Implementation of 'Salesforce' APIs Using Tidy Principles
Search Algorithms and Loss Functions for Bayesian Clustering
Selection and Misclassification Bias Adjustment for Logistic
Regression Models
A Collection of Techniques Correcting for Sample Selection Bias
A Semi-Supervised Method for Prediction of Phenotype Event Times
Sample Design, Drawing & Data Analysis Using Data Frames
A Framework for Comparing the Performance of MCMC Samplers
Sample Size Calculation for Various t-Tests and Wilcoxon-Test
Sample Size Calculation for the Comparison of Means or
Proportions in Phase III Clinical Trials
Sample Size Calculations for Complex Surveys
Power and Sample Size Calculation for the
Cochran-Mantel-Haenszel Test
Sample Size and Power Calculations for Case-Control Studies
Sample size calculations for normal means
Calculating sample size requirements when estimating the
difference between two binomial proportions
Draw Stratified Samples from the VADIR Database
Sampling Data Within Different Study Designs for Cluster
Randomized Trials
Optimal Stratification of Sampling Frames for Multipurpose
Sampling Surveys
Sample Size for Validation of Risk Models with Binary Outcomes
Sampling Surface Simulation for Areal Sampling Methods
SAM: Significance Analysis of Microarrays
Merge-Split Samplers for Conjugate Bayesian Nonparametric Models
Sensitivity Assessment to Unmeasured Confounding with Multiple
Treatments
Stochastic Augmentation of Matched Data Using Restriction
Methods
Sensitivity Analysis of a Meta-analysis with Unpublished but
Registered Analytical Investigations
Statistical Models for the Unsupervised Segmentation of
Time-Series ('SaMUraiS')
Statistical Analysis of Network Data with R, 2nd Edition
Probabilistic Numerical Modelling of Sediment Properties
Downloads and Tidies the San Francisco Public Utilities
Commission Beach Water Quality Monitoring Program Data
C/C++ source code to trigger Address and Undefined Behaviour
Sanitizers
Keeps Track of all Performed Sanity Checks
Illustrate the Flow of Information or Material
Create Dependency Wheels and Sankey Diagrams
Stratified Analysis with Nonparametric Covariable Adjustment
Color Palettes Based on the Works of Sanzo Wada
Spectral Analysis for Physical Applications
Group Ordinal Method for Multiple Criteria Decision-Making
Import Air Quality Monitoring Data in a Fast and Easy Way
Simulation and Prediction with Seasonal ARIMA Models
Network-Based Interpretation of Changes in Compositional Data
XML Output Functions for Easy Creation of Moodle Questions
Snow Profile Analysis for Snowpack and Avalanche Research
Snow Profile Alignment, Aggregation, and Clustering
Fit and Compare Species-Area Relationship Models Using
Multimodel Inference
Import ASCII files directly into R using only a SAS input script
Data sets from "SAS System for Mixed Models"
Syntactically Awesome Style Sheets ('Sass')
Scientific Analysis of Trial Errors (SATE)
Handling and Manipulating Remote Sensing Data
Visualisation and Analysis of Ocean Data Derived from Satellites
Spanning Trees Used for Network Inference
Inference and Learning in Stochastic Automata
Bayesian Emulation, Calibration and Validation of Computer
Models
Single-Cell RNA-Seq Gene Expression Recovery
Comparing Sequences with Non-Uniform Time Intervals
Small-Sample Adjustments for Wald Tests Using Sandwich
Estimators
Parameter-Free Domain-Agnostic Season Length Detection in Time
Series
Search Best ARIMA, GARCH, and MS-GARCH Model
Estimation of the Proportion of SB Explained by Confounders
Semiparametric Bayesian Gaussian Copula Estimation and
Imputation
Computing the Singular BIC for Multiple Models
Structural Bayesian Information Criterion for Graphical Models
sbioPN: Simulation of deterministic and stochastic spatial
biochemical reaction networks using Petri Nets
Sparse Bayesian Learning for QTL Mapping and Genome-Wide
Association Studies
Scalable Bayes with Median of Subset Posteriors
Semidefinite Programming for Fitting Block Models of Equal Block
Sizes
Inference for a Generalised SBM with a Split Merge Sampler
Text Prediction via Stupid Back-Off N-Gram Models
Machine Learning with AdaBoost on Decision Stumps
Detecting structural breaks using rectangle covering
(non-parametric method)
Satorra-Bentler Scaled Chi-Squared Difference Test
Stable Balancing Weights for Causal Inference and Missing Data
Spatial Clustering with Hidden Markov Random Field using
Empirical Bayes
Scaffolding Interfaces to Packages in Other Programming
Languages
Compute scagnostics - scatterplot diagnostics
Scale Alignment for Between-Items Multidimensional Rasch Family
Models
Approximately Unbiased P-Values via Multiscale Bootstrap
Single-Case Data Analyses for Single and Multiple Baseline
Designs
Shape-Constrained Additive Regression: a Maximum Likelihood
Approach
Summary Based Conditional Association Test
Create Scatter Plots with Marginal Density or Box Plots
'Htmlwidget' for a Scatter Plot Matrix & Multiple Scatter Plot
Identifies Mean, Variance, and Hierarchically Clustered
Biclusters
Single Cell Genomics for Enhancing Cell Composition Inference
from Bulk Genomics Data
Simultaneous Confidence Bands for the Mean of Functional Data
Single-Cell Clustering using Autoencoder and Network Fusion
Stochastic Complexity-Based Conditional Independence Test for
Discrete Data
The Self-Consistent, Competing Risks (SC-CR) Algorithms
Single-Cell Decomposition using Hierarchical Autoencoder
Estimating Hierarchical Linear Models for Single-Case Designs
Differential Analysis of Intercellular Communication from
scRNA-Seq Data
Construct Reduced Trees with Predefined Nodal Structures
Single Cell Entropy Analysis of Gene Heterogeneity in Cell
Populations
Stellar CharactEristics Pisa Estimation gRid
Stellar CharactEristics Pisa Estimation gRid for Binary Systems
Supervised Component Generalized Linear Regression
Analyse Citation Data from Google Scholar
Functions and datasets for math used in school
Tools for Analyzing Factorial Experiments
The Entire Transcript from the Office in Tidy Format
Schloss Lab Tools for Reproducible Microbiome Research
Standardized Climate Indices Such as SPI, SRI or SPEI
Colour Palettes Based on the Scientific Colour-Maps
Visualize 'Reproducibility' and 'Replicability' in a Comparison
of Scientific Studies
Visualize the Basic Characteristics of Single-Cell Immune
Repertoire
A Semi-Supervised Category Identification and Assignment Tool
Interpretation of Heterogeneous Single-Cell Gene Expression Data
Scientific Graphing Functions for Factorial Designs
Summarize Data for Scientific Publication
Inferring Functional Gene Co-Expression Networks from Single
Cell Data
R Toolbox for Unsupervised Spectral Clustering
Fitting Discrete Distribution Models to Count Data
Spectral Clustering-Based Method for Identifying B Cell Clones
A Package to Score Behavioral Questionnaires
Score Test Integrated with Empirical Bayes for Association Study
Score Persons Using the Generalized Graded Unfolding Model
Peak Functions for Peak Detection in Univariate Time Series
Implementation of SCORE, SCORE+ and Mixed-SCORE
SCORER 2.0: an algorithm for distinguishing parallel dimeric and
trimeric coiled-coil sequences
Scoring Rules for Parametric and Simulated Distribution
Forecasts
Utilities for Scoring and Assessing Predictions
Semi-Supervised Calibration of Risk with Noisy Event Times
Inferring Developmental Chronologies from Single-Cell RNA
Sequencing Data
The Scott-Knott Effect Size Difference (ESD) Test
Implements the Scout Method for Covariance-Regularized
Regression
Functions for Planning and Managing Inventories in a Supply
Chain
Shrinking Characteristics of Precision Matrix Estimators
Metrics for Benchmarking scRNA-Seq Batch Correction
Tools for Scraping Data from HTML and XML Documents
Screen and clean variable selection procedures
Analysis of High-Dimensional Categorical Data Such as SNP Data
An Accurate Simulator for Single-Cell RNA Sequencing Data
Transcript-Based Unit Tests that are Easy to Create and Maintain
Determine a Script's Filename from Within the Script Itself
A Pipeline to Process Single Cell RNAseq Data
Single Cell RNA Sequencing Data Analysis Tools
Animate 'shiny' Elements when They Scroll into View using the
'scrollrevealjs' Library
Performs Bayesian Variable Selection on the Covariates in a
Semi-Competing Risks Model
Key Derivation Functions for R Based on Scrypt
In-Silico Knockout Experiments from Single-Cell Gene Regulatory
Networks
Construct and Compare scGRN from Single-Cell Transcriptomic Data
Extensions for Synthetic Controls Analysis
Variance Stabilizing Transformations for Single Cell UMI Data
Diving Calculations and Decompression Models
Utility Functions for Single-Cell RNA Sequencing Data
Balancing Multiclass Datasets for Classification Tasks
Shrinkage Discriminant Analysis and CAT Score Variable Selection
Spatially Discrete Approximation to Log-Gaussian Cox Processes
for Aggregated Disease Count Data
Datasets and Functions for 'Sampling: Design and Analysis, 3rd
Edition'
Create and (Interactively) Modify Nested Hierarchies
Tools for Statistical Disclosure Control in Research Data
Centers
Statistical Disclosure Control Methods for Anonymization of Data
and Risk Estimation
Statistical Disclosure Control for Spatial Data
Methods for Statistical Disclosure Control in Tabular Data
Statistical Disclosure Control Substitution Matrix Calculator
Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome
Similarity Networks
Simulation and Inference for Stochastic Differential Equations
Synthesizing List of Differentially Expressed Features
Subgroup Discovery with Evolutionary Fuzzy Systems
Statistical Tools for Toroidal Diffusions
Filtering and Assessing the Sample Size of Tracking Data
A User-Friendly Application for Species Distribution Modeling
Species Distribution Modelling Predictor Datasets
Create Virtual Species for Species Distribution Modelling
M-Estimator for Threshold Spatial Dynamic Panel Data Model
Scale-Dependent Hyperpriors in Structured Additive
Distributional Regression
Measures of Risk for the Compound Poisson Risk Process with
Diffusion
Semi-Definite Quadratic Linear Programming Solver
Species Distribution and Stability Future Models
Scenario Discovery Tools to Support Robust Decision Making
Scalable Exact Algorithm for Large-Scale Set-Based
Gene-Environment Interaction Tests
Lasso, Group Lasso, and Sparse-Group Lasso for Mixed Models
Seasonal Analysis and Graphics, Especially for Climatology
Score Equity Assessment- summary index computation
Toolbox for Clumped Isotope Seasonality Reconstructions
Seasonality Variation Plots of Stock Prices and Cryptocurrencies
Graphical User Interface for Seasonal Adjustment
Statistical Estimation of Cluster Parameters (SECP)
Sampling Design for Spatially Explicit Capture-Recapture
Share Sensitive Information in R Packages
Encrypt Text Using a Shifting Substitution Cipher
Spatially Explicit Capture-Recapture for Linear Habitats
Several Examined and Concealed States-Dependent Speciation and
Extinction
Handling of Data from the Clinical Data Management System
'secuTrial'
Visualisation Toolbox for 'easystats' and Extra Geoms, Themes
and Color Palettes for 'ggplot2'
Access Data from the SeeClickFix Web API
View Colors Used in R Objects in the Console
Seed Germination and Seedling Growth Indexes
Hydro and Thermal Time Seed Germination Models in R
Regression Analysis for Seed Germination as a Function of
Temperature
Estimate Hidden Inputs using the Dynamic Elastic Net
SEER and Atomic Bomb Survivor Data Analysis Tools
A Quick Way to Map U.S. Rates and Data of U.S. States, Counties,
Census Tracts, or Seer Registries using 2000 and 2010 U.S.
Census Boundaries
Supplemental U.S. 2010 Census Tract Boundaries for 20 Eastern
States (including DC and PR) without Registries for
'SeerMapper'
Supplemental U.S. 2010 Census Tract Boundaries for 19 States
with Seer Registries for 'SeerMapper'
Supplemental U.S. 2010 Census Tract Boundaries for 13 Western
States without Seer Registries for 'SeerMapper'
Supplemental U.S. 2000 Census Tract Boundaries for 20 States,
District and Territory without Seer Registries that are East of
the Mississippi River for Use with 'SeerMapper' Package
Supplemental U.S. 2000 Census Tract Boundaries for 19 States
with Seer Registries for 'SeerMapper'
Supplemental U.S. 2000 Census Tract Boundaries for 13 Western
States without Seer Registries for 'SeerMapper'
Bivariate Segmentation/Clustering Methods and Tools
Environmental Inequality Indices Based on Segregation Measures
Determine Event Boundaries in Event Segmentation Experiments
Regression Models with Break-Points / Change-Points Estimation
Similarity-Based Segmentation of Multidimensional Signals
Multiple Change-Point Detection for High-Dimensional GARCH
Processes
Modeling Non-Continuous Linear Responses of Ecological Data
Segregation Analysis for Variant Interpretation
Predict Information Cascade by Self-Exciting Point Process
Fast Rolling Functions for Seismology using 'Rcpp'
An Information About Deputies and Votings in Polish Diet from
Seventh to Eighth Term of Office
KoNLP static dictionaries and Sejong project resources
Post-Selection Inference for Generalized Linear Models
Determines Species Probabilities Based on Functional Traits
Analysis of Field and Laboratory Foraging
A General Algorithm to Enhance the Performance of Variable
Selection Methods in Correlated Datasets
Analysis of Selection Index in Plant Breeding
A Tool for Calculation and Optimization of the Expected Gain
from Multi-Stage Selection
Estimation of Weight Functions in Meta Analysis
Translate CSS Selectors to XPath Expressions
Select Point Pattern Models Based on Minimum Contrast, AIC and
Goodness of Fit
R Client Implementing the W3C WebDriver Specification
A Structural Equation Embedded Likelihood Framework for Causal
Discovery
Select Features Reliably with Cohen's Effect Sizes
Genotype Probabilities in Intermediate Generations of Inbreeding
Through Selfing
Selective Inference for Mixed and Additive Model Estimators
Regularization for Variable Selection in Model-Based Clustering
and Discriminant Analysis
Dashboard with Fomantic UI Support for Shiny
A Data-Driven Similarity Kernel on Probability Spaces
Automatic Calculation of Effects for Piecewise Structural
Equation Models
Network Analysis and Causal Inference Through Structural
Equation Modeling
Hierarchical Models for Parametric and Semi-Parametric Analyses
of Semi-Competing Risks Data
Identifiability of Linear Structural Equation Models
Solve Semi-Parametric Estimation by Implicit Profiling
Building and Estimating Structural Equation Models
Bayesian Structural Equation Modeling in Multiple Omics Data
Integration
Constructing and Interacting with Databases of Presentations
Methods and Measures for Semantic Network Analysis
An Automated Cleaning Tool for Semantic and Linguistic Data
Dictionaries for the 'SemNetCleaner' Package
Path Diagrams and Visual Analysis of Various SEM Packages'
Output
Structural Equation Modeling Using Partial Least Squares
Customizing Structural Equation Modelling Plots
A Tool for Sensitivity Analysis in Structural Equation Modeling
Semiparametric Estimation of Stochastic Frontier Models
Useful Tools for Structural Equation Modeling
Recursive Partitioning for Structural Equation Models
Find, Download and Process Sentinel-2 Data
Automatic Stacked Ensemble for Regression Tasks
Sensitivity Analysis Tools for Regression Models
Access to 'Sensibo Sky' API V2 for Air Conditioners Remote
Control
Sensitivity Analysis for Comparative Methods
Global Sensitivity Analysis of Model Outputs
Sensitivity Analysis for 2x2xk Tables in Observational Studies
A Calibrated Sensitivity Analysis for Matched Observational
Studies
Sensitivity Analysis for Case-Control Studies
Sensitivity Analysis for Full Matching in Observational Studies
Sensitivity Analysis for Observational Studies with Multiple
Outcomes
Sensitivity Analysis in Observational Studies
Sensitivity analysis using weighted M-statistics
Principal Stratification Sensitivity Analysis Functions
Parametric Estimation and Sensitivity Analysis of Direct and
Indirect Effects
Computation of Variance-Based Sensitivity Indices
Simultaneous Model-Based Clustering and Imputation via a
Progressive Expectation-Maximization Algorithm
Thurstonian Models for Sensory Discrimination
Sensitivity Analysis for Stratified Observational Studies
Text Tokenization using Byte Pair Encoding and Unigram Modelling
Parsimonious Mixtures of MSEN and MTIN Distributions
An Integrated Framework for Textual Sentiment Time Series
Aggregation and Prediction
Maximum Likelihood Estimation and Likelihood Ratio Test
Functions for Separable Variance-Covariance Structures
Improved Standard Evaluation Interfaces for Common Data
Manipulation Tasks
Sequential Allocation for Prospective Experiments
Copy Number Profiling using Sequencing and CBS
Simulation and Group Sequential Monitoring of Randomized
Two-Stage Treatment Efficacy Trials with Time-to-Event
Endpoints
Sequential Method for Classification and Generalized Estimating
Equations Problem
Sequential Experimental Design via Matching on-the-Fly
A Tool to Associate FASTA Sequences and Features
Miscellaneous Tools for Sequence Analysis
Mixture Hidden Markov Models for Social Sequence Data and Other
Multivariate, Multichannel Categorical Time Series
Biological Sequences Retrieval and Analysis
Network Module-Based Model in the Differential Expression
Analysis for RNA-Seq
Efficiently Read Sequence Data (VCF Format, BCF Format, METAL
Format and BGEN Format) into R
Group Sequential Design Class for Clinical Trials
Generate RNA-Seq Data from Gene-Gene Association Networks
Fast and Comprehensive K-Mer Counting Package
Simulation and visualization of restriction enzyme cutting
pattern from DNA sequences
Exact Bayesian Model Selection Methods for the Sparse Normal
Sequence Model
Exact Sequential Analysis for Poisson and Binomial Data
Observational Database Study Planning using Exact Sequential
Analysis for Poisson and Binomial Data
Copy Number Estimation from Tumor Genome Sequencing Data
Tools to Transform and Query Data with Apache Drill
Infrastructure for Ordering Objects Using Seriation
Lower Confidence Bounds for Binomial Series System
Estimating Infection Rates from Serological Data
Smooth Effects on Response Penalty for 'CLM'
Bayesian Modelling of Raman Spectroscopy
Analyze Data Generated from Syntech Servosphere Trials
A Simple HTTP Server to Serve Static Files or Dynamic Documents
Spatially Explicit Structural Equation Modeling
Functions for interacting with, saving and restoring R sessions
Functions for Set-Theoretic Multi-Method Research and Advanced
QCA
Set (Normal) Random Number Generator and Seed
Sets, Generalized Sets, Customizable Sets and Intervals
Group Testing Procedures for Signal Detection and
Goodness-of-Fit
Customise 'Shiny' Disconnected Screens and Error Messages
Advanced Methods for Stochastic Frontier Analysis
Read/Write Simple Feature Objects ('sf') with 'Apache' 'Arrow'
Constrained Triangulation for Simple Features
Sequential Full Factorial-Based Latin Hypercube Design
Converts Between R Objects and Simple Feature Objects
Straightforward Filtering Index for AP-MS Data Analysis (SFINX)
San Francisco International Airport Monthly Air Passengers
Utilities from 'Seminar fuer Statistik' ETH Zurich
Functions for Systems Factorial Technology Analysis of Data
Space Filling Based Tools for Data Mining
Modern Classes for Tracking and Movement Data
Extract Information from Google's "Popular Times"
Survival Extension of the Generalized Berk-Jones Test
Stochastic Gradient Descent for Scalable Estimation
An Object-Oriented Framework for Geostatistical Modeling in S+
Fit a GLM (or Cox Model) with a Combination of Lasso and Group
Lasso Regularization
Fitting Semi-Parametric Generalized log-Gamma Regression Models
An R package for power and boundary calculations in
pre-licensure vaccine trials using a sequential generalized
likelihood ratio test
Stochastic Gradient Markov Chain Monte Carlo
Solves a Generic Stochastic Growth Model with a Representative
Agent
Sparse Gaussian Markov Random Field Mixtures for Anomaly
Detection
Simple Geographical Operations (with OSGB36)
Student Growth Percentiles & Percentile Growth Trajectories
Exemplar Data Sets for Student Growth Percentiles (SGP) Analyses
Sparse Group Partial Least Square Methods
Calculate Second-Generation p-Values and Associated Measures
Seasonal Generalized Space Time Autoregressive (S-GSTAR) Model
Random Partition Distribution Indexed by Pairwise Information
Functions for Plotting Graphical Shapes, Colors
Change-Point Estimation using Shape-Restricted Splines
M-Estimation of Shape for Data with Missing Values
Collection and Analysis of Otolith Shape Data
Standardised Rigid Rotations of Articulated Three-Dimensional
Structures
Shape Selection for Landsat Time Series of Forest Dynamics
Shapley Value Regression for Relative Importance of Attributes
Prediction Explanation with Dependence-Aware Shapley Values
Statistical Significance of the Sharpe Ratio
Penalized Data Sharpening for Local Polynomial Regression
Estimating Regulatory Scores and Identifying ATAC-STARR Data
Models and Data Sets for the Study of Species-Area Relationships
Estimate the Shattering Coefficient for a Particular Dataset
Tools to Support the Sheffield Elicitation Framework
Builds Chronologies from Oxygen Isotope Profiles in Shells
Bivalve Growth and Trace Element Accumulation Model
Exactly Computing the Tail of the Poisson-Binomial Distribution
Fast Enrichment Analysis via Circular Permutations
Inference in Regressions with Shift-Share Structure
Lorem-Ipsum Helper Function for 'shiny' Prototyping
Optional Login and Registration Module System for ShinyApps
Basic Routing for Shiny Web Applications
Delegate Jobs for Shiny Web Applications
'WebVR' Data Visualizations with 'RStudio Shiny' and 'Mozilla
A-Frame'
Easily Create Pretty Popup Messages (Modals) in 'Shiny'
Bootstrap 2 Web Components for Use with Shiny
Graphical User Interface ('shiny' App) for 'brms'
Combined Slider and Numeric Input for 'Shiny'
A Wrapper of the 'React' Library 'Chakra UI' for 'Shiny'
Add Loading Animations to a 'shiny' Output While It's
Recalculating
Create Interactive Network Visualizations in R and 'shiny'
Add More 'AdminLTE2' Components to 'shinydashboard'
Show a Nice Message When a 'Shiny' App Disconnects or Errors
Add a Download Button to a 'shiny' Plot or 'plotly'
Customize Your Web Apps with Fancy Effects
A Server-Side File System Viewer for Shiny
Use Interdependent Filters on Table Columns in Shiny Apps
Display 'HTML' Elements on Full Screen in 'Shiny' Apps
Easily Add Markdown Help Files to 'shiny' App Elements
Progress Bars for Downloads in 'shiny' Apps
Image Manipulation, with an Emphasis on Journaling
Item Response Theory Analysis with a 'shiny' Application
'jQuery UI' Interactions and Effects for Shiny
Easily Improve the User Experience of Your Shiny Apps in Seconds
An Interactive Application for ODE Parameter Inference Using
Gradient Matching
Record Everything that Happens in a 'Shiny' Application
Bootstrap Landing Home Pages for Shiny Applications
Authentication Management for 'Shiny' Applications
Implement Material Design in Shiny Applications
Compare and Merge Two Files with a 'Shiny' App
Export Domain Logic from Shiny using Meta-Programming
Compare Supervised Machine Learning Models Using Shiny App
Mobile Ready 'shiny' Apps with Standalone Capabilities
Molecular Biology Visualization Tools for 'Shiny' Apps
'RStudio' Addin for Building Shiny Apps per Drag & Drop
Data Insights Through Inbuilt R Shiny App
Shiny User Interface for Multiple Source Capture Recapture
Models
Gadget to Use the Data Preprocessing 'recipes' Package
Interactively
Capture Screenshots of Entire Pages or Parts of Pages in 'Shiny'
Shiny Searchbar - An Input Widget for Highlighting Text and More
Creates an Executable Shortcut for Shiny Applications
Interactive Plotting for Mathematical Models of Infectious
Disease Spread
Interactive Visual and Numerical Diagnostics and Posterior
Analysis for Bayesian Models
Functions to Minimize Bonehead Moves While Working with 'shiny'
Update Browser Window Title in 'shiny' Session
SHrinkage covariance Incorporating Prior knowledge
Miscellaneous Functions from Alexey Shipunov
Slope Heuristic for Block-Diagonal Covariance Selection in High
Dimensional Gaussian Graphical Models
Useful Shortcuts to Interact with 'RStudio' Scripts
Convert a SpatialLinesDataFrame Object to an 'igraph'-Class
Object
Global, Parameterwise and Joint Shrinkage Factor Estimation
Efficient Bayesian Inference for Dynamic Survival Models with
Shrinkage
Efficient Bayesian Inference for Time-Varying Parameter Models
with Shrinkage
The Shuffle Estimator for Explainable Variance
Confidence Intervals Compared via Shuffling
Systematic Identification of Bimodally Expressed Genes Using
RNAseq Data
Analysis of Single-Cell Viral Growth Curves
Quick and Easy Access Tax and Accounting Data of Brazil
Fetch Data from Plataforma +Brasil (SICONV)
Subgroup Identification Based on Differential Effect Search
Substitution and Indel Distances to Infer Evolutionary
Relationships
Signal Extraction Approach for Sparse Multivariate Response
Regression
Sieve Analysis Methods for Proportional Hazards Models
Laboratory Sieve Test Reporting Functions
Statistical Inference for Enzyme Kinetics
Estimate the Parameters of a Discrete Crisis-Bargaining Game
Interface to 'Sigma.js' Graph Visualization Library
Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations
Similarity Identification in Gene Expression
Cell Type Identification and Discovery from Single Cell Gene
Expression Data
Extract the Signed Backbones of Weighted Networks
Consistent Significance Controlled Variable Selection in
Generalized Linear Regression
Perform Exact Sign Test and Asymptotic Sign Test in Large
Samples
Quality Control Metrics for Gene Signatures
Succinct and Correct Statistical Summaries for Reports
Identify and Visualize Significantly Responsive Branches in a
Phylogenetic Tree
Statistical Inference in High Dimensional Regression
Calculate ANSI S3.5-1997 Speech Intelligibility Index
Statistical Inference of Large-Scale Gaussian Graphical Model in
Gene Networks
Common Forms for Complex Hierarchical and Relational Data
Structures
Simultaneous Inference for Linear Models
Simulation of Piecewise Linear Fuzzy Numbers
Genotype Simulations for Rare or Common Variants Using
Haplotypes from 1000 Genomes
Simulate Outcomes Using Spatially Dependent Design Matrices
Simulation-Based Inference Methods for Infectious Disease Models
Simultaneous Inference for Diversity Indices
Simulate Cognitive Diagnostic Model ('CDM') Data
Simultaneous Comparisons for Multiple Endpoints
Simulation of Correlated Data with Multiple Variable Types
Including Continuous and Count Mixture Distributions
Safe Implementation of Monte Carlo Tests
Structure for Organizing Monte Carlo Simulation Designs
Modeling and Assessing Similarity of Drug Dissolutions Profiles
Assessment of Data Trial Distributions According to the
Carlisle-Stouffer Method
Simulation of Ecological (and Other) Dynamic Systems
An Open-Source Framework for Statistical Simulations in R
Constrained Single Index Model Estimation
Simulation of Legal Exemption System for European Cartel Law
Simulation of Evolution of Enzyme Under Constraints
SIMEX- And MCSIMEX-Algorithm for Measurement Error Models
Generate Simulated Data for IRT-Enabled Exams
Simulate and Model Family Pedigrees with Structured Founders
Simulate Models Based on the Generalized Linear Model
Simulated Survival and Hazard Analysis for Time-Dependent
Exposure
A Framework for Data-Driven Stochastic Disease Spread
Simulations
Stochastic Simulation for Information Retrieval Evaluation:
Effectiveness Scores
Analysis via Simulation of Interrupted Time Series (ITS) Data
Simulation-Based Landscape Construction for Dynamical Systems
Helper Methods for 'simmer' Trajectories
Simulate Somatic Mutations in Cancer Genomes from Mutational
Processes
Subnetwork Integration for Multi-Modal Signatures
Simulation of Event Histories for Multi-State Models
Simulation of Correlated Data with Multiple Variable Types
Statistical Inference for Systems of Ordinary Differential
Equations using Separable Integral-Matching
A Method for Simulating Data from Perturbed Biological Pathways
Simulate and Plot Estimates from Cox Proportional Hazards Models
Tools to Simulate Phenotype(s) with Epistatic Interaction
Multiple Regression and Moderated Regression Made Simple
Access Color Names Using a Standardized Nomenclature
Simple Graph Data Types and Basic Algorithms
Simple Multilayer Perceptron Neural Network
Simulation of Pleiotropic, Linked and Epistatic Phenotypes
Simple Engine for Generating Reports using R
Set Up R Source Code Files for Use on Multiple Machines
Bayesian Inference and Sensitivity Analysis for Causal Effects
from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured
Confounding
Simple 'ggplot2' and 'leaflet' Visualisation with Less
Brainpower
Regression Analysis of Proportional Data Using Simplex
Distribution
Provides Tools for Working with General Simplicial Complexes
Flexible and Robust Agreement and Reliability Analyses
Simulation of Complex Synthetic Data Information
Power Analysis for Generalised Linear Mixed Models by Simulation
Simulations to Predict the Number of RAD and GBS Loci
Simulation of Recurrent Event Data for Non-Constant Baseline
Hazard
Simulation of Multivariate Linear Model Data
Simulating Multistate Movements in River/Heterogeneous
Landscapes
Simulate Pedigrees Ascertained for a Rare Disease
Tools for Simulation Studies in Parallel
'Simulates Univariate and Semi-Competing Risks Data Given
Covariates and Piecewise Exponential Baseline Hazards'
Nonparametric Simulation of RNA-Seq Data
Test Surveys by Simulating Spatially-Correlated Populations
Data Transformation or Simulation with Empirical Covariance
Matrix
Datetimes as Integers for Discrete-Event Simulations
Simulate Longitudinal Dataset with Time-Varying Correlated
Covariates
Conduct Simulation Studies with a Minimal Amount of Source Code
Simulation with Kernel Density Estimation
Simularia Tools for the Analysis of Air Pollution Data
A Constrained L1 Minimization Approach for Estimating Multiple
Sparse Gaussian or Nonparanormal Graphical Models
Simulation Tools for Planning Vitamin D Studies
A SINful Approach to Selection of Gaussian Graphical Markov
Models
An Enhanced Chart for Simple and Truthful Representation of
Single Observations over Multiple Classes
Conditional Least Squared (CLS) Method for the Model SINAR(1,1)
Sparse Identification of Nonlinear Dynamics
Create 'roxygen2' Skeleton with Information from Function Script
A Calculator for Single-Case Effect Sizes
Finding Needles (=differentially Expressed Genes) in Haystacks
(=single Cell Data)
Sum of Independent Non-Identical Binomial Random Variables
Collection of Household Survey Packages Conducted by IBGE
An R Package for Single-Index Quantile Regression
Functions for Calculating Daily Solar Radiation and
Evapotranspiration
Finding Feedback Effects in SEM and Testing for Their
Significance
Compartmental Susceptible-Infectious-Recovered (SIR) Model of
Community and Household Infection
Supplementary Item Response Theory Models
Sparse Interval Sliced Inverse Regression
Simulation of in Silico Multi-Omic Networks
Some Invalid Some Valid Instrumental Variables Estimator
Super Imposition by Translation and Rotation Growth Curve
Analysis
Site Adaptation of Solar Irradiance Modeled Series
Inferring an Animal's Sites of Interest from High Resolution
Data
Automatically Generate _site.yml File for 'R Markdown'
A Spatial Model of Intra-Tumor Heterogeneity
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header
Files
Format a number to a string with SI prefix
Six Sigma Tools for Quality Control and Improvement
Estimating the Sizes of Populations at Risk of HIV Infection
from Multiple Data Sources Using a Bayesian Hierarchical Model
Data and Variable Transformation Functions
Data Visualization for Statistics in Social Science
Collection of Convenient Functions for Common Statistical
Computations
Segment-Based Ordinary Kriging and Segment-Based Regression
Kriging for Spatial Prediction
SNP-Set (Sequence) Kernel Association Test
Utilities for SNP-Based Kinship Analysis
Sparse (Multicategory) Kernel Discriminant Analysis
Heteroskedasticity Diagnostics for Linear Regression Models
Densities and Sampling for the Skellam Distribution
Optimization of Skewed Distributions with Birth-Death Processes
The Skew Hyperbolic Student t-Distribution
Scale Mixture of Skew-Normal Linear Mixed Models
Estimation for Scale-Shape Mixtures of Skew-Normal Distributions
Estimate Sample Sizes for Group Comparisons with Skewed
Distributions
The Skillings-Mack Test Statistic for Block Designs with Missing
Observations
Measuring Agreement Using Sklar's Omega Coefficient
A Super K-Nearest Neighbor (SKNN) Classification Algorithm
Design of Experiments Suite: Generate and Evaluate Optimal
Designs
Data Analysis and Visualization for Skyscape Archaeology
Send Messages, Images, R Objects and Files to 'Slack'
Channels/Users
S-LASSO Estimator for the Function-on-Function Linear Regression
Statistical Learning for Big Dependent Data
Estimation and Use of the Quantile-Based Skew Logistic
Distribution
Software for Analyzing Limiting Dilution Assays
Semiparametric Likelihood Estimation with Errors in Variables
Statistical Learning Based Estimation of Mutual Information
Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd
Ed)"
Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd
Ed)"
Fitting a Bayesian Sparse Latent Factor Model in Gene Expression
Analysis
Sparse Logistic Functional Principal Component Analysis
Bayesian Model Selection with Suspected Latent Grouping Factors
Maximin-Distance (Sliced) Latin Hypercube Designs
Selective Locally Linear Inference of Cellular Expression
Relationships
Create Interactive Carousels with the 'JavaScript' 'Slick'
Library
Single Cell Linkage by Distance Estimation is SLIDE
Compare Raster Images Side by Side with a Slider
Singular Linear Models for Longitudinal Data
Sparse Linear Method to Predict Ratings and Top-N
Recommendations
Change-in-Slope OP Algorithm with a Finite Number of States
Stochastic Linear Ornstein-Uhlenbeck Comparative Hypotheses
A Slow Version of the Rapid Automatic Keyword Extraction (RAKE)
Algorithm
Discrete Prolate Spheroidal (Slepian) Sequence Regression
Smoothers
Scalable and Robust Latent Trajectory Class Analysis
Smoothing Methods for Nonparametric Regression and Density
Estimation
Statistical Methods for the Analysis of Case-Control Point Data
Statistical Modeling of Animal Movements
Acquisition and Processing of NASA Soil Moisture Active-Passive
(SMAP) Data
Sequential Multiple Assignment Randomized Trial and Adaptive
Randomization
Bayesian Set of Best Dynamic Treatment Regimes and Sample Size
in SMARTs for Binary Outcomes
Sequential Multiple Assignment Randomized Trial Design
Tools for Accessing Various Datasets Developed by the Foundation
SmarterPoland.pl
Sample Size for SMART Designs in Non-Surgical Periodontal Trials
Fast Multivariate Analyses of Big Genomic Data
Fast and Robust Surrogate Variable Analysis
(Standardised) Major Axis Estimation and Testing Routines
Sparse Multiple Canonical Correlation Network Analysis Tool
Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
A simple Monte Carlo optimizer using adaptive coordinate
sampling
Data Sets for Statistical Methods in Customer Relationship
Management by Kumar and Petersen (2012)
Data to Accompany Smithson & Merkle, 2013
Identification of Somatic Mutation-Driven Immune Cells
R functions and data from Chapter 5 of 'Statistical Methods for
Financial Engineering'
Filtering Algorithms for the State Space Models on the Stiefel
Manifold
Hidden Markov Random Field for Spatial Transcriptomic Data
Stochastic Modelling for Systems Biology
Statistical Methods for Interval-Censored Data
Provides two taxonomic coefficients from E. S. Smirnov
"Taxonomic analysis" (1969) book
Data Structure and Manipulations Tool for Host and Viral
Population
Visualize Data for Host and Viral Population from 'SMITIDstruct'
using 'HTMLwidgets'
Outlier Detection Using Statistical and Machine Learning Methods
Simulation and Estimation of Multi-State Discrete-Time
Semi-Markov and Markov Models
Soft Maximin Estimation for Large Scale Array-Tensor Models
Soft Maximin Estimation for Large Scale Heterogeneous Data
Simulation, Estimation and Reliability of Semi-Markov Models
The Swiss Municipal Data Merger Tool Maps Municipalities Over
Time
Fitting Univariate Censored Regression Model Under the Family of
Scale Mixture of Normal Distributions
Structural Modeling by using Overlapped Group Penalty
Small Molecule Octet/BLI Kinetics Experiment
Single and Multi-Objective Optimization Test Functions
Smoothing of Two-Dimensional Demographic Data, Optionally Taking
into Account Period and Cohort Effects
A Framework to Smooth L1 Penalized Regression Operators using
Nesterov Smoothing
Functions Relating to the Smoothing of Numerical Data
Estimation of Smooth Hazard Models for Interval-Censored Data
with Applications to Survival and Illness-Death Models
Smooth Hazard Ratio Curves Taking a Reference Value
Variable Selection Using a Smooth Information Criterion
Smoothed M-estimators for 1-dimensional location
Smooth Time-Dependent ROC Curve Estimation
Survival Regression with Smoothed Error Distribution
Smooth Estimation of GPD Shape Parameter
A Collection of Smooth Tensor Estimation Methods
Nonparametric Estimation of the Trend and Its Derivatives in TS
A Collection of Oversampling Techniques for Class Imbalance
Problem Based on SMOTE
Some Movies to Illustrate Concepts in Statistics
Practicals for Use with Davison (2003) Statistical Models
Datasets for Agresti and Finlay's "Statistical Methods for the
Social Sciences"
Sparse Multi-Type Regularized Feature Modeling
Various Multivariate Graphics with Variable Choice in Shiny Apps
The Skew-Normal and Related Distributions Such as the Skew-t and
the SUN
'RStudio' Addin for Network Analysis and Visualization
Play and Analyse the Game of Snakes and Ladders
Compress and Decompress 'Snappy' Encoded Data
Gadget N-body cosmological simulation code snapshot I/O
utilities
EM Algorithm for Multivariate Skew-Normal Distribution with
Overparametrization
Calculate and Visualize 'SNOTEL' Snow Data and Seasonality
Snowball Stemmers Based on the C 'libstemmer' UTF-8 Library
Easier cluster computing (based on snow)
Fault Tolerant Simple Network of Workstations
SNPs-Based Whole Genome Association Studies
Knockoffs for Hidden Markov Models and Genetic Data
Maximally selected statistics for SNP data
Bivariate Gaussian Genotype Clustering and Calling for Illumina
Microarrays
Preparing Genotypic Datasets in Order to Run Genomic Analysis
A Set-Based Association Test using GWAS Summary Statistics
Flexible writing of snpStats objects to flat files
Sequential Normal Scores in Statistical Process Management
Standard and Nonstandard Statistical Models and Methods for Test
Equating
Memory management in R by delayed assignments
Nonparametric Sobol Estimator with Bootstrap Bandwidth
Sobol Sequences with Better Two-Dimensional Projections
Specific Correspondence Analysis for the Social Sciences
Rank and Social Hierarchy for Gregarious Animals
Social Mixing Matrices for Infectious Disease Modelling
Generates social networks based on distance
Social Position Indicators Construction Toolbox
Operationalizing Social Determinants of Health Data for
Researchers
Utility Functions and Data Sets for Data Visualization
Functions and Examples for "Software for Data Analysis"
SODA: Main and Interaction Effects Selection for Logistic
Regression, Quadratic Discriminant and General Index Models
Interfaz interactiva con fines didacticos
Making Sophisticated and Aesthetical Figures in R
Matrix Completion via Iterative Soft-Thresholded SVD
Classification Random Forests for Soft Decision Trees
Assessment Models for Agriculture Soil Conditions and Crop
Suitability
Modelling of Soil Water Retention and Hydraulic Conductivity
Data
A System of Soil Classification for Making and Interpreting Soil
Surveys
Functions for Soil Texture Plot, Classification and
Transformation
Implementation of Parametric Formulas for Soil Water Retention
or Conductivity Curve
Apply Sojourn Methods for Processing ActiGraph Accelerometer
Data
Supporting Objects for Sojourn Accelerometer Methods
Solar Position Algorithm for Solar Radiation Applications
Utilities Dealing with Solar Time Such as Sun Position and Time
of Sunrise
Calculating Solar Radiation and Related Variables Based on
Location, Time and Topographical Conditions
Solver Suite for Alkalinity-PH Equations
Topological k-NN Classifier Based on Self-Organising Maps
General-Purpose Optimisation With the Self-Organising Migrating
Algorithm
SOM Bound to Realize Euclidean and Relational Outputs
Controlling the Generalized Familywise Error Rate
SOM Algorithm for the Analysis of Multivariate Environmental
Data
An Individual-Based Model of Bird Song Evolution
Estimating Abundance of Clones from DNA Fragmentation Data
Bioacoustic Analysis and Publication Tools
Data Sonification - Turning Data into Sound
Single Objective Optimization Benchmark Functions
Generalised Additive P-Spline Regression Models Estimation
The Sparse Online Principal Component Estimation Algorithm
Non-Parametric Estimation of the Off-Pulse Interval of a Pulsar
Sequential Optimal Designs for Two-Colour cDNA Microarray
Experiments
Estimation using Sequential Offsetted Regression
Soil Organic Carbon and CN Ratio Driven Nitrogen Modelling
Framework
A Bayesian Semiparametric Approach to Correlated ROC Surfaces
Static Adsorption Experiment Plotting and Analysis
Drag-and-Drop in 'shiny' Apps with 'SortableJS'
Estimation and Inference Methods for Sorted Causal Effects and
Classification Analysis
Search Contributed R Packages, Sort by Package
United States Presidential State of the Union Addresses
Semi-Automatic Analysis of Sound Correspondences
Stochastic Ordering Using Permutations (and Pairwise
Comparisons)
Fits a Non-Parametric Bayesian Source Attribution Model
A Graphical Model Approach to Identify Primary Genes in
Perturbed Biological Pathways
Tools for Reading, Tokenizing and Parsing R Code
Soybean Nested Association Mapping Dataset
Design and Simulation of seamless Phase II-III Clinical Trials
Space-Filling Random and Quasi-Random Sequences
Latent Space Models for Multidimensional Networks
Standard and User-Defined RGB Color Spaces, with Conversion
Between RGB and CIE XYZ
CIE XYZ and some of Its Derived Color Spaces
Classes and Methods for Spatio-Temporal Data
Easily Obtain Spatial Data and Make Better Maps
Spherical Projections of Astronomical Data
Species-Richness Prediction and Diversity Estimation with R
Develop and Run Spatially Explicit Discrete Event Simulation
Models
Development Tools for 'SpaDES' and 'SpaDES' Modules
Core Utilities for Developing and Running Spatially Explicit
Discrete Event Models
Additional Tools for Developing Spatially Explicit Discrete
Event Simulation (SpaDES) Models
Artificial Spatial and Spatiotemporal Densities on Bounded
Windows
64-Bit Extension of the SPArse Matrix R Package 'spam'
Mixed-Effect Models, with or without Spatial Random Effects
Translate Quantities from Strings to Integer and Back. Misc
Functions on Spanish Data
Perform rare variants association analysis based on summation of
partition approaches
Perform Sparse Hierarchical Clustering and Sparse K-Means
Clustering
Read in 'SAS' Data ('.sas7bdat' Files) into 'Apache Spark'
Google 'BigQuery' Support for 'sparklyr'
Interface for 'TensorFlow' 'TFRecord' Files with 'Apache Spark'
Interface for 'XGBoost' on 'Apache Spark'
Spatial and Spatiotemporal Relative Risk
Power Analysis to Detect Spatial Relative Risk Clusters
Sparse Biclustering of Transposable Data
'HJ-Biplot' using Different Ways of Penalization Plotting with
'ggplot2'
Learning Sparse Bayesian Networks from High-Dimensional Data
Utilities for Learning Sparse Bayesian Networks
Sparse and Regularized Discriminant Analysis
Computation of Sparse Eigenvectors of a Matrix
Scaling Count and Binary Data with Sparse Factor Analysis
Functional Linear Mixed Models for Irregularly or Sparsely
Sampled Data
Design of Portfolio of Stocks to Track an Index
Computation of the Sparse Inverse Subset
The Sparse Latent Position Model for Nonnegative Interaction
Data
Represent and Use Sparse + Low Rank Matrices
RcppEigen back end for sparse least trimmed squares regression
SPAtial Resolution-SEnsitive Models of Outbreak Dynamics
'Multiple Systems Estimation for Sparse Capture Data'
Multivariate Normal Functions for Sparse Covariance and
Precision Matrices
Fit Sparse Linear Regression Models via Nonconvex Optimization
Sparse Principal Component Analysis (SPCA)
Sparse Bayesian Models for Regression, Subgroup Analysis, and
Panel Data
Sparse-aware Maximum Likelihood for Structural Equation Models
Sparse Truncated Singular Value Decomposition (from 'SVDLIBC')
Solution Paths of Sparse High-Dimensional Support Vector Machine
with Lasso or Elastic-Net Regularization
Sparse Time Series Chain Graphical Models
Spike-and-Slab Variational Bayes for Linear and Logistic
Regression
Study Planning and Adaptation of Sample Size
Score Test and Meta-Analysis Based on Saddlepoint Approximation
Graph Edge Computations for Spatial Point Patterns
Functions for Kriging and Point Pattern Analysis
Blind Source Separation for Multivariate Spatial Data
Computation of Spatial Covariance Matrices for Data on
Rectangles
Spatial Analysis and Modelling Utilities
Methods and Data for Spatial Epidemiology
Kernel Density Estimation for Spatial Data
Performs spatial NBDA in a Bayesian context
Multivariate Nonparametric Methods Based on Spatial Signs and
Ranks
Tools for Assessment the Association Between Two Spatial
Processes
Easy Spatial Modeling with Random Forest
Robust Maximum Likelihood Estimation for Spatial Error Model
Spatial Analysis of Vectra Immunoflourescent Data
Spatial Early Warning Signals of Ecosystem Degradation
Formats Spatial Data for Use in Htmlwidgets
Model-Based Clustering of Spatio-Temporal Data
Inference for Spatiotemporal Partially Observed Markov Processes
Spatial Analysis of Field Trials with Splines
Group Animal Relocation Data by Spatial and Temporal
Relationship
Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Core Functionality of the 'spatstat' Family
Geometrical Functionality of the 'spatstat' Family
Interactive Graphics Functions for the 'spatstat' Package
Extension to 'spatstat' for Large Datasets on a Linear Network
Linear Networks Functionality of the 'spatstat' Family
Extension to 'spatstat' for Local Composite Likelihood
Sparse Three-Dimensional Arrays and Linear Algebra Utilities
Bayesian Spatial Survival Analysis with Parametric Proportional
Hazards Models
Univariate and Multivariate Spatial-Temporal Modeling
Bayesian Modeling and Analysis of Spatially Correlated Survival
Data
Statistical Process Control -- Calculation of ARL and Other
Control Chart Performance Measures
Statistical Process Control for Stochastic Textured Surfaces
Functions for Calibrating Control Charts
A New Reduced-Rank Linear Discriminant Analysis Method
Sparse Principal Component Analysis via Random Projections
(SPCAvRP)
Design and Analyze Studies using the Sequential Parallel
Comparison Design
Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Sparse Estimation of a Covariance Matrix
Analysis of Spatial Gradients in Radiocarbon Dates
Spatial Dependence: Weighting Schemes, Statistics
Spatial Downscaling Using Bias Correction Approach
Data Manipulation Verbs for the Spatial Classes
Spatio-Dynamic Wetland Plant Communities Model
A Wrapper for the Phonetic Software 'Praat'
Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment,
Peak Based Processing, Quantitative Analysis and Visualizations
Jackknife Euclidean / Empirical Likelihood Inference for
Spearman's Rho
A Data Specification Format and Interface
Alternative spectral clustering, with automatic estimation of k
Change Points Detection with Spectral Clustering
Statistical package for species richness estimation
Reduction of Speckle Data from BTA 6-m Telescope
Metabolomics and Spectral Data Analysis and Mining
Conducting and Visualizing Specification Curve Analyses
Single-Equation Penalized Error-Correction Selector (SPECS)
Forecast Verification Routines for Ensemble Forecasts of Weather
and Climate
Storing, Manipulating and Analysis Spectroscopy and Associated
Data
Common Methods of Spectral Data Analysis
Pre-Process, Visualize and Analyse Process Analytical Data, by
Spectral Data Measurements Made During a Chemical Process
Approximate Gaussian Processes Using the Fourier Basis
Learning Graphs from Data via Spectral Constraints
Spectra Viewer, Organizer, Data Preparation and Property Blocks
Fast Adaptive Spectral Clustering for Single and Multi-View Data
Estimation of the Relative Importance of Factors Affecting
Species Distribution Based on Stability Concept
Fitting Linear and Generalized Linear Models to Large Data Sets
Automate Code for Adding Labels, Renaming Variables, and
Converting ASCII Files
Semiparametric efficient estimation for a two-sample treatment
effect
Calculation of the Standardised Precipitation-Evapotranspiration
Index
Correct the Spelling of a Given Word in the English Language
A Bi-Dimensional Implementation of the Empirical Mode
Decomposition for Spatial Data
Auxiliary Functions to Estimate Centers of Biodiversity
Perform Spatial Error Estimation and Variable Importance
Assessment
Function-on-Scalar Regression with Group-Bridge Penalty
Feature Selection and Ranking by Simultaneous Perturbation
Stochastic Approximation
Pre-Processing and Analysis of Mid-Infrared Spectral Region
Interface Between GRASS 6+ Geographical Information System and R
Statistical Patterns in Genomic Sequences
Numerical Integration over Spheres and Balls in n-Dimensions;
Multivariate Polar Coordinates
Estimation of Spatial Autoregressive Models with and without
Heteroscedasticity
Uniformity Tests on the Circle, Sphere, and Hypersphere
A Genetic-Based Assay for the Identification of Cell Lines
Sparse Method to Identify Joint Effects of Functional Predictors
Parse and Test Robots Exclusion Protocol Files and Rules
Compute SPI Index using the Methods Genetic Algorithm and
Maximum Likelihood
Detecting Election Fraud from Irregularities in Vote-Share
Distributions
Prediction and variable selection using spike and slab
regression
Bayesian Variable Selection and Model Choice for Generalized
Additive Mixed Models
Semi-Parametric Gene-Environment Interaction via Bayesian
Variable Selection
Manual Tours, Manual Control of Dynamic Projections of Numeric
Multivariate Data
Sparse Generative Model and Its EM Algorithm
Wrapper for the Social Progress Index Data
Spatial and Space-Time Point Pattern Analysis
Simple Process-Led Algorithms for Simulating Habitats
Tools to Work with the 'Splash' 'JavaScript' Rendering and
Scraping Service
Synthetic Paid Loss and Incurred Cost Experience (SPLICE)
Simulator
Longitudinal Regression Trees and Forests
Functional Data Analysis using Splines and Orthogonal Spline
Bases
Split a Dataset for Training and Testing
Combined Evaluation and Split Access of Functions
Calculate Task Split Half Reliability Estimates
Best Split Selection Modeling for Low-Dimensional Data
Stack and Reshape Datasets After Splitting Concatenated Values
Econometric Models for Spatial Panel Data
Simultaneous Penalized Linear Mixed Effects Models
Sparse Partial Least Squares (SPLS) Regression and
Classification
Wrapper Functions for 'SPM' (Statistical Parametric Mapping)
Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'
Semiparametric Maximum Likelihood Method for Interactions
Gene-Environment in Case-Mother Control-Mother Designs
Moran Eigenvector-Based Spatial Regression Models
Linear Network Preprocessing for Spatial Statistics
Scale Invariant Probabilistic Neural Networks
Spatial Regression Models for Large Datasets using Nearest
Neighbor Gaussian Processes
Interface to Species Occurrence Data Sources
Single-Species, Multi-Species, and Integrated Spatial Occupancy
Models
Blur 'HTML' Elements in 'Shiny' Applications Using
'Spoiler-Alert.js'
SpongeBob-Case Converter : spOngEboB-CASe CoNVertER
Transform a Movie into a Synthetic Picture
Semiparametric Proportional Odds Rate Model
Sequential Pairwise Online Rating Techniques
Display Tournament Fixtures using Knock Out and Round Robin
Techniques
Plot Scaled 'ggplot' Representations of Sports Playing Surfaces
Graphical User Interface for the Package 'SPOT'
Providing Convenience Functions to Connect R with the Spotify
API
Spatiotemporal Clustering of Satellite Hot Spot Data
SPatial and Optimally Temporal (SPOT) Sampling
Combining Different Spatial Datasets in Cancer Risk Estimation
Sparse Arrays and Multivariate Polynomials
Simulating Spreading Activation in a Network
Statistical Package for Reliability Data Analysis
Bias Reduction in the Skew-Probit Model for a Binary Response
Evaluation of Sprinkler Irrigation Uniformity and Efficiency
Calculate Species Richness and Extrapolation Metrics
Sparse Group Variable Selection for Gene-Environment
Interactions in the Longitudinal Study
Sparse and Non-Sparse Partial Robust M Regression and
Classification
Wald's Sequential Probability Ratio Test
Sequential Probability Ratio Tests: Using t-Statistic
'systemPipeShiny' UI and Server Components
Selecting Spatial Scale of Covariates in Regression Models
Estimation and Prediction of Parameters of Various Soil
Hydraulic Property Models
Shape-Preserving Uni-Variate and Bi-Variate Spline Interpolation
Site Percolation on Square Lattices (SPSL)
Selection by Partitioning the Solution Paths
Spatial Seemingly Unrelated Regression Models
Bernstein Polynomial Based Semiparametric Survival Analysis
Spatially Varying and Spatio-Temporal Dynamic Linear Models
Functions for Spatial Thinning of Species Occurrence Records for
Use in Ecological Models
Predicting Totals and Weighted Sums from Spatial Data
Functions and Datasets for "Introduction to Scientific
Programming and Simulation Using R"
SPatially aUTomatic deNoising for Ims toolKit
Wrapper for 'Python' Module 'sqlparse': Parse, Split, and Format
'SQL'
Rendering Parameterized SQL and Translation to Dialects
Utilities for Generating SQL Queries from Model Objects
Squared Extrapolation Methods for Accelerating EM-Like Monotone
Algorithms
Color-Based Plots for Multivariate Visualization
Politely Web Scrape Data from SquashInfo
Group-Adaptive Elastic Net Penalised Generalised Linear Models
Statistical Quantification of Individual Differences
Simplify Connections to Database Sources
Statistical Ranking Color Scheme for Multiple Pairwise
Comparisons
Semiparametric Model-Assisted Estimation in Finite Population
Structural Equation Modeling for the Social Relations Model
Smooth-Rough Partitioning of the Regression Coefficients
Adjust Srt File to Get Better Experience when Watching Movie
'dplyr'-Like Syntax for Summary Statistics of Survey Data
Fisheries Stock Assessment Simulation Testing with Stock
Synthesis
Sample Size Adjusted for Nonadherence or Variability of Input
Parameters
Robust Correlation Estimation and Testing Based on Spatial Signs
Sample Size Determination (SSD) for Unordered Categorical Data
Tools Developed for Structured Sufficient Dimension Reduction
(sSDR)
Sample Size Computation for Fixed N with Optimal Reward
Fitting of parametric models using summary statistics
Bayesian Graphical Estimation using Spike-and-Slab Priors
Local and remote system commands with output and error capture
Searching Shared HLA Amino Acid Residue Prevalence
Nonparametric, Tuning-Free Estimation of S-Shaped Functions
Sample Size Calculations for Microarray Experiments
Sample Size Calculation for RNA-Seq Experimental Design
Semi-Supervised Classification, Regression and Clustering
Methods
Fit and Analyze Smooth Supersaturated Models
Skew Scale Mixtures of Normal Distributions
Bayesian State-Space Modeling of Mouse-Tracking Experiments via
Stan
Robust Estimation and Inference in Sample Selection Models
Scale-Shape Mixtures of Skew-Normal Distributions
Bayesian Spatio-Temporal Analysis in Stream Networks
Stream Suitable Online Support Vector Machines
Simulated Sampling Procedure for Community Ecology
Estimating Hidden Population Size using Respondent Driven
Sampling Data
Two-Dimensional Sociometric Status Determination with Rating
Scales
Sample Size Determination for Longitudinal Designs with Binary
Outcome
Sample Size Calculation using Restricted Mean Survival Time
Import Files in the Triple-s (Standard Survey Structure) Format
Same Species Sample Contamination Detection
Bootstrap Stacking of Random Forest Models for Heterogeneous
Data
Swiss Solvency Test (SST) Standard Models
Fitting Semi-Parametric log-Symmetric Regression Models
Shrinkage t Statistic and Correlation-Adjusted t-Score
Seasonal Trend Analysis for Time Series Imagery in R
Stability Analysis of Genotype by Environment Interaction (GEI)
Stabilizing Regression and Variable Selection
Probability Functions and Generalized Regression Models for
Stable Distributions
Estimate the Four Parameters of Stable Laws using Different
Methods
A Stable Gelman-Rubin Diagnostic for Markov Chain Monte Carlo
Stability Assessment of Statistical Learning Methods
Stable Specification Search in Structural Equation Models
Stability Measures for Feature Selection
Linear Regression with the Stable Distribution
Tools for Analysis of Stacked Multiple Imputations
Modelling the Population Dynamics of a Stage-Structured Species
in Continuous Time
Efficient Estimation Under Staggered Treatment Timing
Statistical Analysis of Mixed Ploidy Populations
Spatial Temporal Analysis of Moving Polygons
Bayesian Additive Regression Trees with Stan-Sampled Parametric
Extensions
Tools for Standardizing Variables for Regression in R
Ecotoxicological Information from the Standartox Database
Bayesian Mortality Modelling with 'Stan'
Simultaneous Truth and Performance Level Estimation
Well-Formatted Regression and Summary Statistics Tables
Modelling Space Time AutoRegressive Moving Average (STARMA)
Processes
Spatiotemporal Arrays, Raster and Vector Data Cubes
Miscellaneous Functions for Working with 'stars' Rasters
Single to Double Arm Transition Design for Phase II Clinical
Trials
Automatically Retrieve Multidimensional Distributed Data Sets
Vector Logistic Smooth Transition Models Estimation and
Prediction
R-Based Visualization Techniques for Task-Based Applications
Relational Data from the 'Star Wars' API for Learning and
Teaching
Interactive Document for Working with Basic Statistical Analysis
Highest Density Regions and Other Functions of Distributions
Tools Inspired by 'Stata' to Manipulate Tabular Data
Client for Statistics Canada's Open Economic Data
Extract Statistics from Articles and Recompute p Values
Statistical Complexity and Information Measures for Time Series
Analysis
Statistical Analysis for Environmental Data
Create United States Uniform Cartogram Heatmaps
High Throughput Phenotyping (HTP) Data Analysis
Single Trial Analysis (STA) of Field Trials
Detailed Meteorological Data from Stations All Over the World
Working Examples for Reproducible Research Documents
Statistical Functions for Probability Distributions and
Regression
Easy Data Manipulation, Data Quality and Statistical Checks
Software Tools for the Statistical Analysis of Network Data
Common R Scripts and Utilities Used by the Statnet Project
Software
A Graphical User Interface for Network Modeling with 'Statnet'
Use Data from the Czech Public Finance Database
Statistical Performance Measures to Evaluate Covariance Matrix
Estimates
Quotes on Statistics, Data Visualization and Science
Statistical Rank Aggregation: Inference, Evaluation, and
Visualization
Work with Open Road Traffic Casualty Data from Great Britain
An Interface for the 'STAT Search Analytics' 'API'
Tidy Dataframes and Expressions with Statistical Details
Shiny Apps for Automated Data Analysis and Automated
Interpretation
Companion Software for the Coursera Statistics with R
Specialization
Calculate the Standardized Difference for Numeric, Binary and
Category Variables
ICA and Tests of Independence via Multivariate Distance
Covariance
Testing Steepness of Dominance Hierarchies
Steiner Tree Approach for Graph Analysis
Semi-Parametric Stein-Like Estimator with Instrumental Variables
Stemmatological Analysis of Textual Traditions
Spatio-Temporal Estimation and Prediction for Censored/Missing
Responses
Stepwise Variable Selection for Generalized Boosted Regression
Modeling
Variable Selection for Joint Modeling of Mean and Dispersion
Subpopulation Treatment Effect Pattern Plot (STEPP)
Power Calculation for Stepped Wedge Designs
Stepwise Forward Variable Selection in Penalized Regression
L2 Penalized Logistic Regression with Stepwise Variable
Selection
Stepwise Predictive Variable Selection for Random Forest
Spatially- and Temporally-Explicit Population Simulator
Step-Wise Signal Extraction via Marginal Likelihood
Multiple Testing Method to Control Generalized Family-Wise Error
Rate and False Discovery Proportion
Stereo Camera Calibration and Reconstruction
Steve's Toy Data for Teaching About a Variety of Methodological,
Social, and Political Topics
Statistical Tests for Functional Time Series
Calculation of the Standardized Temperature Index
Persist Attributes Across Data Operations
Separable Gaussian Process Interpolation (Emulation)
Simultaneous Threshold Interaction Modeling Algorithm
Stineman, a Consistently Well Behaved Method of Interpolation
STL Decomposition and ARIMA Hybrid Forecasting Model
Tidy Manipulation of CSB Data for St. Louis
Hybrid Forecasting Model Based on STL Decomposition and ELM
Spatio-Temporal Analysis of Point Patterns on Linear Networks
Enhanced Seasonal Decomposition of Time Series by Loess
STL Decomposition and TDNN Hybrid Time Series Forecasting
Estimation of the Structural Topic Model
A Tool for Structural Topic Model Visualizations
Rapid and Accurate Genetic Prediction Modeling for Genome-Wide
Association or Whole-Genome Sequencing Study Data
Shiny Application for Creating STM Models
A 'Shiny' Application for Inspecting Structural Topic Models
Quantile-Quantile Plot with Several Gaussian Simulations
Discovery of Motifs in Spatial-Time Series
Fit a Spatial Occupancy Model via Gibbs Sampling
Stochastic Profiling using Maximum Likelihood Estimation
Stochastic Limited Memory Quasi-Newton Optimizers
Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Likelihood Estimation of Stochastic Volatility Models
Analyze Chess Games with the 'Stockfish' Engine
R Functions for Solving Stoichiometric Equations
Selection Threshold Optimized Empirically via Splitting
Write Storm Bolts in R using the Storm Multi-Language Protocol
Download, Explore, and Analyze Literary Theme Ontology Data
Explore Twitter Trends with the 'Storywrangler' API
Stochastic Simulator for Reliability Modeling of Repairable
Systems
Selection of Training Populations by Genetic Algorithm
Stochastic Process Model for Analysis of Longitudinal and
Time-to-Event Outcomes
Space-Time Point Pattern Simulation, Visualisation and Analysis
Convert R Objects from One Structure to Another
A Framework for Investment Strategy Simulation
Stratigraphic Tree Analysis for Palaeontology
An Implementation of the Stratification Index
Optimum Sample Allocation in Stratified Random Sampling Scheme
Stratification and Matching for Large Observational Data Sets
Optimal Stratification in Stratified Sampling
Generic Framework to Analyze Trading Strategies
Univariate Stratification of Survey Populations
Builds Trees by Sampling Variables in Groups
Different Methods for Stratified Sampling
Optimal Stratification of Univariate Populations
Enumeration and Uniform Sampling of Transmission Trees for a
Known Phylogeny
Fast Implementation of Reading/Dump for .hic Files
Anomaly Detection in High Dimensional and Temporal Data
Parametric Ordinary Differential Equations Model of Growth,
Death, and Respiration of Macroinvertebrate and Algae Taxa
Estimate Streamflow Depletion Due to Groundwater Pumping
Calculate Single Station Metabolism from Diurnal Oxygen Curves
Interface for MOA Stream Clustering Algorithms
Fetch and plot financial stress index and component data
Computation and Estimation of Reliability of Stress-Strength
Models
Creates an Adjacency Matrix from a List of Strings
Approximate String Matching, Fuzzy Text Search, and String
Distance Functions
Simple, Consistent Wrappers for Common String Operations
Drop-in Replacements for Base String Functions Powered by
'stringi'
Structured Trellis Displays Without Strips for Lattice Graphics
Analysis of Short Tandem Repeat (STR) Massively Parallel
Sequencing (MPS) Data
R Codes and Datasets for Generalized Linear Mixed Models: Modern
Concepts, Methods and Applications by Walter W. Stroup
Testing, Monitoring, and Dating Structural Changes
Testing, Monitoring, and Dating Structural Changes: C++ Version
False Discovery Control Procedure Integrating the Prior
Structure Information
Process Control and Internal Validation of Forensic STR Kits
Subtests Using Algorithmic Rummaging Techniques
Tidy Handling and Navigation of the Student-Life Dataset
Study Strap and Multi-Study Learning Algorithms
Student's t Vector Autoregression (StVAR)
Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures
Detect Subgroup with an Enhanced Treatment Effect
Methods for exploring treatment effect heterogeneity in subgroup
analysis of clinical trials
Graphical Displays for Subgroup Analysis in Clinical Trials
Combine Multiple GWAS by Using Gene-Environment Interactions
Automatic Lesion Incidence Estimation and Detection using
Multi-Modality Longitudinal Magnetic Resonance Images
Effect Modification in Observational Studies Using the Submax
Method
Within Outlying Mean Indexes: Refining the OMI Analysis
Identify Metabolic Subpathways Mediated by MicroRNAs
Identify Signal Subpathways Competitively Regulated by LncRNAs
Based on ceRNA Theory
Unconstrained Optimization using the Subplex Algorithm
Computes Copula using Ranks and Subsampling
Subsample Winner Algorithm for Variable Selection in Linear
Regression with a Large Number of Variables
Computing Subscores in Classical Test Theory and Item Response
Theory
Systematic Screening of Study Data for Subgroup Effects
Subgroup Specific Optimal Dose Assignment
Cluster analysis to find molecular subtypes and their assessment
Prioritization of Candidate Cancer Subtype Specific Drugs
Visual Exploration of Protein Alignments Resulting from Multiple
Substitution Matrices
Identify Sudden Gains in Longitudinal Data
Tools for Making and Spoiling Sudoku Games
Suess and Laws Corrections for Marine Stable Carbon Isotope Data
Supporting Graphs for Analysing Time Series
Fast Region-Based Association Tests on Summary Statistics
Easy Calculation and Visualisation of Confidence Intervals
Building Polygenic Risk Score Using GWAS Summary Statistics
Tools to Quickly and Neatly Summarize Data
Small-Area-Estimation Unit/Area Models and Methods for
Estimation in R
Permutation True Discovery Guarantee by Sum-Based Tests
Compute Sun Position, Sunlight Phases, Moon Position and Lunar
Phase
Quantification of the effect of geographic versus environmental
isolation on genetic differentiation
An Interface to 'SUNDIALS' Ordinary Differential Equation (ODE)
Solvers
Sub-National Geospatial Data Archive: Geoprocessing Toolkit
Constructing Suns-Voc from Outdoor Time-Series I-V Curves
The Self-Updating Process Clustering Algorithms
Supervised Clustering of Predictor Variables Such as Genes
Generating Robust Biclusters from a Bicluster Set (Ensemble
Biclustering)
A Comprehensive Test Suite for Testing Markov Chain
Nonconvergence
Exact Test and Visualization of Multi-Set Intersections
Superfast Likelihood Inference for Stationary Gaussian Time
Series
A Graphical Tool for Exploring Complex Datasets Using Heatmaps
Implements the supervised multidimensional scaling (superMDS)
proposal of Witten and Tibshirani (2011)
Build Machine Learning Models Like Using Python's Scikit-Learn
Library in R
Judd, McClelland, & Ryan Formatting for ANOVA Output
Simulation-Based Power Analysis for Factorial Designs
Supervised Classification Learning and Prediction using Patient
Rule Induction Method (PRIM)
Detecting Structural Change with Heteroskedasticity
Downloading Supplementary Data from Published Manuscripts
Basic Functions for Supporting an Implementation of Choice
Experiments
Calculates Likelihood Support Intervals for Common Data Types
Modeling Tool for 'Shiny' Applications Developed with Modules
Companion to "Statistics Using R: An Integrative Approach"
Bayesian Analysis of Seemingly Unrelated Regression Models
Surrogate Residuals for Ordinal and General Regression Models
A Novel Multi-Disease Automated Phenotyping Method for the EHR
Fitting Hansen Models to Investigate Convergent Evolution
Find Optimal Sampling Locations Based on Spatial Covariate(s)
Evaluation of Surrogate Endpoints in Clinical Trials
Estimation of the Proportion of Treatment Effect Explained by
Surrogate Outcome Information
Early Testing for a Treatment Effect using Surrogate Marker
Information
Evaluation of Failure Time Surrogate Endpoints in Individual
Patient Data Meta-Analyses
LaTeX descriptive statistic reporting for survey data
Inference for Model-Free Between-Group Parameters for Censored
Survival Data
Estimators of prediction accuracy for time-to-event data
Two-Sample Tests Based on Differences of Kaplan-Meier Curves
Concordance Based Bootstrap Methods for Outlier Detection in
Survival Analysis
C-Statistics for Risk Prediction Models with Censored Survival
Data
Plots Survival Curves Element by Element
Discrete Time Survival and Longitudinal Data Analysis
Time Series Models for Disease Surveillance
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic
Phenomena
Comparing Multiple Survival Functions with Crossing Hazards
Tools for the Bootstrap with Survey Data
Generate a Survey that can be Completed by Survey Respondents
Survey Standard Error Estimation for Cumulated Estimates and
their Differences in Complex Panel Designs
The Gini concentration test for survival data
Group Sequential Design for a Clinical Trial with Censored
Survival Data
Survival Analysis in Health Economic Evaluation
IDI and NRI for comparing competing risk prediction models with
censored survival data
Inference and Prediction in an Illness-Death Model
High Dimensional Survival Data Analysis with Markov Chain Monte
Carlo
Fit High-Dimensional Proportional Hazards Models
Eliminate the Influence of Co-Expression Genes on Target Genes
High-Level Interface for Survival Analysis and Associated Plots
Penalised Maximum Likelihood for Survival Analysis Models
Penalised Likelihood for Survival Analysis with Dependent
Censoring
Time-dependent ROC curve estimation from censored survival data
Data from all Seasons of Survivor (US) TV Series in Tidy Format
Survival Prediction by Joint Analysis of Microarray Gene
Expression Data
Analysis of Proportional Hazards Model with Sparse Longitudinal
Covariates
Predictive Evaluation Metrics in Survival Analysis
Multiple Imputation Method in Survival Analysis
Miscellaneous Functions for Survival Data
Design of Clinical Trials with Survival Endpoints Based on
Binary Responses
Parametric Survival Simulation with Parameter Uncertainty
Multidimensional Penalized Splines for Survival and Net Survival
Models
Presmoothed Estimation in Survival Analysis
Weibull Regression for a Right-Censored Endpoint with
Interval-Censored Covariate
Flexible and Coherent Test/Estimation Procedure Based on
Restricted Mean Survival Times
Permutation Test for Comparing Restricted Mean Survival Time
Sensitivity Analysis with Time-to-Event Outcomes
Simulation of Simple and Complex Survival Data
Power Calculations for SNP Studies with Censored Outcomes
Nonparametric Spearman's Correlation for Survival Data
Compute Targeted Minimum Loss-Based Estimates in Right-Censored
Survival Settings
Visualization of the Local and Global Survival Model
Explanations
Forecasting Data using Alpha-Sutte Indicator
Measures of the Sturdiness of Regression Coefficients
Data-Driven Identification of SVAR Models
Interfaces to Various State-of-Art SVD and Eigensolvers
SciViews - Standard Dialog Boxes for Windows, MacOS and Linuxes
SciViews GUI API - Dialog boxes using Tcl/Tk
R 'Htmlwidget' to Add Pan and Zoom to Almost any R Graphic
Manipulate SVG (Template) Files of Charts
3D Animated Interactive Visualizations Using SVG and WebGL
Functions to Ease Interactions Between R and IDE or Code Editors
SciViews GUI API - Functions to interface with Komodo Edit/IDE
Causal Effect Estimation and Diagnostics with Support Vector
Machines
Implementation of Support Vector Machines Plus (SVM+)
Wrappers for Tools in Other Packages for IDE Friendliness
'SciViews' - Unit, Integration and System Testing
Management of GUI Widgets, Windows, and Other GUI Resources
Linear Regression Model Diagnostics for Survey Data
Nomograms for Right-Censored Outcomes from Survey Designs
Design-Based Inference in Vector Generalised Linear Models
Subsampling Winner Algorithm for Classification
Dynamically Generates Documentation from a 'Swagger' Compliant
API
Visualization, Analysis and Adjustment of High-Dimensional Data
in Respect to Sample Annotations
Ensemble Learning Algorithms Based on Support Vector Machines
Read, Inspect, and Manipulate Color Swatch Files
Stepped Wedge Cluster Randomized Trial (SW CRT) Design
Sliding Window Discrete Fourier Transform (SWDFT)
Power Calculation for Stepped Wedge Cluster Randomized Trials
Speedy Word Embedding Association Test and Extras Using R
Southwest Fisheries Science Center Aerial DAS Data Processing
Southwest Fisheries Science Center Shipboard DAS Data Processing
Miscellaneous Functions for Southwest Fisheries Science Center
Simulation Extrapolation Inverse Probability Weighted
Generalized Estimating Equations
Scenario Weights for Importance Measurement
Data Import, Cleaning, and Conversions for Swimming Results
Tools for Creating Swimmers Plots using 'ggplot2'
Air Quality Data of Switzerland for One Year in 30 Min
Resolution
Get Swiss Federal and Cantonal Vote Results from Opendata.swiss
Multilevel Regression with Post-Stratification (MrP) for
Switzerland
Interface to the Webservices of the Swiss Parliament
An Agile Widget Engine for Real-Time, Dynamic Visualizations
A Simple and Flexible Switch-Case Construct for the 'R' Language
Switching nonparametric regression models for a single curve and
functional data
Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Functions for Analyzing and Plotting Estuary Monitoring Data
Helper Tools for Australian Hydrologists
Cost Constrained Flux Balance Analysis (ccFBA): MetabOlic
Modeling with ENzyme kineTics (MOMENT)
Cycle-Free Flux Balance Analysis (CycleFreeFlux)
Dynamic FBA : Dynamic Flux Balance Analysis
Syllable Counting and Readability Measurements
Syllabifier for CMU Dictionary Transcriptions
Hyphenation and Syllable Counting for Text Analysis
Language Support for 'sylly' Package: English
Autoregressive and Moving Average Symmetric Models
Symbolic Representation of Matrix Determinant
Testing for Symmetry of Data and Model Residuals
Symbolic Central and Noncentral Moments of the Multivariate
Normal Distribution
Efficient and Precise Single-Cell Reference Atlas Mapping
Symbolic Computation for Structural Equation Models
Methods for Computing Spatial, Temporal, and Spatiotemporal
Statistics
Subsample Temporal Data to Synchronal Events and Compute the MCI
A Synchronized Tausworthe RNG for R and Python
Analysis of Functional and Phylogenetic Patterns in
Metacommunities
Inference and Analysis of Sympatry Networks
Synthesize Dense or Sparse Functional Data/Snippets
Synthetic Likelihood Methods for Intractable Likelihoods
Synoptic Climate Classification and Spatial Regionalization of
Environmental Data
Explore and Process Synesthesia Consistency Test Data
Synthetic RNA-Seq Network Generation and Mutual Information
Estimates
An 'SPSS' Syntax Generator for Multi-Variable Manipulation
Synthetic Control Group Method for Comparative Case Studies
Synthetic Microdata and Spatial MicroSimulation Modeling for ACS
Data
Synthetic Control Method to Forecast Series
Generate Synthetic Data from Statistical Models
Import, Assemble, and Deduplicate Bibliographic Datasets
Synthetic Experience Tracking Insurance Claims
Generating Synthetic Versions of Sensitive Microdata for
Statistical Disclosure Control
Tools and Tests for Experiments with Partially Synthetic Data
Sets
Powerful and Reliable Tools for Running System Commands in R
Systematic Scenario Selection for Stress Testing
Send Log Messages to Remote 'syslog' Server
Estimating Systems of Simultaneous Equations
Extracts Sentiment and Sentiment-Derived Plot Arcs from Text
Functions for Applying the T^2-Test for Equivalence
Tools for Computational Optimal Transport
Create Summary Tables for Statistical Reports
Write Formatted Tables in Excel Workbooks
Build 'data.table' Expressions with Data Manipulation Verbs
Make and Apply Customized Rounding Specifications for Tables
Tables of Descriptive Statistics in HTML
Exports Reproducible Summary Tables to Multi-Tab Spreadsheet
Files (.xls or .xlsx)
Higher Criticism Test of Two Frequency Counts Tables
Combines 'data.table' and 'matrix' Classes
Create 'Table 1' to Describe Baseline Characteristics with or
without Propensity Score Weights
Presentation-Quality Tables, Displayed Using 'ggplot2'
Tabulate Descriptive Statistics in Multiple Formats
Automatically Convert Hierarchical for-Human Tables to
Machine-Readable LongForm Dataframes
Fit 'TabNet' Models for Classification and Regression
Music Notation Syntax, Manipulation, Analysis and Transcription
in R
Analysis, Seriation and Visualization of Archaeological Count
Data
Efficient Tabulation with Stata-Like Output
Parsing Semi-Structured Log Files into Tabular Format
Tabu Search Algorithm for Binary Configurations
User-Friendly Tables with Color Helpers for Data Exploration
Positron Emission Tomography Time-Activity Curve Analysis
New and Extended Plots, Methods, and Panel Functions for
'lattice'
Tail Classifier for Thick-Tailed Discrete Data
Minimum Distance Estimation of Tail Dependence Models
Estimate the Probability in the Upper Tail of the Aggregate Loss
Distribution
Tool for Annotating Images in Preparation for Analysis
Analysis of Differential Calorimetry Scans
Design Shaded Contour Lines (or Tanaka) Maps
A Two-Stage Approach to Maximize Interpretability of Drug
Response Models Based on Multiple Molecular Data Types
Anonymization of Spatial Point Patterns and Raster Objects
Flexible Tree Taper Curves Based on Semiparametric Mixed Models
Wrapper for 'tapkee' Dimension Reduction Library
Trait Matching and Abundance for Predicting Bipartite Networks
Bayesian Modeling of Autoregressive Threshold Time Series Models
Dynamic Function-Oriented 'Make'-Like Declarative Workflows
Replicate Tariff Method for Verbal Autopsy
Collection of Utility and Convenience Functions
Analysis and Prediction of Bicycle Rental Amount
Schedule R Scripts and Processes with the Windows Task Scheduler
Earthquake Traveltime Calculations for 1-D Earth Models
Efficient Computation and Testing of the Bergsma-Dassios Sign
Covariance
Get Data Out of 'Tautulli' (Formerly 'PlexPy')
Classes for Storing and Manipulating Taxonomic Data
A High-Performance Local Taxonomic Database Interface
A Lightweight and Lightning-Fast Taxonomic Naming Interface
Taxonomic Information from Around the Web
Tools for Working with 'Taxonomic' Databases
Functions to Work with NCBI Accessions and Taxonomy
Taxonomic Standardization of Plant Species Names
Lyrics and Song Data for Taylor Swift's Discography
Color Palettes Generated by Taylor Swift Albums
Estimation of Causal Effects with Outcomes Truncated by Death
Tree Branches Evaluated Statistically for Tightness
TBF Methodology Extension for Multinomial Outcomes
Convert Tibbles or Data Frames to Xts Easily
Tree-Based Moving Average Forecasting Model
Rearrangement Distances Between Unrooted Phylogenetic Trees
Survival Analysis using a Transform-Both-Sides Model
MLE of a Truncated Normal Distribution with Censored Data
Retrieve Genomic and Clinical Data from TCGA
Client for the Cancer Imaging Archive REST API
Spacekime Analytics, Time Complexity and Inferential Uncertainty
Testing in Conditional Likelihood Context
Data from the 2010 Tourism Forecasting Competition
Concentration-Response Modeling of HTS or Transcriptomics Data
Access to the 'twelvedata' Financial Data API
Statistical Tools for Topological Data Analysis
Analyze High-Dimensional Data Using Discrete Morse Theory
Uniform Manifold Samplers for Topological Data Analysis
Companion Package for the Book "Data Integration, Manipulation
and Visualization of Phylogenetic Trees"
A Boosted Tweedie Compound Poisson Model
Gene Network Inference from Time-Series Transcriptomic Data
Time-Domain Deconvolution of Seismometer Response
Wicked Fast, Accurate Quantiles Using t-Digests
Granier's Sap Flow Sensors (TDP) Analysis
Nonparametric Estimation of Time-Dependent ROC Curve from Right
Censored Survival Data
Insertion/Deletion Dynamics for Transposable Elements
A Collection of Amended Histograms Designed for Teaching
Statistics
Apps for Teaching Statistics, R Programming, and Shiny App
Development
Demonstrations for Teaching and Learning
Selection of Samples and Parameter Estimation in Finite
Population
Fits Neural Networks to Learn About Backpropagation
Solve for Leaf Temperature Using Energy Balance
Multiple Hypothesis Testing on an Aggregation Tree Method
Send Formatted Messages, Images and Objects to Microsoft 'Teams'
An Implementation of the Typicality and Eccentricity Data
Analysis Framework
Model-Based Clustering and Classification with the Multivariate
t Distribution
API Wrapper for Taiwan Economic Journal Data Service
Estimation and Prediction for Remote Effects Spatial Process
Models
Social Representation Theory Application: The Free Evocation of
Words Technique
Temporal Contributions on Trends using Mixed Models
Methods for Temporal Disaggregation and Interpolation of Time
Series
Provides ZENIT-POLAR Substitution Cipher Method of Encryption
Advanced Tensor Arithmetic with Named Indices
Blind Source Separation Methods for Tensor-Valued Observations
Tensor Noise Reduction and Completion Methods
Supervised Tensor Decomposition with Side Information
Multiway Clustering via Tensor Block Models
Factor and Autoregressive Models for Tensor Time Series
Covariance Inference and Decompositions for Tensor Datasets
Test for A+B Traditional Escalation Rule
Fit, Simulate and Diagnose Models for Network Evolution Based on
Exponential-Family Random Graph Models
Fast Simulation of Simple Temporal Exponential Random Graph
Models
Create, Manipulate and Query Parameter Terms
Visualisation, Verification and Calibration of Ternary
Probabilistic Forecasts
Triangulate and Simplify 3D Terrain Meshes
Landscape Visualizations in R and 'Unity'
Diversification Rate Estimation and Fast Simulation of
Reconstructed Phylogenetic Trees under Tree-Wide
Time-Heterogeneous Birth-Death Processes Including
Mass-Extinction Events
Test (Multiple) Arguments of a User-Defined Prediction Algorithm
A Hypothesis Testing Framework for Validating an Assay for
Precision
FWER and FDR Controlling Procedures for Multiple Correlation
Tests
Missing Item Responses Imputation for Test and Assessment Data
Optimal Test Design Approach to Fixed and Adaptive Test
Construction
Analysis Of The Interpopulation Difference In Degree of Sexual
Dimorphism Using Summary Statistics
Teaching Data for Statistics and Data Science
Bootstrap Tests for Equality of 2, 3, or 4 Population Variances
Tests and checks characteristics of R objects
Test Functions for Simulation Experiments and Evaluating
Optimization and Emulation Algorithms
Optimal Analysis of Test and Rating Scale Data
Bootstrap Test for the Similarity of Dose Response Curves
Concerning the Maximum Absolute Deviation
GUI for Entering Test Items and Obtaining Raw and Transformed
Scores
Utils and 'RStudio' Addins to Make Testing Even More Fun
Testing One Hypothesis Twice in Observational Studies
Satisfaction Analysis using Tetraclasse Model and Llosa Matrix
Automatic Sequence Prediction by Expansion of the Distance
Matrix
Personalizes and Randomizes Exams Written in 'LaTeX'
Conversion of R Regression Output to LaTeX or HTML Tables
Analyses of Text using Natural Language Processing and Machine
Learning
R Tools for Text Matrices, Embeddings, and Networks
Detecting UN Sustainable Development Goals in Text
Discovering Latent Treatments in Text Corpora and Estimating
Their Causal Effects
An Easy Text and Sentiment Analysis Library
Regression Analysis and Forecasting Using Textual Data from a
Time-Varying Dictionary
Functions for Text Mining and Topic Modeling
Textual Data Analysis Package used by the TXM Software
Summarize Text by Ranking Sentences and Finding Keywords
n-Gram Text Regression, aka Concise Comparative Summarization
Detect Text Reuse and Document Similarity
Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text
Shaping
Text Processing for Small or Big Data Files
Functions for Text Cleansing and Text Analysis
Fits Piecewise Polynomial with Data-Adaptive Knots in Cox Model
Optimal Thresholding Fisher's P-Value Combination Method
Efficient and Accurate P-Value Computation for Position Weight
Matrices
Globe and Mail Graphics Theme for 'ggplot2'
The Standard Distribution Functions for the Truncated
Generalised Gamma Distribution
Rapid Reconstruction of Time-Varying Gene Regulatory Networks
Amos Tanay's Group High Performance Statistical Utilities
Find Out Who Maintains the Packages you Use
Unified and Automatic 'Theming' of 'ggplot2', 'lattice', and
'base' R Graphics
Exploring Thematic Structure and Predicted Functionality of 16s
rRNA Amplicon Data
Extra Recipes Steps for Dealing with Unbalanced Data
Temperature Measurement with Thermocouples, RTD and IC Sensors
Palettes Inspired by the TV Show "The Witcher"
Threshold Matching for Thick Description for Optimal Matching in
Observational Studies
Get Executing Script's Path, from 'RStudio', 'RGui', 'Rterm' and
'Rscript' (Command-Line / / Terminal), and When Using 'source'
'HTMLwidgets' Displaying Some 'WebGL' Shaders
Design and Analysis of Clinical Non-Inferiority or Superiority
Trials with Active and Placebo Control
Thresholded variable selection and prediction based on
estimating equations
ML Estimator for Baseline-Placebo-Treatment (Three-Group)
Experiments
Interactive 3D Scatter Plots, Networks and Globes
Download Charitable Grants from the '360Giving' Platform
The Japanese Pictorial Maxim "See No Evil, Hear No Evil, Speak
No Evil"
Represent Precise Coordinates in Three Words
Threshold Regression for Interval-Censored Data with a Cure Rate
Option
Threshing and Reaping for Principal Components
Threshold Selection and Uncertainty for Extreme Value Analysis
Three-Stage Least Squares Estimation for Systems of Simultaneous
Equations
Execution Functions for Tick Data Back Test
Functions for Timing R Scripts, as Well as Implementations of
Stack and List Structures
Create dynamic reports using a TiddlyWiki template
Tide Analysis and Prediction of Predominantly Semi-Diurnal Tides
Tidy Data and 'Geoms' for Bayesian Models
Expand Tidy Output for Categorical Parameter Estimates
Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Data Modification and Analysis for Communication Research
Tidy C++ Header-Only Definitions for Parts of the C API of R
Tidy Common Workflow Language Tools and Workflows
Tidy Verbs for Fast Data Operations by Reference
Tidy Verbs for Dealing with Genomic Data Frames
Extract and Tidy Canadian 'Hydrometric' Data
Shared Infrastructure of 'Tidylab' Package Collection
Latent Dirichlet Allocation Using 'tidyverse' Conventions
Logging for 'dplyr' and 'tidyr' Functions
Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source
or Commercial Software
A Pipeline for Microbiome Analysis and Visualization
Easily Install and Load the 'Tidymodels' Packages
Converts 'MultiQC' Reports into Tidy Data Frames
Tidy Model Visualisation for Generalised Additive Models
A Tidy Approach to 'NetCDF' Data Exploration and Extraction
Analysis of the Nigeria National Data Repository (NDR)
Tidy Tools for Paleoenvironmental Archives
Parse Full Text XML Documents from PubMed Central
Bayesian Analysis to Compare Models using Resampling Statistics
A Convenient API for Accessing United States Census Bureau's
Quarterly Workforce Indicator
Helper Functions for Working with REDCap Data
Obtain Rules from Rule Based Models as Tidy Dataframe
Tidy Processing and Analysis of Biological Sequences
Customisable Stop-Words in 110 Languages
String Distance Calculation with Tidy Data Principles
A Tidy Implementation of the Synthetic Control Method
Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
A Collection of Tools and Helpers Extending the Tidyverse
Read, Validate, Analyze, and Map GTFS Feeds
Tidy Methods for Bayesian Treatment Effect Models
A Tidy Tool for Phylogenetic Tree Data Manipulation
Access the Weekly 'TidyTuesday' Project Dataset
A Minimal Tool Set for Gathering USDA Quick Stat Data for
Analysis and Visualization
VPC Percentiles and Prediction Intervals
Explore 'Wikidata' Through Tidy Data Frames
Pre-Process of Time Series Data Set in R
Technical Variation Elimination with Ensemble Learning
Architecture
Infers Novel Immunoglobulin Alleles from Sequencing Data
Universal Storage Engine for Sparse and Dense Multidimensional
Arrays
Create Geographic and Non-Geographic Map Tiles
Variable Selection via Tilted Correlation Screening Algorithm
Rmetrics - Chronological and Calendar Objects
Time Delay Estimation for Stochastic Time Series of
Gravitationally Lensed Quasars
Infer Constant and Stochastic, Time-Dependent Model Parameters
Timeline and Time Duration-Related Tools
Time-Ordered and Time-Aggregated Network Analyses
Flexible Regression Models for Survival Data
Time-Dependent ROC Curve and AUC for Censored Survival Data
Bootstrap computations for time series objects
Detecting Differentially Expressed Genes in Time Course RNA-Seq
Data
Financial Time Series Objects (Rmetrics)
Manage Time Series for Official Statistics with R and PostgreSQL
A Tool Kit for Working with Time Series in R
Seasonal/Sequential (Instants/Durations, Even or not) Time
Series
Interface to the TimeTree of Life Webpage
Create Interactive Timeline Visualizations in R
Survival Analysis of Time Varying Coefficients Using a
Tree-Based Approach
Target Inhibition Interaction using Maximization and
Minimization Averaging
Fitting Separable Nonlinear Models in Spectroscopy and
Microscopy
Time Series Analysis and Control Package
A Universal Non-Uniform Random Number Generator
Expression Data Analysis and Visualization
A Lightweight Template for Data Analysis Projects
Get and Show Personal 'Google Scholar' Profile
Tinyverse R Wrapper for the 'Spotify' Web API
Lightweight and Feature Complete Unit Testing Framework
Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Using Tip Dates with Phylogenetic Trees in BEAST
Data and Tools for Analyzing the Pali Canon
Automated measure-based classification for flint tools
Add Tooltips to 'R markdown' Documents or 'Shiny' Apps
Isotonic Designs for Phase 1 Trials with Late-Onset Toxicities
Acid/Base, Complexation, Redox, and Precipitation Titration
Curves
Proportional Odds Model with Censored, Time-Lagged Categorical
Outcome
T Loux Doing R: Functions to Simplify Data Analysis and
Reporting
Effects under Linear, Logistic and Poisson Regression Models
with Transformed Variables
Linear Student-t Mixed-Effects Models with Censored Data
Calculate TL-Moments and Convert Them to Distribution Parameters
Low-Rank Methods for MVN and MVT Probabilities
Tools of Total Least Squares in Error-in-Variables Models
Transitive Locality-Sensitive Hashing (LSH) for Record Linkage
Import texts from files in the Alceste format using the tm text
mining framework
Import Articles from 'Europresse' Using the 'tm' Text Mining
Framework
Import Articles from 'Factiva' Using the 'tm' Text Mining
Framework
Full Corpus Support for the 'koRpus' Package
Import Articles from 'LexisNexis' Using the 'tm' Text Mining
Framework
Retrieve Structured, Textual Data from Various Web Sources
The Integration Between 'IBM COGNOS TM1' and R
Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
MCMC Sampling from 'TMB' Model Object using 'Stan'
Melting Temperature of Nucleic Acid Sequences
Targeted Learning of a NP Importance of a Continuous Exposure
Feature Set Enrichment Analysis for Metabolomics and
Transcriptomics
Estimation of the Rasch Model for Multistage Tests
'Too Many, Too Improbable' (TMTI) Test Procedures
Sampling from Truncated Multivariate Normal and t Distributions
Truncated Multivariate Normal and Student t Distribution
Temporal Network Centrality (TNC) Measures
Weighted, Two-Mode, and Longitudinal Networks Analysis
Total Operating Characteristic Curve and ROC Curve
Create Full Text Browsers from Annotated Token Lists
Fast, Consistent Tokenization of Natural Language Text
Statistical Tolerance Intervals and Regions
Official R Library for Tomba Email Finder
Make Data Based on Different Geographies Comparable
Multivariate Tools for Compositional Data Analysis
Cardinal to Ordinal Number & Date Conversion
An Efficient and Deterministic Method for Identifying
Topological Domains in Genomes
Topic-Specific Diagnostics for LDA and CTM Topic Models
The Topic SCORE Algorithm to Fit Topic Models
Inference, Aggregation and Visualization for Top-K Ranked Lists
Implementation of the Hydrological Model TOPMODEL in R
Calculating Topographic Paths and Distances
Gene Set Analysis Exploiting Pathway Topology
TOPSIS method for multiple-criteria decision making (MCDM)
Import Multiple Files From a Single Directory at Once
Tensors and Neural Networks with 'GPU' Acceleration
Models, Datasets and Transformations for Images
Instrumental Variables Two Stage Least Squares estimation
Create the Tree of Science from WoS and Scopus
Two One-Sided Tests (TOST) Equivalence Testing
Extract Decennial Census and American Community Survey Data
Quantify the Balance of Phylogenetic Trees
Tools of Utilization and Cost in Healthcare
Tour Methods for Multivariate Data Visualisation
Calculates Safety Stopping Boundaries for a Single-Arm Trial
using Bayes
Exploring Biological Relevance of Environmental Chemistry
Observations
Experimental design for binary toxicity tests
Estimation of Transition Probabilities for the Illness-Death
Model
Estimation and Inference of Two-Way pAUC, pAUC and pODC
Methods for Measuring Functional Diversity Based on Trait
Probability Density
A Novel Topology-Based Pathway Enrichment Analysis Approach
Counts the Number of True Positives and False Positives
Thresholded Partial Least Squares Model for Neuroimaging Data
Estimation of Transition Probabilities in Multistate Models
Truncated Positive Normal Model and Extensions
A Tool for Downloading Functional Traits Data for Plant Species
Nonparametric Trace Regression via Sign Series Representation
Identifying Important Areas from Animal Tracking Data
Collaborative Editing of Rmd (or Rnw) Documents in Google Drive
Infrastructure for Running, Cycling and Swimming Data from
GPS-Enabled Tracking Devices
Interface for the Analysis of Running, Cycling and Swimming Data
from GPS-Enabled Tracking Devices
Semantic Annotation and Discoverability System for R-Based
Artifacts
Reconstruct Animal Tracks from Magnetometer, Accelerometer,
Depth and Optional Speed Data
Automated Kinematic Analysis of Image Data
Read, Manipulate and Visualise Magnetic Resonance Images
Replication of 'An Advanced Guide To Trade Policy Analysis'
Tree Ring Analysis of Disturbance Events in R
CCR, Entropy-Based Correlation Estimates & Dynamic Beta
Estimation, Comparison and Selection of Transformations
An Interface to the National Rail Enquiries Systems
Formatting and Harmonizing Ecological Trait-Data
Statistical Data Analysis for Randomized Block Design
Experiments
Trajectory Miner: a Toolbox for Exploring and Rendering
Sequences
Transformation Models with Mixed Effects
Make Functions that Can Recurse Infinitely
'TRFLP' Analysis and Matching Package for R
Automated Transcription of Audio Files Through the HP IDOL API
Transform MOS Values to be Robust for using Rank Based
Statistics
Transfer of Hydrograph from Gauged to Ungauged Catchments
Bindings for the Google and Microsoft Translation APIs
R Manuals Literally Translated in Korean
Fit Linear Transformation Models for Right Censored Data
Implementation of Transportation Problem Algorithms
Inference of Transmission Tree from a Dated Phylogeny
Audit and Research Functions for Transplantation
Computation of Optimal Transport Plans and Wasserstein Distances
Transformation Model Based Estimation of Survival and Regression
Under Dependent Truncation and Independent Censoring
Pacote Para Analise De Experimentos Com Testemunhas Adicionais
Estimation and Simulation of Trawl Processes
Generate Treasury Total Returns from Yield Data
Random Forest Prediction Decomposition and Feature Importance
Measure
Discovery, Access and Manipulation of 'TreeBASE' Phylogenies
Hierarchical Multinomial Processing Tree Modeling
Numerical Calibration of Proxy-Climate Relationships
Centre of Mass Assessment and Consolidation of Trees
Manipulation of Matched Phylogenies and Data using 'data.table'
Fast Molecular Clock Dating of Phylogenetic Trees with Rate
Variation
Air Pollution Removal by Dry Deposition on Trees
Calculate and Map Distances Between Phylogenetic Trees
An Adaptive Multi-Scale Basis for High-Dimensional, Sparse and
Unordered Data
Phylogenetic Tree Manipulation Class and Methods
Comparison of Trees using a Tree Defining Polynomial
Estimating birth and death rates based on phylogenies
Exact and Asymptotic K Sample Permutation Test
'dplyr' Functionality for Matched Tree and Data Objects
Phylogenetic Tree Search Using Custom Optimality Criteria
Simulating Phylogenetic Trees under General Bellman Harris and
Lineage Shift Model
Statistical Exploration of Landscapes of Phylogenetic Trees
Generate Starting Trees for Combined Molecular, Morphological
and Stratigraphic Data
Detect Population Structure Within Phylogenetic Trees
Create, Modify and Analyse Phylogenetic Trees
A Shiny-Based Application for Extracting Forest Information from
LiDAR Data
Easily Send Rewards and Incentives with 'Tremendous' from R
Non-Parametric Trend Tests and Change-Point Detection
Innovative Trend Analysis and Time-Series Change Point Analysis
Odds Ratio Estimation and Power Calculation for the Trend in
Trend Model
Estimating Trend, Velocity and Acceleration from Sea Level
Records
Two Sample Order Free Trend Nonparametric Inference
Tensor Regression with Envelope Structure
R Functions for Chapter 3,4,6,7,9,10,11,12,14,15 of Sample Size
Calculation in Clinical Research
Provides the Standard Distribution Functions for the Triangle
Distribution
A Flexible Color Scale for Ternary Compositions
Bayesian Statistics for 2D/3D Transformations
Data Set of Trig Points in Great Britain in British National
Grid Coordinates
Propensity Score Matching of Non-Binary Treatments
Information on all of the TriMet Stops in the Portland Metro
Area
An Implementation of Common Response Time Trimming Methods
Trimmed opinion pools of trees in a random forest
Statistical Tests for Assessing Trinormal ROC Data
A data smoothing approach to explore and test gene-environment
interaction in case-parent trio data
Trio Model with a Combination of Lasso and Group Lasso
Regularization
Tools for the Analysis of Animal Track Data
Triangulation of Irregularly Spaced Data
Metropolis Sampler and Supporting Functions for Estimating
Animal Movement from Archival Tags and Satellite Fixes
Social Relation Model (SRM) Analyses for Single or Multiple
Groups
Explaining Correlated Features in Machine Learning Models
Identification of 2n and 3n Samples from Amplicon Sequencing
Data
Tools for Analyzing Cross-National Military Deployment and
Basing Data
Bayesian Trophic Position Calculation with Stable Isotopes
Pseudo-Vectors Containing All Permutations, Combinations and
Subsets of Objects Taken from a Vector
Generation of Treatment Combination (in Standard Order) in 2^n
Factorial Experiment
Bayesian Methods to Estimate the Proportion of Liars in Coin
Flip Experiments
Implementation the TrueSkill algorithm in R
Skill Estimation Based on a Single Bayesian Network
Two-Sample Nonparametric Testing Under Heterogeneity
Truncated Multivariate Normal and Student Distributions
GoF tests allowing for left truncated data
Semi-parametric estimators of truncated regression models
Create Trusted Timestamps of Datasets and Files
Trust Region Optimization for Nonlinear Functions with Sparse
Hessians
Advanced 'tryCatch()' and 'try()' Functions
Stationary Gaussian ARMA Processes and Other Time-Series
Utilities
Blind Source Separation and Supervised Dimension Reduction for
Time Series
Likelihood-ratio Tests for Two-Sample Comparisons
Terribly-Simple Data Base for Time Series
Two-/Three-Stage Designs for Phase 1&2 Clinical Trials
Training Set Determination for Genomic Selection
Nonlinear Time Series Models with Regime Switching
Total Survey Error (Independent Samples)
Dynamic Ensembles for Time Series Forecasting
Fetching Tweet Data for Sentiment Analysis
Time Series Analysis and Computational Finance
Entropy Based Analysis and Tests for Time Series
Multiscale Multifractal Analysis of Time Series Data
Total Survey Error Under Multiple, Different Weighting Schemes
Two Stage Forecasting (TSF) for Long Memory Time Series in
Presence of Structural Break
Time Series Forecasting Using Nearest Neighbors
Time Series Forecasting using Nonlinear Growth Models
Trait Specific Gene Selection using SVM and GA
Two Stage-Grouped Sure Independence Screening
Interactive Graphics for Tsibble Objects
Fast Two Stage Multiple Change Point Detection
Mining Univariate and Multivariate Motifs in Time-Series Data
'TSdbi' Extensions to Wrap Miscellaneous Data Sources
Truncated Scale Mixtures of Normal Distributions
Time Series Modeling for Air Pollution and Health
Truncated Scale Mixtures of Skew-Normal Distributions
Tools for Temporal Social Network Analysis
T-Distributed Stochastic Neighbor Embedding for R (t-SNE)
Transposable Sphering for Large-Scale Inference with Correlated
Data
Improved Prediction Intervals for ARIMA Processes and Structural
Time Series
Instance Feature Calculation and Evolutionary Instance
Generation for the Traveling Salesman Problem
Functions for Benchmarking Time Series Prediction
Applications of the Qn Estimator to Time Series (Univariate and
Multivariate)
Two Stage Residual Inclusion Additive Hazards Estimator
Robust Preprocessing of Time Series Data
Time Series Segmentation of Residual Trends
'TSdbi' Extension to Connect with 'SDMX'
Simulation of Daily and Monthly Time Series
Trend Estimation of Univariate and Bivariate Time Series with
Controlled Smoothness
Generic SQL Helper Functions for 'TSdbi' SQL Plugins
Time Series Analysis with State Space Model
Functions for Time Series Analysis and Forecasting
Ternary Search Tree for Auto-Completion and Spell Checking
Fitting and Predict Time Series Interactive Laboratory
Time Series Exploration, Modelling and Forecasting
Tree-Structured Modelling of Varying Coefficients
Easy and Interactive Time Series Visualization
Timescale-Specific Variance Ratio for Use in Community Ecology
Bayesian Modelling of Extremal Dependence in Time Series
Temporal Trend Analysis Graphical Interface
Barycenter Methods for Spatial Point Patterns
Three-Term Conjugate Gradient for Unconstrained Optimization
Sampling and Calculating the First and Second Moments for the
Doubly Truncated Multivariate t Distribution
Likelihood Ratio Statistics for One or Two Sample T-Tests
Master Curve Estimates Corresponding to Time-Temperature
Superposition
Genome-Wide DNA Methylation Sites Screening by Use of Training
and Testing Samples
A Service for Tidy Transcriptomics Software Suite
R Client for the YouTube Analytics and Reporting API
Tufte-style html document format for rmarkdown
Tukeys Trend Test via Multiple Marginal Models
A Toolbox for Linear Discriminant Analysis with Penalties
Multi-Objective Parameter Tuning for Classifiers
Tune Random Forest of the 'ranger' Package
Find every match, or orphan, duplicate, triplicate, or other
replicated values
A Suite of Convergence Acceleration Schemes for EM, MM and Other
Fixed-Point Algorithms
Turn vectors and lists of vectors into indexed structures
Convert R Markdown Files to DataCamp Light HTML Files
Lumped/Semi-Distributed Hydrological Model for Education
Purposes
The Time-Varying (Right-Truncated) Geometric Distribution
Multivariate Tests for the Vector of Means
Time-Varying Coefficient for Single and Multi-Equation
Regressions
TV Show Themes and Color Palettes for 'ggplot2' Graphics
Toolkit for Weighting and Analysis of Nonequivalent Groups
Toolkit for Weighting and Analysis of Nonequivalent Groups -
Continuous Exposures
Twang Causal Mediation Modeling via Weighting
Gradient Boosting for Linkage Failure in FSRDCs
Evaluation of Tweedie Exponential Family Models
Interactive manipulation of R expressions
Twitter Topic Modeling and Visualization for R
Render a Twitter Status in R Markdown Pages
Two-Way Latent Structure Clustering Model
Simulate Survival Data for Randomized Clinical Trials
Nonparametric test of equality between two copulas
Process Data from Wearable Research Devices Using Two-Regression
Algorithms
A Two-Sample Test for the Equality of Distributions for
High-Dimensional Data
DE Analysis for Single-Cell RNA-Sequencing Data
Conditional Logistic Regression: A Two-Step Estimation Method
Estimation of the Weights Attached to the Two-Way Fixed Effects
Regressions
Two-Way Tests in Independent Groups Designs
A Small Message Queue for Parallel Processes
Support Types for Variables, Arguments, and Return Values
Auto-Check Types, Dimensions, and Values of Function Arguments
Functions to Simulate and Conduct Dose-Escalation Phase I
Studies
PKPD, PBPK, and Systems Pharmacology Modeling Tools
An Implementation of Re-Sampling Approaches to Utility-Based
Learning for Both Classification and Regression Tasks
Bayesian Models for Data from Unmarked Animals using 'Stan'
UC Berkeley graduate division thesis template
The Universal Character Encoding Detector
Clustering and Classification Inference with U-Statistics
Fixes Column Names for Uniform Crime Report "Offenses Known and
Clearance by Arrest" Datasets
Download and Explore Datasets from UCSC Xena Data Hubs
Tokenization, Parts of Speech Tagging, Lemmatization and
Dependency Parsing with the 'UDPipe' 'NLP' Toolkit
Estimate Univariate Gaussian or Student's t Mixture
Autoregressive Model
Quantile Regression Modeling for Unit-Gompertz Responses
Construct an Unsupervised Hidden Markov Model
Uncertainty Intervals and Sensitivity Analysis for Missing Data
'R' 'Markdown' Themes for 'UIUC' Documents and Presentations
UK Biobank COVID-19 Data Processing and Risk Factor Association
Tests
The UK National Electricity Transmission System Dataset
Generate Universally Unique Lexicographically Sortable
Identifiers
Bayesian Analysis of Location-Scale Mixture Models using a
Weakly Informative Prior
Uniform Manifold Approximation and Projection
Visualization of Structures in High-Dimensional Data
Tools for Analyzing Sequencing Data with Unique Molecular
Identifiers
Simulating Realistic Gene Expression and Clinical Data
Structural Equation Modeling and Twin Modeling in R
Function estimation via Unbalanced Haar wavelets
Uncertainty Estimation and Contribution Analysis
Unification of Clustering Results from Multiple Datasets using
External Specifications
UNC Men's Basketball Match Results Since 1949-1950 Season
Uncorrelated Bets via Minimum Torsion Algorithm
Calculator of Understandability Metrics for BPMN
Tools for Creating Universal Numeric Fingerprints for Data
Extract Matched Substrings Using a Pattern
Penalized Composite Link Model for Efficient Estimation of
Smooth Distributions from Coarsely Binned Data
Handle Data with Messy Header Rows and Broken Values
A Survival Tree Based on Stabilized Score Tests for
High-dimensional Covariates
Uniform Sampling of Directed Acyclic Graphs
Dose-Finding Methods for Non-Binary Outcomes
Unimodal and Isotonic L1, L2 and Linf Regression
Graphical Elements of the University of Konstanz's Corporate
Design
Retrieving Information of Proteins from Uniprot
Abbreviate Strings to Short, Unique Identifiers
Unimodal Penalized Spline Regression using B-Splines
Check if Roots of a Polynomial Lie Outside the Unit Circle
Assessment and Evaluation of Formations in United
Assessing Essential Unidimensionality Using External Validity
Information
Maximum Likelihood Estimation for Univariate Densities
Non-Parametric Cluster Significance Testing with Reference to a
Unimodal Null Distribution
Unpivot Complex and Irregular Data Layouts
Analysis and Graphics for Unreplicated Experiments
Extract Text from Rich Text Format (RTF) Documents
Stationarity Test Based on Unsystematic Sub-Sampling
United Nations General Assembly Voting Data
Efficient Bayesian Models for Binary and Categorical Data
Uplift Model Evaluation with Plots and Metrics
Unsupervised Photometric Membership Assignment in Stellar
Clusters
'HTMLWidget' Wrapper of 'UpSet.js' for Exploring Large Set
Intersections
A More Scalable Alternative to Venn and Euler Diagrams for
Visualizing Intersecting Sets
Utilities Powering the Globe and Mail's Data Journalism Template
Approximate the Variance of the Horvitz-Thompson Total Estimator
Get Data Frame Representations of 'Elasticsearch' Results
Unifying Estimation Results with Binary Dependent Variables
Unit Root and Cointegration Tests for Time Series Data
Run CRAN URL Checks from Older R Versions
R Wrapper for the 'Bit.ly' and 'Is.gd'/'v.gd' URL Shortening
Services
Vectorised Tools for URL Handling and Parsing
Unit Root Tests for Seasonal Time Series
Non-Interactive Spatial Tools for Raster Processing and
Visualization
US 2010 Census SF2 Geographic Header Summary Levels 010-050
Historical and Contemporary Boundaries of the United States of
America
Create US cancer datasets from SEER, IARC, and US Census data
US Census 2000 Designated Places Shapefiles and Additional
Demographic Data
US Census 2000 Tract Level Shapefiles and Additional Demographic
Data
Request USDA MPR Historical Data via the 'LMR' API
Data on the States and Counties of the United States
Uncertainty Analysis for Species Distribution Models
A Collection of Useful Functions by John
Boilerplate Code for 'Tidymodels' Analyses
Automate Analytic Project Setup and Development
County-Level Estimates of Fertilizer Application in USA
The Demand and Supply for Electricity in the US
Data Sets, Etc. for the Text "Using R for Introductory
Statistics", Second Edition
Model-Based Clustering via Mixtures of Unrestricted Skew-t
Sactor Analyzer Models
Analyze System Scalability with the Universal Scalability Law
U-Statistic Permutation Tests of Independence for all Data Types
United States Centers of Population (Centroids)
A Companion Package to the Book "U-Statistics, M-Estimation and
Resampling"
Construct, Evaluate and Plot Value and Utility Functions
Implementing EFF-TOX and Monotone Utility Based Phase 12 Trials
P-Spline Regression for Utility Functions and Derived Measures
Annotate Variants in the Untranslated Regions
Tools for Generating and Handling of UUIDs
Unbinned weighted histogram analysis method (UWHAM)
The Uniform Manifold Approximation and Projection (UMAP) Method
for Dimensionality Reduction
Embedded JavaScript and WebAssembly Engine for R
Valence Aware Dictionary and sEntiment Reasoner (VADER)
Non-Domestic Vaccine Adverse Event Reporting System (VAERS)
Vaccine Data for Present
US Vaccine Adverse Event Reporting System (VAERS) Vaccine Data
for Present
Variational Approximations for Generalized Additive Models
Visualising Splicing at Single-Cell Resolution
A Tidy Interface to the 'Valhalla' Routing Engine
Validation Tools for Artificial Neural Networks
Validate Data in a Database using 'validate'
One-Sided Multivariate Testing Procedures for Rating Systems
Checking and Simplifying Validation Rule Sets
Velocity and Accuracy of the LOg-RAnk TEst
Results from the Virginia Lottery Draw Games
Variable Selection with Mixture of Models
A Monte Carlo Valuation Framework for Variable Annuities
Factor Analysis Controlling the Effects of Response Bias
Access the 'City of Vancouver' Open Data API
Identification and Statistical Analysis of Conserved Waters Near
Proteins
Lightweight Access to the 'Geospatial Data Abstraction Library'
('GDAL')
VAR modelling: estimation, testing, and prediction
Variable Banding of Large Precision Matrices
Optimal Binning of Continuous and Categorical Variables
Large-Scale Bayesian Variable Selection Using Variational
Methods
Multiple Change Point Detection in Structural VAR Models
Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Variance Estimation using Difference-Based Methods
Computes value at risk and expected shortfall for over 100
parametric distributions
Disease-Gene-Variant Relations Mining from the Public Databases
and Literature
Genetic Variability Analysis for Plant Breeding Research
High-Dimensional Screening for Semiparametric Longitudinal
Regression
A 'Sparklyr' Extension for 'VariantSpark'
RF Variable Importance for Arbitrary Measures
Testing Spatial Dependence Using Empirical Variogram
Variant Calling in Targeted Analysis Sequencing Data
Estimations for the Covariance of Estimated Parameters in Joint
Mean-Covariance Models
Heuristics Tools Based on Mutual Information for Variable
Ranking
An Algorithm for Morphometric Characters Selection and
Statistical Validation in Morphological Taxonomy
Sequential Forward Floating Selection using Jeffries-Matusita
Distance
Variable Selection for Model-Based Clustering of Mixed-Type Data
Set with Missing Values
Searchable Variable Explorer with Labelled Variables
Shrinkage Estimation Methods for Vector Autoregressive Models
Sign Restrictions, Bayesian, Vector Autoregression Models
Pricing a variance swap on an equity index
Variance Components Testing for Linear and Nonlinear Mixed
Effects Models
Tests for Error Autocorrelation, ARCH Errors, and Cointegration
in Vector Autoregressive Models
Miscellaneous Functions for Vasicek Distribution
Regression Modeling Using Vasicek Distribution
Vault Client for Secrets and Sensitive Data
Variational Bayes Discrete Mixture Model
Variational Bayes Latent Position Cluster Model for Networks
The Variational Bayesian Method for Sparse PCA
Variational Bayes Spike Regression Regularized Linear Models
Vector Binary Tree to Make Your Data Management More Efficient
Extend the 'copula' Package with Families and Models from
'VineCopula'
Vine Copula Change Point Detection in Multivariate Time Series
Variance-Covariance Matrices and Standard Errors
Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Comparison of Variance - Covariance Patterns
Discriminant Analysis Incorporating Individual Uncertainties
Variance Dispersion Graphs and Fraction of Design Space Plots
Variance dispersion graphs and Fraction of design space plots
for response surface designs
Plots of Scaled Prediction Variances for Response Surface
Designs
Visual Regression Testing and Graphical Diffing
Variable, Diversity and Joining Sequences from Various Species
Visualization of Distribution of Selected Model
Statistical Methods for Designing and Analyzing a Calibration
Study
Perform Set Operations on Vectors, Automatically Generating All
n-Wise Comparisons, and Create Markdown Output
Like Set Tools in 'Base' Package but Keeps Duplicate Elements
Vector Analysis using Graphical and Analytical Methods in 2D
Vector analysis using graphical and analytical methods in 3D
Vector Wavelet Coherence for Multiple Time Series
Tools to Encode Visualizations with the 'Grammar of
Graphics'-Like 'Vega-Lite' 'Spec'
Static and Dynamic 3D Plots for the 'vegan' Package
Access Vegetation Databases and Treat Taxonomy
Generate High-Resolution Venn and Euler Plots
Variable Selection for Heterogeneous Populations
Describe Pedigree Relationships in Words
Implementation of the 'Verhoeff' Check Digit Algorithm
Query and Install Specific Versions of Packages on CRAN
Creates Vertex Similarity Matrix for an Undirected Graph
Network Hierarchical Structure and Randomization
Store and Operate with Arbitrarily Large Integers
Gradient and Vesselness Tools for Arrays and NIfTI Images
Version, Share, Deploy, and Monitor Models
Linear Mixed Models - An Introduction with Applications in
Veterinary Research
Vaccine Efficacy Over Time - Variant Aware
Computation of v Values for U and Copula C(U, v)
Visual Field (VF) Progression Analysis and Plotting Methods
Vegetated Filter Strip and Erosion Model
Vector Generalized Linear and Additive Models
Additions and Extensions of the 'VGAM' Package
Virus-Host Codon Usage Co-Adaptation Analysis
Discrimination/Classification in very high dimension with linear
and quadratic rules
Vertical and Horizontal Inheritance Consistence Analysis
Interface to the 'VIAF' ('Virtual International Authority File')
API
The Variable Infiltration Capacity (VIC) Hydrological Model
Vaccine Induced Cellular Immunogenicity with Bivariate Modeling
Access Victorian Spatial Data Through Web File Services (WFS)
A Shiny App to Visualize Genetic Maps and QTL Analysis in
Polyploid Species
VIF Regression: A Fast Regression Algorithm For Large Data
Detecting Change-Points via VIFCP Method
Variational Bayesian Inference for Genome-Wide Regression
Visualization and Imputation of Missing Values
Perform Inference on Algorithm-Agnostic Variable Importance
Provides an Interface to the Department of Transportation VIN
Decoder
Multivariate Dependence Modeling with Vines
Plotting and Comparing Means with Violin Plots
1-D Scatter Plots with Jitter Using Kernel Density Estimates
Plot Categorical Data Using Quasirandom Noise and Density
Estimates
Computation of Volatility Impulse Response Function of
Multivariate Time Series
Colorblind-Friendly Color Maps (Lite Version)
Simulating Pollen Curves from Virtual Taxa with Different Life
and Niche Traits
Generation of Virtual Species Distributions
Phase Portraits of Functions in the Complex Number Plane
A Visual Tool for Behavior Analysis over Time
Phase I Dose Escalation Study Design for Vaccines
Modeling and Forecasting Visitor Counts Using Social Media
Network Visualization using 'vis.js' Library
Clinical Graphs and Tables Adhering to Graphical Principles
Automated Visualization of Statistical Tests
Visualization of Subgroups for Decision Trees
Graph Probability Distributions with User Supplied Parameters
and Statistics
Visualize Downloads from 'CRAN' Packages
Visualization 2D of Binary Classification Models
Visible Vowels: Visualization of Vowel Variation
A Shiny App for Visual Exploration of Hierarchical Clustering
Fitting Routines for the Vitality Family of Mortality Models
Variable Importance and Variable Interaction Displays
Visualize Draws from the Prior and Posterior Distributions
Variable Life Adjusted Display and Other Risk-Adjusted Quality
Control Charts
Visualization of Multidimensional Longitudinal Data
Frequency Matrix Approach for Assessing Very Low Frequency
Variants in Sequence Records
Variable Length Markov Chains ('VLMC') Models
Variable-Lag Time Series Causality Inference Framework
Quantify the Contractile Nature of Vessels Monitored under an
Operating Microscope
Variable Neighborhood Trust Region Search
Create and Manipulate Vocalisation Diagrams
Interactive Plotting of Three-Way Differential Expression
Analysis
Volume Approximation and Sampling of Convex Polytopes
Detailed Statistics on Volleyball Matches
Voronoi Treemaps with Added Interactivity by Shiny
Twitter Conversation Networks and Analysis
User Interface for Collecting and Analysing Social Networks
Collecting Social Media Data and Generating Networks for
Analysis
Generic Voss algorithm (random sequential additions)
United States House and Senate Voting Cartogram Generators
Voting Systems, Instant-Runoff Voting, Borda Method, Various
Condorcet Methods
Vowel Manipulation, Normalization, and Plotting
Mass-Univariate Voxelwise Analysis of Medical Imaging Data
Trees Geometry and Morphology from Unstructured TLS Data
Processing and Visualization of Visual Plankton Recorder Data
Change Point Estimation for Regression with Varying Segments and
Heteroscedastic Variances
Generate 3D visualizations for data exploration on the web
Read and Write Rectangular Text Data Quickly
Variance Ratio tests and other tests for Martingale Difference
Hypothesis
Variable selection for clustering and classification
Graphical Shim for Visual Survival Data Analysis
Goodness-of-Fit Tests Based on Kullback-Leibler Divergence
Variable Table for Variable Documentation
A Statistically Sound 'data.frame' Processor/Conditioner
Display Information About Nested Subsets of a Data Frame
Interactive Document for Working with Variance Analysis
Estimates the Variable Type in Error Afflicted Data
Visualization of Univariate Data for Comparison
Volume under the ROC Surface for Multi-Class ROC Analysis
Tools for Preprocessing Visual World Data
Useful functions for visual word recognition research
A Graphical Tool for Wavelet (Cross) Correlation and Wavelet
Multiple (Cross) Correlation Analysis
R Interface to W3C Markup Validation Services
While-Alive Loss Rate for Recurrent Event in the Presence of
Death
Colorblind-Friendly Palettes from Washington State
Multivariate Weather-State Approach Conditionally Skew-Normal
Generator
Autocorrelation and Heteroskedasticity Correction in Fixed
Effect Panel Data Model
Read and Write 'wal' Bitmap Image Files and Other 'Quake' Assets
Bayesian Generalized Linear Models with Time-Varying
Coefficients
A Modular Platform for Reproducible Modeling of Species Niches
and Distributions
The Wally Calibration Plot for Risk Prediction Models
Simulate Rehabilitation Strategies for Water Distribution
Systems
Retrieve 'Magic' Attributes from Files and Directories
Roster Generation of Turn for Weekdays:'warabandi'
Weaning Age Reconstruction with Nitrogen Isotope Analysis
Mixed Effects Modeling with Warping for Functional Data Using
B-Spline
Urban Water and Sanitation Survey Dataset
Wasserstein Barycenters of Subset Posteriors
Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic
Time Series Data
Create Waterfall Charts using 'ggplot2' Simply
Satellite Derived Water Quality Detection Algorithms
Spatial Watershed Aggregation and Spatial Drainage Network
Analysis
Sacramento and San Joaquin Valley Water Year Types
Computes Credible Intervals for Bayesian Wavelet Shrinkage
Wave Function Representation of Real Distributions
Fit the Wavelet-GARCH Model to Volatile Time Series Data
Functions for Computing Wavelet Filters, Wavelet Transforms and
Multiresolution Analyses
Wavelet Routines for Global and Local Multiple Regression and
Correlation
Data Estimation using Weighted Averages of Multiple Regressions
Weakly Associated Vectors (WAVE) Sampling
Basic Wavelet Routines for One-, Two-, and Three-Dimensional
Signal Processing
Wavelet Scalogram Tools for Time Series Analysis
Computation of Approximate Potentials for Weakly Non-Gradient
Fields
Wild Binary Segmentation for Multiple Change-Point Detection
Programmatic Access to Data and Statistics from the World Bank
API
Multiple Change-Point Detection for Nonstationary Time Series
Download Data from the Wittgenstein Centre Human Capital Data
Explorer
Survival Analysis for Weighted Composite Endpoints
Water Cloud Model (WCM) for the Simulation of Leaf Area Index
(LAI) and Soil Moisture (SM) from Microwave Backscattering
Semiparametric Proportional Means Regression of Weighted
Composite Endpoint
Detection of QTL effects in a small mapping population
World Development Indicators and Other World Bank Data
Pull Spatial Layers from 'WDNR ArcGIS REST API'
Interface to the World Database on Protected Areas
Tools to Read and Convert Wearables Data
Functions to Convert Between Weather Metrics
Tools for Handling and Scraping Instant Weather Forecast Feeds
Create Interactive Web Exercises in 'R Markdown' (Formerly
'webex')
Stubbing and Setting Expectations on 'HTTP' Requests
A New Format for Lossless and Lossy Image Compression
Basic and Advanced Statistical Power Analysis
Data and Functions for Web-Based Analysis
Tools for Reading Formatted Access Log Files
Access Domains and Search Popular Websites
A Wrapper Around 'WebTRIS' Traffic Flow API from Highways
England
Utility Functions for Developing Web Applications
Western Electric Company Rules (WECO) for Shewhart Control Chart
Weighted Estimated Equation (WEE) Approaches in Genetic
Case-Control Studies
A Metric to Rank Locations for Biodiversity Conservation
Functions to Access Women's Basketball Play by Play Data
Fits Data into 4-Parameters Weibull Distribution
Fits and Plots a Dataset to the Weibull Probability Distribution
Function
Goodness-of-Fit Test for Weibull Distribution (Weibullness)
Weibull Analysis for Reliability Engineering
Statistical Methods for Life Data Analysis
Weighted Generalised Covariance Measure Conditional Independence
Test
Weighted Portmanteau Tests for Time Series Goodness-of-fit
Weighted Scores Method for Regression Models with Dependent Data
Weighting for Covariate Balance in Observational Studies
Weights for Incomplete Longitudinal Data and Quantile Regression
Estimating Weight-Function Models for Publication Bias
Subject Weighted Support Vector Machines
A Hydraulics Package to Compute Open-Channel Flow over Weirs
Welch-James Statistic for Robust Hypothesis Testing under
Heterocedasticity and Non-Normality
Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum
Likelihood Estimation
Quantifying Performance of a Binary Classifier Through Weight of
Evidence
Weighted Linear Fixed Effects Regression Models for Causal
Inference
Whole Genome Average Interval Mapping for QTL Detection and
Estimation using ASReml-R
Weighted Generalized Estimating Equations and Model Selection
Incrementally Build Complex Plots using Natural Semantics
Reliably Return the Source and Call Location of a Command
{{mustache}} for R, Logicless Templating
Advanced Policing Techniques for the Board Game "Letters from
Whitechapel"
Whitening and High-Dimensional Canonical Correlation Analysis
White Test and Bootstrapped White Test for Heteroskedasticity
White Matter Normalization for Magnetic Resonance Images using
WhiteStripe
Evaluation of Genotyping Error in Genotype-by-Sequencing Data
Username, Full Name, Email Address, 'GitHub' Username of the
Current User
Calculate Results from WHO Model Disability Survey Data
Weighting by Inverse Distance with Adaptive Least Squares
Derivatives of the First-Passage Time Density and Cumulative
Distribution Function, and Random Sampling from the (Truncated)
First-Passage Time Distribution
Access Databases from the Federal Statistical Office of Germany
Functions and datasets of the german WikiBook "GNU R"
API Client Library for 'Wikidata Query Service'
Read-Write API Client Library for Wikidata
Get Facts and Data from Wikipedia and Wikidata
Scrape Lake Metadata Tables from Wikipedia
Public Subject Attention via Wikipedia Page View Statistics
Wilcoxon-based variable selection in cross-validation
Computes Values for the 1-Sample Wilcoxon Sign Rank Test for
Medians
Calculate Indices of Dynamic Interaction for Wildlife Tracking
Data
Best Hand Analysis for Poker Variants Including Wildcards
Compiles and Visualizes Wildfire, Climate, and Air Quality Data
Analysing Convergent Evolution using the Wheatsheaf Index
Interact with Peak Flow Data in the United Kingdom
Win Ratio for Prioritized Outcomes and 95% Confidence Interval
Estimates the Win-Ratio as a Function of Time
Quick and Dirty Estimates for Wildlife Populations
Weighted Inbred Strain Association Mapping
A Shiny Application for End-to-End Bayesian Decision Network
Analysis and Web-Deployment
Run Code 'With' Temporarily Modified Global State
Convert Between Spatial Objects and Well-Known Binary Geometry
A Mutual Information-Weighted k-NN Imputation Algorithm
Utilities for Well-Known Geometry Vectors
Variable Selection for Highly Correlated Predictors
Statistical Inference in Weighted Lindley Distribution
Regression Analysis Based on Win Loss Endpoints
Discriminant Analysis Methods by Weight Mahalanobis Distance and
bayes
Wavelet Leaders in Multifractal Analysis
Precise and Accurate Power of the Wilcoxon-Mann-Whitney Rank-Sum
Test for a Continuous Variable
Minimization Tool for Pharmacokinetic-Pharmacodynamic Data
Analysis
Weighted Nearest Neighbor Imputation of Missing Values using
Selected Variables
Computes Weight of Evidence and Information Values
Supervised Weight of Evidence Binning of Numeric Variables and
Factors
Spatiotemporal Boundary Detection Model for Areal Unit Data
Fast Matrix Operations via the Woodbury Matrix Identity
Generate Simulated Sawn Timber Strength Grading Data
115 Data Sets from "Introductory Econometrics: A Modern
Approach, 7e" by Jeffrey M. Wooldridge
Workflow for Open Reproducible Code in Science
Computing Word Alignment Using IBM Model 1 (and Symmetrization)
for a Given Parallel Corpus and Its Evaluation
Graph Functionality of Free Associated Words
Matches words in one file with words in another file
Estimates Economic Variables for Word-of-Mouth-Campaigns
R Implementation of Wordpiece Tokenization
Classical Word Pools Used in Studies of Learning and Memory
Develop Text Prediction Models Based on N-Grams
Rendering Word Documents with R Inline Code
List of English Words from the Scrabble Dictionary
Provide Tools to Extract and Analyze Word Vectors
A Framework for Reproducible and Collaborative Data Science
Create a Collection of 'tidymodels' Workflows
Analysis of Work Loops and Other Data from Muscle Physiology
Experiments
Standardize Plant Names According to World Flora Online
Taxonomic Backbone
Functions to Extract and Clean World Football (Soccer) Data
Import Surface Meteorological Data from NOAA Integrated Surface
Database (ISD)
Retriving Aphia Information from World Register of Marine
Species
World Register of Marine Species (WoRMS) Client
Clients to the 'Web of Science' and 'InCites' APIs
Tools for Analysing and Visualising Workplace Analytics Data
Weighted Piecewise Kernel Density Estimation
Win Ratio Analysis of Composite Time-to-Event Outcomes
Useful Wrappers Around Commonly Used Functions
Wrap R Tools for Debugging and Parametric Programming
Graphics in the Context of Analyzing High-Throughput Data
IRT Item-Person Map with 'ConQuest' Integration
Function for exporting data to SNNS pattern files
Export Data Frames to Excel 'xlsx' Format
Cross-Platform Perl Based R Function to Create Excel 2003 (XLS)
and Excel 2007 (XLSX) Files
Analyze Experimental High-Throughput (Omics) Data
A Collection of Robust Statistical Methods
Weighted Random Sampling without Replacement
Weighted Regression for Water Quality Evaluation in Tidal Waters
Internal Fragment Identification from Top-Down Mass Spectrometry
Who are You? Bayesian Prediction of Racial Category Using
Surname and Geolocation
Weighted Smooth Backfitting for Structured Models
Geometric Tools Based on Balanced/Unbalanced Optimal Transport
Style Time Series Plots Like the Wall Street Journal
Weighted Selection Probability for Rare Variant Analysis
Weighted Subspace Random Forest for Classification
Weighted SVM with boosting algorithm for improving accuracy
Wavelet Approaches to Studies of Synchrony in Ecology and Other
Fields
The W-Test for Genetic Interactions Testing
Computing Weighted Topological Overlaps (wTO) & Consensus wTO
Network
Weighted Method for Multiple-Criteria Decision Making
R Wrapper for the 'Wufoo.com' - The Form Building Service
Wegener Center Climate Uncertainty Explorer
Image Tools for Automated Wood Identification
Hypothesis Tests for Functional Time Series
Weighted Win Loss Statistics and their Variances
Wizardry Code Offensive Programming R Documentation
Wizardry Code Offensive Programming Test Generation
Interface to 'X12-ARIMA'/'X13-ARIMA-SEATS' and Structure for
Batch Processing of Seasonal Adjustment
Provide the 'x13ashtml' Seasonal Adjustment Binary
Tools for Working with 3D Surface Measurements
Genomic Simulation of Purebred and Crossbred Populations
Extraction of Business Financial Information from 'XBRL'
Documents
Estimating a (c)DCC-GARCH Model in Large Dimensions
Common Infrastructure for Extensions of Exponential Random Graph
Models
Supporting Functions for Packages Maintained by 'Yihui Xie'
Convert Trained 'XGBoost' Model to SQL Query
Interface to the XGobi and XGvis programs for graphical data
analysis
Association Measurement Through Cross Rank Increments
Plotting ggplot2 Graphics in an XKCD Style
Genetic Association Models for X-Chromosome SNPS on Continuous,
Binary and Survival Outcomes
Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files
Read and Write 'Excel' Sheets into and from List of Data Frames
Package required POI jars for the xlsx package
A Toolbox for Multivariate Meta-Analysis
Xiaobei's miscellaneous classes and functions
Tools for Parsing and Generating XML Within R and S-Plus
Converting XML Documents into Relational Data Models
Comfortably Converting XML Documents to Dataframes and Vice
Versa
Implementation of the Remote Procedure Call Protocol ('XML-RPC')
Generate XMR Control Chart Data from Time-Series Data
Two-Step Kernel Ridge Regression for Network Predictions
Exact Goodness-of-Fit Test for Multinomial Data with Fixed
Probabilities
Tools for Analyzing Crossover Interference
Generates Expectations for 'testthat' Unit Testing
Providing Interactive Interpretations and Explanations of
Statistical Results
Graphical Diagnostics for Pharmacometric Models: Extension to
'nlmixr'
Diagnostics for Nonlinear Mixed-Effect Models
Delineate Region of Interests (ROI's) and Extract Time-Series
Data from Digital Repeat Photography Images
Assisted Model Building, using Surrogate Black-Box Models to
Train Interpretable Spline Based Additive Models
Cross-National Data on Sub-National Violence
Terminal Text Formatting Using Escape Sequences
Feasible Estimation of the Two-Way Fixed Effect Model
Regularized Regression with Differential Penalties Integrating
External Information
Calculates Credit Risk Valuation Adjustments
Item Response Theory and Computer-Based Testing in R
The 'xyz' Algorithm for Fast Interaction Search in
High-Dimensional Data
Yet Another Canonical Correlation Analysis Package
Yet Another General Regression Neural Network
Nearest Neighbor Observation Imputation and Evaluation Tools
A Simple Wrapper for the k-Means Library Yakmo
Data exploration tools from Yale University
Methods to Convert R Data to YAML and Back
Writing 'YAML' Headers for 'R-Markdown' Documents
Multivariate Methods Based on Projections and Related Concepts
Yet Another Probabilistic Neural Network
Track Estimation using YAPS (Yet Another Positioning Solver)
Tidy Characterizations of Model Performance
A Companion to the e-Book "YaRrr!: The Pirate's Guide to R"
Yates' Algorithm in 2^n Factorial Experiment
Yield curve or zero-coupon prices interpolation and
extrapolation
Modelling and estimation of the yield curve
Compute Expected Years of Life Lost (YLL) and Average YLL
Write 'YAML' for 'R Markdown', 'bookdown', 'blogdown', and More
A Reactive Web Framework Built on 'shiny'
Analyze Cricket Performances Based on Data from Cricsheet
Downloading YouTube Subtitle Transcription in a Tidy Tibble Data
Frame
Longitudinal Wages Data from the National Longitudinal Survey of
Youth 1979
Yang and Prentice Model with Baseline Distribution Modeled by
Bernstein Polynomials
Interim Monitoring Using Adaptively Weighted Log-Rank Test in
Clinical Trials
The Short-Term and Long-Term Hazard Ratio Model for Survival
Data
Yang and Prentice Model with Piecewise Exponential Baseline
Distribution
A Graphical User Interface for the 'yuima' Package
Supporting Functions for Packages Maintained by 'YuLab-SMU'
Utilities to Extract and Process 'YAML' Fragments
Simple Ecological Statistics from the NEON Network
Treatment of Zeros, Left-Censored and Missing Values in
Compositional Data Sets
Multiple, Unpacking, and Destructuring Assignment
Working with Dynamic Models for Agriculture and Environment
Zero Order vs (Semi) Partial Correlation Test and CI
Functions to Compute Compositional Turnover Using Zeta Diversity
Zero Inflated Gamma Poisson Shrinker with Adverse Event Ontology
Zero-Inflated Beta-Binomial Modeling of Microbiome Count Data
Differential Abundance Analysis for Metagenomic Data via
Zero-Inflated Beta Regression
Bayesian Inference for Zero-Inflated Count Models
R Interface to Zillow Real Estate and Mortgage Data API
Zero-Inflated Models (ZIM) for Count Time Series with Excess
Zeros
Bayesian Methods in the Analysis of Zero-Inflated Poisson Model
Data & Functions for Working with US ZIP Codes
Statistical Models for Word Frequency Distributions
Zero-Inflated Poisson Hidden (Semi-)Markov Models
Creates a Data Frame of US Zip Codes in a Given Radius from a
Given US Zip Code
Permutations Tests and Performance Indicator for Zero-Inflated
Proportions Response
Small Area Estimation with Zero-Inflated Model
Z(log) Transformation for Laboratory Measurements
Seismic Reflection and Scattering Coefficients
Bayesian Inference for Beta Regression and Zero-or-One Inflated
Beta Regression
Bayesian Zero-and-One Inflated Dirichlet Regression Modelling
Interface to the 'Zoltar' Forecast Repository API
Utilities for Zonation Spatial Conservation Prioritization
Software
Create and Explore Geographic Zoning Systems
S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Analytical Tools for Zooarchaeological Data
Analyze Text, Audio, and Video from 'Zoom' Meetings
Reproducible, Accessible & Shareable Species Distribution
Modelling
Dynamic Plots for Time Series Forecasting
Zebra-Striped Tables in LaTeX and HTML Formats
Functions to Import Data from 'z-Tree' into R
Run a Ztype Game Loaded with R Functions
Lite Wrapper for the 'Zamzar File Conversion' API
https://www.acumos.org (Acumos project website)
https://gerrit.acumos.org/r/gitweb?p=acumos-r-client.git (code
repository) https://github.com/acumos/acumos-r-client (mirror
repository)
https://docs.acumos.org/en/latest/submodules/acumos-r-client/docs
(docs)
For source code, development versions and issue tracker see
https://github.com/boost-R/betaboost
http://www.bifie.at,
https://www.bifie.at/bildungsforschung/forschungsdatenbibliothek,
https://www.bifie.at/large-scale-assessment-mit-r-methodische-grundlagen-der-oesterreichischen-bildungsstandardueberpruefung,
https://github.com/alexanderrobitzsch/BIFIEsurvey,
https://sites.google.com/site/alexanderrobitzsch2/software
https://www.r-project.org,
https://bigdata.oden.utexas.edu/software/1035/
http://glaros.dtc.umn.edu/gkhome/views/metis
https://www.pcg-random.org/download.html
https://gcc.gnu.org/projects/gomp/
For more details, see de Oliveira et. al (2018)
<doi:10.1285/i20705948v11n1p108>.
https://tools.ietf.org/html/rfc7932 (spec)
https://github.com/google/brotli#readme (upstream)
http://github.com/jeroen/brotli#read (devel)
https://docs.ropensci.org/cld2/ (docs)
https://github.com/ropensci/cld2 (devel)
https://github.com/cld2owners/cld2 (upstream)
https://docs.ropensci.org/cld3/, https://github.com/ropensci/cld3
(devel) https://github.com/google/cld3 (upstream)
https://docs.ropensci.org/crul/ (website)
https://github.com/ropensci/crul (devel)
https://books.ropensci.org/http-testing/ (user manual)
http://talgalili.github.io/dendextend/,
https://github.com/talgalili/dendextend/,
https://cran.r-project.org/package=dendextend,
https://www.r-statistics.com/tag/dendextend/,
https://academic.oup.com/bioinformatics/article/31/22/3718/240978/dendextend-an-R-package-for-visualizing-adjusting
https://github.com/ubcxzhang/DesignCTPB, Y Lu (2020)
<doi:10.1002/sim.8868>
https://github.com/datashield/DSOpal/,
https://datashield.github.io/DSOpal/, https://www.obiba.org,
https://www.obiba.org/pages/products/opal/,
https://www.datashield.org,
https://academic.oup.com/ije/article/43/6/1929/707730,
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008880
https://ffscrapr.ffverse.com, https://github.com/ffverse/ffscrapr,
https://api.myfantasyleague.com/2020/api_info,
https://docs.sleeper.app,
https://www.fleaflicker.com/api-docs/index.html,
https://www.espn.com/fantasy/,
https://www.nflfastr.com/reference/load_player_stats.html
For source code, development versions and issue tracker see
https://github.com/boost-R/gamboostLSS
https://docs.ropensci.org/gert/ (website),
https://github.com/r-lib/gert (devel), https://libgit2.org
(upstream)
https://docs.ropensci.org/hunspell/ (docs),
https://github.com/ropensci/hunspell (devel)
https://hunspell.github.io (upstream)
https://CRAN.R-project.org/package=imputeFin,
https://github.com/dppalomar/imputeFin,
https://www.danielppalomar.com,
https://doi.org/10.1109/TSP.2019.2899816,
https://doi.org/10.1109/TSP.2020.3033378
https://docs.ropensci.org/jsonld,
https://github.com/ropensci/jsonld#readme (devel)
https://www.w3.org/TR/json-ld (spec)
http://www.kasparrufibach.ch ,
http://www.ceremade.dauphine.fr/~fadoua ,
http://www.math.yorku.ca/~hkj
https://github.com/jeroen/mongolite/ (devel)
https://jeroen.github.io/mongolite/ (user manual)
http://mongoc.org/ (upstream)
http://multcomp.R-forge.R-project.org The publishers web page is
http://www.crcpress.com/product/isbn/9781584885740
https://github.com/obiba/opalr/, https://www.obiba.org/opalr/,
https://www.obiba.org/pages/products/opal/,
https://academic.oup.com/ije/article/46/5/1372/4102813,
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008880,
https://www.datashield.org/
http://en.opasnet.org/w/Main_Page ,
http://en.opasnet.org/w/Modelling_in_Opasnet ,
http://en.opasnet.org/w/OpasnetUtils
https://docs.ropensci.org/pdftools/ (website)
https://github.com/ropensci/pdftools#readme (devel)
https://poppler.freedesktop.org (upstream)
https://cran.r-project.org/package=PGRdup,
https://github.com/aravind-j/PGRdup,
https://doi.org/10.5281/zenodo.841963,
https://aravind-j.github.io/PGRdup/,
https://www.rdocumentation.org/packages/PGRdup
https://trevorldavis.com/piecepackr/ (blog),
https://trevorldavis.com/R/piecepackr/ (pkgdown),
https://groups.google.com/forum/#!forum/piecepackr (forum)
https://www.prosettastone.org/ (project description),
https://choi-phd.github.io/PROsetta/ (documentation)
https://github.com/abarbour/psd, Barbour and Parker (2014):
https://doi.org/10.1016/j.cageo.2013.09.015, Riedel and
Sidorenko (1995): https://doi.org/10.1109/78.365298
https://github.com/jwood000/RcppAlgos, https://gmplib.org/,
https://github.com/kimwalisch/primesieve, http://libdivide.com,
https://github.com/kimwalisch/primecount,
http://ridiculousfish.com/,
http://sweet.ua.pt/tos/software/prime_sieve.html
https://github.com/jwood000/RcppBigIntAlgos, https://gmplib.org/,
http://mathworld.wolfram.com/QuadraticSieve.html,
http://micsymposium.org/mics_2011_proceedings/mics2011_submission_28.pdf,
https://www.math.colostate.edu/~hulpke/lectures/m400c/quadsievex.pdf,
https://blogs.msdn.microsoft.com/devdev/2006/06/19/factoring-large-numbers-with-quadratic-sieve/
<https://bovineaerospace.wordpress.com/category/r/ >,
<https://r-forge.r-project.org/projects/rnomads/ >,
<https://www.r-project.org >
https://github.com/ropensci/solrium (devel),
https://docs.ropensci.org/solrium/ (user manual)
https://github.com/ropensci/spocc (devel),
https://docs.ropensci.org/spocc/ (user manual)
The database is described at:
http://astro.df.unipi.it/stellar-models/
https://docs.ropensci.org/taxize/ (website),
https://github.com/ropensci/taxize (devel), https://taxize.dev
(user manual)
Chanwoo Lee and Miaoyan Wang. Tensor denoising and completion
based on ordinal observations. ICML, 2020.
http://proceedings.mlr.press/v119/lee20i.html Chanwoo Lee and
Miaoyan Wang. Beyond the Signs: Nonparametric tensor completion
via sign series. 2021.  https://arxiv.org/abs/2102.00384
Chanwoo Lee, Lexin Li, Hao Helen Zhang, and Miaoyan Wang.
Nonparametric trace regression in high dimensions via sign
series representation. 2021. https://arxiv.org/abs/2105.01783
https://docs.ropensci.org/unrtf/,
https://github.com/ropensci/unrtf (devel)
https://www.gnu.org/software/unrtf/ (upstream)
https://github.com/ropensci/vcr/ (devel)
https://books.ropensci.org/http-testing/ (user manual)
https://github.com/pmur002/vwline,
https://stattech.wordpress.fos.auckland.ac.nz/2017/05/19/2017-01-variable-width-lines-in-r/,
https://stattech.wordpress.fos.auckland.ac.nz/2017/06/07/2017-02-variable-width-line-ends-and-line-joins/,
https://stattech.wordpress.fos.auckland.ac.nz/2017/06/15/2017-03-offset-curves-for-variable-width-x-splines/,
https://stattech.wordpress.fos.auckland.ac.nz/2018/11/02/2018-11-variable-width-bezier-splines-in-r/
https://github.com/ropensci/webmockr (devel)
https://books.ropensci.org/http-testing/ (user manual)
https://docs.ropensci.org/webmockr/ (documentation)
https://docs.ropensci.org/worrms,
https://github.com/ropensci/worrms (devel), https://taxize.dev
(user manual)
https://docs.ropensci.org/writexl/ (website)
https://github.com/ropensci/writexl (devel)
https://libxlsxwriter.github.io (upstream)
knitr, rmarkdown, ggplot2, dplyr, dbplyr
rmdformats, knitr, kableExtra, rmarkdown, RCurl,
rvcheck, badger, rentrez
Orphaned and corrected on 2020-09-19 as check problems were not corrected in time.
Orphaned on 2021-12-02 at the request of one of the authors.
Orphaned and corrected on 2019-07-02 as installation issues were not addressed.
abctools, baySeq, BCBCSF, CNORdt, CPMCGLM, crrcbcv, depth, FactorCopula, FISHalyseR, flowMap, fractaldim, funLBM, informR, interplot, magic, mlma, mlogitBMA, multicon, MultiPhen, multipol, mvmesh, mvProbit, mvSLOUCH, plfm, RcmdrPlugin.EACSPIR, RcmdrPlugin.EBM, riboSeqR, smfsb, spatstat.sparse, SphericalCubature, stars, wux, zoib
ade4TkGUI, adegenet, adehabitatHR, adehabitatHS, adehabitatLT, adephylo, Autoplotprotein, cati, covRNA, ecospat, FactoClass, FD, flowMap, genoPlotR, mbclusterwise, omicade4, oncomodel, packMBPLSDA, pamctdp, plotprotein, qha, sideChannelAttack, subniche, treespace
GNE, lba, LEAPFrOG, mbbefd, SimDissolution, TestingSimilarity
adhoc, apex, apTreeshape, BAMMtools, BarcodingR, BBMV, BDMMAcorrect, Canopy, caper, cati, Claddis, clstutils, coalescentMCMC, CommEcol, convevol, corHMM, ctpm, dispRity, distory, diversitree, ecospat, FD, geiger, hisse, HyPhy, ips, iteRates, jrich, MCMCglmm, MCMCtreeR, MiSPU, MonoPhy, motmot, MPSEM, MSCquartets, MSCsimtester, mvMORPH, nichevol, OUwie, paleotree, pastis, pegas, perspectev, pez, phangorn, phyclust, phyloclim, PhylogeneticEM, phylolm, phylotools, phyloTop, phytools, picante, quiddich, recluster, RNeXML, RPANDA, Rphylip, Rphylopars, rwty, sangeranalyseR, sensiPhy, strap, StructFDR, surface, TESS, treebase, treedater, treeducken, TreePar, treeplyr, TreeSim, treespace, treestartr, TreeTools, VDJgermlines, windex
factorEx, FindIt, interplot, merTools, RegParallel, swissMrP
arc, arulesCBA, arulesNBMiner, arulesSequences, arulesViz, CoRegNet, fdm2id, GroupBN, ibmdbR, qCBA, rCBA, recommenderlab, RSarules
BinNonNor, bunching, GNE, LIHNPSD, mederrRank, mvord, NPCD, PoisBinNonNor, PoisBinOrdNonNor, PoisNonNor, RobPer
BatchJobs, cmaesr, ecr, EstimationTools, mcMST, netgen
EQUIVNONINF, gmeta, goseq, MIDN, MPINet, SubpathwayLNCE
iBBiG, QUBIC, RcmdrPlugin.BiclustGUI, runibic, s4vd, superbiclust
bigalgebra, biganalytics, biglasso, bigtabulate, Bios2cor, ChIPXpressData, hibayes, KnockoffScreen, MACPET, oem
BayesSummaryStatLM, bit64, ff, NEff, TOC
apng, bnstruct, cdb, CHCN, couchDB, FCSlib, GENEAread, muma, R4CouchDB, rattle
BCEE, iterativeBMA, iterativeBMAsurv, mlogitBMA, networkBMA, phenoTest
acde, addhaz, aods3, BACprior, BCEE, bcROCsurface, bda, bootES, boottol, briKmeans, cardidates, CircStats, Comp2ROC, Compind, cramer, dawai, DCluster, dendRoAnalyst, dhglm, EDOIF, equivalence, experiment, fishmove, frailtypack, funmediation, gb, Hiiragi2013, HPbayes, hsem, imputeYn, IUPS, mdhglm, MDSGUI, MisRepARMA, NegBinBetaBinreg, Oncotree, ordinalCont, phase1RMD, popKorn, prLogistic, PsumtSim, QuantPsyc, R2WinBUGS, random.polychor.pa, reglogit, relaimpo, ROCpAI, ROntoTools, rtip, sampSurf, simboot, texteffect, timesboot, tlm, truncSP, verification, wBoot
AER, alr4, ALSM, bgmm, candisc, CrypticIBDcheck, Deducer, dhglm, DistatisR, DJL, EdSurvey, fitplc, genridge, GEWIST, gma, granova, GrimR, GroupComparisons, heplots, hysteresis, LPGraph, macc, micEconCES, mlma, mma, mmabig, muma, mvinfluence, NitrogenUptake2016, papeR, pequod, phia, quantification, quickregression, Rcmdr, RcmdrMisc, SAEval, ScottKnottESD, stepp, systemfit
adabag, AntAngioCOOL, AutoStepwiseGLM, branchpointer, dtree, fscaret, GWAS.BAYES, hsdar, iForecast, JQL, manymodelr, maPredictDSC, MLSeq, MobileTrigger, MRReg, natstrat, RandPro, SQB
Basic4Cseq, flux, GAMens, iCluster, meta4diag, muma, sSeq
changepoint.geo, changepoint.influence, changepoint.np, deltaGseg, EnvCpt, GENEAclassify, SISPA
cmaesr, forestplot, genomicInstability, netgen, ODEnetwork, ODEsensitivity, poissonMT, SeqExpMatch, smoof, SNPhood
ClimInd, cmrutils, crn, ensembleBMA, ensembleMOS, ImportExport, Interpol.T, kerdiest, MetGen, MicSim, PhysActBedRest, RH2, RMAWGEN, StreamMetabolism
countToFPKM, gmoviz, MetCirc, RNAsmc, yarrr
adehabitatLT, CircOutlier, interfr, moveHMM, verification
Bios2cor, CircOutlier, depth, GInSARCorW, isocir, NPCirc, SOPIE
BarcodingR, CepLDA, clv, ddalpha, EILA, geneSignatureFinder, kmlShape, longitudinalData, maPredictDSC, mda, MOCCA, Modalclust, MTPS, multisom, protoclass
binseqtest, CTP, EurosarcBayes, gen2stage, gMWT, OptInterim
abodOutlier, aCGH, AssocTests, bios2mds, BoutrosLab.plotting.general, briKmeans, ccChooser, ClassDiscovery, clustEff, clusterSim, ClusterStability, clv, clValid, cogena, convevol, CORM, dave, dbstats, divo, evaluomeR, FunCluster, GARS, gclus, geneSignatureFinder, GLDEX, Hiiragi2013, hopach, ICGE, IntNMF, isopam, LocalControlStrategy, maptree, massiR, mdqc, MineICA, MiSPU, MLInterfaces, MOCCA, NMF, nomclust, optpart, Oscope, PAMhm, pamr, RnBeads, RPMM, STROMA4, StructFDR, treeClust, TSclust, WeightedCluster
APtools, cohorttools, crrp, crrstep, currentSurvival, frailtyHL, gcerisk, GFGM.copula, missDeaths, QHScrnomo
adaptMCMC, adaptsmoFMRI, AdjBQR, ArchaeoChron, ArchaeoPhases, bamlss, BayesARIMAX, BayesBEKK, bayesDccGarch, BayesFactor, BayesLCA, bayespref, BayesSAE, bayesSurv, BayesTwin, BayLum, BAYSTAR, bhm, bhpm, bkmrhat, blatent, BMAmevt, bmk, boral, bsem, c212, coalescentMCMC, codadiags, cplm, cubfits, dclone, DPP, elrm, endorse, EpiILM, EpiILMCT, FME, gaga, gconsensus, gemtc, gfiExtremes, HelpersMG, Hmsc, HybridMC, hzar, ICBayes, icenReg, iFad, InSilicoVA, lira, MasterBayes, MBSP, mcgibbsit, MCMC.OTU, MCMC.qpcr, MCMCglmm, MCMCpack, mcmcplots, MCMCtreeR, mcsm, metropolis, ocomposition, pexm, phase1PRMD, phase1RMD, PICBayes, popReconstruct, prevalence, R2WinBUGS, ramps, relevent, RGE, rjags, Rlda, robustsae, RxCEcolInf, siar, spNNGP, spsurv, TESS, Ultimixt, zoib
asht, kaps, pairwiseCI, pAnalysis, RcmdrPlugin.coin, uplift
bamlss, biclust, BiplotGUI, frontiles, grpCox, L1mstate, MineICA, mixAK, NonParRolCor, paramGUI, prefmod, R2BayesX, RolWinMulCor, smacof, snpStatsWriter, VIM, W2CWM2C
adea, AssocTests, bayess, bgmm, complexity, fcd, FLR, forensic, GameTheory, genetics, manet, NSM3, PoissonSeq, prob, QuACN, REREFACT, RMallow, SNPmaxsel, steadyICA, symmoments
CONCUR, cvmdisc, FSTpackage, goProfiles, iGasso, LGEWIS, LGRF, MiST, ofGEM, OmnibusFisher, pedgene, POINT, rvTDT, SEAGLE
ADDT, cgam, ConSpline, csurvey, DoubleCone, isotonic.pen, ShapeChange, ShapeSelectForest
BivarP, censorcopula, ClusterStability, CoClust, CoImp, CopCTS, COST, gofCopula, HAC, HMMcopula, ipptoolbox, lcopula, nCopula, NCSCopula, RGENERATEPREC, VC2copula, vfcp, vines
BinNonNor, BinNor, care, COMBAT, EDISON, FPCA2D, FRCC, GeneNet, GlobalAncova, GLSME, Hotelling, HPbayes, kcirt, leapp, longitudinal, MAVTgsa, mgpd, miRtest, MultiOrd, mvMORPH, OrdNor, OUwie, PoisBinNonNor, PoisBinOrd, PoisBinOrdNonNor, PoisBinOrdNor, PoisNonNor, PoisNor, qtlhot, sda, sideChannelAttack, SMFI5, splitFeas, st, trigger, whitening
cold, GRCdata, hyper2, optimStrat, PCMRS, SphericalCubature, symmoments, yuima
CytobankAPI, genomes, GoogleKnowledgeGraphR, HiCBricks, RapidoPGS, VarfromPDB
Ac3net, AF, amplican, autostsm, bdots, bea.R, behavr, bggAnalytics, birankr, cdparcoord, Chicago, chicane, chimeraviz, classifierplots, CNVgears, CoSMoS, coveffectsplot, cvAUC, damr, dbWebForms, deconvR, dfmeta, easycsv, EBPRS, edgeRun, edl, eurocordexr, EurosarcBayes, eyeTrackR, FeatureImpCluster, FOCI, fplot, fplyr, FRASER, gbp, gdxdt, GenoGAM, GenomicTools, GenomicTools.fileHandler, GenoScan, GladiaTOX, GOTHiC, hdd, heims, HMMcopy, HPLB, immunarch, intervalaverage, KPC, libbib, LKT, lookupTable, lori, LSPFP, metaforest, metavizr, methrix, microseq, miLineage, mind, ModCon, musica, nlpred, nmm, nosoi, openSTARS, orgR, OUTRIDER, pairkat, panelaggregation, partools, pgTools, pkggraph, QuantTools, QuartPAC, RapidoPGS, rasterDT, rBiopaxParser, Rbitcoin, rblt, RCAS, RegParallel, reinsureR, rfPred, rMIDAS, robCompositions, RSauceLabs, rTLS, RWildbook, sangeranalyseR, scATAC.Explorer, shinyML, skm, slim, SNPhood, textTools, TIN, ttwa, twangRDC, twl, validateRS, WGScan, word.alignment, ZIprop
GE, GeoFIS, nmarank, pmxTools, triversity
cuRe, ilc, Interpol.T, kerdiest, modiscloud, RcmdrPlugin.survival, relsurv, RMAWGEN
BiocFileCache, dplyr.teradata, grasp2db, omopr, SQLDataFrame
DeducerPlugInExample, DeducerPlugInScaling, DeducerSpatial, DeducerSurvival, DeducerText
adehabitatHR, BiplotGUI, bSims, ibeemd, PERMANOVA
EcoHydRology, EstimationTools, galts, micEconCES, nmm, quickpsy, selectMeta, spsh
BacArena, bvpSolve, Data2LD, deBInfer, deTestSet, DIMORA, DivE, ecolMod, ecosim, embryogrowth, epimdr, EpiModel, fda, FME, GPoM, GPoM.FDLyapu, growthrates, hgm, hisse, MEIGOR, neuRosim, nlmeODE, ODEnetwork, ODEsensitivity, pauwels2014, primer, ReacTran, SBMLR, shinySIR, simecol, TDCor, TESS, TreePar
corregp, CTP, ecolMod, genpathmox, GMRP, LIM, Rramas
DiceEval, DiceOptim, DiceView, fanovaGraph, GPareto, KrigInv, MuFiCokriging, profExtrema
disordR, ElstonStewart, gmDatabase, gWidgets2, gWidgets2tcltk, likelihoodAsy, metavizr, ProjectTemplate, rgdax, rgeoda, RGoogleAnalytics, SummarizedBenchmark, weaver
distrEllipse, distrEx, distrMod, distrRmetrics, distrSim, distrTeach, mediationsens, RandVar, RobAStBase, RobLoxBioC, ROptEst, ROptEstOld, UMR
distrEllipse, distrMod, distrTeach, RandVar, RobAStBase, ROptEst, ROptEstOld
DoE.wrapper, FrF2, RcmdrPlugin.DoE, sFFLHD, SOAs
adabag, ADMMsigma, AMARETTO, changepointTests, cnvGSA, conformalClassification, CVglasso, ENmix, evian, fastLiquidAssociation, flowMap, gamlss.foreach, GaussianHMM1d, GenHMM1d, GiNA, glmm, GWAS.BAYES, HMMcopula, idmTPreg, IDSpatialStats, iIneq, integIRTy, JMbayes, kcpRS, LipidMS, mbclusterwise, MEGENA, MixedIndTests, MixRF, MonoInc, MoonlightR, mSimCC, NNS, NonParRolCor, OmicKriging, perspectev, ramr, ramsvm, RegParallel, REPTILE, RGBM, Rlda, rlfsm, Rlof, RootsExtremaInflections, RPPASPACE, SamplingStrata, SCPME, sdcTarget, SDDE, SEA, SeqExpMatch, SeqGSEA, SeqKat, sglOptim, SICtools, simMP, SIMMS, SISIR, sms, sRDA, turboEM, unbalanced, vtpnet, weightQuant, yaConsensus
AlpsNMR, AMARETTO, Andromeda, AnVIL, AQuadtree, arse, autoCovariateSelection, BatchGetSymbols, BiocSet, BTYD, BubbleTree, bulletcp, bunching, CausalQueries, cchsflow, censusr, ceRNAnetsim, chunked, ClusterBootstrap, CONCUR, contTimeCausal, crplyr, cspp, cvcqv, depmap, diffEnrich, disk.frame, dplyr.teradata, dvmisc, efreadr, egor, EHRtemporalVariability, EpiCurve, EpiStats, estimraw, etl, eyetrackingR, flatr, forecastML, funcharts, gen5helper, geotoolsR, GerminaR, gesso, ggmcmc, ggraptR, ggvenn, grasp2db, Guitar, HEDA, HiCcompare, HPAStainR, huito, immunarch, implyr, integr, inti, IPDfromKM, itraxR, ktaucenters, malan, metabCombiner, microclass, micropan, microseq, mnreadR, monobin, mosaicModel, nitrcbot, nlshelper, nowcastDFM, omopr, optimalFlow, Organism.dplyr, palmid, PAMpal, PAsso, pbixr, phenModel, PogromcyDanych, PolicyPortfolios, prodest, promotionImpact, PupillometryR, PupilPre, PWFSLSmoke, qqr, QuaternaryProd, quickpsy, radiant.data, recipes, ReDaMoR, RegEnrich, reinsureR, repello, rfishnet2, Rfssa, rise, rmdHelpers, Rtpca, samplesize4surveys, sdStaf, SEERaBomb, sfc, shinyML, shinySIR, SimDissolution, simITS, sourceR, spdplyr, SQLDataFrame, stcos, sugarbag, SummarizedBenchmark, surveybootstrap, survHE, tab, tangram.pipe, TeachHist, TeachingSampling, TKCat, toolmaRk, TPP, TPP2D, treasuryTR, treeplyr, tscR, turfR, TwoArmSurvSim, ushr, visae, VWPre
BioNetStat, ChAMP, frequency, monobinShiny, RCAS, REPPlabShiny, sangeranalyseR, SRS
AIMS, BayesLCA, bios2mds, ClueR, EMDSVRhybrid, GameTheoryAllocation, Inventorymodel, LedPred, MAclinical, malani, manymodelr, maPredictDSC, MARSSVRhybrid, Mfuzz, MTPS, NeuCA, obliqueRF, PASWR, penalizedSVM, RMediation, SigCheck, smacof, SwathXtend, tiger, TNBC.CMS, VHDClassification
bacon, BDMMAcorrect, BivRegBLS, CrypticIBDcheck, DMRMark, easyCODA, FreeSortR, mada, mdsdt, MetabolAnalyze, RAMpath, RXshrink, SMPracticals
CTP, LabApplStat, lsmeans, pubh, RRphylo
Bergm, dnr, ergm.count, ergm.ego, ergm.rank, ergm.userterms, gwdegree, hergm, latentnet, lvm4net, mlergm, statnetWeb, tergm, tergmLite, VBLPCM, xergm.common
condmixt, ddst, ensembleMOS, evt0, ipptoolbox, mgpd, Renext, RobExtremes, ROptEstOld, truncdist
Factoshiny, HDoutliers, qha, R.temis, RcmdrPlugin.FactoMineR, SensoMineR, Xplortext
bahc, cummeRbund, ICGE, PropClust, WGCNA
AnalyzeFMRI, fastHICA, gogarch, isva, MineICA, rgr
deltaGseg, distrRmetrics, fAsianOptions, fAssets, fBonds, fCertificates, fCopulae, fExoticOptions, fExtremes, fGarch, fMultivar, fNonlinear, fOptions, fPortfolio, fRegression, fTrading, fUnitRoots, HBSTM, LSMonteCarlo
CCA, cfda, clustEff, CollocInfer, ctmcmove, cyphid, Data2LD, dfrr, fda.usc, fdatest, FDRreg, freqdom.fda, FRGEpistasis, funcharts, funFEM, funHDDC, funLBM, geofd, mar1s, MRmediation, NITPicker, pencopulaCond, pendensity, penDvine, pfica, quantreg.nonpar, Rsfar, sde, sft, switchnpreg, TestGardener, vows
DBGSA, DiffCorr, DMCHMM, GeneCycle, GeneNet, GSRI, HybridMTest, les, sda, st, TBEST
ADaCGH2, BayesSummaryStatLM, cn.farms, ETLUtils, ffbase, geoTS, PopGenome, propagate, rcage, RecordLinkage, RnBeads
ASMap, aSPU, autocart, BaySIC, Canopy, CCA, CNLTtsa, EMD, ExpAnalysis3d, fcr, FCSlib, fpa, geoelectrics, geosptdb, gptk, gwrr, highriskzone, ibeemd, LatticeKrig, LSC, metapone, mgpd, mvLSW, NGSSEML, paramGUI, reddPrec, RnBeads, SpatialFloor, SpatialVx, SpeCond, spThin, SynchWave, TIMP, TrackReconstruction, verification, Voss, wux
BMT, enveomics.R, genasis, GofCens, goft, mbbefd, OneStep, qmap, SCI, stratifyR, vsgoftest
evaluomeR, flexmixNL, MAP, psychomix, scde
fCI, freqparcoord, HDoutliers, HellCor, IndepTest, MBC, probout, regtools, scAlign, scCAN
adabag, baggingbwsel, biganalytics, bigparallelr, bigSurvSGD, bumphunter, cellmigRation, CenBAR, cffdrs, changepointTests, cnvGSA, conformalClassification, CoTiMA, crso, cubfits, datanugget, Diderot, DNMF, doFuture, doMC, doMPI, doParallel, doRedis, doRNG, doSNOW, DTRlearn2, ellipticalsymmetry, ENmix, epihet, EPX, evian, flowMerge, GA, gam, gamlss.foreach, gamsel, GAparsimony, GaussianHMM1d, GenHMM1d, genlogis, geoTS, GiNA, gmDatabase, gpmap, hdlm, HMMcopula, hzar, idmTPreg, IDSpatialStats, iIneq, integIRTy, kcpRS, LEANR, LipidMS, localgauss, MAVTgsa, mbclusterwise, MEGENA, MineICA, missForest, MixedIndTests, MixRF, MonoInc, MoonlightR, mSimCC, multicon, mutSignatures, PAGWAS, penDvine, perspectev, PortfolioAnalytics, pwrEWAS, ramr, ramsvm, RegParallel, REPTILE, RGBM, Rlda, rlfsm, Rlof, RootsExtremaInflections, RPPASPACE, s4vd, SCAN.UPC, scRNAtools, sdcTarget, SDDE, SEA, selfingTree, SeqKat, sglOptim, simMP, SIMMS, SISIR, skewMLRM, sms, sRDA, sta, survSNP, TPEA, turboEM, unbalanced, vtpnet, weightQuant, yaConsensus
BayesARIMAX, demography, dendrometeR, dhReg, DIMORA, Dowd, ECTTDNN, EMDANNhybrid, expsmooth, fma, forecastHybrid, forecTheta, fpp, ftsa, garma, hts, ilc, MAPA, Mcomp, nnfor, portes, Rlgt, Rssa, StMoMo, thief, ZRA
AnDE, BayesTwin, CTTinShiny, diverse, easyPSID, epiDisplay, pkr, rsubgroup, separationplot, shapefiles, UScensus2000cdp, UScensus2000tract, UScensus2010, vegdata
BayesGESM, BayesSAE, BiSeq, brnn, clusterSEs, CUB, detect, DirichletReg, earth, FastCUB, games, gmnl, Hmisc, kaps, npsf, plmm, plotmo, quint, Rchoice, rdd, SemiCompRisks, SGB, sharx, simplexreg, smbinning, spNNGP, ssym, StratSel, threg, thregI, zoib
AlpsNMR, dhReg, doFuture, furrr, future.apply, future.batchtools, future.callr, SCtools, spatialwarnings, tidyqwi
foreSIGHT, GAabbreviate, gawdis, GWAS.BAYES, mcga, recmap, Rothermel, SPIGA
CausalGAM, fasi, GAMens, LSC, MapGAM, mtsdi, ProDenICA, SuperLearner
acid, binequality, BSagri, chicane, gamlss.add, gamlss.cens, gamlss.countKinf, gamlss.foreach, gamlss.inf, gamlss.lasso, gamlss.mx, gamlss.nl, gamlss.spatial, gamlss.tr, ImputeRobust, metamicrobiomeR, semsfa, ZIBseq
acid, binequality, gamlss, gamlss.add, gamlss.cens, gamlss.countKinf, gamlss.demo, gamlss.inf, gamlss.mx, gamlss.spatial, gamlss.tr, gamlssbssn
BigTSP, ecospat, gbm2sas, mma, personalized
genetics, iCluster, ImportExport, iPAC, mixexp, nonparaeff, REREFACT, rsurfer, ssize
aSPU, diffdepprop, DTComPair, GEEaSPU, JGEE, MargCond, mmm2, saws
convevol, iteRates, OUwie, surface, TreeSim, windex
BinOrdNonNor, OrdNor, PoisBinOrd, PoisBinOrdNonNor, PoisBinOrdNor
alphashape3d, caRamel, contoureR, CoopGame, ddalpha, EDFIR, FD, fdaPDE, gensphere, Maeswrap, modQR, mvmesh, nonparaeff, RadOnc
CA3variants, CAvariants, EnhancedVolcano, FactoClass, func2vis, PCAtools, SetMethods
epistasis, hglasso, INDEED, lassoscore, MInt, regmed, scLink, SelvarMix, sparseBC, Tsphere
AdapEnetClass, adapt4pv, AHM, bapred, BigTSP, BioMark, CBPS, cosso, ctmle, DTRlearn2, elasso, ensr, EstHer, fcd, gamlss.lasso, GlarmaVarSel, glmnetcr, glmSparseNet, glmvsd, Grace, GRridge, hdlm, HiCfeat, HIMA, HSDiC, IGG, InvariantCausalPrediction, ipflasso, islasso, KLexp, lassoscore, Lavash, mcen, metagenomeSeq, MetGen, mmabig, MNS, mpath, MRFcov, MTPS, MultiVarSel, PAS, personalized, ProSGPV, prototest, qut, RLassoCox, roccv, RVtests, selectiveInference, sharpPen, SIMMS, SPSP, tmle, trena, TSGSIS
confreq, CTD, OPDOE, rain, RankProd, RcppBigIntAlgos, Rfractran, rknn, Rmpfr
flexmixNL, logmult, multgee, prefmod, StMoMo, vcdExtra, VFP
bayess, cellVolumeDist, COHCAP, corkscrew, DandEFA, DensParcorr, difconet, EBSeq, GSCA, HD2013SGI, highSCREEN, Hiiragi2013, iCheck, iCluster, made4, massiR, MBttest, MDplot, MetabolAnalyze, Meth27QC, MethTargetedNGS, mgsa, mlma, mma, MOQA, muma, NBBttest, NestLink, PRISMA, RCA, ReorderCluster, RnBeads, SCINA, swamp, switchBox, tRanslatome
CA3variants, CAvariants, climwin, CNVrd2, egg, erccdashboard, GOplot, h5vc, HH, IPDfromKM, metacart, metaEnsembleR, MinEDfind, NIRStat, nonmem2R, pathVar, PPtreeViz, primerTree, ProbBayes, RATest, RnBeads, rorutadis, sangeranalyseR, spc4sts
covEB, evmix, metacor, palinsol, QRM, rGammaGamma, tggd
ASMap, Biocomb, ClusterR, collpcm, crossdes, dice, DisHet, fCI, GameTheory, genetics, GESTr, GhostKnockoff, GSM, Hiiragi2013, HUM, iCARE, iCluster, IDPSurvival, integr, interferenceCI, iteRates, JASPAR, MasterBayes, MBttest, MDplot, MetabolAnalyze, MineICA, modMax, muma, NBBttest, NonParRolCor, ordinalpattern, orQA, PairViz, REQS, rmpw, RolWinMulCor, rpsychi, RTCA, rvHPDT, sensory, splineTimeR, SummaryLasso, trioGxE, Ultimixt
BOG, CellNOptR, GABi, GeneGA, neuroim, orderbook
ASPBay, audiolyzR, beadarray, BoutrosLab.plotting.general, ChimpHumanBrainData, somplot, supraHex, tiger
abctools, acid, anesrake, cg, colorscience, EstCRM, fastLiquidAssociation, FRESA.CAD, FunCluster, funModeling, greport, greyzoneSurv, gset, iCARE, ImportExport, LifeHist, mapReasy, MineICA, monobin, nlmeVPC, nonparaeff, pch, phenoTest, poolVIM, prLogistic, pse, QHScrnomo, RcmdrPlugin.Export, RHMS, RM.weights, rms, separationplot, testforDEP, univOutl, UsingR, weights, WRSS
BiocPkgTools, d3plus, d3po, dragulaR, imageviewer, widgetframe
BrowserViz, Rfacebook, Rlinkedin, webdeveloper, webglobe
censusr, ClusterJudge, couchDB, CytobankAPI, eFRED, epxToR, hkex.api, httping, hystReet, instaR, kofdata, LightningR, micar, nitrcbot, OmaDB, opalr, openblender, pogos, PSICQUIC, Rcolombos, repello, request, resourcer, Rfacebook, Rga4gh, rgdax, RGoogleAnalytics, RGoogleAnalyticsPremium, RGoogleFit, rHealthDataGov, Rlabkey, Rlinkedin, rockr, Rodam, RSauceLabs, seleniumPipes, SmarterPoland, TMDb, tumblR, WikipediaR, worms
ICSNP, ICSOutlier, ICSShiny, ICtest, OjaNP
archeofrag, AurieLSHGaussian, bayesloglin, bc3net, BioNetStat, BiRewire, BNSL, bnstruct, Boptbd, brainGraph, c3net, caOmicsV, causaloptim, cccd, centiserve, cglasso, clickstream, conos, cooptrees, corclass, coreCT, CoRegNet, corkscrew, covEB, CTD, CytoTree, DART, dc3net, dcGOR, Diderot, DiffCorr, diffee, dils, disparityfilter, dnet, DrInsight, DynComm, ebdbNet, editrules, epihet, epistasis, ESEA, FamAgg, fanovaGraph, fasjem, fastclime, FisHiCal, flare, Fletcher2013b, FlowSOM, func2vis, G1DBN, GADAG, gdistance, GeneAnswers, genlasso, GNAR, gRapfa, graphkernels, GraphPAC, gremes, GSAR, hglasso, hipathia, HyperG, iDINGO, igraphtosonia, InteractiveIGraph, jeek, JGL, JointNets, LEANR, leidenAlg, linkcomm, LncPath, locits, LPKsample, manet, MEGENA, MetaLandSim, micropan, MineICA, MNS, modMax, morph, mRMRe, multichull, ndexr, NEpiC, netassoc, netbiov, netboxr, NetPathMiner, NetSAM, NetSwan, oposSOM, optbdmaeAT, optrcdmaeAT, optrees, OutrankingTools, PAGI, pagoda2, pairkat, PANR, parsec, Path2PPI, pcSteiner, PhaseTypeR, Pi, postHoc, PoTRA, PPInfer, predictionet, qtlnet, ragt2ridges, RCA, regmed, rEMM, RNetLogo, RNewsflow, robin, rsemmed, rTRM, RWBP, sand, SANTA, SARP.compo, SDDE, SEMgraph, sglasso, ShapePattern, shp2graph, simule, sincell, sindyr, SOMbrero, soptdmaeA, splineTimeR, SteinerNet, SubpathwayGMir, SubpathwayLNCE, SVN, synRNASeqNet, threejs, timeordered, tlsh, tnet, VertexSort, wfg
ALS, GRridge, imp4p, IsoGene, isoSurv, MinEDfind, uniah
BayesBP, bumphunter, doMC, doMPI, doParallel, doRedis, doSNOW, GA, GAparsimony, hdlm, itertools, MonoInc, parboost, RegParallel, RootsExtremaInflections, RPPASPACE, RQEntangle, SDDE, sms
ICtest, isva, MineICA, ssaBSS, tensorBSS, tsBSS
BrowserViz, ClusterJudge, Cogito, condusco, eFRED, GoogleKnowledgeGraphR, hystReet, instaR, jSonarR, kofdata, nitrcbot, openblender, rgdax, RGoogleAnalyticsPremium, RGoogleFit, rHealthDataGov, Rlabkey, RSauceLabs, RWildbook, seleniumPipes, timeseriesdb, TMDb, webglobe
CVST, DRR, DTRlearn2, kappalab, kebabs, kfda, KPC, PPInfer, svmpath
BGmix, bioDist, CHsharp, DeMAND, DeMixT, FCGR, gammSlice, gb, GenKern, GoFKernel, ICE, IsoCI, KCsmart, LiebermanAidenHiC2009, mpm, mpmi, MPV, PlotContour, qualV, sharpData, sharpPen, TPmsm
ElstonStewart, FamAgg, Familias, GESE, MasterBayes, pedgene
basecallQC, BiocSklearn, BoneProfileR, Data2LD, DeMixT, docknitr, EasyHTMLReport, FAMetA, frequency, frequencyConnectedness, Guitar, LabRS, multiverse, NatureSounds, PopGenReport, PSIMEX, qra, ReportingTools, reverseR, rmdHelpers, ROCpAI, rrecsys, sangeranalyseR, spThin, svSweave, tab, tangram, tufterhandout
BayesESS, bmscstan, covEB, EpiILM, hyper.fit
AdapEnetClass, aml, changepointsVar, cumSeg, ebreg, elasticnet, FeaLect, gamlss.lasso, gwrr, monomvn, mrMLM, mrMLM.GUI, multiPIM, OTRselect, PAGWAS, pfa, qut, RAEN, relaxo, rRAP, RXshrink, scalreg, sealasso, sisVIVE, spikeslab, SPSP, TSMCP
abcdeFBA, abd, adaptTest, addScales, agsemisc, ASMap, assist, backtest, barcode, BayesGPfit, bayespref, BayesSAE, bc3net, bgmm, biclust, Blendstat, BoutrosLab.plotting.general, BRAIN, Brundle, BSDA, bsem, cardidates, caret, cem, clippda, ClusterJudge, coalescentMCMC, ConvergenceConcepts, Cubist, cvTools, cwhmisc, DAAG, DCL, deseasonalize, designmatch, Devore7, DoseFinding, EBarrays, eHOF, ELT, EngrExpt, equivalence, erboost, EstCRM, evidence, factorQR, fastclime, FAwR, FitAR, flare, flexclust, flexmix, flowViz, gammSlice, geneplotter, generalCorr, geoelectrics, growthrates, gsbDesign, hett, HH, HilbertVis, Hmisc, hotspots, hyperSpec, ICEinfer, iClick, iCluster, iGasso, ILS, InvasionCorrection, irtProb, kergp, kmlShape, kwb.hantush, kzs, latticeExtra, lfstat, loa, LocalControlStrategy, maCorrPlot, Maeswrap, MALDIrppa, mapStats, MCPMod, memisc, mirt, mixexp, mixOmics, mixture, mleur, MM2S, MPV, mritc, msme, msqc1, nFactors, nlmeODE, OLScurve, optiscale, orderbook, PairedData, paleoMAS, PASWR, PASWR2, pbo, pems.utils, pencopulaCond, pendensity, penDvine, phenmod, PKreport, plink, portfolio, ProTrackR, qra, R330, randomLCA, rasterVis, RcmdrPlugin.plotByGroup, RcmdrPlugin.temis, REPPlab, Ringo, Rmisc, rms, robfilter, robustsae, RSA, RxCEcolInf, SALTSampler, SEL, semPLS, simFrame, simPop, SLGI, solaR, sommer, spectral, spuRs, statnetWeb, stripless, survSNP, svdvisual, SwathXtend, sybil, tactile, TDboost, tdr, TestingSimilarity, unmarked, vegan, VHDClassification, vwr, waterfall, Watersheds, wskm, xpose4
BoutrosLab.plotting.general, ClusterJudge, DCL, ELT, HH, pencopulaCond, qra, solaR, statnetWeb, vwr, wskm
blavaan, coefficientalpha, CoTiMA, eatRep, EffectLiteR, eqs2lavaan, equaltestMI, fSRM, influence.SEM, lavaan.survey, MedSurvey, merDeriv, pathmodelfit, profileR, RAMpath, regsem, Replication, RMediation, RSA, rsem, SEMgraph, semTools, simsem, WebPower
gde, leaflet.esri, leaflet.extras, leaflet.extras2, leaftime, mgwrsar, wallace
ALSM, BACprior, BCEE, bestglm, BMA, DEMOVA, FitAR, glmulti, iterativeBMA, iterativeBMAsurv, Kpart, networkBMA, pampe, R330, regclass, speff2trial
acebayes, ATmet, mtk, netgen, spsh, tuneRanger
BCE, CVEK, DeconRNASeq, LIM, MLCIRTwithin, MultiLCIRT, ragtop, treedater
afex, agRee, aods3, arm, bapred, BClustLonG, blme, cAIC4, carcass, cgam, CLME, dfmeta, eirm, gamm4, glmertree, GLMMRR, gtheory, HelpersMG, influence.ME, jlctree, joineRmeta, JointModel, LMERConvenienceFunctions, lmerTest, longpower, macc, MargCond, marked, MEMSS, merDeriv, merTools, Metatron, mixAK, MixRF, mlma, mlmRev, MultisiteMediation, mumm, mvMISE, panelr, pbkrtest, pedigreemm, predictmeans, prLogistic, r2mlm, robustBLME, robustlmm, sae, simr, SPCDAnalyze, structree, swissMrP, WebPower, WeMix
AER, cjoint, dcv, erer, fpp, frontier, ivpack, ivregEX, mfx, micEconAids, orcutt, PeerPerformance, rdd, SAEval, systemfit, UnitStat, vars
abc, antiProfiles, bumphunter, cellHTS2, DEsubs, ELT, EMD, genArise, hierSDR, mcll, metaseqR2, nlts, OLIN, SimpleTable, vulcan
AcrossTic, Aoptbdtvc, ata, cabootcrs, clime, Compind, CSclone, EDFIR, EpistemicGameTheory, ioanalysis, irr, jeek, JointNets, kappalab, linprog, lpNet, mcclust, modQR, mpcv, nonparaeff, PHInfiniteEstimates, RcmdrPlugin.sampling, simule, StatMatch
additiveDEA, adea, Benchmarking, DIconvex, DJL, eMLEloglin, GameTheory, GameTheoryAllocation, MultiplierDEA, safeBinaryRegression
catSurv, GPCMlasso, IMTest, infutil, integIRTy, irtoys, kequate, PCMRS, PerFit, subscore, UPCM
dataPreparation, HEDA, hystReet, MetFns, orgR, pkdata, radiant.data, RGoogleAnalytics, RGoogleAnalyticsPremium, seawaveQ, tidyquant, TimeProjection, TreeDep, tuneRanger, weatherr
freegroup, lmfor, LongCART, sdcTarget, SNSequate, spselect
AlpsNMR, analysisPipelines, banter, bsem, BubbleTree, cchsflow, CellBench, cfDNAPro, chronicle, ClusterBootstrap, CollapseLevels, d3plus, d3po, dabestr, DynNom, efreadr, ENMeval, escalation, eurocordexr, ExpAnalysis3d, flatr, forestplot, freegroup, gbp, GenomicDataCommons, gitear, Guitar, gwdegree, hyper2, imager, ISAnalytics, lacrmr, lorentz, microbiomeExplorer, mvp, nlmeVPC, nmm, packagetrackr, peruse, pmxTools, portfolio.optimization, pubh, Q7, radiant.data, ReDaMoR, RLumCarlo, rtables, samplesize4surveys, seleniumPipes, SimEngine, skm, tangram, TeachingSampling, tidycharts, TKCat, TPP, visae, WaMaSim
ausplotsR, climatol, etasFLP, FeedbackTS, M3, oceanmap
ausplotsR, climatol, cope, CSTools, ETAS, FeedbackTS, fossil, HBSTM, letsR, M3, mapdata, mapproj, mrbsizeR, muRL, nhdR, NightDay, oceanmap, paleobioDB, phytools, PWFSLSmoke, ramps, RNCEP, s2dv, s2dverification, wikilake
animalEKF, cleangeo, DeducerSpatial, GISTools, GmAMisc, GWmodel, itcSegment, KappaV, mapStats, micromap, monographaR, pycno, rKIN, StreamMetabolism, swissMrP, UScensus2000cdp, UScensus2000tract, UScensus2010, Watersheds
EasyHTMLReport, exsic, metapone, reverseR, SOMbrero, stmgui
bgsmtr, DeMixT, flexrsurv, freqdom, HMMcopula, HRM, Kurt, mro, pom, snpReady, StructureMC
antiProfiles, aSPU, bahc, BayesTwin, BRISC, BSW, Clomial, DEqMS, DisHet, ExCluster, FastHCS, FastPCS, FastRCS, GAD, GGPA, InfiniumPurify, localgauss, LS2Wstat, MatrixGenerics, methylumi, POMaSPU, r2dRue, RAC, Rediscover, RnBeads, shinyMethyl, SICtools, sindyr, splitFeas, STROMA4, StructFDR, ttScreening, wateRmelon
censReg, games, gmnl, hermite, IntLik, lmmot, mlogitBMA, mvProbit, nmm, oglmx, pglm, PrevMap, Rchoice, rumidas, sampleSelection, ssfa, truncreg
betaboost, expectreg, FDboost, gamboostLSS, gfboost, InvariantCausalPrediction, parboost, tbm
AnnuityRIR, CopulaREMADA, CPP, OSCV, stratifyR
baggingbwsel, BiSEp, clustvarsel, CNprep, cqn, EBcoexpress, fdm2id, FEAST, FitUltD, GESTr, HDoutliers, HyperG, IntNMF, iPath, LifeTables, LPKsample, manet, MBCbook, mclustAddons, MetabolAnalyze, MineICA, msos, netresponse, prabclus, probout, puma, robustDA, SC.MEB, SCATE, Simpsons, SNPMClust, SpeCond, SQN, SummarizedBenchmark, VAExprs
adaptsmoFMRI, bacr, BayesESS, bayespref, brxx, CoinMinD, DMRMark, gset, hzar, manet, MBSP, NetworkChange, NHMM, pCalibrate, PhViD, PICBayes, robustsae, RSGHB, RxCEcolInf, SimpleTable, twl, uskewFactors
GSED, GWAS.BAYES, gWidgets2tcltk, SamplingStrata, SVN
diagmeta, metasens, miniMeta, MultiPhen, netmeta, nmarank
bayesmeta, BLMA, metaforest, metawho, SAMURAI
additive, autocart, bamlss, bgeva, cenGAM, coenoflex, CONCUR, coxed, denseFLMM, dsm, eHOF, fcr, fda.usc, FlexGAM, gaga, gamlss.add, gamlss.spatial, gamm4, gammSlice, GJRM, gvcm.cat, ibr, ismev, itsadug, KnowBR, labdsv, MAPLES, mgcViz, mombf, MPINet, multipleNCC, multiridge, NIRStat, nlshelper, nontarget, ordPens, PanJen, personalized, qgam, R2BayesX, robustgam, scam, semsfa, sparseFLMM, STAR, structree, sva, trioGxE, TSVC, TTS, tvem, vagam
accelmissing, CALIBERrfimpute, HardyWeinberg, ImputeRobust, miceadds, micemd, Replication, RfEmpImp, TestDataImputation
cellVolumeDist, DIMORA, ELISAtools, micEconCES, onls, photosynthesis, plantecowrap, propagate, PUPAIM, qpcR, Ritc, RpeakChrom, tumgr
CopyDetect, lordif, mirtCAT, NominalLogisticBiplot, OrdinalLogisticBiplot, PerFit
brainR, GENEAsphere, kml3d, longitudinalData, mritc, ptinpoly, VecStatGraphs3D
bgsmtr, CNLTreg, FRESA.CAD, IQCC, maxLik, polywog
covLCA, glm.predict, mpbart, nopp, PHInfiniteEstimates, Ravages
llama, mlrCPO, mlrMBO, OOBCurve, RBPcurve, SIAMCAT, spFSR, unbalanced
GenericML, mlr3cluster, mlr3db, mlr3fselect, mlr3learners, mlr3proba, mlr3spatial, mlr3tuning, mlr3verse, NADIA
cotram, mlt.docreg, tbm, tram, tramME, trtf
bayess, blatent, EXRQ, FAMT, MaXact, mdsdt, PAGWAS, PEACH, PLordprob, qtlhot, quantreg.nonpar, siar, StratSel, Sunder
CSclone, earlywarnings, emg, ICSOutlier, irtProb, LIHNPSD, mixedsde, spfrontier
ATmet, CEoptim, elect, hysteresis, ltm, NEff, NHMM, RM2, score, trioGxE, WPC
BSagri, curvecomp, HH, ILS, MAVTgsa, medflex, mutossGUI, nparcomp, postHoc, RcmdrPlugin.coin, tukeytrend
adaptsmoFMRI, AdMit, AFheritability, AnaCoDa, anMC, asd, aSPU, AssocTests, AssotesteR, BACprior, BAEssd, BayesBEKK, Bayesiangammareg, bayeslongitudinal, BayesPieceHazSelect, BayesPiecewiseICAR, BayesVarSel, BAYSTAR, bgmm, bgsmtr, BinNonNor, BinNor, Bmix, bnormnlr, BNPTSclust, bpp, BSPADATA, bulletcp, calibrator, CAMAN, caper, CDM, CGEN, COMBAT, CommonMean.Copula, condMVNorm, COST, covEB, CPMCGLM, dawai, depend.truncation, distrEllipse, DMRMark, dmt, DoseFinding, dotgen, DunnettTests, edrGraphicalTools, EMC, emulator, FactMixtAnalysis, factorial2x2, FAmle, faoutlier, fgof, ForImp, FPDclustering, freqdom, freqdom.fda, freqparcoord, FSTpackage, genetics, GenForImp, GenOrd, gfboost, GGMridge, GGMselect, GLMaSPU, glmm, GLSME, growthrate, GRridge, gset, hbim, HCmodelSets, hglasso, hhsmm, highmean, HMMcopula, holland, HPbayes, hsem, hsmm, ICS, ICSNP, imputeYn, IndepTest, INPower, JPEN, kcirt, lcmm, LGEWIS, lmec, logcondiscr, LSMonteCarlo, mada, MAMS, MBCbook, mc2d, MCPMod, MCPModPack, mdhglm, mediation, MetabolAnalyze, mgarchBEKK, mhsmm, miscFuncs, MIXFIM, mixsmsn, MNS, Modalclust, mombf, mpe, MRsurv, multcomp, MultiGHQuad, multinomRob, MultiOrd, multxpert, muma, mutoss, mvnTest, mvProbit, NegBinBetaBinreg, netgen, nmarank, nparcomp, optimStrat, OptInterim, ordinalpattern, OrdNor, PairedData, parallelMCMCcombine, party, partykit, PCMRS, PGEE, pGMGM, phase1RMD, plgp, PoisBinNonNor, PoisBinOrd, PoisBinOrdNor, PoisNor, powerCompRisk, powerGWASinteraction, psbcGroup, qcr, QRM, RAD, radiant.design, reglogit, regtools, RidgeFusion, robustsae, rPowerSampleSize, rtip, rwc, RxCEcolInf, samplesizelogisticcasecontrol, sasLM, SCRSELECT, sdetorus, selectiongain, SEMModComp, sgPLS, simboot, SimDissolution, SNPmaxsel, sodavis, sp23design, spatialnbda, spatialprobit, spfrontier, sRDA, sscor, SSsimple, Stem, symmoments, TAR, texmex, tilting, timedeppar, tlmec, tmvtnorm, TTmoment, uncertainty, uskewFactors, vagam, wbsts, weightedScores, yuima
eurocordexr, M3, meteoForecast, RSIP, wux
collpcm, dnr, EloRating, ergm, ergm.count, ergm.ego, ergm.rank, ergm.userterms, GGPA, hergm, ITNr, latentnet, lvm4net, mlergm, mpa, ndtv, networkDynamic, networkDynamicData, networksis, RHMS, sna, statnetWeb, tergm, tsna, VBLPCM, xergm.common
EpiModel, ndtv, networkDynamicData, tergm, tsna
BayesNSGP, bcgam, nimbleAPT, nimbleCarbon, nimbleEcology, nimbleSCR, nimbleSMC
alphaOutlier, BayesGOF, GNE, mbrglm, ph2bye, SPmlficmcm
abd, AdaptFitOS, ADDT, assist, BART, BIOdry, cAIC4, cati, CorrMixed, covBM, CpGassoc, curatedCRCData, DendroSync, depmixS4, far, FCGR, fitplc, FlexParamCurve, FlowSorted.Blood.EPIC, gamlss, gma, goric, JM, JMbayes, JMbayes2, joineRML, JoSAE, JSM, lcc, likelihood, lmeSplines, lmfor, LMMstar, LongCART, longpower, longRPart2, LoopAnalyst, macc, mbest, meboot, MethodCompare, mgcv, multilevel, nlmeODE, nlmm, nlshelper, OpenStats, orQA, pheno, picante, plmm, predictmeans, ProfileLikelihood, psychometric, r2mlm, ramps, REEMtree, RepeatedHighDim, scdhlm, sitar, spatstat.core, SPCDAnalyze, splinetree, SPREDA, StructFDR, TapeR, winRatioAnalysis, ZIBseq
CCpop, CNORfuzzy, corHMM, episplineDensity, GRCdata, hisse, kergp, LinkedGASP, MaxPro, NMMIPW, OUwie, PAIRADISE, parma, pgsc, soilhypfit, WRSS
BullsEyeR, manifestoR, R.temis, RcmdrPlugin.temis, tm
CancerSubtypes, fabisearch, InterSIM, IntNMF, musicatk, MutationalPatterns, signeR, SomaticSignatures, SparseSignatures
abc, BarcodingR, BART, bcROCsurface, CBPS, dave, depmixS4, elect, epiDisplay, fdm2id, gamlss.add, gamlss.mx, HardyWeinberg, HIest, HydeNet, introgress, LOGICOIL, ModTools, nftbart, partialOR, pocrm, sodavis, SQB, TBFmultinomial
ALS, archetypes, simest, SuperLearner, TOAST
CovSel, DepthProc, generalCorr, rddtools, semsfa, sharpPen, stam
alabama, bayesDccGarch, bayesmeta, BiProbitPartial, bnormnlr, catIrt, CBPS, CompDist, CompLognormal, compound.Cox, copCAR, DIMORA, DOBAD, dsm, embryogrowth, fgof, fracprolif, ghyp, glmtoolbox, HPbayes, hsem, lcpm, lmeNB, ltbayes, M3Drop, mederrRank, mgpd, mipfp, NMMIPW, nmw, OneStep, phenology, QRM, rxSeq, SemiMarkov, sgt, ssym, tbd, turboEM, tvgarch, wnl
ClassComparison, ClassDiscovery, Modeler, PreProcess, TailRank
CoTiMA, ctsemOMX, EasyMx, gwsem, ifaTools, lvnet, metaSEM, semtree, tidySEM, umx
AntibodyTiters, BayesBP, sangeranalyseR, SwathXtend, tablaxlsx, TarSeqQC, word.alignment, xlsx2dfs
BiplotML, BTYD, eirm, embryogrowth, LIHNPSD, macc, midasr, monmlp, NormalGamma, parfm, phenology, sgt, surrosurv
BHMSMAfMRI, brainR, fslr, mritc, neurobase, sublime
BayesGOF, ddst, ECGofTestDx, gaussquad, HellCor, lactcurves, LaplaceDeconv, LPTime, nlsem, uniftest, valuer
additive, baguette, bayesian, bayesmodels, discrim, garchmodels, plsmod, poissonreg, rules
BMT, factoptd, frmqa, hpcwld, iteRates, MM, NSM3, rTableICC, stratvns
dtree, GetR, MAclinical, moreparty, parboost, varImp
ATR, dtree, evtree, ggparty, glmertree, ICcforest, lagsarlmtree, model4you, palmtree, PPtreeViz, psychotree, quint, smbinning, trtf, vcrpart
A3, BRISC, detect, frequencyConnectedness, opticut, SamplingStrata, spectral, Taxonstand
ccaPP, DetMCD, diffee, gfboost, jeek, JointNets, muma, rainbow, simule, sscor, Yamm
dvir, forrel, ibdsim2, paramlink2, pedbuildr, pedprobr, pedsuite, ribd, segregatr, verbalisr
DIFtree, GRridge, multiPIM, PACLasso, structree, subtype, uplift
apex, MonoPhy, MSCquartets, sangeranalyseR, windex
Canopy, KOGMWU, MM2S, survtype, yaConsensus
ggspectra, photobiologyFilters, photobiologyInOut, photobiologyLamps, photobiologyLEDs, photobiologyPlants, photobiologySensors, photobiologySun, photobiologyWavebands
Claddis, convevol, MonoPhy, mvMORPH, treestartr
clusterSEs, cquad, pdR, pglm, SpatialRegimes
fdaPDE, ioanalysis, OceanView, plot3Drgl, qtlc, spsi
cdparcoord, Eagle, ExpAnalysis3d, GEOexplorer, heatmaply, hypercube, iCellR, MatrixQCvis, multichull, optimos.prime, personalized, ProjectManagement, RCAS, sangeranalyseR, TPLSr
audiolyzR, Autoplotprotein, cytoDiv, DIFtree, dupiR, epade, GMRP, iCARE, idiogram, interfr, KnowBR, lba, MetFns, mutossGUI, optpart, plotmo, plotprotein, PSIMEX, RAC, randomizeR, rasterImage, SeqFeatR, shuffleCI, simplexreg, smacof, TBFmultinomial, tRanslatome, TSVC
BioMark, dbstats, dmm, fdm2id, lmdme, lspls, MAIT, monomvn, muma, obliqueRF, plsVarSel, RcmdrPlugin.NMBU, robCompositions, RVtests, SQB
abctools, Autoplotprotein, bcpa, blink, bmk, boottol, BSGS, BubbleTree, coreCT, corona, CPMCGLM, DataLoader, dfmeta, DoTC, EurosarcBayes, evolqg, eyeTrackR, fastCorrDiff, FFdownload, Fgmutils, fishmove, freegroup, gpmap, HRM, intansv, kgc, klsh, lcpm, MIMOSA, MineICA, MScombine, OmaDB, ONETr, PdPDB, plotprotein, plotSEMM, PSICQUIC, pxR, rcbalance, rcbsubset, RDSTK, RGBM, rgdax, Rmisc, RnBeads, RSAGA, RStorm, rtip, seawaveQ, selfea, SICtools, sinaplot, SPCDAnalyze, SSrat, surveybootstrap, TarSeqQC, timeordered, tlsh, toolmaRk, unitedR, winRatioAnalysis, wordmatch, worms, wpp2015
DandEFA, FactorCopula, klausuR, ltm, mdsdt
adhoc, FuzzySTs, gaussquad, Kurt, kzft, lactcurves, LaplaceDeconv, LPBkg, orthopolynom, rationalfun
arse, celestial, colorscience, CommonMean.Copula, conicfit, crrcbcv, cryst, episplineDensity, GORCure, ICGOR, Lavash, MetFns, mousetrack, NonParRolCor, nowcastDFM, pasadr, ReDirection, RolWinMulCor, RpeakChrom, RVCompare, shinyKGode, smfishHmrf, spftir, spselect, spsh, TapeR, TargetScore, TDD
DistatisR, ExPosition, InPosition, TExPosition, TInPosition
bimixt, FRESA.CAD, multiridge, packMBPLSDA, RatingScaleReduction, RcmdrPlugin.ROC, roccv, ROCpsych, switchBox
Cprob, pec, Publish, SmoothHazard, survcomp, survxai, wally
dataPreparation, DSI, eatRep, lmQCM, RUVIIIC
gsubfn, nls2, prioritizr, SparseFactorAnalysis, sqldf
cba, diverse, dtw, dtwclust, kst, recommenderlab, rEMM, StatMatch, stream, TSdist
accelmissing, BSGS, BSPADATA, emIRT, IGG, maczic, robustsae, wnominate
AgreementInterval, BinNor, coMET, Compind, DeducerPlugInScaling, FactorAssumptions, fCI, GAabbreviate, generalCorr, HDMD, MOQA, multicon, MultiOrd, MultisiteMediation, nonparaeff, PoisBinOrdNor, random.polychor.pa, REREFACT, SSDforR, whomds
csurvey, disk.frame, ggraptR, scAlign, stratvns, ZIprop
ASMap, ctl, eqtl, MPR.genotyping, mQTL, QTL.gCIMapping, QTL.gCIMapping.GUI, qtlhot, qtlnet, trigger, wgaim, xoi
AdapEnetClass, AHM, ANOVAreplication, Benchmarking, bigsplines, BSW, CMLS, cosso, ecap, FlowSorted.Blood.EPIC, ForecastCombinations, gtop, HSDiC, imputeYn, iterLap, kappalab, kinship2, methylclock, MonoPoly, normalize450K, ordPens, sbw, SEL, ShapeChange, sharpData, SPIn, svmplus, TNBC.CMS, vottrans, wSVM
acp, FinancialInstrument, stocks, tidyquant, treasuryTR
abc, AdjBQR, alphaOutlier, caROC, cqn, cqrReg, EILA, EXRQ, ForecastCombinations, genpathmox, lss2, midasr, pfa, pheno, plaqr, QRegVCM, qrjoint, quantreg.nonpar, quantregGrowth, quantsmooth, Rearrangement, riv, RobPer, rqPen, rrat, SIM, SpatialRegimes, turboEM, vdg, weightQuant
arc, aroma.affymetrix, aroma.cn, aroma.core, calmate, DEGraph, DEWSeq, GSED, HyPhy, PubBias, readmoRe, tmle.npvi
BHTSpack, DMRforPairs, ELISAtools, FFD, HTMLUtils, permPATH, RcmdrPlugin.EACSPIR, STAR
CCTpack, eivtools, hbbr, HETOP, IUPS, miscF, simmr
AlphaSimR, bggAnalytics, blatent, BLRPM, ConfigParser, DSI, DSLite, gpboost, HiCBricks, lightgbm, LightningR, metagene, metagene2, resourcer, SeqExpMatch, ShinyImage, similaRpeak, superml, tangram
bioCancer, radiant, radiant.basics, radiant.design, radiant.model, radiant.multivariate
alookr, AUCRF, bartMachine, BigTSP, ChIC.data, conformalClassification, EPX, evaluomeR, interpretR, JQL, MAVTgsa, missForest, MixRF, ModelMap, partitionMap, quantregForest, regclass, rfVarImpOOB, rfviz, SpatialML, spikeslab, trimTrees, UBL, varSelRF, vtype
causalweight, Iscores, metaforest, PKLMtest, RfEmpImp, tuneRanger
BRISC, celestial, RapidPolygonLookup, RWBP, saasCNV, spNNGP
angstroms, APAtree, CENFA, cffdrs, chronosphere, ConR, coreCT, ctmcmove, diffeR, dismo, DMMF, downscale, dtwSat, ecochange, elsa, ENMTools, envirem, ExtractTrainData, GapAnalysis, gdistance, geotopbricks, geoTS, gfcanalysis, gimms, GInSARCorW, glacierSMBM, grec, hsdar, intkrige, isocat, itcSegment, kissmig, letsR, lidR, lulcc, mapmisc, maxlike, meteoForecast, ModelMap, modiscloud, move, NetLogoR, npphen, oceanmap, Orcs, osc, paleobioDB, ParallelDSM, PatternClass, PersomicsArray, phyloclim, PrevMap, prioritizr, prioritizrdata, qrencoder, rangeBuilder, raptr, rasterdiv, rasterDT, rasterList, rbgm, rdwplus, ReadDIM, redlistr, remote, RGISTools, RSIP, rwc, sampSurf, satellite, ShapeSelectForest, SiMRiv, spdynmod, spMaps, sta, TOC, usdm, virtualspecies, zoon
RcmdrPlugin.coin, RcmdrPlugin.depthTools, RcmdrPlugin.EBM, RcmdrPlugin.EcoVirtual, RcmdrPlugin.Export, RcmdrPlugin.KMggplot2, RcmdrPlugin.MPAStats, RcmdrPlugin.plotByGroup, RcmdrPlugin.pointG, RcmdrPlugin.ROC, RcmdrPlugin.steepness, RcmdrPlugin.sutteForecastR
ASMap, bayespref, beadarrayFilter, caROC, cellHTS2, COHCAP, consensus, contourPlot, corkscrew, DeducerText, DEXSeq, FieldSim, GeneAnswers, GISTools, GOplot, GSCA, HD2013SGI, Hiiragi2013, HTqPCR, IdeoViz, introgress, kcpRS, linkcomm, LSC, made4, MAPA, MDplot, MDSGUI, metagenomeSeq, micromap, MineICA, MonoPhy, mvtsplot, NormqPCR, OUwie, pathRender, phenmod, profileR, PST, qdap, quantregForest, RcmdrPlugin.pointG, RFLPtools, Ringo, RTCA, separationplot, SpeCond, sSeq, ssviz, TrackReconstruction, wordcloud, XhybCasneuf
FisHiCal, GRENITS, MVB, ncdfFlow, networkBMA, PedCNV, robustgam
AffyCompatible, BaseSpaceR, CellNOptR, CHCN, couchDB, crn, DeepBlueR, factualR, fds, GeneAnswers, hkex.api, jSonarR, leerSIECyL, LightningR, LSPFP, MetaDBparse, nitrcbot, notifyR, ONETr, osmar, pullword, pumilioR, R4CouchDB, RapidoPGS, rbiouml, rbitcoinchartsapi, RblDataLicense, RDSTK, restimizeapi, rgdax, RGoogleFit, rHpcc, rLTP, RNaviCell, rneos, ropensecretsapi, RYoudaoTranslate, scrapeR, SPARQL, SRAdb, streamR, tumblR, UniProt.ws, zendeskR
efreadr, genomes, MicroDatosEs, MOQA, sim1000G
NMF, pkgmaker, recommenderlab, rrecsys, stream
deltaGseg, emme2, fpa, generalhoslem, MIMOSA, pedigree, phenModel, profileR, qrqc, rapportools, RcmdrPlugin.EACSPIR, SMFI5, ssviz, swa, wux
AFheritability, AurieLSHGaussian, BCellMA, clickstream, cummeRbund, diffeR, DIMORA, diverse, eirm, flowMap, gapmap, GSCA, GWAS.BAYES, ifaTools, infinitefactor, interlineaR, methylumi, mhtboot, MicroNiche, morph, netresponse, pgsc, pxR, sangeranalyseR, ScottKnottESD, seawaveQ, SpatialFloor, tmpm, toolmaRk, TriMatch, validateRS, wordmatch
BiocSklearn, CallEshotgun, Herper, mixKernel, rMIDAS
cffdrs, DeducerSpatial, diffeR, DMMF, ExtractTrainData, GADMTools, hsdar, intensity.analysis, landsat, M3, mapReasy, micromap, ModelMap, modiscloud, move, r2dRue, rangeBuilder, RSIP, SPODT, TOC, UScancer, waver
animalEKF, cleangeo, DivE, ecochange, GISTools, highriskzone, ibeemd, itcSegment, KappaV, pycno, spMaps, Watersheds
abcdeFBA, alphashape3d, animalTrack, bcROCsurface, bios2mds, BiplotGUI, bpca, brainR, ChaosGame, clippda, ConsRank, corregp, depth, edrGraphicalTools, eegkit, fCI, fdaPDE, FieldSim, foodweb, frontiles, GENEAsphere, gensphere, geoelectrics, geomorph, GGEBiplotGUI, GPoM, hiPOD, hyper.fit, kml3d, lba, longitudinalData, LSAfun, Maeswrap, MDSGUI, metadynminer3d, molaR, morph, mtk, mvmesh, nat, nat.nblast, nat.templatebrains, plot3Drgl, qpcR, qtlc, R330, RadOnc, ROCS, Rpdb, SEERaBomb, snpReady, sphereplot, TestGardener, TTMap, TukeyRegion, VecStatGraphs3D
abcdeFBA, cosso, designmatch, FRAPO, LPmerge, rorutadis, stratbr, TukeyRegion
ArchaeoChron, auRoc, BayesCACE, BayesTwin, BaySIC, BCHM, bdribs, bsam, CNVrd2, gbs2ploidy, gconsensus, lira, MADSEQ, NMADiagT, ordinalRR, pcnetmeta, pexm, phase1RMD, prevalence, PurBayes, R2jags, zoib
AntAngioCOOL, arulesNBMiner, bartMachine, bartMachineJARs, BridgeDbR, collUtils, corehunter, edeR, extraTrees, gaggle, glmulti, GreedyExperimentalDesign, GreedyExperimentalDesignJARs, helloJavaWorld, InSilicoVA, iplots, ISM, JGR, mallet, mwa, paxtoolsr, qCBA, rCBA, rcdklibs, rChoiceDialogs, Rdroolsjars, REPPlab, rflsgen, rGroovy, RH2, RJDBC, rJPSGCS, RJSDMX, rJython, rkafka, rkafkajars, rmcfs, RMOA, RNCBIEUtilsLibs, RNetLogo, RSCAT, rsubgroup, rviewgraph, SBRect, scagnostics, SELEX, sjdbc, spcosa, streamMOA, venneuler, xlsxjars
bioassayR, clstutils, couchDB, edeR, notifyR, pogos, RDSTK, Rfacebook, rJython, rminizinc, RYoudaoTranslate, Storm, streamR, zendeskR
audiolyzR, BaseSpaceR, factualR, LightningR, pxR, R4CouchDB, rbiouml, rbitcoinchartsapi, restimizeapi, RNaviCell, ropensecretsapi, tumblR, weatherr
bistablehistory, HEDA, matchr, microclass, microseq, optimalFlow, prophet, PupillometryR, PupilPre, simITS, SummarizedBenchmark
adea, basecallQC, BDP2, BoneProfileR, Data2LD, DeMixT, FAMetA, frequency, netresponse, qra, RcmdrPlugin.UCA, RPA, sangeranalyseR, sesameData, tufterhandout
correlbinom, frmqa, GeDS, LDOD, LIHNPSD, MixedPoisson, RankProd
coxed, FeaLect, lordif, missDeaths, nonparaeff, pleio, QHScrnomo, rmsb, seawaveQ, Tsphere
BMA, ccaPP, cvTools, ddalpha, DetMCD, dmm, ForwardSearch, GWmodel, ltsbase, MALDIrppa, MBmca, muma, perryExamples, poissonMT, qpcR, RobExtremes, robfilter, robmed, RobPer, RobustAFT, robustgam, robustHD, robustsur, rrcov, rrcovHD, rrcovNA, sscor, tsqn, univOutl
ASpediaFI, Comp2ROC, cvAUC, EBPRS, EMP, GsymPoint, iFad, maPredictDSC, obliqueRF, RcmdrPlugin.ROC, rocc, ROP, subtype, swa, utiml
basifoR, ibmdbR, ImportExport, mixsep, RODM, stacomirtools
AdvBinomApps, diffdepprop, ecolMod, eel, errint, FME, GSED, kmc, NORMA, PriorGen, ProbYX, prop.comb.RR, ReacTran, rtip, weightedScores
erpR, gamlss.demo, GUIDE, LinRegInteractive, MDSGUI, optBiomarker, RVideoPoker, smovie, spatstat.gui, stpp
ada, adabag, AntAngioCOOL, chemometrics, DidacticBoost, DStree, dtree, gamlss.add, GENEAclassify, GPLTR, iBST, jlctree, LongCART, longRPart2, maboost, maptree, metacart, MplusTrees, MTPS, multiPIM, PSAgraphics, quint, RbcBook1, REEMtree, regclass, rpart.LAD, rpart.plot, rpart.utils, rpartScore, spatstat.core, spc4sts, splinetree, SQB, stima, treeClust
biwt, BMA, DepthProc, flowBeads, fsdaR, groc, muma, riv, RobAStBase, robustfa, rrcov3way, rrcovHD, rrcovNA
alphaOutlier, depmixS4, DiscreteInverseWeibull, DiscreteWeibull, Familias, GsymPoint, HardyWeinberg, IDPSurvival, LDOD, MEIGOR, mipfp, regsem, robustDA, SemiMarkov, SPEM
banocc, BayesianFROC, bayesvl, bmscstan, clinDR, CopulaDTA, dfped, dfpk, DrBats, edstan, evidence, fergm, GPP, GPRMortality, iCARH, JMbayes, MADPop, MIXFIM, PandemicLP, pema, psrwe, tmbstan, varian, visit, walker
BatchGetSymbols, BMRBr, FFdownload, MetaDBparse, qqr, rNOMADS
ArrayExpressHTS, ForImp, R2BEAT, RcmdrPlugin.sampling, samplingbook
AER, CADFtest, cjoint, COUNT, dhglm, evian, gmm, iClick, inference, ivpack, ivregEX, list, mediation, merDeriv, mfx, midasr, momentfit, PeerPerformance, prais, RcmdrMisc, rdd, regtools, strucchange, strucchangeRcpp, vars
bios2mds, DeducerSpatial, deltaGseg, dials, dslice, EpiCurve, flowMap, ggformula, GGPA, MetCirc, methylumi, MineICA, pasadr, PERMANOVA, precintcon, promotionImpact, RolWinMulCor, STPGA, TriMatch, weightr
bpca, Canopy, CHsharp, clippda, FactoClass, iPAC, lba, lle, made4, MDSGUI, oneSENSE, poLCA, STPGA, windex
Autoplotprotein, CNOGpro, DCODE, EnsCat, GeneGA, LSPFP, MethTargetedNGS, mlgt, plotprotein, sangeranalyseR, SMM, specL
adepro, ClusteredMutations, DendSer, elaborator, NetSAM
CelliD, ReactomeGSA.data, scAlign, scAnnotatR, scClassifR, schex
APAtree, arcpullr, basf, bcmaps, canadamaps, chilemapas, ecochange, GADMTools, mapsf, micromap, nngeo, oce, prioritizr, RCzechia, RGISTools, rLFT, siland, spatialreg, spdep, spsurvey, stars, starsExtra, stcos, tilegramsR, transfR, wdnr.gis, wdpar, windAC
ddalpha, distr, ICEbox, modiscloud, plfm, TTS
diagram, ecolMod, marelac, pathdiagram, ReacTran, sparsenet, spnet, symbols
AFheritability, AMPLE, animalEKF, ANOVAreplication, bde, BDP2, BioNetStat, BoneProfileR, cbpManager, clinDR, CLME, CNViz, cocktailApp, competitiontoolbox, complexity, conmet, CoRegNet, crisprseekplus, crunchy, CTTinShiny, demoShiny, dragulaR, DSAIDE, DSAIRM, enviPick, epimdr, EurosarcBayes, Factoshiny, gde, GEOexplorer, GerminaR, ggraptR, gmDatabase, GSCA, gwdegree, iAdapt, ICSShiny, idefix, ifaTools, interimApp, inti, KappaGUI, kgc, LipidMS, loon.shiny, matman, MatrixQCvis, meta4diag, MetaAnalyser, MetCirc, microbiomeExplorer, mirtCAT, monobinShiny, mrMLM.GUI, multichull, mwshiny, oceanis, oneSENSE, ontoFAST, optimStrat, paramGUI, plotSEMM, ProbBayes, psichomics, QTL.gCIMapping.GUI, rblt, Repliscope, REPPlabShiny, reverseR, RSCAT, sangeranalyseR, schex, SEA, serieslcb, sglr, ShinyImage, shinyMethyl, shinySIR, shinystan, skpr, Sofi, spsComps, SRS, statnetWeb, SubVis, systemPipeShiny, tenXplore, TimerQuant, tripr, visae, wallace, yonder
adepro, BDP2, BioNetStat, dccvalidator, Eagle, GEOexplorer, interimApp, iSTATS, meta4diag, oceanis, psichomics, pwrEWAS, soundgen, spotGUI, tripr
cbpManager, conmet, gwdegree, iAdapt, monobinShiny, paramGUI, sangeranalyseR, TCGAbiolinksGUI
crisprseekplus, monobinShiny, RSCAT, sangeranalyseR, ShinyImage, stmgui
eegkit, gemlog, GENEAclassify, hsdar, MALDIrppa, matrixProfile, nowcastDFM, ProTrackR, Rivivc, TBEST, TDD
FSTpackage, GenoScan, LGEWIS, LGRF, Mega2R, WGScan
biogram, BiRewire, BullsEyeR, designmatch, maptpx, qlcMatrix, R.temis, RcmdrPlugin.temis, Rcplex, Rglpk, sbw
enveomics.R, GenForImp, goft, LIHNPSD, MCMCtreeR, PERFect
bipartite, CEoptim, cssTools, EloRating, GGPA, hergm, ndtv, NetCluster, Rambo, relevent, SSrat, statnet
ArrayExpressHTS, cn.farms, doSNOW, flowMerge, metaSeq, MonteCarlo, snowfall
adnuts, AMOEBA, bmem, CGHcall, fugeR, georob, GlobalDeviance, hsphase, kcirt, lle, MEIGOR, MicSim, MSEtool, multiridge, NUCOMBog, ParallelDSM, peperr, reddPrec, soilhypfit, stratbr, VertexSort, widals
adehabitatHR, adehabitatHS, adehabitatLT, adehabitatMA, animalEKF, AQuadtree, automap, BarcodingR, bfsMaps, CAMAN, CCAMLRGIS, chronosphere, colorscience, ConR, constrainedKriging, ctmcmove, DClusterm, DeducerSpatial, dismo, DivE, DMMF, ecospat, elsa, excursions, ExtractTrainData, FedData, fossil, frontiles, GADMTools, gDefrag, GeoFIS, georob, geospt, geosptdb, GISTools, glacierSMBM, graticule, GSCA, gwer, GWmodel, hglm.data, ibeemd, INLABMA, inlabru, intamap, intkrige, itcSegment, KappaV, KnowBR, LabourMarketAreas, landsat, landsepi, lidR, MapGAM, mapmisc, mapReasy, maptools, MazamaSpatialUtils, meta4diag, meteoForecast, meteoland, mgwrsar, micromap, modiscloud, move, orsifronts, ParallelDSM, postGIStools, prioritizr, prioritizrdata, pycno, r2dRue, RandomFields, rangeBuilder, RapidPolygonLookup, raptr, raster, rbgm, rcanvec, recmap, redlistr, rgdal, rgeos, rgplates, RSIP, rtop, rworldmap, rworldxtra, sampSurf, sdm, seg, shadow, ShapePattern, SpatialEpi, spdep, spdplyr, spdynmod, spgrass6, spgwr, splancs, spMaps, spnet, SPODT, ssfa, SSN, stam, surveillance, swissMrP, tbart, UBL, UScensus2000cdp, UScensus2000tract, UScensus2010, usdm, vec2dtransf, vetools, Watersheds, waver, wux
autoFRK, copCAR, fields, gamlss.spatial, LatticeKrig, spThin, varycoef
DWDLargeR, evmix, LKT, modelfree, pheno, QRegVCM, quantreg, RItools, rms, RTextTools, safe, sagenhaft, topGO
adaptsmoFMRI, affluenceIndex, CalSim, dixon, ecespa, envi, gateR, globalKinhom, idar, lacunaritycovariance, latticeDensity, lmfor, replicatedpp2w, selectspm, siar, SIBER, siplab, spagmix, sparr, sparrpowR, SpatEntropy, SpatialVx, stlnpp, ttbary
dbmss, envi, gateR, globalKinhom, lacunaritycovariance, spagmix, sparrpowR, spatstat, spatstat.gui, spatstat.Knet, spatstat.linnet, spatstat.local
spatstat, spatstat.core, spatstat.geom, spatstat.gui, spatstat.Knet, spatstat.linnet, spatstat.local
affluenceIndex, dbmss, dixon, DR.SC, envi, gateR, globalKinhom, lacunaritycovariance, latticeDensity, overlapptest, spagmix, sparrpowR, spatstat, spatstat.core, spatstat.gui, spatstat.Knet, spatstat.linnet, spatstat.local
envi, gateR, lacunaritycovariance, spagmix, sparrpowR, spatstat, spatstat.gui, spatstat.Knet
AMOEBA, BSPADATA, Compind, DCluster, ibeemd, LS2Wstat, spatialprobit, SpatialRegimes, spfrontier, splm, ssfa
ChimpHumanBrainData, clippda, cond, CopulaREMADA, csampling, dglm, diffIRT, FactorCopula, JointModel, JSM, lmeNB, marg, mcll, methylMnM, mixcat, MultisiteMediation, MVR, nlreg, PCMRS, PCS, survsim
AurieLSHGaussian, blink, diathor, VDJgermlines, vwr
acs, AnDE, BiGGR, cchsflow, dataPreparation, easyPSID, eqs2lavaan, EstimationTools, exsic, eyeTrackR, FCSlib, Fgmutils, filesstrings, FRESA.CAD, geotopbricks, goProfiles, kstIO, LindenmayeR, lmomPi, Maeswrap, MethTargetedNGS, microclass, micropan, microseq, morph, mtk, muRL, neuroim, OmnibusFisher, orgR, pafdR, patchSynctex, PersomicsArray, PhysActBedRest, pmxTools, pxR, qqr, ReadDIM, recoder, RegParallel, repello, RGENERATEPREC, rsurfer, sangeranalyseR, SICtools, sim1000G, snpReady, sqlutils, ssh.utils, strex, String2AdjMatrix, SummarizedBenchmark, surveybootstrap, TBFmultinomial, tumblR, VarfromPDB, vfcp
CalibrateSSB, cjoint, csurvey, eatRep, glm.predict, hopit, lavaan.survey, mapStats, MedSurvey, pedgene, relaimpo, samplingbook, spsurvey, sptm, ssfit, StatMatch, svydiags, svyVGAM
BacArena, GlobalFit, RSeed, sybilccFBA, sybilcycleFreeFlux, sybilDynFBA
accrual, BiplotGUI, canceR, forensim, MBCB, MDSGUI, mixsep, PDE, RclusTool, SeqFeatR, TELP
brxx, BTLLasso, earth, plotmo, RcmdrPlugin.TeachingDemos, RcmdrPlugin.UCA
CopulaREMADA, PTAk, SOUP, spatstat.sparse, tensorTS
dhReg, EBSeq, exactci, hedgehog, httptest, humanFormat, hySpc.testthat, kergp, MInt, oce, ocedata, Oscope, overlapping, qrqc, StableEstim, testdat
CellBench, DataViz, egor, flatr, inti, microseq, ngsReports, pinnacle.data, ProjectTemplate, rattle, RegEnrich, Riex, SummarizedBenchmark, wrassp
BgeeDB, biclustermd, bunching, diathor, geotoolsR, ggmcmc, HPAStainR, inti, mnreadR, nmarank, plantecowrap, radiant.data, Riex, Rtpca, sfc, shinySIR, SummarizedBenchmark, TPP, ushr
div, optimos.prime, qqr, tidyMicro, WinRatio, wrappedtools
EpiCurve, fAsianOptions, fAssets, fBasics, fBonds, fCopulae, fExoticOptions, fExtremes, fGarch, fImport, fMultivar, fNonlinear, fOptions, fPortfolio, fRegression, fTrading, fUnitRoots, samplesize4surveys, TimeProjection, timeSeries
fAsianOptions, fAssets, fBasics, fBonds, fCopulae, fExoticOptions, fExtremes, fGarch, fImport, fMultivar, fNonlinear, fOptions, fPortfolio, FRAPO, fRegression, fTrading, fUnitRoots, QRM
BiplotGUI, ConvergenceConcepts, fisheyeR, forensim, genArise, GGEBiplotGUI, GUIDE, MDSGUI, RclusTool, RVideoPoker, SyNet
BullsEyeR, DeducerText, manifestoR, R.temis, RcmdrPlugin.temis, RNewsflow, stmgui, tm.plugin.dc, Xplortext
dfrr, epistasis, fExpressCertificates, imputeLCMD, propagate, spatialprobit, spfrontier, uskewFactors
lifecourse, PST, seqhandbook, TraMineRextras, WeightedCluster
blatent, brnn, GsymPoint, imp4p, NPflow, RCRnorm, serrsBayes, vagam, validateRS, zCompositions
cepp, glmm, iWeigReg, mcemGLM, MInt, RCAL, relevent, UMR, UWHAM
TScompare, TSfame, TSmisc, TSMySQL, TSodbc, TSPostgreSQL, TSsdmx, TSSQLite
acp, CADFtest, deltaGseg, earlywarnings, forecTheta, fpp, mgarchBEKK, MisRepARMA, PdPDB, RcmdrPlugin.UCA, VLTimeCausality
GraphPAC, isocir, PairViz, penDvine, tspmeta
ffpe, matrixProfile, quantmod, Riex, smoother, SSDforR
AmigaFFH, karaoke, monitoR, PAMpal, ProTrackR, sonify, warbleR
CADFtest, ECTTDNN, frequencyConnectedness, mleur, vars
ECTTDNN, frequencyConnectedness, GVARX, RMAWGEN, Spillover, svars, tsapp
analogue, ausplotsR, BBI, BDMMAcorrect, betaper, BiodiversityR, bipartite, blender, cml, cocorresp, CommEcol, CommunityCorrelogram, dave, diathor, easyCODA, FD, FreeSortR, iDynoR, isopam, KnowBR, metacom, MiSPU, mpmcorrelogram, ordiBreadth, OTUbase, otuSummary, paleoMAS, picante, RAM, rareNMtests, rdacca.hp, segRDA, SRS, vegan3d
AnaCoDa, BayesGOF, deepSNV, DIFtree, EffectStars, errint, EurosarcBayes, iteRates, monocle, ordDisp, r3Cseq, regclass, rxSeq, svyVGAM, TBFmultinomial, VGAMdata, VGAMextra
bsem, fields, gamblers.ruin.gameplay, heatmaply, reinsureR
adwave, MassSpecWavelet, RHRV, W2CWM2C, wavemulcor, wmlf
BHMSMAfMRI, binhf, calcWOI, costat, CVThresh, deltaGseg, haarfisz, locits, LS2W, mvLSW, waveband
cdata, rqdatatable, rquery, seplyr, vtreat, WVPlots
DataLoader, ELT, ISM, IsoGeneGUI, MSGFgui, polyPK
acs, AffyCompatible, annotate, Autoplotprotein, bioCancer, CellNOptR, compareODM, curatedBreastData, DeepBlueR, EcoHydRology, EcoTroph, EIAdata, epxToR, ESEA, GeneAnswers, gnumeric, grImport, hkex.api, hmdbQuery, iDynoR, MetaDBparse, mtk, ONETr, osmar, paxtoolsr, plotprotein, pmml, pumilioR, rFDSN, RGalaxy, rgrass7, rHpcc, Rlinkedin, rneos, RpsiXML, RXMCDA, SBMLR, scrapeR, SPARQL, spgrass6, StatDataML, SubpathwayGMir, symbolicDA, VarfromPDB, weatherr, WikipediaR, XML2R
BMRBr, ExpressionAtlas, FFdownload, hyperSpec, interlineaR, qqr, RSauceLabs, seleniumPipes, xslt
A3, AmpliconDuo, BHTSpack, FactoClass, generalCorr, Hiiragi2013, klausuR, likert, LinRegInteractive, MineICA, multilevelPSA, nlcv, pamctdp, papeR, PERMANOVA, permPATH, qrqc, RcmdrPlugin.Export, RcmdrPlugin.NMBU, reporttools, rplotengine, ssize, surveillance, survSNP, TableMonster
bidask, bimets, bsts, cotrend, DeRezende.Ferreira, eDMA, egcm, EIAdata, FFdownload, FinancialInstrument, GVARX, hydroTSM, IBrokers, iClick, JFE, lfstat, mvLSW, neverhpfilter, PerformanceAnalytics, portfolio.optimization, PortfolioAnalytics, portsort, Quandl, quantmod, RblDataLicense, rblt, RcppXts, Riex, rts, rtsdata, YieldCurve
AER, AutoSEARCH, betategarch, bimets, bsts, caschrono, changepoint, dendRoAnalyst, dendrometeR, dtwSat, dyn, dyncomp, dynlm, eDMA, egcm, EIAdata, EloRating, EnvCpt, Evapotranspiration, fCI, FFdownload, FinancialInstrument, FinTS, foreSIGHT, fts, fxregime, garchx, geotopbricks, geovol, gets, glogis, GroupBN, HEDA, hydroGOF, hydroTSM, IBrokers, iForecast, lgarch, lmtest, mar1s, matrixProfile, meteoForecast, Modalclust, mvLSW, neverhpfilter, NitrogenUptake2016, PortfolioAnalytics, portsort, quantmod, RcmdrPlugin.temis, RelValAnalysis, Riex, RJSDMX, RolWinMulCor, sde, solaR, Spillover, StreamMetabolism, strucchange, strucchangeRcpp, Sushi, SWMPr, tgram, trackeR, treasuryTR, tvgarch, vioplot, vulcan, xts, yuima
alleHap, arm, Arothron, audrex, autoBagging, autoMFA, autonomics, bamp, BayesComm, bayesPop, BayesRGMM, BayesS5, BEclear, berryFunctions, BGVAR, biomod2, blin, bootnet, boral, brainGraph, brms, cape, car, Cascade, CFC, ClimDown, colordistance, communication, COMPASS, conos, cope, CoTiMA, crunch, cSEM, CSTools, diceR, dmbc, DmelSGI, easyNCDF, EBImage, EBMAforecast, elementR, EventPointer, eventstream, factoextra, fastshap, fic, fishpond, flowcatchR, fmerPack, funData, furrowSeg, georob, geoviz, ggimg, ggspatial, GGUM, Gmisc, gremes, gsynth, GWEX, h5vc, hadron, hdiVAR, HH, HiLDA, HLSM, Hmsc, IAcsSPCR, iCARH, imcRtools, integIRTy, IPMbook, IRSF, isoWater, jenga, kamila, kgschart, lambdaTS, latentnet, ldsep, LeMaRns, LifeInsuranceContracts, lolR, LSDinterface, LSDsensitivity, MachineShop, magclass, mashr, MAST, mbest, mcmcderive, mcmcr, merTools, MFPCA, mgc, micemd, microsamplingDesign, mlVAR, MM, modnets, MonteCarlo, mrfDepth, msaeRB, MSEtool, ncdf4.helpers, NetLogoR, NetRep, NetworkChange, neurobase, neuroim, nlist, nmm, oceanmap, OncoBayes2, openCR, OpenRepGrid, origami, oro.nifti, PAIRADISE, patternize, Patterns, pcalg, PCMBaseCpp, PLMIX, poliscidata, polyqtlR, posterior, postGGIR, postpack, proteus, pssm, psychonetrics, pwrEWAS, qgraph, qtlpoly, quantspec, r.jive, R2jags, ragt2ridges, Rcmdr, RcmdrMisc, recolorize, rerddapXtracto, rfPermute, RItools, RLumCarlo, rma.exact, RNAinteract, RNCEP, rosm, rrscale, rSHAPE, rtide, s2dv, s2dverification, SAMGEP, scTensor, secr, secrdesign, segmentSeq, SelectBoost, smacpod, smcfcs, snfa, SoundShape, SpaCCr, spagmix, spant, SparseTSCGM, spatPomp, spatstat.core, SpecDetec, spOccupancy, ssdtools, startR, stfit, str2str, surf, telefit, tensorBSS, TensorClustering, tensorTS, tetragon, tmap, torchvision, treeclim, Umatrix, viewpoly, wavScalogram, wiad, xLLiM, ZVCV
AnnuityRIR, BTSPAS, ChainLadder, CompDist, episensr, fitur, GenHMM1d, kendallRandomWalks, mbbefd, OpVaR, orders, proteus, RobExtremes, robmixglm, ssdtools, teachingApps, univariateML
aCRM, EZtune, hybridEnsemble, nproc, RecordLinkage, traineR
adductomicsR, adegraphics, adespatial, adiv, ads, BalanceCheck, bikm1, clusterSim, deco, dispRity, DrBats, entropart, gTests, HierDpart, hierfstat, hillR, iBBiG, iSDM, Laterality, made4, memgene, metaprotr, mFD, MorphoTools2, motifStack, msap, multiblock, PBD, pez, phylobase, phyloseq, PopGenReport, poppr, RAM, Rarefy, revtools, RVAideMemoire, SCGLR, Select, seqinr, SimEvolEnzCons, STEPCAM, symbolicDA, Thresher, tidyMicro, virtualspecies
adephylo, AlleleShift, apex, DA, graph4lg, HierDpart, hierfstat, SNPfiltR, StAMPP, treespace
adespatial, adiv, ouxy, phylosignal, treespace
copula, FitUltD, nvmix, ParetoPosStable, puniform, qrmtools, StVAR, VineCopula, vines
apc, chantrics, clespr, dLagM, glm.predict, GLMpack, interflex, ivdoctr, ivregEX, ModTools, nmm, prodest, rdlocrand, REndo, robust2sls, scqe, Zelig
fullfact, jmv, pwr2ppl, r2glmm, Superpower
agricolaeplotr, ammistability, doebioresearch, EvaluateCore, factorMerger, grapesAgri1, inti, MAIT, multifluo, NSM3, rPAex
DAMisc, gasfluxes, longit, OpenStats, sars, temperatureresponse
combi, cotram, cSEM, GDINA, GenMarkov, givitiR, intccr, likelihoodAsy, mev, MixTwice, mlt, opera, optiSolve, RCM, riskParityPortfolio, ROI.plugin.alabama, SGB, tramME, TruncatedNormal, varTestnlme
dowser, rabhit, scoper, shazam, tigger, UniprotR
ClusPred, QBAsyDist, qrLMM, qrNLMM, quokar
agricolae, bioCancer, conjoint, DoE.wrapper, radiant.design, SensoMineR, VdgRsm
CluMP, Clustering, cogena, DiffBind, genefu, Linnorm, multiClust
COINr, missCompare, NADIA, OVtool, Zelig
anim.plots, anipaths, BioImageDbs, cartools, Cascade, christmas, cmsafvis, CoSMoS, eChem, enviGCMS, facilitation, gfcanalysis, mdsOpt, mptools, pez, roots, spdynmod, statgenHTP
adheRenceRX, AGread, archiveRetriever, clockify, cqcr, datadogr, E4tools, EMAtools, gtrendsR, moodleR, nprcgenekeepr, onc.api, photobiologyInOut, RDS, rtsdata, salesforcer, shinylogs, threesixtygiving, tidygeoRSS, tidyRSS, timetk, tsbox, tsibble
ARDL, DTR, ExomeDepth, feisr, kissDE, LogisticDx, mmeta, ptmixed, riskclustr, StroupGLMM, xmeta
Clustering, cogena, DAPAR, debCAM, IPCAPS, ipft, kebabs, Linnorm, mAPKL, mina, NFP, outlierensembles, schemr, WebGestaltR
enrichplot, ggbreak, ggheatmap, ggmotif, ggmsa, ggtree, sitePath
doMIsaul, Dune, GREMLINS, ILoReg, l1spectral, pipeComp
attrib, blmeco, blockRAR, carcass, CIMTx, ciTools, DaMiRseq, DMCFB, dnr, drhur, eeptools, GCPBayes, hbsae, list, mi, migui, mlVAR, nondetects, qgcomp, qgcompint, rr, scDD, SEIRfansy, soilassessment, squid, stevemisc, waddR, wfe
baskexact, distantia, iterpc, MKinfer, MOLHD, NetFACS, skedastic, SymbolicDeterminants
MolgenisArmadillo, parqr, pins, RcisTarget, Rnumerai, sfarrow, starvz, strand
ASSOCShiny, Biocomb, clickstream, CLONETv2, discnorm, doMIsaul, easier, inTrees, liayson, opusminer, RareComb, RKEEL, TELP, TFARM, wiseR
DetSel, ggalt, hdrcde, HistogramTools, NSM3, refineR
cytoKernel, debrowser, DiffBind, ldsep, MixTwice
conflr, credentials, fidelius, gert, gpg, keyring, newsanchor, openssl, qpdf, ssh, theiaR
anomaly, autonomics, beastier, beautier, changepoint.mv, matrixpls, multicrispr, netmhc2pan, rdrop2
assertive, assertive.code, assertive.data, assertive.data.uk, assertive.data.us, assertive.datetimes, assertive.files, assertive.matrices, assertive.models, assertive.numbers, assertive.properties, assertive.reflection, assertive.sets, assertive.strings, assertive.types, flippant, multipanelfigure, poio, tensorr
assertive, assertive.code, assertive.types, flippant, multipanelfigure, poio, tensorr
assertive, assertive.data, assertive.data.uk, assertive.data.us, flippant, poio
assertive, assertive.code, assertive.datetimes, assertive.strings, basecamb, BlanketStatsments, flippant, i2dash, multipanelfigure, percentiles, poio, tensorr, vistime
bitmexr, dockerfiler, eph, FielDHub, gargoyle, gitdown, golem, gwpcormapper, languagelayeR, neo4r, proustr, shinipsum, tidystringdist
cmaRs, hybridEnsemble, interpretR, iRF, kernelFactory, optiRum
adepro, beepr, drumr, meditate, music, tsmp
FeedbackTS, hydroTSM, intamap, psgp, SUNGEO
flowWorkspace, heapsofpapers, HubPub, mapboxapi, MolgenisArmadillo, neurohcp, RLSeq
aws.alexa, aws.comprehend, aws.ecx, aws.iam, aws.kms, aws.lambda, aws.polly, aws.s3, aws.transcribe, aws.translate, flowWorkspace, text2speech
AzureCognitive, AzureGraph, AzureKeyVault, AzureKusto, AzureRMR, Microsoft365R
AzureCognitive, AzureContainers, AzureCosmosR, AzureKeyVault, AzureKusto, AzureQstor, AzureStor, AzureTableStor, AzureVision, AzureVM, SAR
base64url, BatchExperiments, BatchJobs, batchtools, brms, broom, checkmate, cleaner, cobalt, crossmap, dm, incase, MatchIt, mcboost, mlr, mlr3, mlr3cluster, mlr3db, mlr3filters, mlr3misc, mlr3oml, mlr3pipelines, mlrCPO, mlrintermbo, mlrMBO, nlmixr, OpenML, paradox, ParamHelpers, piecepackr, plu, prt, quickPlot, ricu, RxODE, simstudy, SMDIC, SpaDES.tools, stringb, styler, supernova, tfautograph, WeightIt
bpcs, GD, presenter, tidybins, TidyConsultant, validata
algorithmia, aws.kms, aws.lambda, aws.s3, aws.signature, beakr, blastula, ChemmineR, cognitoR, cubeview, CytoML, daiR, dash, dataone, deckgl, DeMixT, dipsaus, distill, downloadthis, DSMolgenisArmadillo, emayili, emuR, FastRWeb, flextable, gifti, gitlabr, gm, gmailr, googleLanguageR, grImport2, gt, Hmisc, htmltools, ideal, imgrec, jmvcore, jsTreeR, Knoema, kntnr, leafem, leaflegend, leaflet, leafpop, loon.shiny, MALDIquantForeign, manifestoR, manipulateWidget, mapscape, mapview, mathpix, mlflow, mRpostman, neo2R, neurohcp, openeo, paws.common, pcaExplorer, plotly, pointblank, qrencoder, R.devices, radiant.data, rAmCharts4, RaMS, RCy3, RCyjs, readMzXmlData, repr, RMixpanel, Rnmr1D, RSiteCatalyst, rsyntax, RTTWebClient, safer, salesforcer, sendgridr, sendmailR, shinyscreenshot, sketch, slickR, sparklyr, stickr, summarytools, swirlify, tangram, terrainr, texPreview, tfruns, threejs, TKCat, trelliscopejs, tutorial, UNF, vcr, webchem, webdriver, webmockr, wordcloud2, xmlrpc2
batchtools, dipsaus, drake, otp, RCy3, txtq, zoltr
AlpsNMR, NADfinder, pems.utils, powdR, specmine, spectacles, spectralAnalysis, takos
adventr, AovBay, CGPfunctions, condir, jmv, JustifyAlpha, multifear, neatStats, quid, statsExpressions
BGVAR, BTYDplus, compositions, effectFusion, HBglm, mvProbit, RGremlinsConjoint
AntMAN, baggr, bang, bayesforecast, bayesGAM, bayesvl, blavaan, brms, dmbc, epidemia, FlexReg, hmclearn, lgpr, mcp, missingHE, MixSIAR, multinma, NPBayesImputeCat, OncoBayes2, pivmet, RBesT, revdbayes, rstanarm, shinystan, simmr, TriDimRegression
brmsmargins, correlation, effectsize, eiCompare, fbst, modelbased, multifear, neatStats, parameters, performance, psycho, report, see, sjPlot, sjstats
aftgee, antitrust, bayNorm, BinOrdNonNor, CatDyn, combi, coxrt, DSBayes, garma, glinvci, ktsolve, LifeHist, maczic, mixAR, mlfit, mlt, orsk, pcts, pim, reReg, SimCorrMix, SimMultiCorrData, SPAS, spef
aslib, autostats, BatchExperiments, BlockCov, delayed, DynNom, E4tools, fail, farff, flacco, FRASER, grapherator, llama, mbsts, mlr, mlrCPO, mlrMBO, mosmafs, nandb, OpenML, OUTRIDER, parallelMap, ParamHelpers, RBPcurve, SHAPforxgboost, smoof, SwarmSVM, tspmeta, tuneRanger, validata, Xeva, yakmoR
bivgeom, DEsingle, diseq, econet, emdbook, fastLaplace, fitODBOD, fusionclust, HiCDCPlus, Luminescence, M3Drop, metaplus, mistr, pguIMP, RJafroc, robmixglm, rstpm2, scRecover, ss3sim, WLinfer
mlr3fselect, mlr3hyperband, mlr3tuning, mlr3verse, mlrintermbo, sense
bbmle, famSKATRC, finalfit, pcalg, plm, plsVarSel, PRSPGx, sparsediscrim, splm
crlmm, DepecheR, MetaNeighbor, minfi, rdi, regplot, SIAMCAT
codebreaker, dadjokeapi, DCPO, gbm.auto, LDAShiny, LilRhino, MixedPsy, naspaclust, pixelpuzzle, SimDesign, upstartr
BloodCancerMultiOmics2017, clickR, ggbeeswarm, HiResTEC, IRTShiny, mitch, tmod
additiveDEA, farrell, jackstrap, npbr, rcDEA
disk.frame, DMCFB, kernelPhil, mbkmeans, opdisDownsampling, ormBigData, ppcseq, spatialLIBD, SPOTMisc
BRINDA, extremeStat, MDMAPR, multiverse, OSMscale, presenter, rdwd, rskey, skedastic
betaBayes, BetaPASS, BiSeq, distreg.vis, DMRcaller, earlygating, ecoCopula, gcmr, hier.part, MarginalMediation, opticut, PASSED, plsRbeta, SetMethods, vortexR
behaviorchange, epiR, gridsampler, missMethyl, ORCI, sensitivity2x2xk, senstrat, tools4uplift
Anthropometry, BiBitR, biclustermd, FunCC, miRSM, mosbi, rqubic, sigQC
bigparallelr, bigreadr, bigsnpr, bigsparser, bigstatsr, bigutilsr, runonce
BGData, bigMap, bigstep, bigSurvSGD, ChIPXpress, dtwclust, gesso, iCAMP, kangar00, kofnGA, lmmpar, mbest, mina, misclassGLM, MMD, mrMLM.GUI, MXM, netDx, NST, overture, parseRPDR, Rdsm, rMVP, s2dv, s2dverification, simlandr, slimrec, startR, treeman, xrnet
AnVILBilling, basedosdados, BiocOncoTK, restfulSE, ReviewR
bigdist, chickn, Directional, HDBRR, MAGAR, pchc, PRSPGx, SSDL
AGread, DPWeibull, hmgm, rdiversity, rfVarImpOOB
bnem, bootLR, EGRETci, epikit, escalation, GenderInfer, inctools, NSM3, papci, RJafroc, sarks, seedr, simr, TreatmentSelection, trialr, xgxr
aLFQ, compas, COUSCOus, EnvNJ, Fiscore, ptm, r3dmol, vanddraabe
affy, affylmGUI, AnnotationHub, AnnotationHubData, AnVIL, anyLib, aroma.core, BiocCheck, BiocPkgTools, BiocStyle, biocthis, biocViews, CALANGO, ccmap, ChIPanalyser, Cogito, crisprseekplus, crossmeta, EDASeq, EnrichmentBrowser, esATAC, EuPathDB, ExperimentHub, ExperimentHubData, gcrma, GCSscore, geneExpressionFromGEO, GenomicScores, GOTHiC, HubPub, IDSL.IPA, IDSL.UFA, librarian, lipidomeR, MetaIntegrator, MiRaGE, NMF, oligoClasses, OrganismDbi, pkgndep, Prostar, ProteomicsAnnotationHubData, pwrEWAS, RAMClustR, RforProteomics, rmspc, rvcheck, SCRIP, scTensor, SeqGate, SingleCellSignalR, srnadiff, tinyarray, umiAnalyzer, webbioc
bootPLS, cassandRa, econetwork, econullnetr, NIMAA, PhageCocktail, plsRglm, RPANDA, tapnet
ADaCGH2, BGData, ETLUtils, ffbase, flowClean, observer, symDMatrix
antaresRead, arrow, artMS, bigrquery, boxr, CVXR, Cyclops, DatabaseConnector, DIAlignR, disk.frame, dplyr.teradata, epitweetr, fbRads, framecleaner, hdf5r, heims, influxdbclient, IONiseR, jsontools, nanotime, odbc, ptairMS, pvLRT, RClickhouse, Rdiagnosislist, rFIA, RMariaDB, RPostgres, RSQLite, sergeant, shinylogs, simfinapi, torch, TreeTools, twitteR, vroom, whSample
ArrayExpressHTS, caTools, cherry, CINdex, CorrectOverloadedPeaks, entcn, geozoo, gepaf, getProxy, GGIR, ggmap, gt, mapsapi, MODIStsp, multiCA, oro.nifti, osrmr, RCurl, rLiDAR, Rsamtools, rStrava, ryandexdirect, semtree, sysid
dbflobr, DBItest, dbplyr, flobr, odbc, RMariaDB, RPostgres, RSQLite, sparklyr
econetwork, expSBM, GREMLINS, MLVSBM, robber, sbm
colorfindr, MtreeRing, readbitmap, RPPASPACE, shelltrace
BayesianNetwork, BayesNetBP, bayesvl, bnmonitor, bnpa, BNrich, bnviewer, CovSelHigh, dbnlearn, dbnR, GmicR, hmma, imbalance, mDAG, MetNet, MoTBFs, MRPC, pchc, Pigengene, PROPS, r.blip, rPACI, SELF, StratifiedBalancing, TRONCO, wiseR
BiocStyle, BiocWorkflowTools, blogdown, bookdownplus, clinDataReview, distill, gitdown, hhcartr, iheiddown, jds.rmd, marked, memoiR, ncappc, Orcs, pagedown, rmdformats, rmdplugr, rolldown, rsf, rtemps, rUM, SBGNview, SBGNview.data
adductomicsR, fishmethods, GENLIB, GRTo, htestClust, IntegratedMRF, multifear, MultivariateRandomForest, QFASA, survcomp
BatchJobs, batchtools, cola, diezeit, GladiaTOX, leafletR, leafpop, nlmixr, opencpu, pkgndep, rdnb, Rook, roxygen2, RWsearch, tinyProject, uavRmp
analogue, BradleyTerry2, brlrmr, MixedPsy, PrecisionTrialDrawer
BAMBI, bayesforecast, BayesianFROC, BayesianTools, BayesTools, brms, metaBMA, RoBMA, StanMoMo
bayesmodels, BayesPostEst, brmsmargins, ESTER, exdqlm, PoolTestR, shinybrms
BMTAR, bridgesampling, eBsc, gmvarkit, momentuHMM, MPTinR, multibridge, multimark, uGMAR, untb
aba, AgroReg, allestimates, AovBay, apaTables, autocogs, autohd, autostats, batchtma, breathtestcore, broom.helpers, broom.mixed, broomExtra, bumbl, card, catenary, catfun, cdom, chest, ChIPexoQual, conjoint, convergEU, crossmap, dcurves, decoupleR, DEGreport, DeLorean, describedata, did2s, didimputation, DiscoRhythm, disto, doBy, dragon, echarts4r, edwards97, eoffice, equatiomatic, ERSA, eurostat, explore, eyetrackingR, finalfit, forestmangr, forestmodel, funneljoin, geepack, germinationmetrics, glmmfields, gtsummary, gWQS, healthyR.ai, highcharter, infer, insane, isomiRs, itraxR, JSmediation, konfound, lactater, lcsm, LDAShiny, lin.eval, MapeBay, mason, mice, microbial, microbiomeExplorer, midasHLA, modelr, modelsummary, moderndive, mosaic, mudfold, multifear, NetworkExtinction, NPARC, omicwas, packDAMipd, pbkrtest, PHEindicatormethods, pixiedust, POMA, POV, prettyglm, psychReport, PVplr, R2MLwiN, radiant.data, radiant.model, RCT, RKorAPClient, robomit, rstatix, sclr, sdcLog, SemNeT, simglm, SimplifyStats, simts, sjstats, skedastic, sovereign, specr, stabiliser, statsr, StroupGLMM, survminer, survParamSim, sweep, SWMPrExtension, takos, temperatureresponse, tidycmprsk, tidycomm, tidyMicro, tidymodels, tidyverse, TPP, tradepolicy, TSS.RESTREND, valr, visR, widyr
autostats, broomExtra, censcyt, equatiomatic, eyetrackingR, glmmfields, hmi, konfound, merTools, stevemisc
aweSOM, bs4Dash, connectwidgets, datacleanr, DCEtool, MDMAPR, pkgdown, postcards, shiny, shinyWidgets
downloadthis, drawer, elaborator, IOHanalyzer, subscreen, systemPipeShiny, visxhclust
daqapo, edeaR, heuristicsmineR, processanimateR, processcheckR, processmapR, processmonitR, xesreadR
baguette, fmf, gencve, imbalance, MetabolomicsBasics, ModTools, Pigengene, StratifiedRF
CAinterprTools, clustrd, idm, inpdfr, RcmdrPlugin.temis, vcdExtra, visae
aquodom, ffscrapr, memoise, meteospain, nflreadr, rgoogleads, shiny, slackr
adepro, DAPAR, dextergui, FastRWeb, flowCut, ggrastr, HTSeqGenie, iSTATS, memery, MetaComp, mmaqshiny, ncappc, scde, SGP, valhallr, visStatistics, visvow
directPA, DMCHMM, Doscheda, geneticae, migration.indices, PopGenReport, qqman, SeqFeatR, STATegRa
AMARETTO, cometr, cyclocomp, DBItest, devtools, document, dodgr, eplusr, future.callr, gitgadget, gradeR, languageserver, mlrintermbo, multidplyr, outsider.base, packager, pkgbuild, pkgcache, pkgdepends, pkgdown, raveio, rcmdcheck, Rcrawler, reportfactory, reprex, rextendr, rhub, RLSeq, RoBMA, seeds, SGP, shinymeta, shinytest, SPOTMisc, targets, testthat, torch, webdriver, webshot, workflowr
adjclust, coseq, GNSSseg, HTSCluster, MuChPoint, PhylogeneticEM, shock, slm, xLLiM
adventr, afex, anacor, ANOVAIREVA, AovBay, apaTables, apc, aPCoA, apt, ART, ARTool, BayesianFROC, bayesLife, bbw, BiocOncoTK, blorr, boot.pval, CADStat, Cluster.OBeu, clusterPower, cna, Countr, cprobit, DAMisc, drc, drhur, dynlm, dynr, eatRep, ecm, EffectLiteR, envoutliers, epr, ERSA, EvaluateCore, ez, FactoMineR, fdm2id, fingerPro, flipscores, flowDensity, flowPloidy, forestmangr, FSA, fxregime, gcmr, glmmSeq, ibd, iClick, interactionR, iNZightRegression, its.analysis, ivreg, jmv, ldamatch, lidaRtRee, lilikoi, lmviz, LSDsensitivity, Maaslin2, MapeBay, matlib, MDMR, medflex, miceafter, microbiomeExplorer, MIIVsem, mixlm, ModTools, MorphoTools2, MPGE, MultBiplotR, multiblock, mvdalab, MVN, MWASTools, My.stepwise, nardl, NBSplice, neatStats, NetLogoR, NGSSEML, NHPoisson, NonlinearTSA, NormalyzerDE, olsrr, oncoPredict, OncoSimulR, onewaytests, OpenStats, packDAMipd, pdR, PhenStat, piecewiseSEM, plsRglm, PointFore, poliscidata, prettyglm, PROreg, psfmi, pubh, pwr2ppl, quest, r2spss, rADA, radiant.data, radiant.model, radiant.multivariate, rasclass, RcmdrPlugin.NMBU, referenceIntervals, robCompositions, rosetta, rqt, rstatix, RTN, RVAideMemoire, ryouready, SARP.compo, scan, scorecardModelUtils, sdamr, sdcMicro, seedreg, SemNeT, SignifReg, sim2Dpredictr, simr, SimTimeVar, skpr, spsur, Statsomat, StroupGLMM, tidyMicro, twowaytests, vannstats, VIM, zetadiv
AdaSampling, aLFQ, ampir, animalcules, assignPOP, autoBagging, biomod2, BLRShiny, BLRShiny2, bnviewer, caretEnsemble, CAST, cat2cat, catSplit, chemmodlab, ChIC, ChIC.data, classifierplots, ClinicalUtilityRecal, clustDRM, CMShiny, coca, ConfusionTableR, conquer, ContaminatedMixt, CopulaCenR, crtests, CSUV, CTShiny, CTShiny2, CytoGLMM, cytominer, D2MCS, DamiaNN, DaMiRseq, datafsm, dbcsp, dissever, DMLLZU, DMTL, driveR, dtwSat, eclust, Ecume, ensembleR, fairness, fdm2id, FeatureTerminatoR, featuretoolsR, fieldRS, fmf, foster, FSinR, FuncNN, glmdisc, glmtrans, glmtree, GPCMlasso, healthcareai, HPiP, hypervolume, icardaFIGSr, iSFun, JFE, KCSKNNShiny, KCSNBShiny, kfa, KNNShiny, KnowSeq, LassoGEE, latrend, LDLcalc, lilikoi, LncFinder, LPRelevance, m2b, MAI, MAIT, mand, mcca, metabCombiner, MetabolomicsBasics, MetaClean, metaEnsembleR, microbiomeMarker, MiDA, mikropml, mistyR, MLDAShiny, MLDAShiny2, mlquantify, MNLR, modelgrid, mosaicModel, MRFcov, MSiP, MSstatsSampleSize, multiclassPairs, multiSight, NBShiny, NBShiny2, NBShiny3, nbTransmission, NeuralSens, NNS, NoiseFiltersR, nonet, NonProbEst, npcs, OddsPlotty, oncrawlR, OOS, panelWranglR, ParallelDSM, parboost, pathwayTMB, PDATK, Pi, POMA, preciseTAD, PredPsych, predtoolsTS, PriceIndices, pRoloc, quantable, RadialVisGadgets, RaSEn, refitME, RelimpPCR, REMP, RISCA, rmda, robustcov, RStoolbox, Rtropical, scAnnotatR, scClassifR, scGPS, sentometrics, shinyr, SLEMI, soilassessment, specmine, sregsurvey, ssr, stabiliser, stepPenal, studyStrap, SubCellBarCode, supersigs, swag, TCGAbiolinksGUI, TestDimorph, TIGERr, transcriptR, TSGS, varEst, waterquality, waves, WRTDStidal
alookr, anomaly, BayesPostEst, bdynsys, cape, ChIC, compcodeR, CondIndTests, convergEU, countsimQC, CSMES, DNLC, DriveML, EMMAgeo, envlpaster, eseis, factset.analyticsapi.engines, flowPloidy, GCalcium, GeneAccord, GmAMisc, gplots, iglu, ImpactEffectsize, infercnv, m2b, MIMSunit, mirTarRnaSeq, mmaqshiny, nonlinearICP, opdisDownsampling, opGMMassessment, PharmacoGx, R2Addhaz, RadioGx, RSelenium, RTextTools, SAFARI, spp, TFBSTools, ToxicoGx, vulcan
dcminfo, immer, LAM, mdmb, mnlfa, sirt, STARTS
AOV1R, googlesheets, googlesheets4, mschart, readODS, readxl, readxlsb, unpivotr
cbaf, g3viz, LowMACA, PrecisionTrialDrawer, TRONCO
AEDForecasting, CONFESS, crossvalidationCP, densitr, envoutliers, eventstream, flowAI, flowClean, FlowScreen, GISPA, MPAgenomics, msltrend, PCDimension, PCRedux, phenocamr, sssc, STOPES, trackeRapp, TrendSLR, vanquish
biodb, biodbKegg, dbflobr, dttr2, extras, flobr, irg, mcmcderive, mcmcr, nlist, readwritesqlite, rpdo, rtide, sims, ssddata, ssdtools, term, tinter, ypr
bgsmtr, CausalMBSTS, CovCombR, dyads, MixMatrix, singcar
AWAPer, bdvis, bea.R, BusinessDuration, compareGroups, dga, Dominance, E4tools, eSIR, FishResp, geoviz, iNZightPlots, iNZightTools, movecost, nzffdr, pmxTools, ptairMS, qdap, qdapTools, redcapAPI, rugarch, sqldf, TideCurves, TideTables, TREXr, uHMM, ViSiElse, wakefield
abseqR, acc, AMARETTO, armada, artMS, barcodetrackR, BasketballAnalyzeR, blacksheepr, BloodGen3Module, canceR, capm, CATALYST, celda, CeTF, CHRONOS, CINNA, cola, ComplexHeatmap, cytoKernel, dcanr, DEGreport, DEP, DEsubs, diffcyt, ELMER, EnrichedHeatmap, ethnobotanyR, ForecastTB, GALLO, GeneTonic, GenomicTools, gfer, gtrellis, HilbertCurve, immunarch, InterCellar, iSEE, ITNr, LineagePulse, LymphoSeq, MesKit, migest, MKomics, mldr, MOMA, monaLisa, MoonlightR, OpenLand, pacviz, PeacoQC, PhosR, pipeComp, polyPK, profileplyr, recoup, RepertoiR, rexposome, rKOMICS, RLSeq, RVA, scITD, sechm, SEtools, sigQC, simplifyEnrichment, SingleCellSignalR, singleCellTK, sparrow, spiralize, SubgrPlots, tidyHeatmap, TRONCO, visxhclust, wilson, YAPSA
discharge, eRTG3D, foieGras, MCSim, momentuHMM, NetLogoR, SpaDES.tools, SpatialVx, ssMousetrack
actel, activity, activityGCMM, AeRobiology, amt, aRchi, ascotraceR, bayes4psy, bpDir, CircMLE, CircSpaceTime, circularEV, cylcop, ecotraj, HDiR, KarsTS, kernplus, kineticF, monographaR, Ostats, peco, phase, PPTcirc, sharpshootR, tricycle, VoxR, yaps
autostats, CellBarcode, emba, OptCirClust, weitrix
AdaSampling, Biocomb, chemmodlab, chemometrics, childsds, classifly, classInt, clValid, cogena, diceR, DMwR2, e1071, evaluomeR, fdm2id, flexclust, flowBin, fpc, FSinR, gencve, GHap, HistDAWass, ipred, lineup, lisaClust, liver, MAIT, MBHdesign, mlearning, Modeler, ModTools, MorphoTools2, msSurv, mt, OTclust, prcr, pRoloc, qkerntool, RaSEn, RclusTool, RPEnsemble, sClust, scone, signeR, sigQC, som.nn, spathial, spFSR, stylo, supclust, symphony, tscR, twoddpcr, uHMM, UNCLES, wux
Biolinv, biscale, CAinterprTools, cartography, ecospat, eurostat, FAOSTAT, GmAMisc, GoodmanKruskal, insurancerating, mapsf, mapStats, oceanis, plotKML, questionr, sf, shar, spatialrisk, stars, synthpop, tidyvpc, tmap, vpc
CSIndicators, CSTools, easyNCDF, s2dv, startR
AdhereRViz, allcontributors, ARTofR, carbonate, ch, Claddis, corx, crestr, ctrdata, datacleanr, datapasta, details, EPP, gitignore, matahari, packagefinder, portalr, rde, readr, reprex, tidydatatutor, urlshorteneR, usethis, vegalite, xpectr
available, bsub, dbflobr, fobitools, foghorn, gitignore, goodpractice, InteractiveComplexHeatmap, piggyback, POMA, portalr, rcompendium, RFishBC, semtree, TeXCheckR, tidylog, tracer
advclust, airpart, alphabetr, backShift, cds, CDSeq, chameleon, cola, colordistance, comparator, COMPASS, ComplexHeatmap, contiBAIT, ddPCRclust, DESnowball, diceR, dtwclust, epca, flowClust, fungible, iGraphMatch, JADE, lsbclust, mlr3cluster, movMF, MsCoreUtils, muRty, netcom, NetMix, openCyto, pcalg, pipeComp, ppsbm, RcmdrPlugin.FuzzyClust, seqgendiff, simplifyEnrichment, skmeans, statip, stream, svars, tilemaps
akmedoids, amplican, diceR, doMIsaul, functClust, latrend, mfe, mlr3cluster, scDHA, SCFA, visxhclust
corTest, DoubleML, FracKrigingR, mlVAR, phytools, rEMM, skewMLRM, stream
bssn, Clustering, ClustImpute, ctpm, demu, jackstraw, mbkmeans, moanin, opGMMassessment, saeME, Spectrum, tidybins
Cluster.OBeu, diceR, MultIS, OMICsPCA, R3CPET, uHMM
ComparisonCR, Epi, PBIR, riskRegression, tidycmprsk
biospear, combi, demography, EventPointer, joineRML, RPPASPACE
ascii, assertive.types, BiocCheck, CodeDepends, fc, foreach, globals, lintr, manipulateWidget, markmyassignment, MonetDB.R, MonteCarlo, msqrob2, multcomp, packager, pkgmaker, PopED, pryr, Rcwl, RStoolbox, simmer, sloop, svTools, targets
Coinprofile, DCA, DGM, easier, glycanr, GmAMisc, hipathia, infercnv, lefser, matchMulti, microbiomeMarker, MicrobiotaProcess, MKpower, mrMLM, mrMLM.GUI, NADA2, nlnet, NPC, NSM3, party, permGS, rankdifferencetest, rankFD, rcompanion, shotGroups, StratifiedMedicine, wcep, wrappedtools
ADAMgui, ChromSCape, DecomposeR, EEM, factorMerger, flowcatchR, FlowSOM, getspres, IOHanalyzer, iSDM, Morpho, morphomap, plotKML, recolorize, RGCxGC, RNAmodR, takos, wavScalogram
anacor, animalEKF, autoimage, autonomics, BayesX, bea.R, bigMap, BiplotGUI, brickr, categoryCompare, ccrs, cds, ChemoSpec2D, circlize, CliquePercolation, cmsaf, cmsafvis, colorblindcheck, colorBlindness, colorist, colorpatch, ComplexHeatmap, ComplexUpset, concurve, condvis2, contiBAIT, copula, corr2D, cranly, DepthProc, DiffusionRgqd, DiffusionRimp, DiffusionRjgqd, dittoSeq, dragon, EcotoneFinder, effects, epicontacts, eRm, expectreg, forecast, ftsa, geiger, GeneTonic, genotypeR, getspres, ggcharts, ggfan, ggrasp, ggwordcloud, Gifi, gmoviz, gpairs, gwasforest, heatmaply, HH, hues, insurancerating, InterCellar, iNZightPlots, iNZightTS, IOHanalyzer, IRISFGM, IsotopeR, JOPS, ldaPrototype, lessR, levi, MapGAM, mapStats, mcmcplots, metafolio, munsell, netboost, NetOrigin, NMF, OpenRepGrid, optimization, pals, phyloregion, plotKML, Polychrome, pRolocGUI, qgraph, rainbow, randomcoloR, RavenR, RcmdrMisc, RegularizedSCA, roloc, rolocISCCNBS, RSurvey, semPlot, seriation, SGP, simplecolors, simPop, simsalapar, singleCellTK, smoothAPC, SPARTAAS, SpatialCPie, stray, SubgrPlots, subspace, swatches, tcl, Thresher, TIMP, trackeRapp, TraMineR, TraMineRextras, TreeDist, treemap, TreeTools, ucie, vcd, ViSiElse, visTree, vivid, wheatmap, whomds, xaringanthemer
abstractr, AdhereRViz, ChromSCape, cmsaf, coveffectsplot, debrowser, discoveR, dragon, eechidna, elementR, Factoshiny, GeneTonic, ggedit, ggExtra, ggquickeda, hwordcloud, InterCellar, IOHanalyzer, iSEE, iSEEu, loon.shiny, memery, miniMeta, PhyloProfile, plotGrouper, polaroid, predictoR, pRolocGUI, Prostar, psichomics, ReDaMoR, Repliscope, RtutoR, shinypivottabler, ShinyQuickStarter, shinystan, singleCellTK, snahelper, SOMEnv, subscreen, TCGAbiolinksGUI, wilson, xROI
addreg, asbio, BINtools, biogram, cdmTools, CDVineCopulaConditional, cem, ChAMP, CloneSeeker, CorrBin, cultevo, DESnowball, DoE.base, DoE.MIParray, eatRep, ERSA, GMPro, graphTweets, isocir, klaR, label.switching, lllcrc, lspartition, MCDA, MCMCprecision, mgss, miclust, mixAR, monocle, netDx, ordinalForest, pcds, pcIRT, phytools, psychonetrics, qualCI, rpcdsearch, sBIC, ScorePlus, SOAs, TensorClustering, TopicScore, treespace, TSCAN, visualFields
blastula, conflr, DCEtool, emayili, gt, huxtable, mailmerge, roxygen2, shiny, spelling
acebayes, DynNom, HyRiM, relatable, specmine
Arothron, coseq, ggtern, gmGeostats, itraxR, metamicrobiomeR, MRPC, omicplotR, QFASA, scone, simmr, vdar, zoid
AssocAFC, bigQF, ccdf, CKAT, DR.SC, EDFtest, famSKATRC, fdaACF, ghcm, GMMAT, hrt, ICSKAT, kangar00, kernelPSI, KnockoffScreen, KSPM, MAGEE, MAPITR, MDMR, meta, MiRKAT, MTAR, MVLM, nethet, nonnest2, pairkat, POSTm, qtlpoly, rqt, shotGroups, skedastic
doolkit, envi, fieldRS, imcRtools, lisaClust, migraph, nichevol, rangemap, schex, spicyR
anybadger, apisensr, archetyper, cloudml, cognitoR, datapackage.r, dccvalidator, discoveR, DIZutils, dragon, fdapaceShiny, FielDHub, golem, gwpcormapper, InterCellar, MicrobiomeProfiler, microservices, moodleR, multiSight, predictoR, ProPublicaR, prrd, regexTestR, repana, ReviewR, rsqliteadmin, sparklyr, tableschema.r, TCA, tensorflow, tfruns, tripr, viewpoly, wpm
ChromSCape, cvCovEst, influential, RaceID, scPCA, staggered
bivgeom, bivquant, BSL, cascsim, cds, ClustImpute, CompAREdesign, CopulaCenR, copulaedas, cylcop, depcoeff, drought, EFDR, ExtremalDep, ExtremeRisks, flood, gamCopula, GJRM, gnn, good, gremes, mobirep, multinma, mvnormalTest, nvmix, Omisc, PAsso, pgee.mixed, PortRisk, qad, qrng, scBFA, sgee, surrosurv, survivalMPLdc, svars, tailDepFun, WINS, zipfextR
AppliedPredictiveModeling, autoBagging, ExplainPrediction, miRNAss, QWDAP, semiArtificial, snap
BatchQC, BinOrdNonNor, biospear, BNrich, bootnet, boral, cape, carSurv, cate, clipper, clustrd, CopulaCenR, corHMM, covequal, cpvSNP, CytoML, debCAM, deepgmm, dnapath, ERP, esaBcv, FADA, flowClust, flowUtils, FoReco, fspe, GGMnonreg, GhostKnockoff, GOSim, GWpcor, gwpcormapper, HSPOR, idm, IRCcheck, iTOP, jackstraw, knockoff, lfa, list, lvm4net, lvnet, lymphclon, M3C, MCMCglmm, MetaIntegration, miRspongeR, mixOmics, mlVAR, modnets, mogsa, MultiVarMI, netassoc, netgsa, NetOrigin, nowcasting, parma, PathoStat, pcalg, pcev, penalizedSVM, perARMA, pfica, pivmet, psychonetrics, qgraph, r4ss, ratematrix, relaimpo, REndo, rmgarch, RMTL, RNGforGPD, SAMtool, SCCS, seedCCA, segMGarch, SEMgraph, semPlot, SEPIRA, SimTimeVar, SLBDD, snm, sparsediscrim, sparsevar, spduration, StabilizedRegression, subselect, TOAST, ttScreening, vampyr, VARshrink, varTestnlme, wux, xLLiM
Doscheda, MLRShiny, MLRShiny2, STAT, STAT2
artMS, aslib, BasketballAnalyzeR, bayesGAM, bigtime, bioOED, BNSP, CHETAH, CINNA, cogena, COINr, coMET, coseq, DaMiRseq, dynRB, echarts4r, EcotoneFinder, esATAC, evaluomeR, ExPanDaR, fabMix, factorstochvol, fdcov, frechet, GmAMisc, GoodmanKruskal, grapesAgri1, HPiP, jSDM, LDLcalc, ldsep, mastif, metaseqR2, miceRanger, mirTarRnaSeq, mixKernel, ModelMap, MOFA2, MultivariateAnalysis, NADfinder, NetworkToolbox, OMICsPCA, PhenStat, PLNmodels, polyPK, proBatch, RclusTool, rexposome, rnaEditr, RNASeqR, rstatix, RUVcorr, scDataviz, scRNAtools, shinyr, SIAMCAT, SLEMI, Statsomat, TestDimorph, uHMM, veccompare, YAPSA
AirSensor, auk, BayesSPsurv, cmsafvis, covidregionaldata, cranly, echarts4r, eurostat, giscoR, GSODR, idbr, mapSpain, MazamaSpatialUtils, oxcgrt, psData, regions, rwunderground, socialmixr, wcde, wdpar, weed, xSub
animalcules, goodpractice, GRANBase, mdapack, pkgnet, SMARTp
AgroR, AirSensor, alevinQC, andurinha, anomaly, barcodetrackR, BASiCS, bayefdr, bayes4psy, BayesMallows, benchdamic, bigstatsr, biogrowth, bp, BPRMeth, brainflowprobes, branchpointer, bridger, bruceR, CATALYST, causact, ccdf, cdcatR, CellMixS, CHETAH, CIMTx, CiteFuse, ClinicalUtilityRecal, clustifyr, ClusTorus, colorBlindness, conos, conserveR, cosinor2, CoSMoS, CountClust, CovidMutations, crops, cTRAP, cylcop, CytoGLMM, cytometree, dabestr, DAMEfinder, DEGreport, disaggregation, dittoSeq, DR.SC, dragon, epcc, EpiNow2, epos, ESTER, ethnobotanyR, EWCE, ExploreModelMatrix, fairadapt, FitUltD, flashlight, foodingraph, foreSIGHT, FRASER, gg.gap, gggap, ggpubr, ggResidpanel, granulator, graper, gWQS, harmony, healthcareai, healthyR, healthyR.ts, HiLDA, HuraultMisc, iai, IHWpaper, ILoReg, inTextSummaryTable, isomiRs, ITNr, KMunicate, lvmisc, mbRes, mdthemes, Melissa, memery, memoria, MesKit, metacoder, metapower, MetaVolcanoR, microplot, miloR, mlergm, MMUPHin, MOFA2, moveVis, MQmetrics, multilevelTools, musicatk, MutationalPatterns, neutralitytestr, OMICsPCA, oolong, opitools, ORFik, pathviewr, patientProfilesVis, PCAtools, periodicDNA, phemd, PhenotypeSimulator, phylosamp, pipeComp, plinkQC, promethee123, psrwe, pulsedSilac, qad, qsort, rabhit, RavenR, RCAS, scatr, scImmuneGraph, seqcombo, Seurat, sigminer, singleCellTK, sleepwalk, spatialLIBD, specr, ssMousetrack, survivalAnalysis, TADCompare, TarSeqQC, TcGSA, telefit, text, tidyMicro, TITAN2, TooManyCellsR, TreeDiagram, UMI4Cats, umx, valse, vanddraabe, vici, virtualPollen, visR, VplotR, wiggleplotr, yaps
autohd, bigQF, famSKATRC, highMLR, jstable, MAGNAMWAR, mlmm.gwas, multisite.accuracy, MXM, RVFam
adjustedcranlogs, beginr, deepdep, packageRank, Visualize.CRAN.Downloads
bwsTools, Crossover, designr, OPDOE, spsurvey
clinDataReview, clinUtils, connectwidgets, DT, gprofiler2, gwpcormapper, leaflet, parcoords, plotly, RagGrid, sigmajs, threejs, tsibbletalk
aopdata, bcdata, bold, brranching, chirps, citecorp, ckanr, dams, discgolf, duckduckr, elastic, galah, geobr, geojsonio, geojsonlint, getlandsat, gfonts, ghql, gistr, handlr, hereR, jaod, magmaR, microdemic, mstrio, nasapower, natserv, nsapi, openadds, opencage, osfr, pangaear, postlightmercury, rATTAINS, rbace, rbhl, rbison, rcitoid, rcol, rcoreoa, rcrossref, rdatacite, rdryad, rerddap, rgbif, rgovcan, ritis, rnoaa, rorcid, rphylopic, rplos, rredlist, rsnps, rvertnet, sofa, solrium, spocc, taxize, traits, tremendousr, vcr, viafr, webmockr, wikitaxa, worrms, zbank
ALTopt, apTreeshape, bivquant, BNSP, calibrator, clusteredinterference, coga, dbmss, dks, downscale, DRAYL, dvmisc, ei, equivalenceTest, fMultivar, GAS, GB2, GPCMlasso, highfrequency, ICAOD, inctools, MCMCglmm, MIRES, MMDCopula, MWright, NetSci, NonNorMvtDist, np, OBASpatial, ODS, planar, pooling, Power2Stage, powerTCR, PowerTOST, ProFit, QGglmm, RABR, skedastic, spNetwork, statsr, SurvDisc, tailDepFun, TCIU, tseriesEntropy, UPCM, vines, WLinfer, WR
C50, dendroTools, LDLcalc, rminer, soilassessment, tsensembler
CausalKinetiX, CenBAR, elasticIsing, enetLTS, FWDselect, GRNNs, KRMM, l1spectral, mogavs, robCompositions, RSAlgaeR, SCtools, sprm
ecpc, fairml, filling, kantorovich, LavaCvxr, MaximinInfer, PlackettLuce, Rdimtools, Riemann, SIHR, WRI
asremlPlus, eda4treeR, growthPheno, imageData, MultBiplotR
causalPAF, CausalQueries, dagwood, episensr, ggdag, SEMgraph
arenar, auditor, ceterisParibus, drifter, EIX, fairmodels, localModel, modelDown, modelStudio, oncrawlR, rSAFE, shapper, triplot, vivo
behaviorchange, changepoints, Cluster.OBeu, collapsibleTree, directotree, filterNHP, forestry, galah, gimme, HCD, justifier, LACE, nonlinearICP, prof.tree, radiant.model, randomForestSRC, RFpredInterval, rock, rocTree, SACCR, scAnnotatR, scClassifR, starvz, UniprotR, voronoiTreemap, webchem
E4tools, EMAtools, gesttools, psData, rties
baytrends, CityWaterBalance, countyfloods, EGRET, nhdplusTools, waterData
bayestestR, correlation, effectsize, ggstatsplot, parameters, performance, report, see, sjPlot, statsExpressions
Andromeda, apache.sedona, basedosdados, bcdata, childesr, ckanr, dbglm, dcmodifydb, geospark, immunarch, implyr, lazysf, mdsr, msPurity, NoRCE, Organism.dplyr, palmid, pointblank, qst, RClickhouse, ReviewR, rfishbase, sergeant, shinyNotes, sparklyr, sparklyr.flint, sqliteutils, sqlscore, synaptome.db, taxadb, taxizedb, tidyhydat, tidyverse, validatedb, VicmapR, wordbankr
AFM, Biopeak, celda, CIDER, CiteFuse, CLONETv2, CluMSID, conclus, cordillera, DDoutlier, dPCP, eventstream, FORTLS, funtimes, geva, LOMAR, maotai, metaCluster, miRSM, MOSS, openSkies, optimalFlow, ParBayesianOptimization, pguIMP, preciseTAD, rescue, smotefamily, snap, stream, synr
DAISIE, DAMOCLES, nodeSub, PBD, SADISA, secsse
animalEKF, briskaR, cccd, cholera, DatabionicSwarm, dialectR, EPP, expp, geometr, ggvoronoi, grapherator, GWSDAT, highriskzone, interp, meditate, MFHD, mistyR, muHVT, MultBiplotR, phonR, ProjectionBasedClustering, rLiDAR, spatstat.geom, spdep, spsurvey, stampr, Umatrix, VARMER, visualFields
BasketballAnalyzeR, BiBitR, CALANGO, CellTrails, ChAMP, CHETAH, CINNA, Cluster.OBeu, conos, consensusDE, DAPAR, elaborator, factoextra, GeneTonic, GlobalAncova, GOpro, GSEAmining, HCD, heatmaply, HGC, ILoReg, InterCellar, ldaPrototype, mappoly, Mercator, metaprotr, mFD, Momocs, multiClust, OmicInt, onemap, pagoo, PhosR, pRoloc, rabhit, rainette, rSAFE, tidyHeatmap, tsibbletalk, ViSEAGO, visxhclust, YAPSA
BBEST, carfima, CEGO, ConsReg, DMCfun, DstarM, FuzzyStatProb, IDE, KSPM, Luminescence, mrf, phenex, prodest, Riemann, ROI.plugin.deoptim, rrscale, SPOT, svars, trawl
apollo, BPmodel, cccrm, ctsem, doBy, gpuMagic, iccCounts, mirt, nCopula, neuralnet, nlstac, OEFPIL, QBAsyDist, regmedint, RGCCA, rsq, seeds, Sim.DiffProc, xgxr
attachment, available, badger, biokNN, cffr, citation, codemeta, cranlike, cyclocomp, DataPackageR, DBItest, depigner, details, devtools, do, dockerfiler, document, downlit, dynutils, fledge, fusen, golem, goodpractice, GRANBase, jetpack, microservices, packager, personalr, pkgbuild, pkgdepends, pkgdown, pkgload, rcmdcheck, rextendr, rhub, roxygen2, roxygen2md, rstantools, testthat, usethis
AGread, ANOVAShiny, ANOVAShiny2, atable, BlanketStatsments, catfun, CGPfunctions, dad, DescrTab2, DescToolsAddIns, drugprepr, epifitter, epiGWAS, gerbil, GmAMisc, gpuMagic, ILoReg, jack, miceRanger, morphomap, pointRes, ProAE, rcompanion, robin, rties, SCOPE, SEIRfansy, Semblance, smvgraph, SSHAARP, tabxplor, TipDatingBeast, uwo4419, wiseR, xgxr
asbio, AssetPricing, asteRisk, bdynsys, biogrowth, bioinactivation, briskaR, capm, CausalKinetiX, CollocInfer, covid19.analytics, DAISIE, DAMOCLES, DDD, deGradInfer, diversitree, dMod, doremi, DSAIDE, DSAIRM, dynr, ecostatscale, epcc, EpiDynamics, epifitter, EvolutionaryGames, evoper, flexsurv, gauseR, geiger, httk, hypergeo, idmodelr, INSPEcT, isobxr, lemna, MGDrivE2, miaSim, microPop, microsamplingDesign, mizer, mkin, morse, nhm, nLTT, odeGUTS, odin, PBD, pCODE, phaseR, pksensi, pomp, readsdr, RLumModel, rodeo, RPANDA, rstpm2, rties, secsse, seeds, sensobol, simode, soilassessment, spdynmod, stagePop, StrathE2E2, streambugs, takos, TimerQuant, TIMP, tseriesChaos, ubiquity, ZeBook
eoffice, Fgmutils, jsmodule, MCPModPack, MedianaDesigner, rrtable, takos
activPAL, AHM, aMNLFA, AmpGram, anyLib, BEACH, beastier, biospear, bisectr, BloodCancerMultiOmics2017, BrailleR, BUMHMM, CancerGram, cartools, changer, cogena, combiroc, coronavirus, covid19italy, covid19sf, covid19swiss, D2MCS, dartR, DataPackageR, datr, easypackages, elementR, fairness, FedData, fusen, GCSscore, githubinstall, gscaLCA, hlaR, IMD, INDEED, LDNN, link2GI, MazamaCoreUtils, mdapack, MetID, microsamplingDesign, miscset, modelDown, multimorbidity, netmhc2pan, neurocInstall, newsanchor, nmadb, oppti, outsider.base, OVtool, PathoStat, personalr, pkgverse, poio, populationPDXdesign, psdr, qcapower, rapbase, rcompendium, rdomains, rdoxygen, Rmmquant, roxygen2md, RtutoR, SCEM, SpaDES.addins, srnadiff, teachingApps, testthis, thinkr, understandBPMN, wru
ConsReg, cops, CSTE, diffusion, DynTxRegime, garma, matie, npcs, reReg, sklarsomega, stepPenal
caMST, cfda, communication, contiBAIT, dtpcrm, flowr, LMest, maat, processR, StratigrapheR, SubgrPlots
actel, behaviorchange, bioCancer, bsem, causact, cohorttools, consortr, critpath, escalation, GE, GNET2, gSEM, heuristicsmineR, hhcartr, HydeNet, irtrees, justifier, lavaanPlot, muir, netSEM, petrinetR, piecewiseSEM, poolfstat, PRISMA2020, prismadiagramR, PRISMAstatement, processanimateR, processmapR, radiant.model, Rage, randomForestSRC, RavenR, Rcwl, RFpredInterval, rock, rocTree, seminr, simmer.plot, ttgsea, umx, VAExprs, ViSEAGO, vtree
actel, behaviorchange, cohorttools, hhcartr, justifier, netSEM, PRISMA2020, rock, seminr, umx, vtree
autostats, baguette, bayesmodels, discrim, finetune, flipr, garchmodels, MachineShop, modeltime, modeltime.resample, rules, stacks, tidymodels, tune
dials, DiceOptim, DiceView, DoE.wrapper, GPareto, hetGP, minimaxdesign
aRchi, grf, LSDsensitivity, mistral, moko, ParBayesianOptimization, pGPx, SAVE, TAG, tuneRanger
biovizBase, iNZightPlots, pals, ternvis, tmaptools
NMproject, provExplainR, ttdo, unitizer, vdiffr, waldo
autocogs, biosurvey, clusterability, DAPAR, fpc, GateFinder, LSDsensitivity, mousetrap, multimode, PoDCall, rosetta, scClassify, scone, shazam, Spectrum, ufs
AlphaPart, BasketballAnalyzeR, CoSMoS, foreSIGHT, htsr, kernelPhil, prevR, QCAtools, reReg, rreg, survSens
CDSeq, censcyt, CorrBin, GUniFrac, HMPTrees
biomod2, ecospat, ENMeval, gbm.auto, GmAMisc, maskRangeR, MinBAR, NicheBarcoding, phyloregion, plotKML, PopGenReport, red, SDMPlay, SDMtune, sdStaf, SSDM, wallace, zoon
clifford, freealg, hyper2, spray, stokes
liayson, mistyR, optinterv, ORdensity, StempCens
distrDoc, EDOIF, genlogis, isobar, logcondens.mode, meteR, miCoPTCM, openPrimeR, qqconf, RcmdrPlugin.TeachStat, RobExtremes, RobLox, RobRex, ROptRegTS, scMerge
distrDoc, GJRM, nanop, openPrimeR, RcmdrPlugin.TeachStat, RobExtremes, ROptRegTS
fable, fable.ata, fable.prophet, fabletools, ggdist, posterior
GeneralizedHyperbolic, NormalLaplace, SkewHyperbolic, trelliscopejs, VarianceGamma, ztpln
base.rms, cutoff, ggDCA, ggrisk, modelROC, msig, nomogramFormula, set
atable, BaalChIP, BayesNetBP, fdANOVA, genotypeR, HRM, miclust, MIPHENO, pseudorank, Rphylopars, ScottKnott, synlet, TukeyC
HelloRanges, jetpack, orderly, prozor, qlcMatrix, sevenbridges
atmopt, DoE.MIParray, ExpertChoice, minimaxdesign, pid, support.CEs
envi, funGp, fxTWAPLS, hwep, kergp, LWFBrook90R, sparrpowR, sphunif, updog, vmeasur
autoMrP, BANDITS, bestNormalize, BSL, bumphunter, chickn, clustcurv, condSURV, Counterfactual, CovSelHigh, dcanr, distinct, ellipticalsymmetry, envi, ewoc, exuber, fabisearch, gbts, gratis, gsynth, hwep, hybridModels, ILoReg, lcc, Mediana, MedianaDesigner, metaplus, midasml, momentuHMM, mplot, ORdensity, PADOG, randomLCA, RobGARCHBoot, robmixglm, robust2sls, SC3, SGP, skpr, sparrpowR, SPONGE, SSDL, survidm, updog, varclust, WebGestaltR, zGPS.AO
clinDR, clustDRM, dosedesignR, LRcontrast, uniReg
adductomicsR, atakrig, autostsm, bagged.outliertrees, bayNorm, betapart, BMTME, cdcatR, CENFA, ConR, DepecheR, E4tools, eicm, ENMeval, exuber, ezCutoffs, FourWayHMM, gofCopula, gscaLCA, IDSL.IPA, IDSL.UFA, ILoReg, iprior, lcc, LEGIT, M3C, MatrixMixtures, minimaxdesign, msPurity, nimbleCarbon, preciseTAD, purgeR, pwrEWAS, rcarbon, rrepast, rTLS, scBio, SenTinMixt, smam, speaq, SPUTNIK, starvars, transcriptogramer, TREXr, tsmp
BARIS, biomartr, bipartiteD3, CANSIM2R, clusterProfiler, DiagrammeR, ELMER, etl, fishualize, GeneAnswers, imager, imgpalr, materialmodifier, mdsr, nCov2019, NEONiso, neonUtilities, PharmacoGx, pkgfilecache, RadioGx, recount, RKEELjars, RSwissMaps, rtrek, scMappR, sketcher, stationaRy, sublime, TCGAbiolinks, TCGAbiolinksGUI, ToxicoGx, Xeva, yarn
dendroTools, dfoliatR, GCSscore, iadf, mbr, measuRing, MtreeRing, TRADER
DelayedRandomArray, DropletUtils, FunChisq, fwildclusterboot, greeks, GridOnClusters, PCAtools, scran, TraRe
AgroR, AgroReg, beadplexr, CATALYST, Doscheda, drfit, ec50estimator, envalysis, ezec, GRmetrics, MEDME, seedreg, staRdom, stressaddition, synergyfinder, VDAP, WindCurves
cohorts, forecastML, MicrobiotaProcess, rFIA, tidyverse
CellTrails, dialectR, DTWBI, dtwSat, DTWUMI, MarketMatching, mtconnectR, NNS, sarp.snowprofile.alignment, soundgen, ssMousetrack, TSclust, tscR, TSdist, warbleR
censo2017, mfdb, neonstore, rfishbase, starwarsdb, taxadb
aCRM, APML, mvdalab, polyreg, SCCS, SortedEffects, traineR
AgroR, FSA, MultBiplotR, multiclassPairs, RTNsurvival, visxhclust
airGRteaching, AirSensor, antaresViz, bayesmove, BETS, chronicle, coefplot, dsa, DWBmodelUN, lfstat, loadflux, MIMSunit, modchart, NMproject, prophet, PWFSLSmoke, RavenR, RchivalTag, rPraat, rpredictit, seasonalityPlot, seasonalview, shinipsum, shinyML, shinystan
airpart, allelematch, BioNERO, eclust, ENmix, GeneTonic, GWENA, linkcomm, MEAT, methylclock, miRSM, MODA, MRPC, netboost, RAMClustR, RITAN, spatialHeatmap, TimeSeriesExperiment, ViSEAGO
babelwhale, dyndimred, dynfeature, dyngen, dynparam, dynplot, dynwrap, GillespieSSA2, lmds, SCORPIUS
baguette, biomod2, BPRMeth, bujar, CausalGPS, cmaRs, ecm, gbts, healthyR.ts, invacost, LDLcalc, nlnet, pre, rbooster, SSDM, tsensembler
discoveR, kerastuneR, mitch, predictoR, regressoR
AneuFinder, CONFESS, envoutliers, ftsa, PCRedux
adventr, DAMisc, Deducer, GLMpack, packDAMipd, SemNeT
bruceR, modelbased, multifear, psycho, report, see, sjPlot, sjstats, statsExpressions
adventr, atable, condir, Counternull, dabestr, flowGraph, IPDFileCheck, mbir, multifear, psyntur, regtomean
AgroReg, baycn, CellBarcode, coveffectsplot, ggcleveland, ggrisk, heatmaply, mobr, plotGrouper, RTNsurvival
BayesCTDesign, FamEvent, mlt.docreg, rriskDistributions, surrosurv
brainKCCA, bujar, chemmodlab, CSFA, DCA, epoc, LINselect, PepSAVIms, rospca, scPCA, SOPC, sparseLDA
adnuts, animalEKF, anipaths, AppliedPredictiveModeling, BayesianTools, celltrackR, convoSPAT, corregp, crlmm, dampack, ei, FactoMineR, FisherEM, flowClust, GMCM, HMMextra0s, IsotopeR, jlsm, lessR, Linnorm, lvm4net, MANOVA.RM, mcmcse, MEclustnet, metaSEM, mixOmics, MNM, ModStatR, MorphoTools2, mt, multifluo, NPflow, optimalFlow, pca3d, phenoTest, plot3logit, ratematrix, scatterD3, SciViews, smacof, soc.ca, specmine
broom, cliff, clock, cuda.ml, dabestr, dbplyr, devtools, distributional, distributions3, dm, dplyr, dtplyr, EDOIF, epocakir, fastRG, forcats, furrr, grates, hms, i2extras, incidence2, keras, learnr, luz, metaconfoundr, pillar, pins, plumber, quid, recipes, rsample, shiny, slider, sortable, sparklyr, testthat, tibble, tidyr, tidyselect, tidyseurat, tidySingleCellExperiment, tidysmd, tidySummarizedExperiment, torch, trendeval, tsibble, vctrs, workflows
airpart, apeglm, BEDASSLE, methylKit, rld, scShapes, sfaR, SNSequate
agriTutorial, AgroR, ARTool, augmentedRCBD, bruceR, dataquieR, distdichoR, eda4treeR, ibd, inti, jmv, JWileymisc, LinkHD, LMMstar, mi4p, piecewiseSEM, qusage, seedreg, SimplyAgree, sjstats, statgenGxE, statgenSTA, Superpower, truthiness
Compositional, elhmc, extremis, glmc, maczic, spearmanCI
BayesianTools, jordan, lorentz, MM, multivator, onion, splmm
define, metaplot, nonmemica, spec, yamlet
aSPC, CircMLE, Compositional, EDMeasure, fAssets, GiniDistance, kpcalg, linkspotter, mgc, miRLAB, miRSM, MVN, MXM, pgraph, PhyloProfile, Statsomat, TDAkit, VariableScreening
autoBagging, Autotuner, biogram, bnclassify, clustifyr, deepMOU, DTWBI, DTWUMI, einet, EvaluateCore, FSelector, funModeling, ggsom, hilbertSimilarity, Informeasure, ldamatch, miRLAB, msu, netSmooth, oclust, PINSPlus, prefeR, rcosmo, sabre, SCEnt, schex, sincell
AnnuityRIR, CellTrails, elementR, epidecodeR, eva, FMAdist, GenHMM1d, GeomxTools, GWEX, mem, NADA2, OVtool, PSS.Health, ramr, simPop, smam, SWMPrExtension, VTShiny
granulator, nanostringr, PSS.Health, pubh, RSurveillance, spectacles
catfun, CMShiny, CohortPlat, CTAShiny, morse, PROBShiny, pubh, RSurveillance
btergm, EpiModel, ergMargins, ergmito, fergm, RDS, statnet
bayesnec, downlit, flair, histry, IRkernel, jmvconnect, knitr, learnr, multiverse, opencpu, portfolioBacktest, rmarkdown, testthat
cape, climwin, DEEVD, evtclass, ExtremalDep, extremeIndex, ExtremeRisks, extremeStat, extremis, flood, GJRM, IDF, INQC, intamap, lmboot, lookout, metafuse, mev, mvPot, PWMEnrich, RecordLinkage, ROlogit, rSHAPE, rtdists, SimCorMultRes, tsxtreme
actuar, bbreg, ccrtm, frailtyEM, SenTinMixt, Temporal
affinitymatrix, AlphaBeta, autoMFA, biClassify, BinaryEPPM, BMTAR, BSBT, carcass, CompareCausalNetworks, complexplus, control, corHMM, CountsEPPM, CovTools, cragg, cSEM, ctmcd, ctmm, ctsem, DAMOCLES, dce, DDD, DescTools, diffudist, diffuStats, dlbayes, evolqg, FMradio, GeneTonic, HDtest, IFAA, IPCAPS, jlsm, KoulMde, KSPM, lymphclon, madness, marked, markovchain, MCL, mixComp, MSGARCH, msm, mstDIF, netcom, netcontrol, NetworkRiskMeasures, PCMBase, pfica, phytools, popdemo, powerplus, QUALYPSO, rags2ridges, ragt2ridges, RAINBOWR, refitME, RRRR, saeME, SBmedian, SCGLR, sfcr, SISIR, skedastic, slm, spant, spatialreg, spdep, SPONGE, svars, switchnpreg, VariableScreening, varjmcm, VIRF, WRI, WSGeometry
adaptDiag, bayesnec, BayesTools, bellreg, BFpack, BPmodel, convdistr, cylcop, deepMOU, eseis, FMAdist, FRASER, GenHMM1d, ghypernet, grabsampling, iZID, jfa, kairos, LDATS, mixdir, proDA, prophet, RoBMA, simIReff, sklarsomega, spTimer, Surrogate, TCIU, trend, univariateML
BrailleR, CSGo, fergm, fontHind, fontMPlus, ggalt, hrbrthemes, OenoKPM, quanteda.textplots, spreadr, tidytidbits, tvthemes, waffle
MOTE, multifear, neatStats, psychReport, psyntur, pwr2ppl, truthiness
bibliometrix, Biopeak, CINNA, conclus, CytoGLMM, DAPAR, disto, fmf, GEOexplorer, ggheatmap, immunarch, InterCellar, LinearDetect, metaCluster, MSstatsLiP, musicatk, OMICsPCA, PhageCocktail, powdR, RclusTool, rKOMICS, RNASeqR, sejmRP, statgenHTP, statVisual, SurvHiDim, tidyMicro, wilson
adiv, bibliometrix, CAinterprTools, cellmigRation, CINNA, ClustBlock, CSFA, DaMiRseq, DAPAR, denoiseR, factoextra, FactoInvestigate, fdm2id, fmf, GDAtools, GeneGeneInteR, ggfacto, GraphPCA, HistDAWass, HotellingEllipse, inti, mdapack, mFD, mimi, missMDA, MLGL, multiblock, OMICsPCA, OTrecod, packMBPLSDA, padma, pcaBootPlot, powdR, RclusTool, rexposome, rKOMICS, RNASeqR, RSDA, RVAideMemoire, soc.ca, SPARTAAS, tetraclasse, uHMM, visualpred, wilson
audrex, decisionSupport, lambdaTS, NSM3, pathviewr, proteus
cliapp, downlit, pillar, prt, pylintR, ricu, seecolor, stoRy, tibble, tidyseurat, tidySingleCellExperiment, tidySummarizedExperiment, waldo, xpectr
brickr, distributional, imgpalr, pavo, plothelper, prismatic, scales, thematic, tweenr
adductomicsR, CEMiTool, ClustAssess, cogena, cstab, disto, geva, heatmap3, hierGWAS, HierPortfolios, hypervolume, iheatmapr, ILoReg, infercnv, Linnorm, maotai, MetaCyto, MetProc, MLGL, mousetrap, MRPC, msPurity, NPflow, pagoda2, pinbasic, propr, RAMClustR, scGPS, SpatialVx, vanddraabe, visxhclust, VoxR
BayesianFROC, bnpa, causalweight, conText, deepdive, DMCFB, drf, framecleaner, GenMarkov, gscaLCA, MplusAutomation, NeuralSens, psyntur, tidyvpc
BIEN, briskaR, ebirdst, GapAnalysis, naturaList, NLMR, prioritizr, raceland, rasterDT, siland, SUNGEO, tabularaster
irtreliability, lavacreg, metaplus, mixAK, MultiGHQuad, nlmixr, randomLCA, robmixglm, robustlmm, rstpm2
composits, DeLorean, fGarch, monocle, oposSOM, pcalg, psichomics, sincell, TSCAN
cachem, dipsaus, htmltools, keyATM, rpymat, shidashi, shiny, shinymeta, trampoline
betapart, CEDARS, CEGO, CelliD, cTRAP, disto, DysPIA, ffbase, fgsea, fy, GAPGOM, grattan, heims, hutils, IDF, install.load, ITNr, Kernelheaping, LilRhino, networkR, ParamHelpers, phangorn, PMwR, polyRAD, psichomics, quanteda, rabhit, Rogue, Signac, signatureSearch, SpaDES.tools, TeXCheckR, text2map, TreeSearch, TreeTools, tsdb, TSGS
citecorp, dams, rATTAINS, rcitoid, rorcid, webmockr
BLCOP, ChIPseqR, FarmSelect, iClick, Irescale, jackstrap, MARX, modeest, MTS, sfaR, sicegar, StableEstim, SuperPCA
APAtree, cati, ecospace, hillR, pez, RAM, Select, STEPCAM, SYNCSA
adass, anacor, BayesOrdDesign, CausalKinetiX, Compack, CSTE, dynr, EBCHS, Ecfun, ExtremalDep, FADPclust, fCCAC, fdaACF, fdaMocca, fdANOVA, flars, flowStats, ftsa, FunChIP, FuncNN, GPFDA, iWISA, IWTomics, KFPCA, mixedClust, pcdpca, pCODE, PerFit, PING, puls, PupillometryR, refund, Rfssa, robCompositions, sasfunclust, SCCS, slasso, SLFPCA, srp, stfit, T4cluster, trackeR, UMI4Cats, warpMix
FADPclust, FiSh, FuncNN, goffda, GPFDA, PCRedux, puls, slasso
fdadensity, fdapaceShiny, fdaPOIFD, fgm, frechet, ftsa, KFPCA, SLFPCA, WRI
admix, bayesbr, beam, carSurv, CosW, crossmeta, DEP, DNLC, ERP, FitHiC, HDMT, IHW, IHWpaper, LANDD, meshr, MixTwice, NetworkToolbox, nlnet, oposSOM, OVESEG, qgraph, rags2ridges, ragt2ridges, rnmamod, Rtpca, SecKW, SimSeq, SinIW, TanB
BGData, bootSVD, crlmm, Haplin, IsoGene, IsoGeneGUI, LOMAR, MAGAR, MinimumDistance, oligo, oligoClasses, omicwas, RAMClustR, rmgarch, SFtools, symDMatrix
baRulho, eseis, MixfMRI, pmultinom, qusage, SuperGauss, warbleR
AcuityView, AFM, briskaR, EBImage, ICvectorfields, imagerExtra, mcmcse, oreo, rtrend, runstats, sazedR
cvar, ftsa, gscreend, GWEX, IndexConstruction, irtDemo, L2DensityGoFtest, ludic, mixAR, MTS, segMGarch, SLBDD, univariateML
ADPclust, astrochron, autoFRK, autoimage, aweSOM, BallMapper, BayesLCA, BayesMRA, BayesNetBP, bayesPop, biClassify, Biolinv, bioRad, bipartite, biwavelet, bkmr, BMRMM, BPEC, ccTensor, chillR, ciftiTools, ClimDown, cmR, cmsaf, cmsafops, cmsafvis, CompRandFld, ConR, convoSPAT, cope, corr2D, demu, DesignCTPB, distantia, DNAshapeR, DSsim, earlywarnings, EGRET, envi, ETAS, etasFLP, expectreg, fastLaplace, fdasrvf, fence, foreSIGHT, fsbrain, funData, gainML, gapfill, gateR, GEOmap, georob, geospt, goeveg, GPFDA, GPvecchia, hero, hglasso, hht, Hmsc, iCNV, infraFDTD.assist, JOPS, landsepi, letsR, lgcp, LICORS, LMERConvenienceFunctions, ltsk, mappoly, mclcar, metR, ModelMap, MOLHD, mousetrap, mrbsizeR, MRFA, Mulcom, NCutYX, nnTensor, nucim, oceanmap, OCNet, OptimaRegion, osmose, PEIP, pepStat, plsgenomics, popsom, prevR, qat, ramps, rcage, RGISTools, rhcoclust, RNAinteractMAPK, RNCEP, rNOMADS, RPANDA, RsimMosaic, rworldmap, scBio, scDD, Semblance, sincell, singleCellTK, soilphysics, spant, sparrpowR, sparseBC, SpatialExtremes, spatialLIBD, SpatialVS, SpATS, spatsurv, spBayesSurv, SpectralMap, spmoran, stilt, StMoMo, stocc, SurvCorr, telefit, TFARM, TideCurves, topologyGSA, treespace, Umatrix, vectorwavelet, vein, vote, warpMix, wavScalogram, WRTDStidal, wsyn
adehabitatMA, autoFRK, DeepBlueR, filehashSQLite, FindMyFriends, nat, tikzDevice, zooimage
BiocFileCache, dir.expiry, keyring, mistyR, pins, pkgcache, pkgdepends, rebook, txtq
amt, AnnuityRIR, bayNorm, binnednp, CalibratR, cascsim, censcyt, COCOA, conf, Dpit, EGAnet, EnviroPRA, EpiEstim, evtclass, fasstr, FitUltD, fitur, FMAdist, GMZTests, ICcalib, infercnv, insurancerating, Kernelheaping, kindisperse, myTAI, NADA2, openPrimeR, parmsurvfit, PERFect, phenesse, PhitestR, PredictionR, SCRIP, SeqNet, Seurat, simPop, sojourner, splatter, SPsimSeq, ssdtools, STI
AurieLSHGaussian, biclust, bnem, bootcluster, dtwclust, EPP, fdm2id, miclust, mnem, semiArtificial, TMixClust, Xplortext
betareg, CONFESS, CountClust, CytoGLMM, distributionsrd, fmerPack, fpc, GOSim, lpme, Mercator, miQC, RobMixReg, sBIC
CopulaCenR, Countr, cyclomort, educineq, hesim, mixcure, mlt.docreg, MNB, packDAMipd, parmsurvfit, rocTree, surv2sampleComp, SurvGSD, vsd
augmentedRCBD, autostats, compareGroups, concurve, crosstable, DescrTab2, eoffice, EpiReport, ftExtra, GenomicSuperSignature, interactionR, inTextSummaryTable, kfa, MCPModPack, MedianaDesigner, microplot, onbrand, presenter, processR, repmod, rrtable, soc.ca, SWMPrExtension, ubiquity, warabandi, webr, WordR, ztable
GPoM, MatrixExtra, pbdMPI, recometrics, recosystem, rsparse
biogrowth, bioinactivation, bioOED, capm, cellmigRation, ConsReg, growthrates
dief, eatRep, geocmeans, HDSpatialScan, hierGWAS, hierinf, InterCellar, microSTASIS, PROreg, SetMethods, sigQC, smvgraph, tastypie
adamethods, Anthropometry, aRchi, atakrig, autoFRK, bapred, BayesNSGP, bigdatadist, CAST, cccd, cicero, cmsaf, cmsafops, crmReg, customizedTraining, densityClust, DepecheR, DSWE, ECoL, EmbedSOM, evclass, evclust, exdqlm, fpcb, funtimes, gainML, GpGp, GPvecchia, gstat, GWmodel, hextri, Hmsc, hybridEnsemble, ider, imbalance, KCSKNNShiny, KNNShiny, ks, LICORS, LilRhino, metamer, miceRanger, missRanger, MOEADr, msImpute, nntrf, OkNNE, outForest, PINSPlus, pmlbr, pRoloc, RaceID, RaSEn, rliger, sambia, scgwr, Sconify, shattering, SmartMeterAnalytics, smotefamily, spamtree, spmoran, stray, supercompress, TDA, trafo, unbalanced, uwot, varrank, VoxR, xkcdcolors
Eagle, InteractiveComplexHeatmap, jsTreeR, shiny, shinyChakraUI, shinyFeedback, shinySelect, shinyToastify
adventr, animalcules, animaltracker, apyramid, autostats, bibliometrix, brinton, bruceR, bupaR, burnr, calendR, causact, ccostr, CellaRepertorium, CGPfunctions, cheese, chorrrds, ChromSCape, clustringr, cocktailApp, codebook, CohortPlat, ComPrAn, CoNI, correlationfunnel, cpsvote, crosstable, dabestr, DAPAR, datos, DCPO, describedata, DescrTab2, descstat, dfoliatR, easyalluvial, ecochange, edeaR, elaborator, ENMTools, epikit, explore, ezplot, factorMerger, fcaR, fedmatch, fedup, ffp, finalfit, fipe, forestecology, framecleaner, gapclosing, gemtc, genogeographer, gfilmm, GGally, ggdag, ggfacto, ggstream, glancedata, glmmfields, glmSparseNet, gtsummary, haven, healthyR.ai, healthyR.ts, HiLDA, iNZightTools, iNZightTS, iotables, IRexamples, kayadata, lactater, lipidr, lmeresampler, magclass, matchmaker, mbRes, metabolic, metaconfoundr, microbiomeExplorer, migest, miRetrieve, mlfit, modeltime, modeltime.gluonts, modeltime.resample, MOFA2, mshap, multinma, naniar, NanoMethViz, nevada, ngsReports, noaastormevents, Omixer, opitools, OutliersO3, owidR, palaeoSig, parcats, partition, plot3logit, pollster, prcr, prettyglm, processmapR, protti, r2dii.plot, rbenvo, RCT, RSDA, rtsVis, safetyCharts, scImmuneGraph, scipub, SCnorm, scoringutils, SEERaBomb, sense, sfcr, simlandr, simplecolors, simplevis, sitar, snap, soc.ca, stevemisc, suddengains, survivalAnalysis, survParamSim, SWTools, SynthCast, tabxplor, testcorr, TextForecast, tidycat, tidycomm, tidync, tidyndr, tidysynth, tidytidbits, tidyverse, timetk, Tplyr, truthiness, twoxtwo, UCSCXenaShiny, umiAnalyzer, unheadr, unpivotr, wcde, weed, wrappedtools
AEDForecasting, ATAforecasting, autostsm, autoTS, bayesforecast, BETS, beyondWhittle, bfast, bmgarch, CausalMBSTS, composits, ConsReg, cricketr, decomposedPSF, dsa, EEMDelm, eemdTDNN, EventDetectR, fDMA, ForecastComb, ForecastTB, fpp2, GeomComb, gratis, grattan, hpiR, iClick, imputeTestbench, imputeTS, its.analysis, KarsTS, knnp, lfl, lineartestr, matman, memochange, midasr, MLRShiny, MLRShiny2, modeltime, MortalityGaps, mrf, MSGARCHelm, msltrend, nortsTest, nullabor, odpc, OOS, PH1XBAR, PortalHacienda, portalr, predtoolsTS, PrInCE, PSF, RcmdrPlugin.RiskDemo, rcrimeanalysis, robets, RTL, SBAGM, ScottKnottESD, seastests, seer, SLBDD, spduration, stlARIMA, stlELM, stlTDNN, stR, sutteForecastR, sweep, TCIU, Tcomp, TimeSeries.OBeu, timetk, TrendSLR, TSANN, tsBSS, TSclust, tsDyn, TSF, tsfeatures, tsoutliers, TSPred, tsSelect, TSstudio, tsutils, tsviz, WaveletANN, WaveletArima, WaveletGARCH, WRTDStidal
acmeR, Amelia, aweSOM, basifoR, BETS, BiBitR, conmet, deco, Deducer, DescToolsAddIns, dynRB, easyr, EffectLiteR, expss, fSRM, GLMpack, graph4lg, Hmisc, importinegi, intsvy, kutils, LOGAN, maptools, memapp, nhdR, pewdata, prevR, psidR, psychTools, r.blip, R2MLwiN, RALSA, RcmdrMisc, rdhs, read.dbc, retistruct, rio, RNHANES, ropercenter, Rsagacmd, rsatscan, RStata, satscanMapper, SDEFSR, SemNetCleaner, Sofi, SPARTAAS, superb, synthpop, taxlist, vegtable, whomds
airpart, baggr, BayesCACE, catmap, causalPAF, chest, CPBayes, Gmisc, multifear, rADA, statVisual, TNBC.CMS
graphframes, mlflow, sparklyr, sparkxgb, tfestimators, tfio
automagic, datacleanr, distreg.vis, explor, ggThemeAssist, glmtrans, jaggR, lambda.r, MBNMAdose, multiverse, mustashe, npcs, pbixr, rainette, RaSEn, Rd2roxygen, RFormatter, rscc, schtools, ScriptMapR, shidashi, shinyChakraUI, snahelper, splashr
epcc, memapp, midasHLA, oncrawlR, OpenRepGrid.ic, packagefinder, presenter, regtomean, visvow, vote, XNAString
AER, alpaca, ARTP2, augSIMEX, bamlss, bayesbr, bbreg, bdynsys, bellreg, betareg, BiDimRegression, bife, BinaryEPPM, BiProbitPartial, BiSeq, BLPestimatoR, BNSP, canceR, cbq, CDatanet, cdfquantreg, clusteredinterference, Countr, CountsEPPM, crch, cvam, dat, DCchoice, dfidx, DirectEffects, Disequilibrium, dreamerr, dtp, EdSurvey, esreg, estimatr, estprod, ewoc, ExtremeBounds, factiv, fdaMixed, feisr, FENmlm, FlexReg, fplot, frontier, fwildclusterboot, gcmr, ggquickeda, glmertree, glmx, greport, HBglm, hdm, iml, inferference, isni, ITRLearn, ITRSelect, iva, ivfixed, ivmodel, ivmte, ivpanel, ivprobit, ivreg, ivregEX, jmcm, lagsarlmtree, LARF, lfe, LMest, LMMELSM, LongCART, metabomxtr, metapack, metR, mhurdle, midasr, MIMOSA, MIRES, missDiag, mixpoissonreg, mlogit, model4you, moult, MST, mvctm, nardl, networktree, nparMD, npmv, oaxaca, OncoBayes2, OneSampleMR, palmtree, pammtools, panelr, partykit, pglm, plm, plsRbeta, polywog, pre, PResiduals, psychomix, psychotree, QAIG, qmix, Ravages, RBesT, RCBR, rddtools, REndo, rmdcev, sampleSelection, sarima, SCGLR, sfaR, sglg, ShiftShareSE, sigInt, spBayes, spsur, table1, thsls, tobit1, tosls, tram, TriDimRegression, trtf, ttt, varian, YPBP, YPPE, Zelig
bayesnec, biogrowth, CAGEr, CDatanet, dformula, dLagM, econet, emdi, factorMerger, hettx, logistf, metR, moderndive, perturbatr, POV, psyntur, qte, SightabilityModel, smicd, vannstats, vcrpart
adductomicsR, beadplexr, bootcluster, clustrd, coca, conclus, conjoint, dann, DIscBIO, fdm2id, immunarch, IPCAPS, Linnorm, MEGENA, MineICA, MLInterfaces, MMUPHin, MorphoTools2, NIMAA, nullabor, OMICsPCA, pathfindR, RaceID, robCompositions, RPANDA, scone, semiArtificial, SPARTAAS, stream, truh, tspmeta, uSORT
DCSmooth, esemifar, forecast, LongMemoryTS, LPM, memochange, sutteForecastR, TSF, tsfeatures, WaveletANN, WaveletArima, WaveletGARCH
autostats, presenter, tidybins, TidyConsultant, validata
daewr, IAcsSPCR, minimaxdesign, pid, simrel, SOAs
addinsOutline, AlpsNMR, ambiorix, basedosdados, batata, batchtools, biocthis, biomartr, blastula, boxr, butcher, cabinets, campfin, ceramic, cheatsheet, ChromSCape, contentid, cvap, cwbtools, daiR, datacleanr, dataspice, depigner, devtools, disk.frame, dlr, dockerfiler, downloadthis, ech, etl, eurocordexr, exampletestr, fidelius, framecleaner, frenchdata, gargle, geouy, golem, gt, heapsofpapers, HubPub, iheiddown, ijtiff, indiedown, InterCellar, ISAnalytics, isobxr, jinjar, languageserver, latexdiffr, ldaPrototype, LFApp, litteR, luz, mailmerge, mapscanner, mdsr, megadepth, metaboData, MFSIS, mlflow, modeltime.gluonts, modeltime.h2o, mudata2, namer, NanoMethViz, neo4jshell, oncrawlR, orderly, osfr, packager, packer, personalr, piggyback, pins, piwikproR, pkgdown, pointblank, precommit, prodigenr, projects, rATTAINS, RCy3, reportfactory, reprex, retroharmonize, rfacts, ropenblas, rsqliteadmin, rstudio.prefs, sass, shinyFiles, shinymeta, ShinyQuickStarter, socviz, spatialrisk, Spectra, starter, stickr, SymbolicDeterminants, tarchetypes, telemac, testthis, texPreview, textdata, tidywikidatar, tor, torchaudio, torchdatasets, torchvision, usethis, virtuoso, workflowr, xml2relational, ymlthis
disk.frame, epwshiftr, fastverse, hdd, hkdatasets, jagstargets, nhdplusTools, NxtIRFcore, ORFik, prt, qtl2fst, qtl2pattern, raveio, readabs, ricu, scanMiRApp, standartox, tidyfst, tidyft
ciuupi, ciuupi2, D3partitionR, DeLorean, discSurv, hpoPlot, manifestoR, networkreporting, RcppEigenAD, saeSim, sqliter, translate
AlpsNMR, amapGeocode, baguette, BatchGetSymbols, bayesmove, bigdist, ceRNAnetsim, cfbfastR, ConfusionTableR, cort, CSGo, disk.frame, elevatr, fipe, flowGraph, foieGras, GetBCBData, grainchanger, gtfs2gps, hoopR, idmodelr, jstor, mistyR, nflfastR, nflseedR, nlrx, onemapsgapi, OOS, photosynthesis, ppcseq, ppseq, reval, rsample, sapfluxnetr, SCtools, seer, sigminer, simhelpers, skewlmm, sovereign, spatialTIME, synergyfinder, tealeaves, text, tidyqwi, tsfeatures, wehoop
analysisPipelines, AnnotationHubData, AnVIL, AWR.Kinesis, BEclear, BiocParallel, CopywriteR, CSUV, cytominer, DataPackageR, doremi, EpiNow2, evoper, fbRads, genBaRcode, GenoGAM, glmSparseNet, goldi, GWASinspector, idr2d, infercnv, IsoformSwitchAnalyzeR, ISOpureR, MACPET, MazamaCoreUtils, md.log, MIGSA, nprcgenekeepr, pkgnet, previsionio, psborrow, psidR, PureCN, QFASA, rly, SmartMeterAnalytics, targeted, TCA, timelineR, TPP, uptasticsearch, VennDetail, wearables
alookr, aroma.affymetrix, aroma.core, BatchGetSymbols, bayesmove, bistablehistory, bkmrhat, brms, ceRNAnetsim, cfbfastR, civis, Clustering, codalm, cSEM, CSGo, datapackage.r, delayed, dipsaus, disk.frame, dragon, drimmR, EFAtools, elevatr, envi, EpiNow2, EWCE, FAMoS, fastpos, fiery, fipe, flowGraph, foieGras, funGp, future.tests, fxTWAPLS, genBaRcode, GetBCBData, googleComputeEngineR, googleTagManageR, greed, greta, gsynth, gtfs2gps, gWQS, hoopR, hwep, idmodelr, IFAA, iml, infercnv, interflex, isoreader, JointAI, kernelboot, ldaPrototype, lidR, lmtp, LWFBrook90R, MAI, mcp, microSTASIS, mlr3, nflfastR, nflseedR, onemapsgapi, OOS, origami, photosynthesis, PLNmodels, ppcseq, ppseq, prewas, Prostar, PSCBS, qgcomp, qgcompint, rangeMapper, rBiasCorrection, refineR, reval, robotstxt, RTransferEntropy, scDiffCom, sctransform, seer, Seurat, shiny.worker, shinyrecap, sigminer, Signac, simhelpers, skewlmm, skpr, smoots, sNPLS, sovereign, sparrpowR, SPARSEMODr, spatialTIME, sperrorest, sphunif, startR, steps, synergyfinder, tableschema.r, tcplfit2, tealeaves, text, TKCat, TreeSearch, TriDimRegression, tsfeatures, TSstudio, updog, vmeasur, wehoop
AIPW, BAMBI, blavaan, codalm, cSEM, dipsaus, disk.frame, drtmle, EFAtools, EpiNow2, epwshiftr, forecastML, fundiversity, genBaRcode, geocmeans, gWQS, hackeRnews, hacksig, iml, kernelboot, keyATM, lava, lightr, MAI, mcmcensemble, mcp, microSTASIS, missSBM, mlr3, mrgsim.parallel, origami, pavo, phylolm, PLNmodels, prewas, QDNAseq, qgcomp, qgcompint, rangeMapper, rBiasCorrection, refineR, robotstxt, RTransferEntropy, scDiffCom, sctransform, semtree, Seurat, Signac, simfinapi, simglm, sims, smoots, sNPLS, solitude, SPARSEMODr, spatialwarnings, sperrorest, spNetwork, steps, targeted, tcplfit2, TSstudio, XNAString
EM.Fuzzy, FPV, Fuzzy.p.value, FuzzyLP, FuzzyNumbers.Ext.2, FuzzyStatProb, Sim.PLFN
ConsReg, datafsm, DistributionOptimization, dynplot, eicm, epinetr, EZtune, feamiR, FSinR, garma, gratis, gripp, IDSL.UFA, inlmisc, Jaya, kernhaz, LCAvarsel, MaxMC, metacoder, ppgmmga, psychonetrics, RMaCzek, triggerstrategy, TropFishR
Ball, bandit, CausalGPS, diversityForest, drpop, expose, glmdisc, mixcure, PAMpal, RPPanalyzer, scalpel, xpose4
AGD, BPmodel, childsds, DAMisc, DEsingle, distreg.vis, gamlssbssn, mixpoissonreg, QFASA, scRecover, sregsurvey, ugomquantreg, vasicekreg
AGD, asymmetry.measures, BPmodel, childsds, distreg.vis, gamlss.foreach, GJRM, ImputeRobust, list, mixpoissonreg, orders, powdist, PReMiuM, QFASA, rpql, scModels, sregsurvey, ugomquantreg, vasicekreg, ZIBseq
gamm4.test, lwqs, mgcViz, projpred, refund, voxel
BayesianTools, DHARMa, FamAgg, PopGenReport, pould
bigrquery, daiR, galigor, gmailr, googleAuthR, googledrive, googlesheets4, ReviewR, rgoogleads, rytstat
aurelius, autoMrP, biomod2, branchpointer, bst, bujar, crispRdesignR, DMLLZU, ebirdst, EnsembleBase, EZtune, gbm.auto, gbts, horserule, inTrees, IPMRF, LDLcalc, lilikoi, metaEnsembleR, MiDA, MLInterfaces, mob, mvGPS, paths, PSweight, regressoR, RSDA, scorecardModelUtils, SDMtune, spm, spm2, SSDM, statVisual, stepgbm, tsensembler, twang, twangContinuous, twangMediation, visualpred
CopernicusDEM, landmap, maskRangeR, MODISSnow, plainview, PlanetNICFI, popRF, pRecipe, terrainr
AlphaPart, CADStat, ccid, CISE, comato, consensusOV, deco, deGradInfer, elementR, GCPBayes, GeneticsPed, gmodels, GSelection, INQC, INSPEcT, LOST, metamicrobiomeR, MIPHENO, MLInterfaces, NetComp, oncoPredict, Pigengene, Plasmidprofiler, polySegratio, powerbydesign, ProteoMM, PWMEnrich, qat, QTLRel, r4ss, RavenR, rAvis, RKEEL, RNAinteractMAPK, rtematres, SEMgraph, SpidermiR, TabulaMurisSenisData, TBSignatureProfiler, TSmisc, weights, wux
crawl, enerscape, gen3sis, graph4lg, leastcostpath, marmap, memgene, movecost, poems, PopGenReport, red, rWind, samc, spDates, topoDistance
APCI, GEEmediate, geesmv, MCM, riskPredictClustData, spind, swgee, VariableScreening
aftgee, batchtma, CorrBin, Cprob, eventglm, geecure, GEint, ipw, IrregLong, jsmodule, jstable, MESS, MethylCapSig, MXM, seqest, SLTCA, spass, spind, swgee, wgeesel, Zelig
CovTools, dbcsp, influenceAUC, multiblock, PEIP, quadmatrix
dispRity, evobiR, FishPhyloMaker, hilldiv, hillR, hisse, nichevol, nodeSub, ouxy, pcmabc, pmc, Rarefy, ratematrix, Rphylopars, RRphylo, secsse, sensiPhy, treedata.table, treeplyr
hybridEnsemble, kernelFactory, nlrx, plsVarSel, TSGS
aba, arules, baguette, bfsl, broom, brulee, BVARverse, card, chest, cmstatr, coder, customsteps, DeclareDesign, DesignLibrary, did, distributional, dplyr, dr4pl, embed, estimatr, exuber, fabletools, factiv, fastai, flexsurv, FRASER, fwildclusterboot, geodimension, ggpmisc, healthcareai, huxtable, infer, infinityFlow, interactions, joineRML, jtools, keras, lmtp, lubridate, luz, marginaleffects, maxLik, mcmcr, mhurdle, mice, mixpoissonreg, modelsummary, modeltests, modeltime.ensemble, mpcmp, nlist, OUTRIDER, parsnip, plot3logit, plsmod, poissonreg, probably, qgcomp, recipes, ri2, Rsagacmd, rsample, rsimsum, rstatix, rules, shinymodels, sparklyr, SSLR, stacks, starschemar, textrecipes, tfdatasets, themis, tidylda, tidyposterior, tidypredict, tidytext, timetk, tobit1, TRMF, tsibble, tune, workflows, workflowsets, yardstick
basket, chillR, ConsReg, cops, crmPack, eulerr, gripp, hybridEnsemble, MaxMC, moko, netcom, nlrx, spatialrisk, TropFishR
AirSensor, cyclestreets, distanceto, fitbitViz, gtfsrouter, GWnnegPCA, GWpcor, gwpcormapper, MazamaLocationUtils, metro, opentripplanner, spotoroo, tidytransit, traipse, trip
antaresViz, bRacatus, mapping, MODIStsp, rmapshaper, rmapzen, sen2r, valhallr
echor, geojsonio, giscoR, leafem, leafgl, mapboxapi, mapboxer, mapdeck, otpr, RtD3, spectator, TargomoR
geophys, RFOC, rNOMADS, Rquake, RTOMO, s2dverification
archiDART, Arothron, BAT, bayesGAM, betapart, blackbox, cati, chebpol, ClaimsProblems, curvHDR, debCAM, DepthProc, DiceView, dispRity, EthSEQ, EvolutionaryGames, fundiversity, gMOIP, GWSDAT, hypervolume, iSDM, lidR, MBHdesign, mFD, minimaxdesign, Momocs, morphomap, mrfDepth, MultBiplotR, mvGPS, OptimaRegion, pavo, pdfCluster, ProjectionBasedClustering, quadmesh, retistruct, rForest, rLiDAR, RoundAndRound, STEPCAM, TCIU, tmle.npvi, treetop, ucie, Umatrix, VoxR
CensSpatial, landmap, osmgeosample, ParallelDSM, rcosmo, SDALGCP, StatDA
activatr, AirSensor, animaltracker, birdring, CCAMLRGIS, cffdrs, ClimClass, ConR, CoordinateCleaner, crimelinkage, CruzPlot, diveMove, echogram, ecocomDP, epiflows, fieldRS, flightplot, fuzzyjoin, fxTWAPLS, gaiah, GapAnalysis, geomerge, geonetwork, gfcanalysis, GPSeqClus, graticule, GWLelast, himach, iSDM, japanmesh, lakemorpho, letsR, m2b, marmap, metScanR, MinBAR, mobr, moveHMM, o2geosocial, PAMmisc, peacesciencer, places, poems, PWFSLSmoke, rbgm, red, rgeoprofile, rSPARCS, RStoolbox, rStrava, Rwtss, satin, skynet, SongEvo, SPARSEMODr, spherepc, stplanr, sugarbag, track2KBA, traipse, TrajDataMining, uavRmp, waver, ZipRadius
fledge, orderly, packager, rasciidoc, rcompendium, starter, usethis, worcs
bsub, cola, ComplexHeatmap, EnrichedHeatmap, gtrellis, InteractiveComplexHeatmap, pkgndep, reproducer, rGREAT, simplifyEnrichment, spiralize, YAPSA
blastula, cloudstoR, cyphr, ecmwfr, ecochange, mfdb, PhotosynQ, pksensi, pRecipe, RBitmoji, rdhs, ReactomeGraph4R, remoter, ropenblas, rtodoist, rwebstat, TKCat, togglr, traitdataform, vaultr, workflowr
easyalluvial, ethnobotanyR, immunarch, MutationalPatterns, projectR, scRepertoire
adventr, AirSensor, alevinQC, AlpsNMR, AntMAN, BasketballAnalyzeR, BGGM, bigPint, bootcluster, brinton, CARBayes, CARBayesST, CeTF, CINNA, citrus, CluMSID, clustrd, communication, conserveR, cyanoFilter, DescribeDisplay, discourseGT, EGAnet, ezEDA, finalfit, fingerPro, FPDclustering, GDAtools, ggbio, ggmcmc, GGMncv, GGMnonreg, ggPMX, ggquickeda, glancedata, greed, growthPheno, gsynth, HierDpart, ICtest, imageData, InflectSSP, isomiRs, ITNr, jmv, jsmodule, LANDD, MAINT.Data, MCbiclust, metan, mgcViz, mitch, MixtureMissing, mlergm, MRPC, NetworkChange, ORFik, OutliersO3, PAsso, PhosR, PopGenReport, psyntur, randomForestExplainer, rassta, rbioacc, robCompositions, rrr, rwty, scPipe, SeqSQC, SmartEDA, specmine, staRdom, statVisual, systemPipeTools, TNBC.CMS, TVTB, vidger, vivid, vortexR, WRSS
ArchaeoPhases, DDPNA, EnhancedVolcano, ggmsa, vivid
cleanTS, corona, Dune, dynaSpec, ferrn, ggpacman, karel, plotdap, simlandr, spinifex
cytomapper, dabestr, ggquickeda, ggrastr, insane, miloR, mshap, NACHO, NanoStringNCTools, scater, spotoroo, YAPSA
abseqR, ammistability, CIMICE, corx, cspp, EvaluateCore, itraxR, POMA
abseqR, AneuFinder, artMS, barcodetrackR, benchdamic, BloodCancerMultiOmics2017, CEMiTool, DEGreport, diffudist, discoveR, evaluomeR, EWCE, FindMyFriends, forestmangr, hierarchicalSets, iCellR, iheatmapr, Linnorm, migraph, MIGSA, missCompare, mosaic, MutationalPatterns, ngsReports, PhosR, Plasmidprofiler, PTXQC, qPLEXanalyzer, rabhit, rwty, SPARTAAS, spatialHeatmap, statVisual, superheat, TimiRGeN, triplot, visvow, Xplortext
ffp, lmeresampler, multinma, surveil, tidybayes
bamdit, BASiCS, bayefdr, dextergui, DiscoRhythm, jarbes, MSstatsQC, MSstatsQCgui, OmicInt, palmid, qad, reliabilitydiag, SCVA, SHAPforxgboost, SHELF, spotoroo
breathtestcore, deeptime, gggenes, inspectdf, metabolic, metacoder, modelplotr, plothelper, ribosomeProfilingQC, rnmamod, treemapify
akc, BayesianReasoning, Bchron, BindingSiteFinder, BTSPAS, circumplex, CKMRpop, dabestr, deeptime, dragon, dynplot, ferrn, flametree, FlowSOM, geneticae, GeneTonic, GGEBiplots, ggformula, ggmsa, ggpacman, ggraph, helixvis, HotellingEllipse, hypeR, IPV, metan, metaprotr, migraph, MQmetrics, NACHO, NeuralSens, NormalyzerDE, plinkQC, qcapower, Relectoral, rusk, RVenn, scatterpie, schex, scHOT, SHAPforxgboost, Signac, siland, SpatialCPie, statgenHTP, synergyfinder, tabularmaps, vissE, webr, Xplortext, xpose
MESS, mosaic, mosaicCalc, mosaicModel, transmem
autoplotly, baystability, clustcurv, conjoint, IMAS, IVAS, MSbox, netcom, omu, pagoo, proBatch, robCompositions, stability, statVisual
aplot, ggbreak, ggimage, ggtree, scatterpie
calendR, ggalignment, hexSticker, metabolic, RevGadgets
devtoolbox, flowGraph, ggfacto, ggiraphExtra, microhaplot, NanoStringNCTools, SpatialCPie, treekoR, vlda
changepoints, ecpc, FIT, higlasso, ICBioMark, MLGL, PhylogeneticEM, PRSPGx, sail
geneNetBP, MoTBFs, nethet, osmplotr, pcalg, pcgen, phylopath, SEMgraph, simPATHy, stablespec, TGS
activatr, AirSensor, anipaths, bioRad, BPEC, choroplethr, earthtones, epiflows, GADMTools, ggsn, hurricaneexposure, moveHMM, openSkies, PWFSLSmoke, RAM, rcrimeanalysis, rnrfa, SDLfilter, SensusR, sidier, SWTools, trackeR
dalmatian, mfa, missingHE, MixSIAR, PLMIX, rbioacc
BasketballAnalyzeR, BioNERO, CeTF, genBaRcode, phyloseqGraphTest, Pi
BioNERO, cmcR, deeptime, diffEnrich, FlowSOM, ggtreeExtra, miaViz, NeuralSens, plotdap, ProAE, statgenHTP, treeheatr, vivid
aplot, BasketballAnalyzeR, eoffice, foqat, ggbreak, ggimage, granulator, interflex, palmid, PDATK, plotgardener, RevGadgets, RLSeq, seqsetvis, singleCellTK, spatialHeatmap, VALERIE
CEMiTool, forestmangr, ggquickeda, methylclock, neutralitytestr, visa
ADAMgui, AnnoProbe, APCI, bayMDS, bdl, BiocOncoTK, BioNERO, BNPmix, CDSeq, CeTF, convergEU, corx, CovidMutations, crctStepdown, csa, cvCovEst, dasper, dataquieR, dfoliatR, did, digitalDLSorteR, diversityForest, dPCP, EGAnet, ELMER, ENMTools, enrichTF, entropart, epidecodeR, epigraHMM, factoextra, factorMerger, fastai, FlowSOM, FRK, FuncNN, GeneAccord, GenomicSuperSignature, gfoRmula, ggheatmap, ggquickeda, glmmSeq, grapesAgri1, greed, hilldiv, hJAM, HS, iCellR, iglu, immunarch, insane, InTAD, iPath, IRISFGM, jsmodule, JWileymisc, LinkHD, lpirfs, mappoly, MetaIntegrator, metaviz, MethReg, methylclock, miceRanger, microbial, missingHE, mpcmp, MQmetrics, MSPRT, MSstatsLiP, neatStats, ODER, onemap, orthogene, paramhetero, ParBayesianOptimization, PhosR, plotGrouper, powdR, promotionImpact, ptairMS, rfVarImpOOB, rKOMICS, rnmamod, rPACI, rrtable, rSAFE, RVA, scITD, SEIRfansy, SHAPforxgboost, ShellChron, sigminer, sismonr, SiteAdapt, spatialTIME, TADCompare, TargetDecoy, TCIU, TestGardener, TNBC.CMS, trawl, UCSCXenaShiny, UniprotR, VALERIE, vici, viewpoly, vmeasur, volcano3D, vsd, WINS
akc, apisensr, arulesViz, basket, CARlasso, ceRNAnetsim, CIMICE, CiteFuse, CKMRpop, clustringr, dce, dyngen, dynplot, enrichplot, fobitools, foodingraph, genBaRcode, ggdag, imcRtools, IRISFGM, LabApplStat, MEGENA, migraph, miloR, motifr, multinma, netcom, NetFACS, pathfindR, phylopath, POMA, ReactomePA, saotd, scClassify, scholar, scTreeViz, snahelper, spacejamr, specr, stminsights, vissE, whomds, wordgraph, wpa
barcodetrackR, bayesplot, BayesPostEst, Bchron, BGGM, CATALYST, CellMixS, CiteFuse, cRegulome, dextergui, dittoSeq, easyalluvial, escape, ethnobotanyR, exploratory, ezr, forestecology, GenomeAdmixR, gravitas, HistDAWass, jmv, MesKit, molic, mosaic, MQmetrics, nullranges, pulsedSilac, RADstackshelpR, rsimsum, scatr, see, Seurat, SHELF, SNPfiltR, spotifyr, SUMMER, TITAN2, trackeR, ufs
biotmle, ggpubr, iriR, jrt, mappoly, spiR, SPOTMisc, survtmle, UniprotR, vlda
decompTumor2Sig, genBaRcode, immunarch, memes, RCAS, Signac, transite
ADAMgui, ggpubr, ggstatsplot, microbiomeMarker, MicrobiotaProcess
autostats, cregg, decisionSupport, dotwhisker, ggquickeda, mosaic, scatr, tidypaleo
bruceR, cageminer, cleanTS, imputeTS, iNZightRegression, iNZightTS, lactater, mdthemes, OenoKPM, PhosR, ProAE, survminer
accSDA, AeroSampleR, amplican, ArchaeoPhases, autostats, AvInertia, BAwiR, CEMiTool, corral, curtailment, deepredeff, destiny, drhur, DuoClustering2018, edeaR, eechidna, fedup, fitbitViz, forestmangr, futureheatwaves, geouy, ggplotAssist, gppm, grabsampling, heuristicsmineR, immuneSIM, insane, IRexamples, JWileymisc, mcStats, mdthemes, missingHE, NanoMethViz, NanoStringNCTools, nima, obliqueRSF, OddsPlotty, pguIMP, ppgmmga, processmapR, psyntur, radsafer, RcmdrPlugin.KMggplot2, RevGadgets, rfm, RTCGA, RtutoR, scRNAtools, scruff, SLEMI, spacejamr, structToolbox, SWMPrExtension, updog, VisitorCounts, wildviz
AeRobiology, BatchQC, MetaAnalyser, MLInterfaces, NetworkChange, subspace
akc, GSEAmining, moodleR, palmid, rainette, SOMbrero, TextMiningGUI, vissE, wpa
BiocPkgTools, contribution, devtoolbox, ghee, mdapack, natmanager, piggyback, projmgr, rcompendium, stickr, usethis
BGVAR, bqror, dlbayes, factorstochvol, mcmcsae, mfbvar, NormalBetaPrime, PRSPGx, quokar, shrinkTVP, sparsereg
allcontributors, archivist.github, badgecreatr, BiocWorkflowTools, cabinets, changer, cheatsheet, DramaAnalysis, epivizrStandalone, git2rdata, gitdown, kirby21.base, mdapack, mlflow, NMproject, RcwlPipelines, rDataPipeline, RepoGenerator, ropenblas, shiny.info, spm12r, workflowr
BSL, cicero, CVglasso, detectR, ecoCopula, EGAnet, fsMTS, graphicalVAR, iDINGO, jointMeanCov, LUCIDus, lvnet, MatrixLDA, netgwas, nethet, NHMSAR, nutriNetwork, pgraph, POMA, psychonetrics, qgraph, robsel, robustcov, scout, sdafilter, sGMRFmix, shock, SILGGM, sparseMatEst, SparseTSCGM
GGMncv, mvMORPH, netgsa, PLNmodels, RPANDA, yuima
addreg, dce, ecoCopula, EdSurvey, gravity, groupWQS, inctools, logbin, miWQS, MWASTools, weitrix, wqs, zetadiv
iccCounts, lefko3, Maaslin2, muscat, twosigma
bsub, circlize, cola, ComplexHeatmap, GetoptLong, rim, spiralize
disk.frame, doFuture, furrr, future, future.apply, parsnip, sparklyr
BacArena, gromovlab, MCDA, Rata, sdcTable, xxIRT
ARpLMEC, estprod, extremeIndex, naivereg, OneSampleMR, PointFore, sfadv
CADStat, CytoTree, DepecheR, EasyDescribe, Linnorm, oii, papeR, PathoStat, spatialreg, spdep, spsur, tableone, TCA, uwo4419
arrangements, cgwtools, Clustering, ClusterR, CommEcol, cooccur, CVXR, distcomp, DPQmpfr, FLAME, FOCI, FunWithNumbers, homomorpheR, ICRanks, iterpc, jack, kantorovich, ldamatch, m2r, minimaxdesign, mvPot, nos, npsr, partitions, PMCMRplus, rbtc, RcppAlgos, robustrao, skedastic, spaMM, STraTUS, unifDAG, Zseq
CausalGPS, MetaCycle, perARMA, SCCS, VIRF
EstimDiagnostics, ETAS, fitur, lmomco, olsrr, scoringutils, spatstat.core, sure, WLinfer
apisensr, babsim.hospital, dccvalidator, discoveR, dragon, fdapaceShiny, FielDHub, gwpcormapper, InterCellar, MicrobiomeProfiler, multiSight, predictoR, regexTestR, regressoR, ReviewR, rsqliteadmin, spatialLIBD, tripr, viewpoly, wpm
basedosdados, bigQueryR, GCSConnection, googleAnalyticsR, googleCloudRunner, googleCloudStorageR, googleCloudVisionR, googleComputeEngineR, googleLanguageR, googlePrintr, googlePubsubR, googleTagManageR, MungeSumstats, ORTSC, searchConsoleR, text2speech
datazoom.amazonia, googlesheets4, mailmerge, tidyverse, trackdown
googleway, graphhopper, mapdeck, opentripplanner, osrm
bayesPop, bea.R, eAnalytics, MetaLandSim, mplot, nser, PrecisionTrialDrawer, RLumShiny, scmap, SPLINTER, wppExplorer
condvis2, lime, live, radiant.multivariate, recipes, simputation
cdmTools, Compind, DCA, EFAtools, EFAutilities, EMMAgeo, epca, fspe, fungible, jmv, kfa, mirt, mirtjml, mirtsvd, MultBiplotR, OpenRepGrid, qmethod, radiant.multivariate, traj, vampyr, whomds
a4Base, ABAEnrichment, affycoretools, ArchaeoPhases, artMS, ASSIGN, asymmetry, BAMMtools, BatchQC, bingat, Biopeak, BNPMIXcluster, boundingbox, BUScorrect, BUSseq, cancerTiming, cbaf, CDSeq, CellScore, cellTree, CHETAH, ChIPseeker, chromswitch, CINdex, CluMSID, CNVPanelizer, CoFRA, CoGAPS, cogena, colordistance, compcodeR, compEpiTools, CoNI, consensus, contiBAIT, corregp, corto, covid19.analytics, crmReg, crqa, DAPAR, debrowser, deco, DepecheR, DeSousa2013, DiffBind, DiffNet, DmelSGI, DNMF, DPBBM, eegc, EGAD, EGSEA, ENmix, erccdashboard, FAMetA, fDMA, flagme, Fletcher2013a, FLLat, flowCyBar, flowDensity, GDCRNATools, GeneOverlap, GOexpress, graphsim, HIREewas, HMP, HTqPCR, ideal, ImmuneSpaceR, indirect, infercnv, ionr, isomiRs, kissDE, KSEAapp, les, liayson, LineagePulse, M3Drop, MAIT, matie, metagene, metagenomeSeq, MetaIntegrator, MetaNeighbor, metaseqR2, methylPipe, MetProc, miRLAB, mitch, MLP, MLZ, mmabig, mogsa, momr, MoonlightR, msmsEDA, MSstats, MultBiplotR, NCA, nearBynding, netboxr, oneSENSE, optCluster, PAA, Patterns, phenoTest, piano, plotMCMC, poliscidata, polyPK, prider, proActiv, pwOmics, qat, quantable, r.jive, r4ss, RAM, RAMClustR, rcellminer, RcmdrPlugin.BiclustGUI, rdi, ReactomeGSA, Repitools, rexposome, rgsepd, RITAN, RNAdecay, RNAinteract, RobMixReg, ROCR, RPPanalyzer, SAMtool, scone, SCOPE, serieslcb, sesem, shapeR, shinyepico, sigQC, SingleCellSignalR, sourceR, spatialHeatmap, SpiceFP, SpidermiR, sRACIPE, STATegRa, STRINGdb, TFARM, tigre, TimiRGeN, TIMP, tmod, TopKLists, TransView, TraRe, Trendy, TSCAN, uSORT, vannstats, variancePartition, vulcan, washeR, wilson, yarn
famat, GWENA, netOmics, orthogene, RCAS, scMappR, UniprotR
bnmonitor, bnspatial, clipper, fgga, GGRidge, gmat, GmicR, gremes, rags2ridges, simPATHy, SourceSet, SPONGE, topologyGSA
arrayQuality, genomation, gmoviz, LowMACA, MethylAid, networktree, NMF, psica, quadmesh, quickPlot, RGraphics, rphylopic, seqHMM, SGP, SIAMCAT, sidier, silicate, simsalapar, SubgrPlots, treemap
BrailleR, colorBlindness, ggplotify, grapesAgri1, meme, multiDimBio, multipanelfigure, RGraphics, sigQC, trackr
arrayQualityMetrics, BrailleR, gridDebug, interactiveDisplay, plotROC, RGraphics
HyRiM, piecepackr, RGraphics, RIdeogram, SDAR
bestglm, DMRnet, geoGAM, naivereg, NVCSSL, PCLassoReg, refund, sparseGAM
altR2, artfima, aws, brr, copula, covsim, ctmm, diffpriv, distTails, Dpit, dti, ecd, energy, gamCopula, gbeta, GenEst, geospt, geosptdb, gmvarkit, HypergeoMat, mbbefd, mlmi, ModStatR, multIntTestFunc, palm, PlaneGeometry, pvaluefunctions, Raquifer, rtdists, semEff, sfaR, spatialwarnings, sphunif, uGMAR
coxrt, DSWE, fBasics, LocalControl, MetaLonDA, OmicsLonDA, timeSeq, TMixClust
AFM, atakrig, automap, covatest, EFDR, EnvExpInd, FeedbackTS, gmGeostats, hydroTSM, intamap, ltsk, mapsRinteractive, meteo, ParallelDSM, plotKML, prevR, psgp, rtop, spDates, spm, spm2, spup, STMedianPolish, SurfaceTortoise, synergyfinder, telemac, TUFLOWR, variosig, VARMER
BMRMM, datamart, HaDeX, iemisc, MetaDBparse, MplusAutomation, nflseedR, nmm, priceR, RITAN, rSQM, smbinning, SpecHelpers, Ularcirc, vietnameseConverter
covid19india, crimeutils, did2s, drhur, gtsummary, modeltime, omsvg, pointblank, regweight, skpr, tinyscholar, visR
amplican, bea.R, behaviorchange, BloodCancerMultiOmics2017, BoutrosLab.plotting.general, bp, BubbleTree, celda, CEMiTool, cobalt, colorBlindness, communication, condformat, cowplot, darksky, deeptime, dotwhisker, egg, FindMyFriends, GenVisR, geofacet, getmstatistic, GGally, ggalt, ggbio, ggExtra, ggforce, ggfx, ggh4x, gghalves, ggparty, ggplot2, ggPMX, ggpol, ggprism, ggraph, ggside, ggtern, ggupset, GOsummaries, gridExtra, hierarchicalSets, Hmisc, ichimoku, iglu, interflex, IWTomics, lemon, metaforest, metaplot, metR, mimager, MQmetrics, multipanelfigure, ncappc, nlirms, nmathresh, ormPlot, patchwork, patternplot, phantasus, pheatmap, Plasmidprofiler, plotGrouper, PropensitySub, PTXQC, rabhit, SparseBiplots, strvalidator, sugrrants, superheat, tableExtra, telefit, tidyLPA, tidySEM, timelineR, trackeR, treeDA, treeheatr, trelliscopejs, TRONCO, ufs, visR, waffle, xgxr
asbio, extremevalues, ie2misc, relMix, strvalidator
APML, healthyR.ai, lares, lazytrade, lilikoi, rsparkling, shinyML
applicable, autostats, baguette, brulee, card, cuda.ml, modeltime, parsnip, tabnet, tidycmprsk, tidymodels, tune, vetiver, workflows, workflowsets
CITAN, coMET, CRISPRseek, crisprseekplus, dataone, datapack, epos, GUIDEseq, GWASinspector, hhcartr, IPDFileCheck, Maaslin2, medicalrisk, nanotatoR, noah, packDAMipd, pkgndep, popsom, rankdist, ReinforcementLearning, rFSA, rgsepd, ribor, RITAN, sBIC, scPipe, sklarsomega, STRINGdb, tictactoe, TraRe, TrueSkillThroughTime, TSDT
adepro, asciiSetupReader, aweSOM, BEACH, bpnreg, casen, cesR, clinDataReview, clinUtils, codebook, crosswalkr, cspp, DAMisc, datadigest, dataMaid, dataReporter, DDIwR, describedata, DescrTab2, DHS.rates, Dire, duawranglr, eatGADS, ech, EdSurvey, elaborator, electionsBR, essurvey, ezpickr, ggplotgui, hildareadR, ImportExport, importinegi, iNZightTools, ipumsr, jsmodule, labelled, LearningStats, libr, memapp, misty, mitml, netCoin, packDAMipd, RcmdrMisc, rdhs, readit, recodeflow, retroharmonize, Rilostat, rio, ropercenter, RVA, sdcMicro, secuTrialR, skewlmm, tidyverse, uwo4419, vtable, webuse, xSub
animalEKF, bayesboot, BayesMallows, BayesMassBal, BayesPostEst, bpcs, ebmstate, EvidenceSynthesis, factor.switching, ggdist, HuraultMisc, mcmcOutput, MIRES, OBASpatial, optimalThreshold
curvHDR, rainbow, RChronoModel, RFpredInterval, SIBER, tRophicPosition, truelies
BatchQC, BayesianNetwork, CALANGO, debrowser, DegNorm, DiscoRhythm, GEOexplorer, ideal, ImmuneSpaceR, latentcor, metaseqR2, microbiomeExplorer, neatmaps, OUTRIDER, pagoo, pcaExplorer, scTensor, shinyepico, ViSEAGO, wilson
ambiorix, archetyper, blastula, cache, cape, diffEnrich, fusen, gitignore, golem, hlaR, kindisperse, moodleR, mustashe, nettskjemar, polite, precommit, r4lineups, RAINBOWR, regions, reticulate, retroharmonize, starter, UKB.COVID19, upstartr, weed
arrayQuality, autocogs, BASiCS, BasketballAnalyzeR, BayLum, bigPint, ChIPexoQual, DecomposeR, esetVis, flowCHIC, flowViz, ggcyto, ggplot.multistats, ggtern, hexSticker, hextri, iNZightPlots, MethylAid, openair, pandaR, pitchRx, plotluck, pRoloc, Radviz, rasterVis, rbokeh, schex, scone, som.nn, SpatialBall, twoddpcr, wbacon
ANOVAShiny, ANOVAShiny2, GISPA, memoria, microplot
AovBay, cTRAP, DAPAR, LDAShiny, MapeBay, mispitools, modchart, Prostar, psichomics, RKorAPClient
explor, knitr, questionr, rainette, rasciidoc
Andromeda, ari, cgmquantify, DBItest, dttr2, E4tools, eatGADS, edeaR, eplusr, feather, fitbitViz, haven, hmstimer, iglu, iNZightPlots, mctq, MEDITS, metro, mlfit, odbc, places, processmapR, progress, readr, readwritesqlite, RMariaDB, RPostgres, rwalkr, sonicscrewdriver, tibbletime, tidytransit, tidyverse, timetk, vroom
finch, PAMmisc, pangaear, rATTAINS, rcoreoa, rdryad, rerddap, rnoaa, taxizedb, traits
dlookr, epidemia, fontHind, fontMPlus, mdthemes, optedr, Rfssa, zGPS.AO
circumplex, compareDF, condformat, expss, GRANBase, Greg, Hmisc, nprcgenekeepr, packagefinder, rms, soc.ca, visualFields
AirSensor, crul, fauxpas, httping, microdemic
ambiorix, bea.R, beakr, biobtreeR, blogdown, boxr, BrownDog, bs4Dash, elementR, emuR, epitweetr, epivizrServer, fiery, ganalytics, igvR, IsoplotRgui, JBrowseR, jrc, MetaIntegrator, mlflow, opencpu, pagedown, phantasus, plumber, plumbertableau, RCyjs, rfigshare, routr, rStrava, rtweet, servr, shiny, shinyloadtest, shinytest, sleepwalk, spectrino, spotGUI, tfdeploy, VOSONDash, vosonSML, workflowr
netassoc, netgwas, nethet, nutriNetwork, sdafilter, sparsenetgls, SparseTSCGM, stminsights, UNPaC
acroname, BrailleR, spelling, TeXCheckR, textstem, tidytext
fy, grattan, heims, hutilscpp, readabs, TeXCheckR
affycoretools, arrayQualityMetrics, categoryCompare, DEXSeq, EGSEA, EnrichmentBrowser, FGNet, HTSeqGenie, imageHTS, ivygapSE, MLInterfaces, ReportingTools, rlc, RNAinteract, ShortRead
dycdtools, gumboot, hydroPSO, kwb.hantush, RSAlgaeR, SiteAdapt, VARMER
BASS, BayesFactor, brr, BSS, cnbdistr, fitODBOD, GB2, ModStatR, MomTrunc, sadists, TLMoments, TreeBUGS
mwTensor, RaceID, rliger, scITD, Seurat, vrnmf
autohd, cenROC, CopulaCenR, ICcalib, ICcforest, LTRCtrees, mable, SurviMChd
ellipticalsymmetry, fitHeavyTail, ICSShiny, ICtest, nethet, RNAinteract, TCIU
AcuityView, BioMM, boundingbox, cmcR, colocr, CropDetectR, epca, fmriqa, ForestTools, fractD, FWRGB, IMak, Irescale, LARGB, lidaRtRee, mand, materialmodifier, MtreeRing, multifluo, patternize, Rbgs, recolorize, rGenomeTracks, RPPASPACE, sketcher, smpic, SPUTNIK, TooManyCellsR, vmeasur, wal, WSGeometry
bioCancer, iemisc, RadialVisGadgets, radiant, radiant.basics, radiant.data, radiant.design, radiant.model, radiant.multivariate
DEP, lipidr, MatrixQCvis, polyPK, rexposome
audrex, cleanTS, EventDetectR, gimme, hpiR, imputeTestbench, jenga, lambdaTS, OOS, proteus, RamanMP, RiverLoad, SLBDD, specmine, tetragon, TrendSLR
ActFrag, binequality, binsmooth, DaMiRseq, educineq, electoral, GB2group, GGIR, gglorenz, grattan, gravitas, LymphoSeq, PolicyPortfolios, postGGIR, smicd, soundecology
autoBagging, BUS, ccrepe, cylcop, D2MCS, diceR, IDmeasurer, KarsTS, lilikoi, linkspotter, mfe, minet, multiSight, npsr, PAC, partition, PSSMCOOL, RJcluster, SIAMCAT, SPUTNIK, wkNNMI
arenar, corrgrapher, DALEX, drifter, localModel, modelStudio, rSAFE
configr, gh, GWASinspector, mlflow, raveio, virtuoso
bgsmtr, causalCmprsk, coxrt, KernelICA, mkin, rstan, rtkore, RxODE, TiPS, WLreg, WWR
bayestestR, correlation, datawizard, effects, effectsize, ggeffects, ggstatsplot, insurancerating, marginaleffects, modelbased, modelsummary, parameters, performance, psycho, psycModel, report, see, sjlabelled, sjmisc, sjPlot, sjstats, statsExpressions
BioNERO, bootcluster, CEMiTool, CINNA, econet, fcoex, hergm, ITNr, LANDD, linkprediction, lolog, motifr, phyloseqGraphTest, pkggraph, PubScore, whomds
edgebundle, EvolutionaryGames, GPFDA, OUwie, pcds, RCarb, SOMbrero, spreval, vprr
cta, eyelinker, MACPET, MaximinInfer, spacetime
ashr, bqror, carfima, GCPBayes, miWQS, OBASpatial
ICcforest, LTRCforests, mlearning, nlcv, optBiomarker, permimp, recipes, RecordLinkage, RTextTools, survcomp
BiocSingular, Cardinal, ccfindR, CelliD, ChromSCape, cola, conos, corral, DelayedTensor, denoiseR, destiny, dyndimred, epca, ERP, FEAST, fuser, harmony, HCD, hierBipartite, HIPPO, iasva, iGraphMatch, iSFun, jackstraw, KnockoffScreen, lmds, lolR, LSX, M3Drop, matter, MFPCA, miloR, mixedCCA, mixsqp, monocle, multiviewtest, NewWave, OmicKriging, pagoda2, PINSPlus, RaceID, randnet, recommenderlab, rescue, rliger, sccore, seqgendiff, Seurat, Signac, snifter, spant, sparrow, spathial, SPUTNIK, symphony, uwot
epoc, FairMclus, fdm2id, irrNA, jrt, LedPred, miclust, oolong, prcr, vortexR
envoutliers, extremeStat, GJRM, gnFit, IDF, MIGSA
admix, BOIN, gren, GSSE, isoboost, IsoGeneGUI, Keyboard, ORCME, PoPdesign, survELtest, titeIR
ggplot2, metR, osrm, potential, SpatialPosition, tanaka
CLME, comparison, IPWboxplot, isoboost, RDS
acc, astrochron, bayNorm, CDSeq, chicane, ClustVarLV, clustvarsel, combiter, datapackage.r, detectRUNS, detrendr, Dire, distantia, doFuture, doRNG, ecospat, eicm, eNchange, envi, EventPointer, fda.usc, fDMA, FMM, foreach, FSelectorRcpp, geoTS, gep2pep, GPM, GWPR.light, hdbinseg, HDCI, hiAnnotator, HIMA, hwep, Information, iterpc, itertools2, KScorrect, ldamatch, LEGIT, lgcp, LipidMS, logbin, logiBin, LWFBrook90R, mable, MAGNAMWAR, MarketMatching, mclustAddons, mistral, mojson, MSnID, MSPRT, mzID, NCA, neuroim, ormBigData, paleoTS, PAST, phenopix, polywog, productivity, prospectr, quantro, randomUniformForest, rcarbon, rcdk, RcmdrPlugin.FuzzyClust, REMP, robustBLME, RZooRoH, santaR, SAVER, scCB2, SCOR, segMGarch, semsfa, SGP, shazam, simr, skpr, sparrpowR, spatsurv, SPONGE, sta, tableschema.r, tigger, TRONCO, truh, turboEM, unsystation, updog, variancePartition, vectorwavelet, YaleToolkit, zebu
basket, betapart, bisque, combiter, detectRUNS, fDMA, glmm, liqueueR, polypharmacy, rcdk, telefit
BSSasymp, fICA, KernelICA, osd, SpatialBSS
autostats, BARIS, bayesrules, BFS, casen, cfbfastR, clockify, ConsRankClass, covid19india, DAMisc, dams, datazoom.amazonia, DCPO, drpop, eatRep, ech, eph, etl, excluder, fastRhockey, filebin, fitbitr, framecleaner, getLattes, HLMdiag, hoopR, IMD, influential, itraxR, lacrmr, mnis, modeltime, moderndive, nfl4th, nflfastR, otpr, presenter, protti, quid, rATTAINS, rfinance, spotifyr, squashinformr, tabbycat, threesixtygiving, tidybins, tidyndr, tidyquant, tidyREDCap, validata, wehoop, worldfootballR
blandr, jmv, jmvconnect, medmod, scatr, SimplyAgree, TOSTER, walrus
ausplotsR, AzureAuth, AzureKeyVault, firebase, googleCloudRunner, polished
AdhereR, bwimage, ceramic, colordistance, colorfindr, countcolors, EBImage, Ecfun, gazepath, geomorph, gexp, ggimg, gglogo, ggmap, googleway, gridtext, grImport2, HiveR, IFC, imager, ImaginR, imgpalr, imguR, IsoGeneGUI, latticeExtra, LeArEst, mapboxapi, materialmodifier, memery, minimaxdesign, Momocs, MtreeRing, OpenImageR, patternplot, phenopix, piecepackr, pixelclasser, qgraph, RanglaPunjab, rayimage, RclusTool, readbitmap, reporter, rosm, RPPASPACE, RsimMosaic, rtrek, RXKCD, shapeR, sketcher, Spaniel, spongecake, StereoMorph, tableHTML, torchvision, trackter, ursa, wal, xROI, zooimage
EML, geojson, geojsonio, googleway, nodbi
biocompute, cffr, clinDataReview, datapackage.r, geojsonlint, tableschema.r, TKCat
bigsimr, convexjlr, diffeqr, iai, phenofit, RTIGER
amanida, bridger, cheese, ChromSCape, codified, compareGroups, composits, DescrTab2, DiscoRhythm, div, dlookr, drhur, epitab, evaluomeR, ExPanDaR, flying, FlyingR, ggfacto, gnomonicM, grapesAgri1, GWASinspector, gWQS, HMP16SData, HMP2Data, hypeR, ibawds, IDSA, igate, InteractiveComplexHeatmap, IOHanalyzer, iotables, IPDFileCheck, LifeInsuranceContracts, marked, mdsr, midasHLA, MobileTrigger, modelDown, modelsummary, msig, OMICsPCA, phase1PRMD, postGGIR, prettyglm, PTXQC, puzzle, r4ss, RawHummus, rjdmarkdown, rosetta, safetyCharts, scan, sfcr, ShapleyValue, Statsomat, tab, tablet, tabxplor, ufs, umx, visR, visxhclust, wrappedtools
baggedcv, baggingbwsel, binnednp, L2DensityGoFtest, shazam, tvmediation
ANTs, chillR, earlywarnings, ecotraj, effectsizescr, funtimes, gimms, GWSDAT, lawstat, NADA2
autokeras, CRISPRseek, deepredeff, deepregression, digitalDLSorteR, downscaledl, embed, FuncNN, gnn, imageseg, iml, iSubGen, kerastuneR, LilRhino, ML2Pvae, ProcData, ruta, SCFA, snap, SPORTSCausal, SPOTMisc, tfaddons, tfprobability, TraceAssist, TSPred, utr.annotation
ABPS, ADImpute, ampir, aweSOM, BKPC, BPRMeth, brainKCCA, branchpointer, calibrateBinary, CIDER, classmap, clusterExperiment, CondIndTests, DA, DeLorean, DMTL, DynTxRegime, Ecume, fmf, fpc, fPortfolio, GeneGeneInteR, GeneralisedCovarianceMeasure, gkmSVM, GreedyExperimentalDesign, ITRLearn, kernelFactory, kernelPSI, KnowSeq, kpcalg, KRMM, ks, landmap, LDLcalc, MachineShop, MetaClean, microsynth, mikropml, mixtools, nlcv, oddstream, PCDimension, personalized, plsRcox, PredCRG, pRoloc, qrjoint, REMP, RISCA, Rmagpie, rminer, robCompositions, ROI.plugin.ipop, rres, RSSL, scAnnotatR, scClassifR, scPCA, scRecover, soilassessment, STGS, survivalsvm, SVMMaj, SwarmSVM, Synth, tboot, tidysynth, tsensembler, TSGS, tsiR, wearables
adegraphics, ATACseqQC, BayLum, BiplotGUI, CAGEr, CausalGPS, cholera, classInt, CoMiRe, compcodeR, condSURV, curvHDR, dearseq, diveMove, DRDRtest, DSWE, DVHmetrics, earlywarnings, FactoClass, FiSh, flowStats, flowViz, ftsa, ggalt, gplots, hdrcde, heatmaps, HiCcompare, hoardeR, HRW, IFC, IndexConstruction, INSPEcT, IWTomics, jocre, kamila, kdevine, kernplus, ks, localIV, lumi, Mercator, methylKit, mgcViz, miRcomp, NCA, Patterns, philentropy, prodlim, promotionImpact, quantdr, r2d2, ramwas, rassta, rcrimeanalysis, rddtools, reconsi, refreg, Rtrack, SCBmeanfd, SensoMineR, seqPattern, sesame, Seurat, shazam, shotGroups, sigQC, singleCellTK, siqr, spd, stpp, survcomp, survidm, synRNASeqNet, tofsims, TSclust, TSdist, viper
atom4R, ccmReportR, cloudstoR, d4storagehub4R, ecmwfr, epitweetr, geosapi, ocs4R, REDCapExporter, RKorAPClient, rstoat, rtodoist, togglr, wiesbaden, zen4R
MARSS, mbsts, networkTomography, partialAR, partialCI, sarima, tsPI, TSPred, walker
FamEvent, famSKATRC, fat2Lpoly, GENLIB, LCAextend, LRQMM, Mega2R, MESS, optiSel, paramlink, pedtools, ribd, RVFam, RVS, SimRVPedigree, skater
aRtsy, DaMiRseq, NoiseFiltersR, regressoR, rminer, RSDA, swfscMisc, traineR
agricolae, CLUSTShiny, DA, diceR, fingerPro, FPDclustering, MetaClean, MLDAShiny, MLDAShiny2
aweSOM, fdm2id, GenomicMating, ggsom, Mercator, multisom, optCluster, rassta, som.nn, SOMEnv, synoptReg, UNCLES
biosurvey, birdring, BMTAR, cdcsis, changepoints, curvHDR, diggit, DMTL, ecospat, feature, flowStats, goffda, GPareto, hdrcde, highriskzone, hypervolume, lg, logcondens, lsbs, MaskJointDensity, mobirep, motmot, multimode, Nebulosa, NMADiagT, nullranges, oddstream, openCyto, qch, rainbow, RandomCoefficients, raptr, refreg, rugarch, semiArtificial, simIReff, simlandr, simukde, smoothROCtime, sNPLS, SPARTAAS, starvars, stray, Surrogate, TEAM, ThresholdROC, tseriesEntropy, VIRF
cmstatr, EnviroPRA, EvaluateCore, ldamatch, LSDsensitivity, MSCsimtester, PMCMRplus, WeibullFit
BAMBI, BayesBinMix, BNSP, bpgmm, fabMix, PLMIX, psychtm
codebook, FAOSTAT, foodingraph, ggetho, micromapST, mtb, psygenet2r, scales, xgxr
broom.helpers, casen, cesR, codebook, crosswalkr, datazoom.amazonia, ech, ggformula, jsmodule, jstable, opalr, pollster, questionr, retroharmonize, RSDA, SEERaBomb, stevemisc, tableone, tidyqwi
ech, GB2, simPop, smicd, surveyplanning, surveysd, vardpoor, VIM
biogrowth, frair, greybox, LambertW, LindleyPowerSeries, LindleyR, Luminescence, mexhaz, POUMM, wmwpow
BayesMassBal, Bayesrel, bgsmtr, dlbayes, evidence, exdqlm, FourWayHMM, ftsa, kindisperse, lddmm, metaBMA, OBASpatial, PoDCall, PROBShiny, ProFit, pRoloc, rcage, sklarsomega, SMARTbayesR
bastah, Cascade, chemmodlab, chemometrics, FindIt, fsMTS, gencve, GGMselect, lassopv, mcb, NHMSAR, PACLasso, pathwayPCA, Patterns, perryExamples, plsRcox, RobMixReg, SelectBoost
blogdown, fiery, httpgd, httpuv, IsoplotRgui, OmnipathR, pagedown, plumbertableau, pool, promises, Prostar, quarto, retry, rRofex, shiny, websocket
admix, dynr, epiNEM, ggtern, HaDeX, ICBioMark, isotracer, lddmm, LongituRF, mSTEM, SplitKnockoff, StanMoMo, tidyMicro, tscR
adegraphics, AllelicImbalance, arrayQualityMetrics, bbsBayes, chipenrich, cNORM, DAAG, DAMisc, dosedesignR, epiNEM, flowViz, flowWorkspace, gamclass, GISPA, greport, Gviz, Hiiragi2013, Hmisc, hyperSpec, IFC, IsoriX, lessR, lfstat, MACSQuantifyR, MinBAR, mosaic, mptools, mt, nonmem2R, openair, Orcs, pems.utils, penDvine, phyr, qicharts, rasterVis, RcmdrPlugin.temis, remote, RNAinteract, sampSurf, Select, ShortRead, SpidermiR, stressr, Surrogate, tactile, tools4uplift, tTOlr, twang, twangMediation, varbvs, waterData
BuyseTest, ivsacim, LMMstar, pec, prodlim, Publish, riskRegression, SmoothHazard, timereg
bain, Bayesrel, BifactorIndicesCalculator, bmem, bnpa, bruceR, conmet, covsim, cSEM, detectR, discnorm, dmacs, EFAtools, EGAnet, ezCutoffs, faoutlier, gimme, gorica, IIVpredictor, IPV, jmv, JWileymisc, kfa, lavaan.shiny, lavaanPlot, lcsm, lsl, lslx, lvnet, matrixpls, MBESS, medmod, metaSEM, MIIVsem, misty, MonteCarloSEM, multilevelTools, nlsem, nonnest2, pompom, processR, PROsetta, pscore, psychonetrics, psycModel, pwr2ppl, qgraph, regmed, restriktor, rosetta, semdrw, seminr, semnova, semPlot, semptools, SEMsens, semTable, semtree, sesem, ShortForm, simstandard, thurstonianIRT, tidySEM, umx, unusualprofile, vampyr
AnnotationFilter, AOV1R, basecallQC, benthos, bioinactivation, c3, carpenter, chromswitch, cofeatureR, CollapseLevels, cpr, crosstalk, crplyr, datastepr, ddpcr, EpiModel, estprod, extdplyr, eyetrackingR, funModeling, ganalytics, geojson, gfilmm, gfilogisreg, gfiUltra, ggalluvial, ggloop, graph3d, gutenbergr, harrietr, heemod, HTSSIP, hurricaneexposure, hyperSpec, IAT, jqr, LAGOSNE, lidR, lifelogr, likelihoodExplore, metacoder, mockr, modchart, mosaicModel, MOSim, mvMonitoring, ncappc, networkreporting, nonmemica, observer, ompr, pammtools, PAutilities, perturbatr, photobiologyInOut, plotdap, plotly, PredictABEL, proBatch, PupillometryR, QFeatures, rbokeh, request, rex, rgbif, RmarineHeatWaves, RNeXML, Rnvd3, rPref, rprev, rscorecard, rWishart, shazam, simPH, skpr, SQLDataFrame, statar, taxa, thinkr, tidyquant, tidytree, tigger, treedata.table, treeplyr, tribe, valaddin, xpose4
ergmclust, ldaPrototype, NetMix, stm, themetagenomics, tosca
AGSDest, blockRAR, gsrsb, SurvGSD, triggerstrategy
mapedit, mapview, rgee, simplevis, spatialrisk, tmap
AirSensor, animaltracker, antaresViz, bayesmove, bcdata, bdclean, CARBayes, CARBayesST, eAnalytics, eiCompare, eph, epiflows, EPP, fitbitViz, futureheatwaves, genogeographer, geocmeans, GeodesiCL, geodrawr, GPSeqClus, gwpcormapper, icardaFIGSr, inlmisc, jpmesh, leafdown, leafem, leafgl, leaflegend, leaflet.minicharts, leafletCN, leafpm, leafsync, lingtypology, mapboxapi, mapedit, mapping, mapr, mapview, MazamaLocationUtils, MDMAPR, meltt, metScanR, mmaqshiny, modchart, mosaic, naturaList, neotoma, oceanis, owidR, palmid, ppcSpatial, PWFSLSmoke, QRAGadget, qualmap, rcrimeanalysis, rgee, rgeoprofile, robis, semnar, simplevis, skynet, smartmap, SPARTAAS, spatialrisk, SpNetPrep, TargomoR, tmap, toxEval, trackeR, Twitmo, valhallr, worldmet
animaltracker, bcdata, EPP, GPSeqClus, mapedit, MDMAPR, naturaList, oceanis, wallace
cNORM, ERSA, FactoMineR, fdm2id, FitAR, HH, lessR, lidaRtRee, LPRelevance, mcb, meifly, mixlm, modnets, mplot, TSA
cancerTiming, evidence, RSSampling, spatialreg, spdep
gsynth, interflex, penppml, RCT, VSdecomp
bbotk, biodb, DominoDataCapture, lgrExtra, mlr3, mlr3fselect, mlr3hyperband, mlr3oml, mlr3pipelines, mlr3spatial, mlr3tuning, rappsflyer, rsparse, RSQL, rvkstat, solitude, text2vec
activegp, binaryGP, DoE.wrapper, DSAIDE, DSAIRM, DynamicGP, EasyABC, ENMTools, GPfit, GPM, grapherator, hydroPSO, imabc, inaparc, LVGP, MaOEA, mcMST, mlrintermbo, mlrMBO, nlrx, optim.functions, OUwie, ParBayesianOptimization, penalizedSVM, poems, profExtrema, rrepast, sensobol, SOAs, tools4uplift, tramnet, TREXr, varycoef, yager, yap
ILoReg, kebabs, PrInCE, quanteda.textmodels, scBio, SIAMCAT, SwarmSVM, sweater
aRchi, FORTLS, leafR, lidaRtRee, treetop
adobeanalyticsr, atSNP, bayesTFR, BFS, bigrquery, biodb, biodbKegg, biodbLipidmaps, boral, boxr, broom.helpers, bs4Dash, chk, covidregionaldata, crosstable, crplyr, cSEM, cvms, cwbtools, czso, dbplyr, devtools, distributional, dittodb, dm, dplyr, dtplyr, dttr2, embed, EpiNow2, extras, fabletools, fauxnaif, feasts, ffscrapr, flobr, foieGras, furrr, gateR, GDPuc, geckor, GGally, ggcharts, gghighlight, gghilbertstrings, gmailr, googledrive, groupdata2, gtsummary, gwsem, healthyR, hms, HotellingEllipse, iai, ISAnalytics, janitor, japanmesh, labelled, lazytrade, mailmerge, mcmcr, mctq, mizer, mlfit, moodleR, mrgsolve, naijR, NEONiso, nflfastR, ngramr, ngsReports, nlist, NMproject, nomnoml, nonlinearTseries, opencage, OpenMx, parsermd, parsnip, pcFactorStan, peacesciencer, pense, pillar, pins, plot3logit, plu, plumber, plumberDeploy, ppcseq, prospectr, protti, psycModel, qualtRics, RAQSAPI, readr, readwritesqlite, rearrr, recipes, ringostat, rpdo, rpf, rRofex, rsample, rsimsum, rstac, rsyncrosim, rtern, rvest, salesforcer, santoku, scales, shiny, shinydashboardPlus, slickR, sparklyr, sparrpowR, speakr, ssdtools, states, statnipokladna, stoRy, survParamSim, taylor, term, testdat, testthat, texPreview, tibble, tibbletime, tidybulk, tidygate, tidygeocoder, tidyHeatmap, tidyr, tidyseurat, tidySingleCellExperiment, tidySummarizedExperiment, tidytable, tidytext, tongfen, Tplyr, tsibble, tune, u5mr, unusualprofile, usethis, vdiffr, vembedr, vroom, wbstats, weibulltools, workflows, workflowsets, xpectr, ypr, zipangu
baseline, BiGGR, BisqueRNA, ccrs, cds, cta, EAinference, EMMAgeo, eseis, evclust, FastSF, FindIt, fuzzyreg, geospt, geosptdb, gorica, granulator, hgutils, IntegratedMRF, MPTmultiverse, mrf, networkTomography, PACLasso, quantiseqr, scMappR, ScorePlus, TRMF, YAPSA
adaptalint, autoharp, dupree, goodpractice, languageserver
aroma.affymetrix, aroma.core, future, greed, origami, PSCBS
afex, agriTutorial, bruceR, clusterPower, CUFF, doremi, EMAtools, GeomxTools, GUniFrac, Maaslin2, mecor, metamicrobiomeR, metan, MicrobiomeStat, modnets, MSstatsTMT, multilevelTools, multisite.accuracy, muscat, pamm, panelr, psycModel, r2glmm, rADA, replicateBE, repmod, skpr, spicyR, StroupGLMM, variancePartition, VetResearchLMM
discharge, gld, hyfo, LMoFit, ParetoPosStable
copBasic, extremeStat, GWEX, PRSim, TLMoments
AgroR, apc, ARDL, autostsm, betareg, BinaryEPPM, bucky, ceser, chantrics, chipPCR, clusterSEs, CMatching, conleyreg, ConvergenceClubs, Countr, CountsEPPM, cregg, describedata, DHARMa, dLagM, DMLLZU, dynamac, dynlm, earlywarnings, ecm, elementR, envalysis, ExPanDaR, fglsnet, FindIt, forecast, fRegression, FSA, gcmr, GenericML, georob, GLMpack, glmx, gravity, grf, GVARX, GWASTools, GWPR.light, iCheck, iClick, interflex, invacost, ivreg, kernelPSI, lmviz, lpirfs, mixpoissonreg, mkin, mlogit, ModTools, monotonicity, My.stepwise, OneSampleMR, OOS, packDAMipd, pdR, plm, prais, promotionImpact, PRSPGx, pubh, rcompanion, rddtools, REndo, Seurat, smoothAPC, sovereign, spsur, timeOmics, tradepolicy, trafo, treeclim, vcd
clusterExperiment, DCA, DNLC, EpiDISH, LPRelevance, satuRn
ABSSeq, Anaquin, bayNorm, BBRecapture, bsseq, ClassifyR, CoImp, deco, DESeq2, DiffBind, diffHic, diffloop, dmrseq, easyRNASeq, EBImage, edgeR, EnrichedHeatmap, erccdashboard, FateID, furrowSeg, hdrcde, kdecopula, LICORS, LSX, MAnorm2, MMDiff2, paleofire, RaceID, RNAinteract, rvmethod, scGPS, splatter, statgenHTP, TCseq, TimerQuant, TimeSeries.OBeu, TSA, Wrench, WRI
CSTE, locpolExpectile, lpme, QBAsyDist, rddtools, TSclust, TSdist, tvmediation, WRI
archetyper, metaseqR2, MSstatsConvert, uavRmp, wilson
binancer, botor, CausalGPS, clockify, dce, emayili, filebin, lambdr, OmnipathR, path.chain, RMassBank, Rthingsboard, shiny.react, wppi
CytoGLMM, DEGreport, Maaslin2, mbest, mfdb, pathlibr, SPONGE, wpm, wrswoR
AUtests, GWASTools, multisite.accuracy, PhenStat, pogit, rnaEditr, SeqVarTools, Surrogate
lg, metaBMA, MIRES, neatStats, polyester, semiArtificial, TreeBUGS
BAMBI, bayesbr, bayesdfa, bayesforecast, bayesGAM, bayesnec, beanz, blavaan, bmgarch, bmggum, bpcs, brms, FlexReg, glmmfields, hBayesDM, hsstan, LMMELSM, mcmcsae, mcp, missingHE, MixSIAR, pcFactorStan, projpred, publipha, rater, rbioacc, rmsb, rstan, rstanarm, rtmpt, StanMoMo, ubms, walker
adagio, adiv, airpart, bikm1, bivquant, bmrm, CARNIVAL, cherry, deaR, eatATA, EventPointer, factor.switching, fdasrvf, geometry, hdiVAR, hdpca, ibd, kantorovich, KnapsackSampling, label.switching, ldsep, limSolve, lphom, matchingMarkets, mediation, mirtCAT, mknapsack, mlergm, MoTBFs, MSCMT, muRty, NCA, nsp, OGI, OptimalDesign, partitionComparison, pkgdepends, prcr, PROMETHEE, QCApro, reclin, Riemann, rmetalog, Rtropical, sampling, scdensity, SparseMSE, SpatialCPie, starvz, systemicrisk, T4cluster, T4transport, TestDesign, transformr, WhatIf, WSGeometry
coopProductGame, detectseparation, eat, editrules, ergm, errorlocate, MSCMT, openPrimeR, oppr, optimLanduse, productivity, ProjectManagement, Rata, ROI.plugin.lpsolve, Rtropical, sdcTable, validatetools, vrnmf, xxIRT
BrainSABER, ccmap, CellScore, CoreGx, DCD, DiffNet, DTWBI, DTWUMI, FSMUMI, IBCF.MTME, Signac
autoBagging, GenomicOZone, GmAMisc, rexposome, superb, tidyMicro
CTTShiny, difR, hIRT, irtreliability, IRTShiny, missCompare, MultIS, PsyControl, tcl
artfima, beyondWhittle, FitAR, sarima, slm, tscopula, tscount
ascotraceR, bioRad, card, finbif, stationaRy
abstr, APAtree, conleyreg, fsr, gtfs2gps, himach, moveVis, nngeo, oceanis, sfnetworks, stars, stplanr, sugarbag, tilemaps, tmaptools, wdpar
bellreg, bgeva, Cascade, CATkit, clespr, exdqlm, fdANOVA, GENMETA, geometry, GFD, GFDsurv, GJRM, GMMBoost, list, lorentz, MANOVA.RM, MCPAN, mdpeer, MM, msae, msaeDB, msaeRB, mvp, netmeta, nowcasting, optiSel, Patterns, pencal, permutations, refund, rlme, rr, SlaPMEG, spBayes, spray
add2ggplot, animation, basemaps, BioImageDbs, bookdownplus, carbonate, chimeraviz, chronochrt, colocr, colorizer, daiR, DiscoRhythm, doconv, eoffice, figpatch, fsbrain, gdiff, ggfx, ggimage, gm, handwriter, iconr, image.binarization, image.textlinedetector, imagefluency, imageseg, kerastuneR, mapboxapi, mapscanner, mathpix, meme, metaDigitise, moveVis, MtreeRing, multipanelfigure, OMICsPCA, openSkies, pathfindR, pavo, plothelper, PoPdesign, protein8k, r4lineups, ReactomeContentService4R, rfaRm, ROMDB, SpatialExperiment, spatialHeatmap, spatialLIBD, splashr, summarytools, svgtools, terrainr, texPreview, tidycharts, tvthemes, UMI4Cats, UniprotR, vprr, zoomGroupStats
AdhereRViz, ctmm, DescToolsAddIns, genlogis, iadf, PAMpal, Phxnlme, tigerstats
CruzPlot, naijR, RchivalTag, remote, swfscMisc
autoimage, cmsaf, cmsafvis, CompRandFld, cspp, hurricaneexposure, magicaxis, openair, osmplotr, PAFit, pals, perspectev, plotDK, PWFSLSmoke, RAT, rbison, s2dv, s2dverification, statgenSTA
autoimage, bdvis, biosurvey, cmsaf, cmsafvis, CompRandFld, countyfloods, CruzPlot, ecospat, etasFLP, excluder, fields, genogeographer, ggalt, highriskzone, hurricaneexposure, hyfo, hypervolume, immunotation, ISRaD, ITNr, jcext, LMMsolver, mapr, naijR, NicheBarcoding, noaastormevents, ouxy, pals, plotdap, pRecipe, R2019nCoV, RAC, rangemap, rbokeh, RchivalTag, rerddapXtracto, rinat, rmapzen, rvertnet, satin, SDLfilter, skynet, SpatialExtremes, SpatialVx, statgenSTA, swfscMisc, ternvis, Twitmo, vectorwavelet
animaltracker, APfun, assignR, ausplotsR, AWAPer, BayesX, bfsMaps, biogeo, bioRad, BPEC, bRacatus, car, cartograflow, cmsaf, cmsafvis, disaggregation, DRHotNet, ecospat, eeptools, EMbC, EnvExpInd, envi, EPP, GADMTools, gaiah, gbm.auto, gDefrag, geodetector, GEOexplorer, geojsonio, ggsn, gwer, hydroTSM, hyfo, incR, iSDM, LabourMarketAreas, landmap, letsR, lgcp, magclass, MapGAM, maskRangeR, MetaLandSim, movecost, oceanmap, openadds, opentraj, pgirmess, prevR, PWFSLSmoke, RAC, rangemap, rAvis, RchivalTag, red, rmapzen, rworldmap, satin, SDALGCP, secrlinear, SeerMapper, shp2graph, soilassessment, SPARTAAS, SpatialEpi, SpNetPrep, spNetwork, SSN, stampr, STMedianPolish, stplanr, SWMPr, tigris, track2KBA, vetools
covid19sf, crsuggest, GeodesiCL, mapedit, mapping, oceanis, osmgeosample, RGISTools, SDALGCP, SPARTAAS, sta
airGRteaching, AMPLE, BENMMI, BioImageDbs, BioNetStat, caffsim, cbpManager, checkdown, cola, compcodeR, confidence, coveffectsplot, dataCompareR, datamart, dccvalidator, devtoolbox, dowser, ezknitr, geneExpressionFromGEO, ggquickeda, gitgadget, GRANBase, gridtext, IOHanalyzer, jgcricolors, knitrBootstrap, leaflet, learnr, markdownInput, meshr, miniMeta, mirtCAT, plumbertableau, radiant.data, RawHummus, ReDaMoR, Rfssa, rock, Rqc, scCAN, shinyhelper, shinystan, SPARTAAS, teachingApps, TKCat, tutorial, uncoverappLib, viewpoly, wpa
CIMTx, CovSelHigh, MatchLinReg, pathVar, PropensitySub, SAMUR
cem, jsmodule, MatchThem, netdiffuseR, psborrow, Zelig
ADMUR, aglm, ammistability, augmentedRCBD, BrailleR, clifford, clusterPower, eatATA, einsum, EvaluateCore, FKF.SP, FoReco, freealg, germinationmetrics, GGMncv, hyper2, IFAA, JointAI, jordan, maczic, metadat, metafor, metan, metap, MM, multivator, NFCP, partitions, PLFD, poolr, prospectr, psychmeta, SCEM, sdcLog, sorcering, spfda, spray, statpsych, stokes, vcmeta
cwm, DeepPINCS, epca, fdcov, GGIR, infinityFlow, liayson, markovchain, MARX, metScanR, MIMSunit, MultiHorizonSPA, nowcasting, NPC, perARMA, RnaSeqSampleSize, RPS, rwt, SigFuge, StVAR, SuperPCA
conos, digitalDLSorteR, econetwork, fwildclusterboot, leidenAlg, orthogene
adass, AGPRIS, ahnr, backShift, BayesSampling, BEDASSLE, Bergm, BMTME, bnmonitor, BNPMIXcluster, BPRMeth, CoSMoS, COUSCOus, cSEM, DCEM, DiSSMod, dmlalg, DUBStepR, face, fdasrvf, fglsnet, geesmv, GenHMM1d, GenMarkov, glmmEP, graphicalExtremes, graphsim, ICsurv, ideq, isni, jlsm, lmmpar, lmvar, locpolExpectile, M3C, madness, MarkowitzR, matrixpls, meerva, Melissa, mfaces, microsamplingDesign, mixComp, MMeM, mvSLOUCH, nparMD, NRejections, OEFPIL, Opt5PL, OptimalDesign, panelvar, PROreg, psborrow, ptmixed, quadmatrix, refreg, relliptical, RMark, rodd, RRRR, sasfunclust, sdpdth, SharpeR, sim2Dpredictr, SIRE, skewMLRM, Skillings.Mack, slasso, SLBDD, SMLE, stablespec, starvars, survivalMPLdc, TCA, VIRF
BayesESS, BayesFactor, OutlierDM, pre, QTOCen, quantreg, twang, twangRDC
afdx, AGPRIS, apollo, autostsm, BLOQ, dccmidas, DEsingle, DirichletReg, DWreg, emhawkes, endoSwitch, fastR2, fitteR, GeneAccord, GenMarkov, good, lmvar, mclcar, metaSDTreg, mfGARCH, mhurdle, mixl, nhm, ohenery, paramlink, plm, predkmeans, rDEA, sensmediation, sfaR, sigInt, splm, tcensReg, ui, Zelig
autoimage, bamlss, CoSMoS, GEOmap, rNOMADS, Rquake, RSurvey, spemd, staRdom, StatDA, visualpred
apa, apaTables, auRoc, CoTiMA, cvcqv, iMediate, MOTE, neatStats, predictionInterval, pwr2ppl, replicationInterval, tidycomm
biospear, bujar, carSurv, DIFboost, EnMCB, gamboostMSM, geoGAM
hierarchicalDS, iCARH, PAMA, rriskDistributions, RSurveillance, Umpire, WRS2
activityGCMM, airpart, AneuFinder, autocogs, baggedcv, BayesSpace, Bchron, beadplexr, BimodalIndex, binnednp, bootcluster, bpgmm, Cardinal, chemometrics, CHMM, ClassDiscovery, Cluster.OBeu, clustMD, cogena, cola, ContaminatedMixt, cytometree, CytoTree, dCUR, deepgmm, diceR, DIscBIO, doseR, DR.SC, dsb, DuoClustering2018, EMMIXgene, evaluomeR, evclust, exomePeak2, expSBM, fabMix, FCBF, FCPS, Fiscore, FishResp, flexCWM, FourWayHMM, fpc, genefu, GREMLINS, HGC, HMMmlselect, IMIFA, IMIX, InTAD, integIRTy, ks, KScorrect, latrend, linkspotter, Linnorm, LMest, LogConcDEAD, LUCIDus, Luminescence, MAINT.Data, maSigPro, Melissa, mem, MesKit, methylKit, minfi, miRSM, MoEClust, mombf, msir, multiClust, multiviewtest, nethet, npde, oclust, odseq, OmicInt, oncomix, opGMMassessment, optCluster, OptimaRegion, otrimle, pathVar, PINSPlus, pivmet, PoDCall, ppgmmga, PredPsych, pRoloc, PureCN, qch, rCGH, RclusTool, RJcluster, rliger, robCompositions, rties, SAGMM, sasfunclust, sBIC, scDD, SCORPIUS, scPipe, scutr, SenTinMixt, SIBERG, sigQC, SimBindProfiles, sojourner, sovereign, spaceNet, splinetree, tidyLPA, TipDatingBeast, TSCAN, tsrobprep, VBLPCM, vimpclust, vscc, WACS, wavClusteR, wevid, XINA
hmi, LRQMM, mfa, NO.PING.PONG, ref.ICAR, StempCens, tRophicPosition
animalEKF, BatchQC, bayesanova, bayesDP, BayesLCA, BayesMFSurv, bayesmove, BayesPostEst, BayesSPsurv, bayest, Bergm, bgumbel, BHAI, blavaan, BMRMM, BMTAR, CARBayes, CARBayesST, coarseDataTools, ConsReg, dmbc, DPtree, epigenomix, evolqg, factor.switching, fdrDiscreteNull, frenchFISH, gJLS2, GraphAT, hierarchicalDS, HKprocess, hmma, HMMmlselect, Hmsc, HWEBayes, lchemix, llbayesireg, maxcombo, MBSGS, mbsts, MCPAN, Melissa, mfa, mHMMbayes, midas2, MIMOSA, miscF, miWQS, mixAR, MixSIAR, NMADiagT, noncomplyR, NSUM, ouxy, PLMIX, pmwg, popdemo, PortRisk, PRSPGx, qgg, quid, quokar, radmixture, Rdta, SizeEstimation, sizeMat, sorocs, sparseDOSSA, sparsereg, spikeSlabGAM, ssmsn, StVAR, Zelig
bayes4psy, bpgmm, dirmcmc, eiCompare, JointAI, nse, postpack, sklarsomega
CSMES, iopsych, moko, pdmod, SiMRiv, smoof
biomod2, bujar, Compositional, CVarE, fdm2id, MAVE, RclusTool, rminer, sparseLDA, xLLiM, zooimage
basifoR, chunkhooks, OasisR, presens, respirometry, SUNGEO
intsvy, mclogit, munfold, OutliersO3, R2MLwiN, Rchoice
aquodom, available, BARIS, baytrends, BiocDockerManager, biolink, BWStest, CAGEr, CellBench, censable, civis, conflicted, covidregionaldata, crops, cymruservices, DeLorean, devtools, dm, downlit, ecmwfr, eia, ergm, exoplanets, ffscrapr, fgeo.x, fishtree, GetBCBData, GetDFPData2, GetQuandlData, googleAnalyticsR, googleAuthR, goSTAG, gridpattern, heemod, huxtable, jpmesh, karyoploteR, kimisc, LAGOSNE, latte, LCAvarsel, LDATS, m2r, mapscanner, meteospain, metR, MODISTools, move, nat.templatebrains, nflreadr, nhdR, officedown, opencage, OpenML, osfr, packageRank, pacs, phateR, phenocamr, piggyback, pkgdown, polite, povcalnetR, prcbench, quincunx, RcppEigenAD, regioneR, rfishbase, rgoogleads, rmangal, rsoi, RSQLite, rtrek, RxODE, saeRobust, scopr, SIDES, simfinapi, slackr, slouch, snotelr, taxadb, treebalance, TreeDist
DrugClust, skyscapeR, smerc, ssev, ssPATHS
AID, EvidenceSynthesis, gemtc, joineRmeta, metabolic, metamicrobiomeR, metarep, metaRMST, metaumbrella, NMAoutlier, scan
altmeta, BayesCACE, boot.heterogeneity, boutliers, catmap, concurve, EValue, fmri, fragility, getmstatistic, getspres, KenSyn, mc.heterogeneity, meta, MetaCyto, metagam, metagear, metamedian, metamisc, metaplus, MetaUtility, metaviz, MetaVolcanoR, miniMeta, MMUPHin, multisite.accuracy, netmeta, NO.PING.PONG, NSM3, psychmeta, PublicationBias, puniform, RcmdrPlugin.MA, Replicate, reproducer, rma.exact, SimTimeVar, SSDforR, xmeta
CB2, dce, EGSEA, ICDS, MetaVolcanoR, multiGSEA, multiSight, NADfinder, RichR, rqt, singleCellTK
chillR, CIMTx, gaussplotR, isobxr, loewesadditivity, Markovchart, OVtool, paths, SOMbrero, synergyfinder, synoptReg, vprr
ConsReg, dblr, deepregression, iml, immuneSIM, lilikoi, MetaIntegrator, populR, predtoolsTS, previsionio, RSCAT, sense, specmine, superml, VARMER
bayes4psy, BayesRS, MARX, masscor, poems
BaM, basecamb, biokNN, bootImpute, censcyt, dlookr, doMIsaul, dynr, eatRep, finalfit, hhsmm, hmi, hot.deck, idem, intmed, JWileymisc, konfound, logistf, MatchThem, mdapack, mi4p, miceafter, mifa, missCompare, missMDA, MIWilson, MRPC, MSiP, NADIA, NIMAA, OTrecod, PathSelectMP, pguIMP, psfmi, RBtest, RegularizedSCA, rexposome, sociome, StackImpute, synergyfinder, weights
BIFIEsurvey, Conigrave, eatRep, mdmb, psfmi
cola, doBy, funGp, getDTeval, multivariance, profExtrema
ariExtra, AzureStor, beakr, blastula, boxr, crul, dash, distill, downloadthis, emayili, emuR, epivizrServer, gmailr, handlr, httr, JBrowseR, jrc, markdown, Microsoft365R, minidown, mongolite, opalr, opencpu, pins, plumber, rdryad, RestRserve, rockr, RSocrata, salesforcer, servr, shiny, sofa, solvebio, sonicscrewdriver
addinslist, addinsOutline, asciiSetupReader, baRcodeR, BARIS, BED, BETS, bupaR, chromVAR, colourpicker, conflr, convertr, CRANsearcher, crossmeta, crunchy, daqapo, datadigest, DataEditR, datasets.load, dplyrAssist, edeaR, editData, ERSA, EventStudy, farrell, fitur, forestmangr, ggedit, ggExtra, ggplotAssist, ggThemeAssist, gimmeTools, giphyr, gitgadget, jpmesh, jsTreeR, liminal, linguisticsdown, mailmerge, manipulateWidget, mapedit, mgcViz, NMproject, objectremover, pipefittr, pixels, processmapR, processmonitR, QRAGadget, questionr, r6methods, RadialVisGadgets, rainette, rcrossref, roadoi, SemNetCleaner, Seurat, ShinyQuickStarter, shinyrecipes, simrel, sinew, snahelper, SpaDES.addins, teachingApps, TFutils, trackr, tsviz, urlshorteneR, ymlthis
ActCR, afmToolkit, AgroReg, AquaEnv, BIGL, BIOMASS, bootf2, cdom, CornerstoneR, diffGeneAnalysis, downscale, echo.find, econet, epifitter, eseis, estprod, FAMetA, FatTailsR, flippant, flowPloidy, FME, forestmangr, GB2group, gen5helper, genSEIR, germinationmetrics, gplsim, growthcurver, iCAMP, lactater, LLSR, Luminescence, marcher, MetaLandSim, methimpute, mixchar, mixtox, MortalityLaws, MSstatsLOBD, nls.multstart, NonlinearTSA, OEFPIL, OenoKPM, oro.pet, peakPantheR, postGGIR, proFIA, ptairMS, PVplr, rAmCharts4, Rdca, respirometry, Rquake, rsetse, scClassify, semds, sfadv, shapes, sicegar, sojourner, spant, takos, temperatureresponse, TIMP, xgxr
cops, cplm, Dire, FME, geosptdb, glmmLasso, GMMBoost, gnomonicM, GxM, lme4, nlmixr, palm, pmpp, Rnmr1D, simecol, sobolnp, spaMM, spsur, survey, tukeyGH, VARsignR, wCorr, WeMix
airt, BifactorIndicesCalculator, ctgdist, DFIT, difR, equateIRT, faoutlier, GPCMlasso, irtGUI, irtreliability, jrt, kequate, mstDIF, MultBiplotR, PROsetta, scDIFtest, shinyIRT, ShinyItemAnalysis
baggingbwsel, brainKCCA, cowbell, curvHDR, hyperoverlap, JointNets, metadynminer3d, multiDimBio, NPCirc, plot3D, refreg, sparr
censReg, DIFlasso, EffectStars2, fastR2, frontier, LOST, MAINT.Data, micEcon, micEconAids, micEconCES, micEconIndex, micEconSNQP, mvProbit, Rchoice, sampleSelection, SimTimeVar, splmm, yhat
ADAPTS, autohd, highMLR, KarsTS, longit, MAI, missCompare, MSPrep, NADIA, obliqueRSF, pmp, proFIA, speaq
Factoshiny, geneticae, INSPIRE, missCompare, NADIA, NIMAA, OTrecod
Conigrave, kmi, miceadds, miceafter, missDeaths, psfmi, survey
AFM, AUCell, CiteFuse, ddpcr, DSWE, EntropyMCMC, enviGCMS, gemini, genomicInstability, ggrasp, IMIX, IRISFGM, kernplus, l1kdeconv, MiRKAT, opGMMassessment, pRoloc, RTN, scClassify, scone, sojourner, Surrogate, viper, ztpln
bayesGAM, forestRK, FSinR, MLInterfaces, mlr3, OddsPlotty, spFSR, stream, TSDT
alookr, dendroTools, GroupBN, healthcareai, lilikoi, mikropml, StarBioTrek, yager
clusterSEs, DCEmgmt, DCEtool, Demerelate, gmnl, idefix, misclassGLM, nmm, pleLMA, riskclustr
aslib, DriveML, flacco, ipfr, landmap, live, mosmafs, nsga3, SPOTMisc, tramnet, tuneRanger, varycoef
autohd, DoubleML, highMLR, mcboost, mlr3filters, mlr3hyperband, mlr3oml, mlr3pipelines, mlr3shiny, mlr3spatiotempcv, mlr3tuningspaces, sense
DoubleML, highMLR, mlr3shiny, mlr3verse, NADIA, sense
bbotk, DoubleML, mcboost, mlr3, mlr3benchmark, mlr3cluster, mlr3db, mlr3filters, mlr3fselect, mlr3hyperband, mlr3learners, mlr3oml, mlr3pipelines, mlr3proba, mlr3spatial, mlr3spatiotempcv, mlr3tuning, mlr3tuningspaces, mlr3verse, mlr3viz, mlrintermbo, paradox
CoOL, CRISPRseek, D2MCS, sojourner, visualpred
apollo, ARpLMEC, bapred, BayesCR, bgsmtr, BifactorIndicesCalculator, blavaan, ContaminatedMixt, correctedAUC, derivmkts, DesignCTPB, DiceOptim, dispRity, doppelgangR, EasyABC, ei, EMbC, ERP, FADA, flowClust, GJRM, GLMaSPU, highmean, ICAOD, latentcor, lavaan, ldbod, lmmpar, MBESS, MBSGS, mixAK, mixedCCA, MixedPsy, MixtureMissing, mvord, paleoTS, phytools, pmcgd, psych, Rgbp, SIBER, sn, ssmn, SurvGSD, tsDyn, UPG, WACS, wCorr, wsprv
audrex, compcodeR, DCA, GUniFrac, jenga, lambdaTS, LANDD, ldsep, MicrobiomeStat, MIMOSA, OBASpatial, proteus, tetragon, WRI
caret, D2MCS, interflex, preciseTAD, RaSEn, TSPred
AEenrich, lifelogr, predict3d, sjstats, tidyboot, tidyverse
betareg, bujar, coin, distributionsrd, dmbc, eaf, flexmix, ockc, psychomix, rankdifferencetest, revtools, topicmodels, TSDT
AFM, AovBay, AROC, ARPALData, audrex, augmentedRCBD, autocogs, BatchQC, bioacoustics, BrailleR, cascsim, CensSpatial, combiroc, CONFESS, CorrToolBox, corx, csa, DeductiveR, DepecheR, descstatsr, Dpit, drawsample, drhur, ecd, emdi, ezCutoffs, ezr, foreSIGHT, ForestDisc, forestr, FORTLS, frontier, funModeling, GeoRange, gJLS2, hettx, hyfo, imagefx, jenga, ldhmm, MapeBay, materialmodifier, MsdeParEst, MultiVarMI, mvdalab, MVN, mvnormalTest, nullabor, oddstream, onewaytests, otvPlots, PDQutils, pfica, pmpp, proteus, ptmixed, qat, ROCnReg, royston, SCnorm, semsfa, SentimentAnalysis, sfaR, sglg, sigQC, SimplifyStats, skewlmm, skewMLRM, ssmn, tdsc, tetragon, trafo, Ularcirc, validann, vampyr, xROI
ARpLMEC, CensMFM, HeckmanEM, lqr, RcppCensSpatial
ggplotAssist, predict3d, pubh, rrtable, webr
Arothron, doolkit, morphomap, patternize, prWarp, TestDimorph
cylcop, DirStats, HDiR, NPCirc, Patterns, Thresher
aMNLFA, BifactorIndicesCalculator, dmacs, IPWpn, mlVAR, PathSelectMP, plotSEMM, thurstonianIRT, tidyLPA, tidySEM
AutoPipe, ChromSCape, escape, hypeR, netgsa, pathfindR, RVA, scITD, scTGIF, singleCellTK
ARCensReg, ARDL, ASSET, ASSIGN, BayesianTools, BayesRGMM, breakpoint, bsam, ccostr, ccrs, CensSpatial, cfda, clustMD, CopCTS, cosa, decisionSupport, DelayedEffect.Design, DFIT, difNLR, EAinference, eatRep, ei, eiPack, endoSwitch, epiphy, frailtyEM, gems, gmnl, grmsem, hesim, hmi, horseshoenlm, httk, iBATCGH, ICcalib, interactionR, intsurvbin, joineRmeta, methInheritSim, msmtools, OneSampleMR, optBiomarker, oro.pet, PanCanVarSel, parfm, pexm, qte, Rchoice, RMark, rriskDistributions, rtdists, semmcmc, SightabilityModel, simExam, SizeEstimation, sparsereg, SPAS, spBFA, spCP, Surrogate, surrosurv, tradepolicy, TREXr, TropFishR, varTestnlme, womblR
flexsurv, markovMSM, maxcombo, MIICD, OptimalTiming
beyondWhittle, multDM, quantdr, QWDAP, SLBDD, VARDetect
biostat3, ComparisonSurv, CPsurv, flexsurv, vsd
AgroR, ANOM, augmentedRCBD, breathtestcore, censcyt, cg, CIplot, clustDRM, coin, Crossover, DAPAR, Deducer, diffcyt, DMCHMM, drc, easyDes, factorplot, gMCP, ibd, ICRanks, iNZightRegression, jmv, lavaSearch2, lmDiallel, LMMstar, MAGNAMWAR, MANOVA.RM, MCPAN, mixlm, mlmm.gwas, mlt.docreg, mratios, multiCA, mutoss, NADA2, perccalc, piecewiseSEM, Publish, RABR, rankFD, rms, seedreg, sensR, SimComp, spass, tram, treekoR, TTAinterfaceTrendAnalysis, twosigma, VetResearchLMM
AgroR, asbio, augmentedRCBD, functClust, JWileymisc, mlmm.gwas, PMCMRplus, rcompanion, rosetta, seedreg, TestDimorph, visStatistics
ClimProjDiags, CSIndicators, CSTools, s2dv, startR
alphabetr, BMRMM, DNAtools, jack, ks, relSim, SIDES, splitSelect
climwin, cvms, emdi, lefko3, phylopath, pulsedSilac, regrrr, smicd, TSPred, umx
attrib, metaRMST, micemd, surrosurv, xmeta
assignR, bartBMA, BayesMRA, BBSSL, BGGM, bigmatch, bltm, chickn, DiPs, esaddle, forestecology, gmvarkit, gratia, heemod, horserule, IMIFA, match2C, MGMM, MoEClust, PROsetta, RBestMatch, shapr, simstudy, SMLE, SurrogateRegression, VARsignR
aghq, AssetCorr, bisque, BLPestimatoR, ICAOD
angstroms, bigutilsr, chromVAR, distanceto, ecospat, filling, mgwrsar, nat, nat.nblast, nngeo, STMedianPolish, stplanr
audrex, clustermq, FunCC, jenga, lambdaTS, proteus, specmine, tetragon
castor, corehunter, dce, gen5helper, james.analysis, mnem, nempi
CluMP, doMIsaul, iCellR, OMICsPCA, opGMMassessment, RCSL, s2dv, s2dverification, traj
angstroms, AWAPer, ClimDown, cmsaf, cmsafops, cmsafvis, cropDemand, cropZoning, cruts, CSTools, DWBmodelUN, dycdtools, easyNCDF, efts, eixport, EmissV, erah, FedData, gdalcubes, gimms, gumboot, HiClimR, hyfo, leri, lgcp, lue, marmap, meteoland, mzR, ncdf4.helpers, ncdump, oceanmap, osmose, PAMmisc, pRecipe, qat, RAC, raytracing, rbi, RCGLS, RchivalTag, rerddap, rerddapXtracto, rSQM, s2dv, s2dverification, satin, TargetSearch, tidync
CSUV, doMIsaul, FarmSelect, HCTR, hdnom, ITRSelect, mcb, mrMLM, mrMLM.GUI, msaenet, naivereg, NHMSAR, penppml, polywog, SIS, SOIL, sparsevar, stabiliser
backbone, BasketballAnalyzeR, Bergm, BGGM, bingat, bootcluster, btergm, CEMiTool, CeTF, CINNA, CluMSID, conserveR, degreenet, discourseGT, EGAnet, EpiModel, epinet, ergMargins, ergmito, fcoex, fergm, fglsnet, genBaRcode, GGMncv, GGMnonreg, ggnetwork, GOxploreR, gwdegree, haplotypes, InflectSSP, intergraph, jlsm, lolog, migraph, motifr, MRPC, netdiffuseR, nethet, netplot, networkABC, NetworkChange, NetworkDistance, NetworkExtinction, PAFit, PDN, PhosR, pkggraph, PubScore, quanteda.textplots, RDS, SBICgraph, sidier, SparseTSCGM, statnet, tergmLite, WRSS
aaSEA, BallMapper, BayesianNetwork, BioNERO, CIMICE, DataExplorer, dextergui, geneXtendeR, LUCIDus, modchart, multiSight, NIMAA, OpenLand, pkggraph, robin, RWsearch, SubCellBarCode, UniprotR, wpa
ITNr, netdiffuseR, PAFit, statnet, tergmLite
EventDetectR, FSinR, FWRGB, LilRhino, Modeler, nnfor, regressoR, RSDA, SignacX, trackdem, traineR
freesurfer, neuronorm, papayar, spm12r, WhiteStripe
CBSr, Compositional, cops, ffp, mosqcontrol, uncorbets
acc, augSIMEX, BIGL, brms, cglm, combi, covsim, decisionSupport, drgee, dynsurv, frailtySurv, fungible, GDAtools, GEint, genpwr, georob, GWEX, hmmm, ipwErrorY, ivtools, ktsolve, LDPD, likelihoodAsy, LLSR, LPWC, lumi, mclcar, meteR, mev, miCoPTCM, microsynth, MSPRT, optedr, pim, ppmHR, RCM, reReg, sfaR, SimCorrMix, SimMultiCorrData, spef, spGARCH, SPPcomb, SWIM, synergyfinder, touchard, TrendInTrend, triggerstrategy, TruncatedNormal, VFS, WLinfer, zcurve
adventr, aGE, agricolae, agriTutorial, AICcmodavg, AllelicImbalance, alphastable, ape, arm, BayesLCA, bcmixed, bdots, bkmr, BoostMLR, boostmtree, breathtestcore, brms, broom.mixed, buildmer, CALANGO, car, Cardinal, caret, carx, cccrm, cem, cg, CKLRT, climwin, CLME, clusterPower, collin, contrast, cope, CovCombR, coxme, cplm, CUFF, densEstBayes, DescrTab2, distdichoR, dlnm, dmrseq, dsm, easyanova, easyreg, eba, eBsc, emdi, faraway, fda.usc, fixest, fmri, frailtypack, gastempt, gcmr, geesmv, GeNetIt, georob, geoSAE, GEVACO, gJLS2, glme, GLMMadaptive, glmmfields, glmmTMB, Greg, gremlin, GxM, hmi, IntegratedJM, investr, isni, joineR, KenSyn, lavaSearch2, lme4, lmeInfo, LMMELSM, LPower, lqmm, lucid, MARSS, MBESS, mdpeer, metafor, MethComp, micemd, minfi, MIRES, mkin, MKinfer, MLID, mlmi, mnreadR, MplusTrees, MSwM, multifear, multilevelTools, MultiSV, MuMIn, mvctm, NBR, nlmeU, nlmixr, nlMS, nlraa, nlsem, OPDOE, openCR, ouxy, packDAMipd, PADOG, PCPS, pencal, pengls, PhenStat, photosynthesis, phytools, piecewiseSEM, PKNCA, plm, polyqtlR, portfolio, powerEQTL, psych, psychometric, pwr2ppl, qtlpoly, qusage, rareGE, refund, reghelper, replicateBE, reportReg, RISCA, rlme, RLRsim, rms, robustlmm, RPPASPACE, rr2, rsq, rstanarm, rties, SAMGEP, scan, secr, SemiPar, shorts, sigFeature, SIMPLE.REGRESSION, skewlmm, SmoothWin, SMPracticals, spaMM, spatialreg, SpatialVS, spdep, sphet, splm, spm2, StroupGLMM, Surrogate, SurvDisc, surveillance, tableone, TempCont, tergm, tramME, TTAinterfaceTrendAnalysis, tukeytrend, umx, urca, varTestnlme, vcrpart, VetResearchLMM, vICC, vici, warpMix, Xeva, xpose.nlmixr
adoptr, ANCOMBC, binaryGP, blackbox, castor, chickn, ciuupi, ciuupi2, ClinicalUtilityRecal, ConsReg, cops, cort, cosa, CoSMoS, DGLMExtPois, diffusion, DSAIDE, DSAIRM, dtwclust, durmod, edmcr, ExtremalDep, ForestDisc, foretell, garma, GDINA, gimme, greybox, gscreend, hawkesbow, ICAOD, InfoTrad, junctions, legion, lme4, logitr, LPsmooth, mdpeer, mev, minimaxdesign, missSBM, mixchar, mlt, modcmfitr, mosqcontrol, mssm, nlshrink, optedr, OptimaRegion, optiSolve, phyr, PLNmodels, PoA, ptw, QBAsyDist, RcppNLoptExample, riskParityPortfolio, RiskPortfolios, RNAdecay, RobustGaSP, ROI.plugin.nloptr, rrscale, RSDA, rugarch, SAMGEP, seqHMM, signeR, smam, smooth, spaMM, spant, SPOT, stpm, Summix, support, survELtest, TCA, TOHM, yaps
chinese.misc, CSeqpat, NLPclient, NLPutils, openNLP, qdap, RSentiment, slowraker, syuzhet, textreg, textreuse, tm.plugin.alceste, tm.plugin.dc, tm.plugin.europresse, tm.plugin.factiva, tm.plugin.koRpus, tm.plugin.lexisnexis, tm.plugin.mail, tm.plugin.webmining
BAT, beezdemand, epcc, ezmmek, mstherm, rBiasCorrection, sojourner, TPP
chromswitch, clusterExperiment, debCAM, diceR, hNMF, miRSM, NanoStringQCPro, pcaExplorer, projectR, scITD, shattering, sigminer, SomaticSignatures, spectralAnalysis, SpNMF
autostats, BaBooN, batchtma, BayesTree, Biocomb, biomod2, bndovb, brglm2, car, CARRoT, causal.decomp, cfbfastR, chemmodlab, chemometrics, CIMTx, coca, CoImp, Compositional, CORElearn, corHMM, cpt, DAMisc, DChaos, difNLR, diversityForest, DMLLZU, drhur, drpop, EffectLiteR, effects, EnsembleBase, EPX, expose, factormodel, factorplot, flexmix, forecast, Frames2, fRegression, GDAtools, gencve, GenMarkov, gesttools, gfoRmula, glm.predict, glmdisc, GLMpack, GMDH2, gnm, GPSCDF, gscaLCA, gWQS, hmi, Hmisc, hmm.discnp, Hmsc, hybridEnsemble, ipred, ipw, IsingSampler, isni, ivitr, jmv, kgschart, landmap, LCAvarsel, LDATS, logisticRR, LUCIDus, MachineShop, MaOEA, mcca, mDAG, MEclustnet, MEDseq, mExplorer, mlearning, MNLR, Modeler, MoEClust, MXM, nempi, networktools, NeuralNetTools, nnNorm, nntrf, NoiseFiltersR, npcs, ordinalForest, polyreg, pRoloc, PropensitySub, PSweight, pvsR, radiant.model, rasclass, RaSEn, RBtest, RclusTool, RecordLinkage, RISCA, rminer, RRMLRfMC, RTextTools, rties, RVAideMemoire, scde, SDMtune, semiArtificial, seq2pathway, seqest, ShinyItemAnalysis, shinyr, SIDES, sigQC, simPop, SLEMI, soilassessment, Sojourn, sparsebnUtils, spls, SSDM, synthpop, traineR, tsDyn, TSPred, VIM, visualpred
EEMDelm, mrf, MSGARCHelm, stlELM, stlTDNN
accucor, adamethods, ADAPTS, alphastable, Anthropometry, bnpsd, Cascade, CATALYST, debCAM, deconvR, drpop, erah, EventPointer, FARDEEP, GeoFIS, granulator, hNMF, hybridEnsemble, isotone, lmtp, mboost, miscIC, nmathresh, osd, Patterns, poolfstat, powdR, randnet, rcosmo, rNMF, rrcov3way, smacof, SparseSignatures, spectralAnalysis, studyStrap, TIMP, UNDO, vrnmf, zetadiv
AROC, baggingbwsel, binnednp, L2DensityGoFtest, minfi, ROCnReg, varbvs
DAPAR, misaem, misty, mlmi, modi, MultiVarMI, naniar, psfmi, rrcovNA
AgroR, AID, AovBay, bestNormalize, BrailleR, cprobit, earlywarnings, EnvStats, iCAMP, MapeBay, momr, moonBook, mr.raps, MVN, mvnormalTest, myTAI, nortsTest, NSM3, olsrr, onewaytests, pguIMP, PhenStat, quickReg, RcmdrMisc, rcompanion, royston, sars, SixSigma, toolStability, twowaytests, visStatistics
AROC, bndovb, CARS, causalweight, Compind, condSURV, crs, drtmle, lg, MaskJointDensity, mlt.docreg, nlpred, npbr, nse, NSM3, pssmooth, Qtools, quantilogram, rcDEA, ROCnReg, rpatrec, simIReff, sobolnp, survidm, treeclim
bellreg, CNVScope, DNABarcodeCompatibility, DoE.base, eggCounts, FielDHub, ghypernet, groupdata2, HadamardR, LHD, MFDFA, mvPot, permutations, quhomology, rabi, sensitivity, vertexenum
argoFloats, dendroTools, morphomap, skyscapeR, soundecology, SWMPr, vprr
bcputility, datrProfile, dbparser, drfit, explore, virtuoso
augmentedRCBD, compareGroups, concurve, crosstable, demoGraphic, DescrTab2, documenter, eoffice, EpiReport, flextable, GWSDAT, interactionR, inTextSummaryTable, jsmodule, kfa, MCPModPack, MedianaDesigner, microplot, mschart, officedown, onbrand, presenter, processR, r2pptx, repmod, rrtable, RtutoR, rvg, SWMPrExtension, thinkr, WordR, ztable
BiocSet, famat, fobitools, gsEasy, immunotation, ontologyPlot, ontologySimilarity, PTXQC, SimReg, struct
BimodalIndex, CrossValidate, GenAlgo, NewmanOmics, PCDimension, Thresher
AirSensor, AtmChile, htsr, iClick, opentraj, PWFSLSmoke, simulariatools, SOMEnv, SWMPr, worldmet
CNVScope, fitbitViz, imagefluency, schemr, SuperpixelImageSegmentation
aphid, AzureAuth, AzureContainers, AzureCosmosR, AzureGraph, AzureKeyVault, AzureKusto, AzureQstor, AzureStor, AzureTableStor, AzureVMmetadata, base64, bcrypt, biodb, contentid, credentials, cyphr, dclust, distill, easyr, encryptr, ExPanDaR, firebase, geonapi, geosapi, gert, googleCloudRunner, googleCloudStorageR, httr, httr2, ids, insect, insee, keyring, keyToEnglish, kmer, lazytrade, mdapack, mlflow, mongolite, mstrio, ocs4R, opencpu, otp, ows4R, pinnacle.API, pins, RBaseX, rbtc, rDataPipeline, reconstructr, rgugik, ricu, rkeops, RPresto, rsconnect, RSelenium, secret, SensusR, shinymanager, sparklyr, splashr, sship, systemPipeShiny, umap, voson.tcn, wilson
act, aoristic, appreci8R, aquodom, artMS, bibliometrix, blrm, cbaf, CHRONOS, CLME, CNVPanelizer, CohortPlat, COINr, compareDF, condformat, conmet, CoTiMA, DAPAR, dataframeexplorer, ddPCRclust, do, dragon, edbuildr, editData, emdi, EventStudy, fasstr, fedup, GA4GHshiny, gerbil, glancedata, HadamardR, HiResTEC, HPAanalyze, hypeR, ie2misc, joinXL, KHQ, kutils, lares, lessR, libr, LifeInsuranceContracts, LLSR, MatrixQCvis, memapp, MicroSEC, mimsy, miRetrieve, nanotatoR, odk, OenoKPM, openPrimeR, OpenRepGrid, OpenRepGrid.ic, oreo, Pigengene, PloGO2, presenter, psidR, qdap, QTL.gCIMapping, QTL.gCIMapping.GUI, rADA, RALSA, rbiom, repana, reproducer, rfordummies, rio, RIPAT, RJafroc, Rtrack, samr, scorecard, seasonalview, SEERaBomb, SEtools, shinypivottabler, sigFeature, sistec, sstModel, tatoo, tigerhitteR, timeseriesdb, TPP, TPP2D, uncoverappLib, upstartr, vanddraabe, varitas, whomds, whSample, zoomGroupStats
eicm, flipr, grmsem, Markovchart, scgwr, starvars, varycoef
aldvmm, BiProbitPartial, BTdecayLasso, corncob, Disequilibrium, Inflect, MultBiplotR, SkeweDF
AlphaBeta, BayesLN, calibrar, CatDyn, CensSpatial, CJAMP, CLVTools, Countr, cxr, ecd, ExtDist, EZtune, gear, geoBayes, hero, hierSDR, invGauss, ldhmm, LifeHist, mapbayr, marked, metabomxtr, mrds, mvord, netcom, nlmeVPC, PartCensReg, pdynmc, phenofit, PLmixed, projpred, psychonetrics, RAINBOWR, rankdist, REndo, reReg, ROI.plugin.optimx, SAMBA, spfrontier, Synth, targeted, tidysynth, ubiquity, WeibullFit, ZIPFA
BiocCheck, fmriqa, Maaslin2, PACVr, PhenotypeSimulator, plinkQC, REPTILE, sparseDOSSA
BayesOrdDesign, crch, drhur, drord, ecoCopula, hmi, jomo, MXM, optimus, serp, truthiness
brainKCCA, cifti, ciftiTools, dti, hNMF, JointNets, mand, neuronorm, oro.dicom, oro.pet, papayar, qMRI, RIA, spm12r, threeBrain, vesselr, vows, voxel, WhiteStripe
admix, basefun, expandFunctions, FMCCSD, geoFourierFDA, HoRM, HyRiM, LPBkg, LPsmooth, MDBED, mpoly, OPDOE, optedr, PDQutils, RandomCoefficients, RCBR, sadists
cort, CVXR, frechet, isodistrreg, optweight, powerly, ROI.plugin.osqp
BEclear, bridger2, chipPCR, CONFESS, DChaos, dmrseq, elementR, GeomxTools, OasisR, OutlierDM, pguIMP, referenceIntervals, scDD, scTensor, SegEnvIneq
crops, eclust, ERP, MetaDBparse, teachingApps, TidyConsultant
a4Classif, AutoPipe, Biocomb, DeSousa2013, MLSeq, nlcv, Rmagpie, stylo
BatchQC, brinton, brr, carpenter, dataMaid, dataReporter, eclust, epiR, funModeling, geodimension, goxygen, hagis, jtools, LifeInsuranceContracts, LOGAN, Metab, metaseqR2, MplusAutomation, mscstexta4r, mscsweblm4r, ngsReports, packagefinder, PCADSC, qcmetrics, rapport, rapportools, rmda, rosetta, shinyobjects, starschemar, summarytools, ufs, veccompare, xgxr
mlr3, mlr3cluster, mlr3filters, mlr3fselect, mlr3hyperband, mlr3learners, mlr3pipelines, mlr3proba, mlr3spatiotempcv, mlr3tuningspaces, mlr3verse, mlrintermbo, sense
dbcsp, ILoReg, ImpactEffectsize, knnp, mina, MLGL, oppti
bigparallelr, bigreadr, bootUR, future, mlr3
aslib, dataquieR, ecr, emdi, landmap, ldaPrototype, llama, mcMST, mlr, mlrMBO, mosmafs, nsga3, performanceEstimation, saeSim
broomExtra, correlation, cvms, dotwhisker, effectsize, ggstatsplot, glmglrt, MCM, modelbased, modelsummary, psycho, psycModel, report, see, sjPlot, sjstats, statsExpressions
aslib, CEGO, DriveML, landmap, mosmafs, SIAMCAT, tramnet, tuneRanger, varycoef
dataone, DIZutils, matman, mds, pkgsearch, rerddapXtracto, rhub, shinytest, togglr
autostats, cuda.ml, healthyR.ai, healthyR.ts, modeltime, modeltime.ensemble, modeltime.gluonts, modeltime.h2o, modeltime.resample, ppsr, shinymodels, sknifedatar, SSLR, stacks, text, tidymodels, tune, workflows
binGroup, binGroup2, biogram, bmabasket, clifford, DoE.base, freealg, HS, hyper2, jack, LongMemoryTS, matchingMarkets, mpoly, mvp, permutations, robber, spray, stokes, syt, untb
alookr, autoBagging, autostats, aVirtualTwins, CTShiny, CTShiny2, EFS, IPMRF, MachineShop, multilevelPSA, OTrecod, permimp, PredPsych, psica, rminer, simPop, stablelearner, synthpop, TSDT
C443, C50, CGPfunctions, dipm, dlookr, eat, forestRK, glmtree, LLM, localModel, logiBin, LTRCforests, LTRCtrees, mboost, moreparty, MST, networktree, Pigengene, PlackettLuce, pre, psica, scorecardModelUtils, stablelearner, StratifiedMedicine, tidyrules, treeheatr, visTree
adductomicsR, cgmanalysis, endtoend, grapesAgri1, hopbyhop, lmem.qtler, measuRing, sift, trackter, traj, TTAinterfaceTrendAnalysis
aplot, autostats, bridger, Cepo, ChemoSpec, chillR, ComplexUpset, dataquieR, dearseq, decisionSupport, dyngen, dynplot, EpiNow2, fairmodels, fdaPOIFD, figpatch, FindIT2, fitbitViz, foieGras, forestecology, funcharts, ggcharts, ggheatmap, gglm, ggstatsplot, gratia, HGC, hockeystick, iglu, infer, insane, insurancerating, iNZightRegression, iNZightTS, lactater, lares, loon.ggplot, LSTS, mcp, MedLEA, memes, metabolic, metan, mFD, microbiomeMarker, MicrobiotaProcess, miloR, mrgsim.sa, msmtools, multiplestressR, NanoMethViz, NetFACS, orthogene, plotmm, POMA, powerly, ppseq, psycModel, radiant.basics, radiant.data, radiant.model, radiant.multivariate, redist, rhierbaps, scRNAstat, SEIRfansy, Seurat, Signac, spatialRF, splithalf, spotoroo, starvz, suddengains, tinyarray, treekoR, triplot, unusualprofile, visxhclust, wordpredictor
paws.analytics, paws.application.integration, paws.compute, paws.cost.management, paws.customer.engagement, paws.database, paws.developer.tools, paws.end.user.computing, paws.machine.learning, paws.management, paws.networking, paws.security.identity, paws.storage
activity, ADAM, airpart, AmpGram, antaresEditObject, antaresRead, apTreeshape, baRulho, basemaps, BayesFactor, BBcor, bbreg, BetaPASS, blackbox, bootnet, bSims, CancerGram, caretEnsemble, ccdf, cellbaseR, CelliD, CENFA, cfda, CliquePercolation, condiments, corpustools, corto, csabounds, cTRAP, cwbtools, dearseq, did, diffloop, digitalDLSorteR, disto, DMCfun, dynaSpec, dyngen, easyVerification, Ecume, epiphy, eRTG3D, extremeStat, factorEx, faoutlier, FCBF, flipr, ftDK, FuncNN, GCalignR, gcite, gerbil, GGMncv, glmmSeq, gmvarkit, gtfs2gps, HeritSeq, hero, hypervolume, HYRISK, IDF, immcp, infinityFlow, Infusion, kernelPhil, leastcostpath, libbib, linkspotter, Maaslin2, mapi, MetaDBparse, metafor, microbiomeDASim, mirtCAT, mixpoissonreg, MMDCopula, mobr, modnets, MortalityGaps, MortalityLaws, moveVis, MRFcov, multiHiCcompare, neonUtilities, nettskjemar, NetworkToolbox, nhdplusTools, nodeSub, NPMLEmix, ontoFAST, opentripplanner, optinterv, parSim, partR2, PCRedux, phylopath, PhyloProfile, polmineR, portfolioBacktest, PRDA, preciseTAD, predictionInterval, psychonetrics, qgraph, qsub, qte, racademyocean, ractivecampaign, RandomForestsGLS, rangeBuilder, RCAS, rdwd, regsplice, replicationInterval, ResourceSelection, retriever, rfacebookstat, RFmerge, rgoogleads, ri2, rPanglaoDB, rptR, Rraven, Rtrack, rtsVis, rytstat, saeRobust, satuRn, scMappR, SCORPIUS, scTenifoldKnk, scTenifoldNet, SEIRfansy, SEMgraph, SemNeT, seqsetvis, sequenza, Seurat, Signac, SimDesign, SimEngine, slimrec, smacpod, SmCCNet, smerc, sNPLS, SortedEffects, spaMM, stplanr, Surrogate, svars, synergyfinder, TCA, TIGERr, tradeSeq, twosigma, ubms, uGMAR, ungroup, varycoef, vesselr, warbleR, WikidataR, wosr, zoomGroupStats
BiProbitPartial, clespr, clordr, ctmm, DiceOptim, discnorm, GPareto, hmi, KrigInv, lavaan, mvord, pGPx, ROCnReg, semTools, sigInt
afex, agriTutorial, car, doBy, eda4treeR, predictmeans, r2glmm, replicateBE, simr, StroupGLMM, tukeytrend, variancePartition
adaptDiag, ASpli, boot.heterogeneity, CAISEr, CALANGO, concurve, factorEx, gemini, ghypernet, glmmSeq, goldilocks, GREMLINS, mvMORPH, RAINBOWR, ROSeq, sccore, seqsetvis, SignacX, sobolnp, SP2000, vesselr, WhatIf
BasketballAnalyzeR, DRHotNet, raptr, RchivalTag, satin, shipunov, visvow
BiDAG, dce, eff2, epiNEM, kpcalg, mDAG, miRLAB, MRPC, pcgen, SID
AlpsNMR, chemometrics, copula, crmReg, debCAM, DetR, dmbc, ftsa, GEInter, latentcor, lcopula, Maaslin2, MAINT.Data, mixedCCA, MMDCopula, nvmix, oddstream, OutlierDM, PAsso, rmgarch, rospca, rpls, rrcov, rrcovHD, specmine, sprm, stray
ariExtra, bridger, daiR, doconv, eurlex, findR, gdiff, huito, iheiddown, JumpeR, mapscanner, OMICsPCA, pdfsearch, rcoreoa, readtext, speech, SwimmeR, tesseract, TextForecast, textreadr, vmeasur
ahnr, bigdatadist, COMPASS, FastKNN, hypervolume, ideq, iSDM, labelrank, minimaxdesign, msImpute, netcom, osmgeosample, rdi, scMerge, SDALGCP, seqgendiff, shattering, statTarget, Umatrix, UNCLES
hpiR, moreparty, oncrawlR, radiant.model, rmweather, xspliner
bnnSurvival, obliqueRSF, OSTE, pammtools, pcoxtime, survxai, timeROC
dvir, forrel, paramlink2, pedbuildr, segregatr
graph4lg, HACSim, HierDpart, mmod, PopGenReport, poppr, RAINBOWR, spider
DIFboost, DIFlasso, GSelection, hdnom, mispr, mvdalab, penalizedclr, pensim, predictionet, scRecover, splmm
broomExtra, bruceR, drhur, effectsize, ggstatsplot, modelbased, modelsummary, psycModel, report, sjPlot, sjstats, statsExpressions
GMZTests, HeckmanEM, methylclock, OMICsPCA, portfolioBacktest, rfinance, rmsfuns, RNASeqR, scRNAtools, Semblance, SlidingWindows, SMNCensReg, Trading
bipartite, brainGraph, bsseq, Clomial, codyn, cwm, HierDpart, iCAMP, MEAL, MiRKAT, mixAR, monoClust, NPC, npcure, NST, permuco, pRF, ProcMod, RAM, randomizationInference, rankdist, spaceNet, SYNCSA, VdgRsm
babette, beastier, BoSSA, BSS, coalescentMCMC, CommT, corHMM, DCLEAR, DIAlignR, dispRity, dowser, EnvNJ, genBaRcode, haplotypes, hisse, indelmiss, ips, liayson, LymphoSeq, markophylo, MesKit, microbial, nodeSub, OUwie, paleotree, pcmabc, philr, phyloregion, phytools, prewas, RAM, recluster, rwty, SeqFeatR, STraTUS, tanggle, taxize, timetree, TreeDist, TreeSearch, treespace, TreeTools
ADAPTS, AnnoProbe, artMS, bestridge, BioNetStat, cape, CB2, CHETAH, CIDER, cinaR, CINNA, CiteFuse, clustDRM, coca, conclus, covid19.analytics, CytoGLMM, CytoTree, dagLogo, DaMiRseq, dcortools, DEsubs, deTS, DExMA, dittoSeq, DRviaSPCN, eegc, epigraHMM, epihet, FAMILY, FateID, FlowSOM, FRASER, GEOexplorer, granulator, HiCcompare, hybridogram, iCellR, ideal, ILoReg, imcRtools, immunarch, ImmuneSpaceR, IRISFGM, klic, loci2path, Maaslin2, MetaIntegrator, mirTarRnaSeq, mitoClone2, MOFA2, monocle, multiHiCcompare, NanoStringNCTools, NPflow, OmicInt, omics, oppti, OUTRIDER, pcaExplorer, pcxn, phantasus, phemd, PhosR, Pigengene, POWSC, proBatch, profileplyr, psSubpathway, R3CPET, RaceID, RCAS, RLSeq, RNASeqR, rrvgo, RTN, RTNsurvival, RVenn, SC3, scMappR, SCORPIUS, sigFeature, SingleCellSignalR, slanter, SMDIC, spatialTIME, spicyR, statVisual, SubtypeDrug, systemPipeTools, timeSeq, tinyarray, TNBC.CMS, umiAnalyzer, VALERIE