abdiv, adaptiveGPCA, adegenet, adephylo, adiv, alakazam, animalcules, AnnotationBustR, aPCoA, arakno, autoGO, BAT, BayesSPsurv, beastier, beautier, betapart, BIEN, bioseq, bite, bnpsd, BoSSA, brranching, CALANGO, canaper, ccfindR, chemodiv, CluMSID, clusterExperiment, coil, colordistance, compcodeR, concatipede, copyseparator, covid19.analytics, CRABS, DAMOCLES, dartR, datelife, DCLEAR, DDD, debar, DHARMa, DIAlignR, dowser, ecospat, entropart, EnvNJ, EpiModel, epm, evobiR, evolvability, EvoPhylo, fastreeR, file2meco, FishPhyloMaker, fishtree, FossilSim, genBaRcode, geneHapR, geneplast, geomorph, ggmotif, ggmuller, ggrasp, ggtree, glinvci, GmicR, GOCompare, gquad, gromovlab, GUniFrac, HACSim, haplotypes, harrietr, HGC, hilldiv, hillR, HMPTrees, Hmsc, homals, HTSSIP, iCAMP, iCellR, idar, immunarch, indelmiss, infercnv, insect, ipADMIXTURE, itol.toolkit, jackalope, liayson, LinTInd, MACER, MAGNAMWAR, markophylo, MesKit, metacoder, mFD, mia, miaViz, MicrobiomeBenchmarkData, microbiomeDataSets, MicrobiotaProcess, microeco, ML.MSBD, MLVSBM, mmodely, MSA2dist, msaR, multilaterals, MultivariateAnalysis, mvSLOUCH, NicheBarcoding, nLTT, nodiv, NormalyzerDE, NST, numbat, OmaDB, openPrimeR, OpenTreeChronograms, oposSOM, oppr, outbreaker2, packFinder, paco, palaeoverse, PathoStat, PBD, pcmabc, PCMBase, PCPS, perfectphyloR, philr, phyext2, phylobase, phylocanvas, phylogram, phylopath, PhyloProfile, phyloregion, phyloseq, phylosignal, phylter, phyr, PhySortR, PIGShift, pirouette, Plasmidprofiler, POMS, poolfstat, popkin, poppr, POSTm, POUMM, prewas, primerTree, prioritizr, PVR, QSutils, Quartet, RAINBOWR, rapidphylo, Rarefy, ratematrix, refdb, restez, RevGadgets, Revticulate, rhierbaps, rKOMICS, Rogue, rotl, rr2, rrnni, RRphylo, RRPP, Rtapas, Rtropical, scAnnotatR, scBubbletree, scistreer, secsse, SeqFeatR, sharpshootR, shazam, shinyTempSignal, sidier, SigTree, singleCellTK, SiPhyNetwork, sitePath, slendr, slouch, SPARTAAS, spider, STEPCAM, STraTUS, stylo, supraHex, Sysrecon, systemPipeTools, tanggle, tapnet, taxize, TBRDist, tidytree, TransPhylo, TreeAndLeaf, treebalance, treeDA, treedata.table, TreeDiagram, TreeDist, treeio, treekoR, treenomial, TreeSearch, TreeSimGM, treestructure, TreeSummarizedExperiment, vcfR, VERSO, yatah