Note: the module "R" cannot be unloaded because it was not loaded.

WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-03-26 r88060) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
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> cargs <- commandArgs(trailingOnly=TRUE)
> if(length(cargs)==0){
+   ## before running interactively, make sure to start emacs/R with
+   ## environment defined in /scratch/...check_one.sh, particularly
+   ## R_LIBS_USER=/tmp/... otherwise we get error when installing
+   ## data.table.
+   base <- "/scratch/th798/data.table-revdeps/*"
+   cargs <- c(
+     Sys.glob(file.path(base,"deps.csv")),
+     "349",
+     Sys.glob(file.path(base, "data.table_release_*tar.gz")),
+     Sys.glob(file.path(base, "data.table_master_*tar.gz"))
+   )
+ }
> names(cargs) <- c("deps.csv", "task.str", "release", "master")
> dput(cargs)
c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-27/deps.csv", 
task.str = "73", release = "/scratch/th798/data.table-revdeps/2025-03-27/data.table_release_1.17.0.tar.gz", 
master = "/scratch/th798/data.table-revdeps/2025-03-27/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz"
)
> (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers
[1] "/tmp/th798/16151456/R-devel/73"
> if(requireNamespace("R.cache"))R.cache::getCachePath()
Loading required namespace: R.cache
[1] "/tmp/th798/16151456/R-devel/73/R.cache"
> task.id <- as.integer(cargs[["task.str"]])
> deps.df <- read.csv(cargs[["deps.csv"]])
> (rev.dep <- deps.df$Package[task.id])
[1] "batchtools"
> job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id)
> setwd(task.dir)
> .libPaths()
[1] "/tmp/th798/16151456/R-devel/73/library"
[2] "/projects/genomic-ml/R/R-devel/library"
> options(repos=c(#this should be in ~/.Rprofile too.
+   CRAN="http://cloud.r-project.org"))
> print(Sys.time())
[1] "2025-03-27 00:25:49 MST"
> install.time <- system.time({
+   install.packages(rev.dep, dep=TRUE)
+ })
Installing package into '/tmp/th798/16151456/R-devel/73/library'
(as 'lib' is unspecified)
also installing the dependencies 'debugme', 'doMPI', 'future.batchtools', 'parallelMap'

trying URL 'http://cloud.r-project.org/src/contrib/debugme_1.2.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/doMPI_0.2.2.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/future.batchtools_0.12.1.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/parallelMap_1.5.1.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/batchtools_0.9.17.tar.gz'
* installing *source* package 'debugme' ...
** this is package 'debugme' version '1.2.0'
** package 'debugme' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (debugme)
* installing *source* package 'doMPI' ...
** this is package 'doMPI' version '0.2.2'
** package 'doMPI' successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (doMPI)
* installing *source* package 'parallelMap' ...
** this is package 'parallelMap' version '1.5.1'
** package 'parallelMap' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (parallelMap)
* installing *source* package 'batchtools' ...
** this is package 'batchtools' version '0.9.17'
** package 'batchtools' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c binpack.c -o binpack.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c count_not_missing.c -o count_not_missing.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fill_gaps.c -o fill_gaps.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c lpt.c -o lpt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o batchtools.so binpack.o count_not_missing.o fill_gaps.o init.o lpt.o
installing to /tmp/th798/16151456/R-devel/73/library/00LOCK-batchtools/00new/batchtools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (batchtools)
* installing *source* package 'future.batchtools' ...
** this is package 'future.batchtools' version '0.12.1'
** package 'future.batchtools' successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (future.batchtools)

The downloaded source packages are in
	'/tmp/th798/16151456/RtmpWIaZW8/downloaded_packages'
> cat("Time to install revdep:\n")
Time to install revdep:
> print(install.time)
   user  system elapsed 
 20.258   1.838  27.774 
> print(Sys.time())
[1] "2025-03-27 00:26:17 MST"
> downloaded_packages <- file.path(
+   tempdir(),
+   "downloaded_packages")
> dl.glob <- file.path(
+   downloaded_packages,
+   paste0(rev.dep,"_*.tar.gz"))
> rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob))
> colnames(rev.dep.dl.row) <- c("pkg","path")
> rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE)
> pkg.Rcheck <- paste0(rev.dep, ".Rcheck")
> 
> proj.dir <- "~/genomic-ml/data.table-revdeps"
> source(file.path(proj.dir, "myStatus.R"))
> Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]]))
> dir.create(Rvers, showWarnings=FALSE)
> Rcheck.list <- list()
> for(dt.version.short in c("release", "master")){
+   dt.tar.gz <- cargs[[dt.version.short]]
+   dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz)
+   print(Sys.time())
+   install.packages(dt.tar.gz, repos=NULL)
+   print(Sys.time())
+   check.cmd <- get_check_cmd(rev.dep.release.tar.gz)
+   system(check.cmd)
+   print(Sys.time())
+   dest.Rcheck <- file.path(
+     Rvers,
+     paste0(dt.version, ".Rcheck"))
+   unlink(dest.Rcheck, recursive=TRUE)
+   file.rename(pkg.Rcheck, dest.Rcheck)
+   Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log")
+ }
[1] "2025-03-27 00:26:17 MST"
Installing package into '/tmp/th798/16151456/R-devel/73/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.17.0'
** package 'data.table' successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16151456/R-devel/73/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-27 00:26:35 MST"
* using log directory '/tmp/th798/16151456/R-devel/73/batchtools.Rcheck'
* using R Under development (unstable) (2025-03-26 r88060)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'batchtools/DESCRIPTION' ... OK
* this is package 'batchtools' version '0.9.17'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'batchtools' can be installed ... OK
* used C compiler: 'gcc (Spack GCC) 12.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) JobCollection.Rd:41: Lost braces
    41 |  \item{namespaces}{code{character} with required packages to load via \code{\link[base]{requireNamespace}}.}
       |                        ^
checkRd: (-1) addAlgorithm.Rd:31: Lost braces
    31 | Algorithms are functions which get the code{data} part as well as the problem instance (the return value of the
       |                                            ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'batchtools-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: makeJob
> ### Title: Jobs and Experiments
> ### Aliases: makeJob Job Experiment
> 
> ### ** Examples
> 
> ## Don't show: 
>  batchtools:::example_push_temp(1) 
> ## End(Don't show)
> tmp = makeRegistry(file.dir = NA, make.default = FALSE)
Sourcing configuration file '~/.batchtools.conf.R' ...
Created registry in '/tmp/th798/16151456/RtmpiVwXyk/registry38a974f27be17' using cluster functions 'Slurm'
> batchMap(function(x, y) x + y, x = 1:2, more.args = list(y = 99), reg = tmp)
Adding 2 jobs ...
> submitJobs(resources = list(foo = "bar"), reg = tmp)
Submitting 2 jobs in 2 chunks using cluster functions 'Slurm' ...
Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # setting R_TESTS to empty string because of
  > # https://github.com/hadley/testthat/issues/144
  > # revert this when that issue in R is fixed.
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  > library(batchtools)
  > 
  > test_check("batchtools")
  ### [bt]: Setting seed to 23573 ...
  ### [bt]: Setting seed to 23575 ...
  ### [bt]: Setting seed to 23574 ...
  [ FAIL 47 | WARN 219 | SKIP 4 | PASS 1002 ]
  
  == Skipped tests (4) ===========================================================
  * On CRAN (3): 'test_ClusterFunctionsSSH.R:4:3', 'test_memory.R:4:3',
    'test_sweepRegistry.R:37:3'
  * manual test (1): 'test_manual.R:2:3'
  
  == Failed tests ================================================================
  -- Error ('test_ClusterFunctions.R:83:3'): Special chars in directory names ----
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_ClusterFunctions.R:83:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_ClusterFunctions.R:96:3'): Export of environment variable DEBUGME --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_ClusterFunctions.R:96:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Job.R:5:3'): Job -----------------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1, resources = list(foo = "bar")) at test_Job.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Job.R:60:3'): External directory is created --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_Job.R:60:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Problem.R:54:3'): instance caching -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_Problem.R:54:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Registry.R:132:3'): clearRegistry ------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_Registry.R:132:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Registry.R:151:3'): read only mode -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = 1:3, reg) at test_Registry.R:151:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_addExperiments.R:15:3'): addExperiments handles parameters correctly --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_addExperiments.R:15:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchMap.R:47:3'): batchMap with unnamed more.args (#267) ------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_batchMap.R:47:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchReduce.R:7:3'): batchReduce -------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = ids, reg = reg) at test_batchReduce.R:7:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchReduce.R:20:3'): batchReduce w/ more.args -----------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_batchReduce.R:20:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_btlapply.R:4:3'): btlapply -------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_btlapply.R:4:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::btlapply(...)
   5.   \-batchtools::submitJobs(ids = ids, resources = resources, reg = reg)
   6.     \-batchtools:::stopf(...)
  -- Error ('test_btlapply.R:16:3'): btmapply ------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_btlapply.R:16:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::btmapply(...)
   5.   \-batchtools::submitJobs(ids = ids, resources = resources, reg = reg)
   6.     \-batchtools:::stopf(...)
  -- Error ('test_chunk.R:90:3'): caching works ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_chunk.R:90:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_doJobCollection.R:49:3'): doJobCollection signals slave errors --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_doJobCollection.R:49:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_estimateRuntimes.R:12:3'): estimateRuntimes --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids = s.chunk(ids)) at test_estimateRuntimes.R:12:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_export.R:23:3'): export works ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_export.R:23:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:35:3'): find[Status] --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_findJobs.R:35:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:55:3'): Subsetting ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_findJobs.R:55:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:83:5'): findOnSystem --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_findJobs.R:81:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(reg = reg, ids = s.chunk(ids)) at test_findJobs.R:83:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_foreach.R:8:3'): foreach/seq -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_foreach.R:8:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_foreach.R:25:3'): foreach/multicore ----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_foreach.R:25:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getErrorMessages.R:5:3'): getErrorMessages ---------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:4) at test_getErrorMessages.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:35:3'): getJobTable.Registry ---------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg, ids = s.chunk(ids), resources = list(my.walltime = 42L)) at test_getJobTable.R:35:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:90:3'): getJobPars with repls --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = ids, reg = reg) at test_getJobTable.R:90:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:137:3'): experiment registry with vector parameters --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = tmp) at test_getJobTable.R:137:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getStatus.R:5:3'): getStatus -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:5) at test_getStatus.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_grepLogs.R:21:3'): (code run outside of `test_that()`) ---------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_grepLogs.R:1:1
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools:::submitAndWait(reg, ids[1:4]) at test_grepLogs.R:21:3
   5.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   6.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   7.   |   \-base::force(code)
   8.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   9.     \-batchtools:::stopf(...)
  -- Error ('test_hooks.R:17:3'): hooks ------------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_hooks.R:17:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_killJobs.R:7:3'): killJobs -------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(submitJobs(1, reg = reg)) at test_killJobs.R:7:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(1, reg = reg)
   5.   \-batchtools:::stopf(...)
  -- Error ('test_mergeRegistries.R:12:3'): mergeRegistries ----------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(target, data.table(job.id = 1:4, chunk = 1L)) at test_mergeRegistries.R:12:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:14:3'): pm/multicore -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_parallelMap.R:14:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:25:3'): pm/socket --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_parallelMap.R:25:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:37:3'): parallelMap works with batchtools --------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-parallelMap::parallelMap(function(x, y) x + y, x = 1:2, y = 1) at test_parallelMap.R:37:3
   2.   \-batchtools::submitJobs(...)
   3.     \-batchtools:::stopf(...)
  -- Error ('test_reduceResults.R:5:3'): (code run outside of `test_that()`) -----
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-base::suppressMessages(...) at test_reduceResults.R:1:1
   2. | \-base::withCallingHandlers(...)
   3. \-batchtools:::submitAndWait(reg, 1:3) at test_reduceResults.R:5:3
   4.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   5.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   6.   |   \-base::force(code)
   7.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   8.     \-batchtools:::stopf(...)
  -- Error ('test_resetJobs.R:9:3'): resetJobs -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:3) at test_resetJobs.R:9:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_resetJobs.R:39:3'): functions produce error after resetting jobs --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:3) at test_resetJobs.R:39:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_seed.R:30:3'): Problem and Algorithm seed ----------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_seed.R:30:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_seed.R:62:3'): Seed is correctly reported (#203) ---------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_seed.R:62:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_showLog.R:6:3'): showLog/getLog --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_showLog.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_showLog.R:31:3'): empty log files ------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_showLog.R:31:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_submitJobs.R:6:3'): submitJobs ---------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:2, resources = list(foo = "bar")) at test_submitJobs.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_submitJobs.R:36:3'): per job resources -------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 1. Output: 'sbatch: error: Invalid numeric value "" for --cpus-per-task.'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids = ids) at test_submitJobs.R:36:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_sweepRegistry.R:6:3'): sweepRegistry ---------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1, resources = list(foo = 1)) at test_sweepRegistry.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:6:5'): waitForJobs -------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:5:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids, reg = reg) at test_waitForJobs.R:6:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:20:5'): waitForJobs: detection of expired jobs ---
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:19:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids, reg = reg) at test_waitForJobs.R:20:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:31:5'): waitForJobs: filter out unsubmitted jobs --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:30:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids = 1, reg = reg) at test_waitForJobs.R:31:5
   5.   \-batchtools:::stopf(...)
  
  [ FAIL 47 | WARN 219 | SKIP 4 | PASS 1002 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building 'batchtools.Rmd' using rmarkdown

Quitting from lines 228-229 [unnamed-chunk-10] (batchtools.Rmd)
Error: processing vignette 'batchtools.Rmd' failed with diagnostics:
Fatal error occurred: 101. Command 'sbatch' produced exit code 1. Output: 'sbatch: error: Invalid numeric value "" for --cpus-per-task.'
--- failed re-building 'batchtools.Rmd'

SUMMARY: processing the following file failed:
  'batchtools.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs, 1 NOTE
See
  '/tmp/th798/16151456/R-devel/73/batchtools.Rcheck/00check.log'
for details.

[1] "2025-03-27 00:35:35 MST"
[1] "2025-03-27 00:35:35 MST"
Installing package into '/tmp/th798/16151456/R-devel/73/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.17.99'
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16151456/R-devel/73/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-27 00:36:33 MST"
* using log directory '/tmp/th798/16151456/R-devel/73/batchtools.Rcheck'
* using R Under development (unstable) (2025-03-26 r88060)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'batchtools/DESCRIPTION' ... OK
* this is package 'batchtools' version '0.9.17'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'batchtools' can be installed ... OK
* used C compiler: 'gcc (Spack GCC) 12.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) JobCollection.Rd:41: Lost braces
    41 |  \item{namespaces}{code{character} with required packages to load via \code{\link[base]{requireNamespace}}.}
       |                        ^
checkRd: (-1) addAlgorithm.Rd:31: Lost braces
    31 | Algorithms are functions which get the code{data} part as well as the problem instance (the return value of the
       |                                            ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'batchtools-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: makeJob
> ### Title: Jobs and Experiments
> ### Aliases: makeJob Job Experiment
> 
> ### ** Examples
> 
> ## Don't show: 
>  batchtools:::example_push_temp(1) 
> ## End(Don't show)
> tmp = makeRegistry(file.dir = NA, make.default = FALSE)
Sourcing configuration file '~/.batchtools.conf.R' ...
Created registry in '/tmp/th798/16151456/RtmpuqgJEh/registry430cf85cae26' using cluster functions 'Slurm'
> batchMap(function(x, y) x + y, x = 1:2, more.args = list(y = 99), reg = tmp)
Adding 2 jobs ...
> submitJobs(resources = list(foo = "bar"), reg = tmp)
Submitting 2 jobs in 2 chunks using cluster functions 'Slurm' ...
Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # setting R_TESTS to empty string because of
  > # https://github.com/hadley/testthat/issues/144
  > # revert this when that issue in R is fixed.
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  > library(batchtools)
  > 
  > test_check("batchtools")
  ### [bt]: Setting seed to 23573 ...
  ### [bt]: Setting seed to 23575 ...
  ### [bt]: Setting seed to 23574 ...
  [ FAIL 47 | WARN 219 | SKIP 4 | PASS 1002 ]
  
  == Skipped tests (4) ===========================================================
  * On CRAN (3): 'test_ClusterFunctionsSSH.R:4:3', 'test_memory.R:4:3',
    'test_sweepRegistry.R:37:3'
  * manual test (1): 'test_manual.R:2:3'
  
  == Failed tests ================================================================
  -- Error ('test_ClusterFunctions.R:83:3'): Special chars in directory names ----
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_ClusterFunctions.R:83:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_ClusterFunctions.R:96:3'): Export of environment variable DEBUGME --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_ClusterFunctions.R:96:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Job.R:5:3'): Job -----------------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1, resources = list(foo = "bar")) at test_Job.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Job.R:60:3'): External directory is created --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_Job.R:60:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Problem.R:54:3'): instance caching -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_Problem.R:54:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Registry.R:132:3'): clearRegistry ------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_Registry.R:132:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Registry.R:151:3'): read only mode -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = 1:3, reg) at test_Registry.R:151:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_addExperiments.R:15:3'): addExperiments handles parameters correctly --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_addExperiments.R:15:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchMap.R:47:3'): batchMap with unnamed more.args (#267) ------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_batchMap.R:47:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchReduce.R:7:3'): batchReduce -------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = ids, reg = reg) at test_batchReduce.R:7:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchReduce.R:20:3'): batchReduce w/ more.args -----------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_batchReduce.R:20:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_btlapply.R:4:3'): btlapply -------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_btlapply.R:4:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::btlapply(...)
   5.   \-batchtools::submitJobs(ids = ids, resources = resources, reg = reg)
   6.     \-batchtools:::stopf(...)
  -- Error ('test_btlapply.R:16:3'): btmapply ------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_btlapply.R:16:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::btmapply(...)
   5.   \-batchtools::submitJobs(ids = ids, resources = resources, reg = reg)
   6.     \-batchtools:::stopf(...)
  -- Error ('test_chunk.R:90:3'): caching works ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_chunk.R:90:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_doJobCollection.R:49:3'): doJobCollection signals slave errors --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_doJobCollection.R:49:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_estimateRuntimes.R:12:3'): estimateRuntimes --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids = s.chunk(ids)) at test_estimateRuntimes.R:12:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_export.R:23:3'): export works ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_export.R:23:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:35:3'): find[Status] --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_findJobs.R:35:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:55:3'): Subsetting ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_findJobs.R:55:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:83:5'): findOnSystem --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_findJobs.R:81:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(reg = reg, ids = s.chunk(ids)) at test_findJobs.R:83:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_foreach.R:8:3'): foreach/seq -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_foreach.R:8:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_foreach.R:25:3'): foreach/multicore ----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_foreach.R:25:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getErrorMessages.R:5:3'): getErrorMessages ---------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:4) at test_getErrorMessages.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:35:3'): getJobTable.Registry ---------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg, ids = s.chunk(ids), resources = list(my.walltime = 42L)) at test_getJobTable.R:35:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:90:3'): getJobPars with repls --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = ids, reg = reg) at test_getJobTable.R:90:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:137:3'): experiment registry with vector parameters --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = tmp) at test_getJobTable.R:137:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getStatus.R:5:3'): getStatus -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:5) at test_getStatus.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_grepLogs.R:21:3'): (code run outside of `test_that()`) ---------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_grepLogs.R:1:1
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools:::submitAndWait(reg, ids[1:4]) at test_grepLogs.R:21:3
   5.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   6.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   7.   |   \-base::force(code)
   8.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   9.     \-batchtools:::stopf(...)
  -- Error ('test_hooks.R:17:3'): hooks ------------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_hooks.R:17:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_killJobs.R:7:3'): killJobs -------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(submitJobs(1, reg = reg)) at test_killJobs.R:7:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(1, reg = reg)
   5.   \-batchtools:::stopf(...)
  -- Error ('test_mergeRegistries.R:12:3'): mergeRegistries ----------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(target, data.table(job.id = 1:4, chunk = 1L)) at test_mergeRegistries.R:12:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:14:3'): pm/multicore -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_parallelMap.R:14:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:25:3'): pm/socket --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_parallelMap.R:25:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:37:3'): parallelMap works with batchtools --------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-parallelMap::parallelMap(function(x, y) x + y, x = 1:2, y = 1) at test_parallelMap.R:37:3
   2.   \-batchtools::submitJobs(...)
   3.     \-batchtools:::stopf(...)
  -- Error ('test_reduceResults.R:5:3'): (code run outside of `test_that()`) -----
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-base::suppressMessages(...) at test_reduceResults.R:1:1
   2. | \-base::withCallingHandlers(...)
   3. \-batchtools:::submitAndWait(reg, 1:3) at test_reduceResults.R:5:3
   4.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   5.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   6.   |   \-base::force(code)
   7.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   8.     \-batchtools:::stopf(...)
  -- Error ('test_resetJobs.R:9:3'): resetJobs -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:3) at test_resetJobs.R:9:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_resetJobs.R:39:3'): functions produce error after resetting jobs --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:3) at test_resetJobs.R:39:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_seed.R:30:3'): Problem and Algorithm seed ----------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_seed.R:30:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_seed.R:62:3'): Seed is correctly reported (#203) ---------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_seed.R:62:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_showLog.R:6:3'): showLog/getLog --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_showLog.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_showLog.R:31:3'): empty log files ------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_showLog.R:31:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_submitJobs.R:6:3'): submitJobs ---------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:2, resources = list(foo = "bar")) at test_submitJobs.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_submitJobs.R:36:3'): per job resources -------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 1. Output: 'sbatch: error: Invalid numeric value "" for --cpus-per-task.'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids = ids) at test_submitJobs.R:36:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_sweepRegistry.R:6:3'): sweepRegistry ---------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1, resources = list(foo = 1)) at test_sweepRegistry.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:6:5'): waitForJobs -------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:5:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids, reg = reg) at test_waitForJobs.R:6:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:20:5'): waitForJobs: detection of expired jobs ---
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:19:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids, reg = reg) at test_waitForJobs.R:20:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:31:5'): waitForJobs: filter out unsubmitted jobs --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:30:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids = 1, reg = reg) at test_waitForJobs.R:31:5
   5.   \-batchtools:::stopf(...)
  
  [ FAIL 47 | WARN 219 | SKIP 4 | PASS 1002 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building 'batchtools.Rmd' using rmarkdown

Quitting from lines 228-229 [unnamed-chunk-10] (batchtools.Rmd)
Error: processing vignette 'batchtools.Rmd' failed with diagnostics:
Fatal error occurred: 101. Command 'sbatch' produced exit code 1. Output: 'sbatch: error: Invalid numeric value "" for --cpus-per-task.'
--- failed re-building 'batchtools.Rmd'

SUMMARY: processing the following file failed:
  'batchtools.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs, 1 NOTE
See
  '/tmp/th798/16151456/R-devel/73/batchtools.Rcheck/00check.log'
for details.

[1] "2025-03-27 00:48:03 MST"
> system(paste(c("diff -u", Rcheck.list), collapse=" "))
--- R_Under_development_unstable_2025-03-26_r88060/release_1.17.0.Rcheck/00check.log	2025-03-27 00:35:35.081974976 -0700
+++ R_Under_development_unstable_2025-03-26_r88060/master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.Rcheck/00check.log	2025-03-27 00:48:03.781096845 -0700
@@ -79,7 +79,7 @@
 > ## End(Don't show)
 > tmp = makeRegistry(file.dir = NA, make.default = FALSE)
 Sourcing configuration file '~/.batchtools.conf.R' ...
-Created registry in '/tmp/th798/16151456/RtmpiVwXyk/registry38a974f27be17' using cluster functions 'Slurm'
+Created registry in '/tmp/th798/16151456/RtmpuqgJEh/registry430cf85cae26' using cluster functions 'Slurm'
 > batchMap(function(x, y) x + y, x = 1:2, more.args = list(y = 99), reg = tmp)
 Adding 2 jobs ...
 > submitJobs(resources = list(foo = "bar"), reg = tmp)
> library(data.table, lib.loc=R.home("library"))
> (sig.diff.dt <- myDiff(Rvers))
Key: <checking>
Empty data.table (0 rows and 3 cols): checking,master,release
> 
> ## If there are significant differences, use git bisect to find when
> ## they started.
> if(nrow(sig.diff.dt)){
+   dt.git <- file.path(task.dir, "data.table.git")
+   system(paste("cd ~/R/data.table && git fetch --tags"))
+   system(paste("git clone ~/R/data.table", dt.git))
+   release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]])
+   rev.parse.cmd <- paste(
+     "cd", dt.git, "&& git rev-parse master")
+   master.sha <- system(rev.parse.cmd, intern=TRUE)
+   merge.base.cmd <- paste(
+     "cd", dt.git, "&& git merge-base master", release.tag)
+   merge.base.sha <- system(merge.base.cmd, intern=TRUE)
+   old.sha <- merge.base.sha
+   run_R <- file.path(proj.dir, "install_dt_then_check_dep.R")
+   sig.diff.dt[, first.bad.commit := NA_character_]
+   sig.diff.dt[, comments := NA_character_]
+   for(diff.i in 1:nrow(sig.diff.dt)){
+     sig.diff.row <- sig.diff.dt[diff.i]
+     bisect.cmd <- paste(
+       "cd", dt.git, "&&",
+       "git bisect start &&",
+       "git bisect old", old.sha, "&&",
+       "git bisect new master &&",
+       "git bisect run",
+       R.home('bin/Rscript'),
+       run_R,
+       shQuote(sig.diff.row$checking),
+       sig.diff.row$release,
+       rev.dep.release.tar.gz,
+       release.tag)
+     print(bisect.cmd)
+     bisect.out <- system(bisect.cmd, intern=TRUE)
+     cat(bisect.out,sep="\n")
+     if(is.null(attr(bisect.out,"status"))){
+       first.bad.sha <- nc::capture_all_str(
+         bisect.out,
+         sha="[0-9a-f]+",
+         " is the first new commit")$sha
+       parent.cmd <- paste(
+         "cd ~/R/data.table && git log --pretty=%P -n 1",
+         first.bad.sha)
+       parent.sha <- system(parent.cmd, intern=TRUE)
+       sig.diff.dt[diff.i, first.bad.commit := first.bad.sha]
+       parent.msg <- paste0("parent=", parent.sha)
+       this.comment <- if(parent.sha==old.sha){
+         paste(parent.msg, "same as git bisect old")
+       }else if(first.bad.sha==master.sha){
+         paste("same as git bisect new=master,", parent.msg)
+       }else{
+         parent.msg
+       }
+       sig.diff.dt[diff.i, comments := this.comment]
+     }
+   }
+   ## add CRAN column.
+   sig.diff.dt[, CRAN := {
+     flavor <- get_flavor(Rvers)
+     details <- data.table(flavor=unique(flavor))[, {
+       base <- "https://www.r-project.org/nosvn/R.check/"
+       u <- paste0(base, flavor, "/", rev.dep, "-00check.txt")
+       check.txt <- tempfile()
+       tryCatch({
+         download.file(u, check.txt, quiet=TRUE)
+       }, error=function(e){
+         NULL
+       })
+       check.lines <- if(file.exists(check.txt)){
+         readLines(check.txt,encoding="UTF-8")
+       }else{
+         ""
+       }
+       repl.lines <- gsub("[\u2018\u2019]", "'", check.lines)
+       ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C.
+       myStatus(line.vec=repl.lines)
+     }, by=flavor]
+     select.dt <- data.table(flavor, checking)
+     details[select.dt, msg, on=.(flavor, checking)]
+   }]
+   dir.create(file.path(job.dir, Rvers))
+   diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv")
+   data.table::fwrite(sig.diff.dt, diffs.csv)
+   print(sig.diff.dt)
+ }
> 
WARNING: ignoring environment value of R_HOME

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> cargs <- commandArgs(trailingOnly=TRUE)
> if(length(cargs)==0){
+   ## before running interactively, make sure to start emacs/R with
+   ## environment defined in /scratch/...check_one.sh, particularly
+   ## R_LIBS_USER=/tmp/... otherwise we get error when installing
+   ## data.table.
+   base <- "/scratch/th798/data.table-revdeps/*"
+   cargs <- c(
+     Sys.glob(file.path(base,"deps.csv")),
+     "349",
+     Sys.glob(file.path(base, "data.table_release_*tar.gz")),
+     Sys.glob(file.path(base, "data.table_master_*tar.gz"))
+   )
+ }
> names(cargs) <- c("deps.csv", "task.str", "release", "master")
> dput(cargs)
c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-27/deps.csv", 
task.str = "73", release = "/scratch/th798/data.table-revdeps/2025-03-27/data.table_release_1.17.0.tar.gz", 
master = "/scratch/th798/data.table-revdeps/2025-03-27/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz"
)
> (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers
[1] "/tmp/th798/16151456/R-release/73"
> if(requireNamespace("R.cache"))R.cache::getCachePath()
Loading required namespace: R.cache
[1] "/tmp/th798/16151456/R-release/73/R.cache"
> task.id <- as.integer(cargs[["task.str"]])
> deps.df <- read.csv(cargs[["deps.csv"]])
> (rev.dep <- deps.df$Package[task.id])
[1] "batchtools"
> job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id)
> setwd(task.dir)
> .libPaths()
[1] "/tmp/th798/16151456/R-release/73/library"
[2] "/projects/genomic-ml/R/R-release/library"
> options(repos=c(#this should be in ~/.Rprofile too.
+   CRAN="http://cloud.r-project.org"))
> print(Sys.time())
[1] "2025-03-27 00:48:23 MST"
> install.time <- system.time({
+   install.packages(rev.dep, dep=TRUE)
+ })
Installing package into '/tmp/th798/16151456/R-release/73/library'
(as 'lib' is unspecified)
also installing the dependencies 'debugme', 'doMPI', 'future.batchtools', 'parallelMap'

trying URL 'http://cloud.r-project.org/src/contrib/debugme_1.2.0.tar.gz'
Content type 'application/x-gzip' length 14212 bytes (13 KB)
==================================================
downloaded 13 KB

trying URL 'http://cloud.r-project.org/src/contrib/doMPI_0.2.2.tar.gz'
Content type 'application/x-gzip' length 222588 bytes (217 KB)
==================================================
downloaded 217 KB

trying URL 'http://cloud.r-project.org/src/contrib/future.batchtools_0.12.1.tar.gz'
Content type 'application/x-gzip' length 60158 bytes (58 KB)
==================================================
downloaded 58 KB

trying URL 'http://cloud.r-project.org/src/contrib/parallelMap_1.5.1.tar.gz'
Content type 'application/x-gzip' length 29651 bytes (28 KB)
==================================================
downloaded 28 KB

trying URL 'http://cloud.r-project.org/src/contrib/batchtools_0.9.17.tar.gz'
Content type 'application/x-gzip' length 716399 bytes (699 KB)
==================================================
downloaded 699 KB

* installing *source* package 'debugme' ...
** package 'debugme' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (debugme)
* installing *source* package 'doMPI' ...
** package 'doMPI' successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (doMPI)
* installing *source* package 'parallelMap' ...
** package 'parallelMap' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (parallelMap)
* installing *source* package 'batchtools' ...
** package 'batchtools' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c binpack.c -o binpack.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c count_not_missing.c -o count_not_missing.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fill_gaps.c -o fill_gaps.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c lpt.c -o lpt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o batchtools.so binpack.o count_not_missing.o fill_gaps.o init.o lpt.o
installing to /tmp/th798/16151456/R-release/73/library/00LOCK-batchtools/00new/batchtools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (batchtools)
* installing *source* package 'future.batchtools' ...
** package 'future.batchtools' successfully unpacked and MD5 sums checked
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (future.batchtools)

The downloaded source packages are in
	'/tmp/th798/16151456/Rtmprhe657/downloaded_packages'
> cat("Time to install revdep:\n")
Time to install revdep:
> print(install.time)
   user  system elapsed 
 20.878   1.771 123.859 
> print(Sys.time())
[1] "2025-03-27 00:50:27 MST"
> downloaded_packages <- file.path(
+   tempdir(),
+   "downloaded_packages")
> dl.glob <- file.path(
+   downloaded_packages,
+   paste0(rev.dep,"_*.tar.gz"))
> rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob))
> colnames(rev.dep.dl.row) <- c("pkg","path")
> rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE)
> pkg.Rcheck <- paste0(rev.dep, ".Rcheck")
> 
> proj.dir <- "~/genomic-ml/data.table-revdeps"
> source(file.path(proj.dir, "myStatus.R"))
> Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]]))
> dir.create(Rvers, showWarnings=FALSE)
> Rcheck.list <- list()
> for(dt.version.short in c("release", "master")){
+   dt.tar.gz <- cargs[[dt.version.short]]
+   dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz)
+   print(Sys.time())
+   install.packages(dt.tar.gz, repos=NULL)
+   print(Sys.time())
+   check.cmd <- get_check_cmd(rev.dep.release.tar.gz)
+   system(check.cmd)
+   print(Sys.time())
+   dest.Rcheck <- file.path(
+     Rvers,
+     paste0(dt.version, ".Rcheck"))
+   unlink(dest.Rcheck, recursive=TRUE)
+   file.rename(pkg.Rcheck, dest.Rcheck)
+   Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log")
+ }
[1] "2025-03-27 00:50:27 MST"
Installing package into '/tmp/th798/16151456/R-release/73/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** package 'data.table' successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16151456/R-release/73/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-27 00:50:45 MST"
* using log directory '/tmp/th798/16151456/R-release/73/batchtools.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'batchtools/DESCRIPTION' ... OK
* this is package 'batchtools' version '0.9.17'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'batchtools' can be installed ... OK
* used C compiler: 'gcc (Spack GCC) 12.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) JobCollection.Rd:41: Lost braces
    41 |  \item{namespaces}{code{character} with required packages to load via \code{\link[base]{requireNamespace}}.}
       |                        ^
checkRd: (-1) addAlgorithm.Rd:31: Lost braces
    31 | Algorithms are functions which get the code{data} part as well as the problem instance (the return value of the
       |                                            ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'batchtools-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: makeJob
> ### Title: Jobs and Experiments
> ### Aliases: makeJob Job Experiment
> 
> ### ** Examples
> 
> ## Don't show: 
>  batchtools:::example_push_temp(1) 
> ## End(Don't show)
> tmp = makeRegistry(file.dir = NA, make.default = FALSE)
Sourcing configuration file '~/.batchtools.conf.R' ...
Created registry in '/tmp/th798/16151456/Rtmp8fWOy2/registry5910c7d632867' using cluster functions 'Slurm'
> batchMap(function(x, y) x + y, x = 1:2, more.args = list(y = 99), reg = tmp)
Adding 2 jobs ...
> submitJobs(resources = list(foo = "bar"), reg = tmp)
Submitting 2 jobs in 2 chunks using cluster functions 'Slurm' ...
Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # setting R_TESTS to empty string because of
  > # https://github.com/hadley/testthat/issues/144
  > # revert this when that issue in R is fixed.
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  > library(batchtools)
  > 
  > test_check("batchtools")
  ### [bt]: Setting seed to 23573 ...
  ### [bt]: Setting seed to 23575 ...
  ### [bt]: Setting seed to 23574 ...
  [ FAIL 47 | WARN 219 | SKIP 4 | PASS 1002 ]
  
  == Skipped tests (4) ===========================================================
  * On CRAN (3): 'test_ClusterFunctionsSSH.R:4:3', 'test_memory.R:4:3',
    'test_sweepRegistry.R:37:3'
  * manual test (1): 'test_manual.R:2:3'
  
  == Failed tests ================================================================
  -- Error ('test_ClusterFunctions.R:83:3'): Special chars in directory names ----
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_ClusterFunctions.R:83:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_ClusterFunctions.R:96:3'): Export of environment variable DEBUGME --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_ClusterFunctions.R:96:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Job.R:5:3'): Job -----------------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1, resources = list(foo = "bar")) at test_Job.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Job.R:60:3'): External directory is created --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_Job.R:60:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Problem.R:54:3'): instance caching -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_Problem.R:54:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Registry.R:132:3'): clearRegistry ------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_Registry.R:132:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Registry.R:151:3'): read only mode -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = 1:3, reg) at test_Registry.R:151:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_addExperiments.R:15:3'): addExperiments handles parameters correctly --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_addExperiments.R:15:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchMap.R:47:3'): batchMap with unnamed more.args (#267) ------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_batchMap.R:47:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchReduce.R:7:3'): batchReduce -------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = ids, reg = reg) at test_batchReduce.R:7:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchReduce.R:20:3'): batchReduce w/ more.args -----------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_batchReduce.R:20:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_btlapply.R:4:3'): btlapply -------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_btlapply.R:4:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::btlapply(...)
   5.   \-batchtools::submitJobs(ids = ids, resources = resources, reg = reg)
   6.     \-batchtools:::stopf(...)
  -- Error ('test_btlapply.R:16:3'): btmapply ------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_btlapply.R:16:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::btmapply(...)
   5.   \-batchtools::submitJobs(ids = ids, resources = resources, reg = reg)
   6.     \-batchtools:::stopf(...)
  -- Error ('test_chunk.R:90:3'): caching works ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_chunk.R:90:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_doJobCollection.R:49:3'): doJobCollection signals slave errors --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_doJobCollection.R:49:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_estimateRuntimes.R:12:3'): estimateRuntimes --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids = s.chunk(ids)) at test_estimateRuntimes.R:12:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_export.R:23:3'): export works ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_export.R:23:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:35:3'): find[Status] --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_findJobs.R:35:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:55:3'): Subsetting ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_findJobs.R:55:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:83:5'): findOnSystem --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_findJobs.R:81:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(reg = reg, ids = s.chunk(ids)) at test_findJobs.R:83:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_foreach.R:8:3'): foreach/seq -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_foreach.R:8:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_foreach.R:25:3'): foreach/multicore ----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_foreach.R:25:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getErrorMessages.R:5:3'): getErrorMessages ---------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:4) at test_getErrorMessages.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:35:3'): getJobTable.Registry ---------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg, ids = s.chunk(ids), resources = list(my.walltime = 42L)) at test_getJobTable.R:35:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:90:3'): getJobPars with repls --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = ids, reg = reg) at test_getJobTable.R:90:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:137:3'): experiment registry with vector parameters --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = tmp) at test_getJobTable.R:137:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getStatus.R:5:3'): getStatus -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:5) at test_getStatus.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_grepLogs.R:21:3'): (code run outside of `test_that()`) ---------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_grepLogs.R:1:1
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools:::submitAndWait(reg, ids[1:4]) at test_grepLogs.R:21:3
   5.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   6.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   7.   |   \-base::force(code)
   8.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   9.     \-batchtools:::stopf(...)
  -- Error ('test_hooks.R:17:3'): hooks ------------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_hooks.R:17:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_killJobs.R:7:3'): killJobs -------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(submitJobs(1, reg = reg)) at test_killJobs.R:7:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(1, reg = reg)
   5.   \-batchtools:::stopf(...)
  -- Error ('test_mergeRegistries.R:12:3'): mergeRegistries ----------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(target, data.table(job.id = 1:4, chunk = 1L)) at test_mergeRegistries.R:12:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:14:3'): pm/multicore -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_parallelMap.R:14:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:25:3'): pm/socket --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_parallelMap.R:25:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:37:3'): parallelMap works with batchtools --------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-parallelMap::parallelMap(function(x, y) x + y, x = 1:2, y = 1) at test_parallelMap.R:37:3
   2.   \-batchtools::submitJobs(...)
   3.     \-batchtools:::stopf(...)
  -- Error ('test_reduceResults.R:5:3'): (code run outside of `test_that()`) -----
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-base::suppressMessages(...) at test_reduceResults.R:1:1
   2. | \-base::withCallingHandlers(...)
   3. \-batchtools:::submitAndWait(reg, 1:3) at test_reduceResults.R:5:3
   4.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   5.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   6.   |   \-base::force(code)
   7.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   8.     \-batchtools:::stopf(...)
  -- Error ('test_resetJobs.R:9:3'): resetJobs -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:3) at test_resetJobs.R:9:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_resetJobs.R:39:3'): functions produce error after resetting jobs --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:3) at test_resetJobs.R:39:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_seed.R:30:3'): Problem and Algorithm seed ----------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_seed.R:30:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_seed.R:62:3'): Seed is correctly reported (#203) ---------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_seed.R:62:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_showLog.R:6:3'): showLog/getLog --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_showLog.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_showLog.R:31:3'): empty log files ------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_showLog.R:31:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_submitJobs.R:6:3'): submitJobs ---------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:2, resources = list(foo = "bar")) at test_submitJobs.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_submitJobs.R:36:3'): per job resources -------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 1. Output: 'sbatch: error: Invalid numeric value "" for --cpus-per-task.'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids = ids) at test_submitJobs.R:36:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_sweepRegistry.R:6:3'): sweepRegistry ---------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1, resources = list(foo = 1)) at test_sweepRegistry.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:6:5'): waitForJobs -------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:5:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids, reg = reg) at test_waitForJobs.R:6:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:20:5'): waitForJobs: detection of expired jobs ---
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:19:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids, reg = reg) at test_waitForJobs.R:20:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:31:5'): waitForJobs: filter out unsubmitted jobs --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:30:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids = 1, reg = reg) at test_waitForJobs.R:31:5
   5.   \-batchtools:::stopf(...)
  
  [ FAIL 47 | WARN 219 | SKIP 4 | PASS 1002 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building 'batchtools.Rmd' using rmarkdown

Quitting from lines  at lines 228-229 [unnamed-chunk-10] (batchtools.Rmd)
Error: processing vignette 'batchtools.Rmd' failed with diagnostics:
Fatal error occurred: 101. Command 'sbatch' produced exit code 1. Output: 'sbatch: error: Invalid numeric value "" for --cpus-per-task.'
--- failed re-building 'batchtools.Rmd'

SUMMARY: processing the following file failed:
  'batchtools.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs, 1 NOTE
See
  '/tmp/th798/16151456/R-release/73/batchtools.Rcheck/00check.log'
for details.

[1] "2025-03-27 00:52:33 MST"
[1] "2025-03-27 00:52:33 MST"
Installing package into '/tmp/th798/16151456/R-release/73/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16151456/R-release/73/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-27 00:52:51 MST"
* using log directory '/tmp/th798/16151456/R-release/73/batchtools.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'batchtools/DESCRIPTION' ... OK
* this is package 'batchtools' version '0.9.17'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'batchtools' can be installed ... OK
* used C compiler: 'gcc (Spack GCC) 12.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) JobCollection.Rd:41: Lost braces
    41 |  \item{namespaces}{code{character} with required packages to load via \code{\link[base]{requireNamespace}}.}
       |                        ^
checkRd: (-1) addAlgorithm.Rd:31: Lost braces
    31 | Algorithms are functions which get the code{data} part as well as the problem instance (the return value of the
       |                                            ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'batchtools-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: makeJob
> ### Title: Jobs and Experiments
> ### Aliases: makeJob Job Experiment
> 
> ### ** Examples
> 
> ## Don't show: 
>  batchtools:::example_push_temp(1) 
> ## End(Don't show)
> tmp = makeRegistry(file.dir = NA, make.default = FALSE)
Sourcing configuration file '~/.batchtools.conf.R' ...
Created registry in '/tmp/th798/16151456/Rtmp04Ulaf/registry610c53645761c' using cluster functions 'Slurm'
> batchMap(function(x, y) x + y, x = 1:2, more.args = list(y = 99), reg = tmp)
Adding 2 jobs ...
> submitJobs(resources = list(foo = "bar"), reg = tmp)
Submitting 2 jobs in 2 chunks using cluster functions 'Slurm' ...
Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # setting R_TESTS to empty string because of
  > # https://github.com/hadley/testthat/issues/144
  > # revert this when that issue in R is fixed.
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  > library(batchtools)
  > 
  > test_check("batchtools")
  ### [bt]: Setting seed to 23573 ...
  ### [bt]: Setting seed to 23575 ...
  ### [bt]: Setting seed to 23574 ...
  [ FAIL 47 | WARN 219 | SKIP 4 | PASS 1002 ]
  
  == Skipped tests (4) ===========================================================
  * On CRAN (3): 'test_ClusterFunctionsSSH.R:4:3', 'test_memory.R:4:3',
    'test_sweepRegistry.R:37:3'
  * manual test (1): 'test_manual.R:2:3'
  
  == Failed tests ================================================================
  -- Error ('test_ClusterFunctions.R:83:3'): Special chars in directory names ----
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_ClusterFunctions.R:83:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_ClusterFunctions.R:96:3'): Export of environment variable DEBUGME --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_ClusterFunctions.R:96:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Job.R:5:3'): Job -----------------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1, resources = list(foo = "bar")) at test_Job.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Job.R:60:3'): External directory is created --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_Job.R:60:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Problem.R:54:3'): instance caching -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_Problem.R:54:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Registry.R:132:3'): clearRegistry ------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_Registry.R:132:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_Registry.R:151:3'): read only mode -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = 1:3, reg) at test_Registry.R:151:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_addExperiments.R:15:3'): addExperiments handles parameters correctly --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_addExperiments.R:15:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchMap.R:47:3'): batchMap with unnamed more.args (#267) ------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_batchMap.R:47:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchReduce.R:7:3'): batchReduce -------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = ids, reg = reg) at test_batchReduce.R:7:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_batchReduce.R:20:3'): batchReduce w/ more.args -----------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg) at test_batchReduce.R:20:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_btlapply.R:4:3'): btlapply -------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_btlapply.R:4:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::btlapply(...)
   5.   \-batchtools::submitJobs(ids = ids, resources = resources, reg = reg)
   6.     \-batchtools:::stopf(...)
  -- Error ('test_btlapply.R:16:3'): btmapply ------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_btlapply.R:16:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::btmapply(...)
   5.   \-batchtools::submitJobs(ids = ids, resources = resources, reg = reg)
   6.     \-batchtools:::stopf(...)
  -- Error ('test_chunk.R:90:3'): caching works ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_chunk.R:90:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_doJobCollection.R:49:3'): doJobCollection signals slave errors --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_doJobCollection.R:49:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_estimateRuntimes.R:12:3'): estimateRuntimes --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids = s.chunk(ids)) at test_estimateRuntimes.R:12:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_export.R:23:3'): export works ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_export.R:23:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:35:3'): find[Status] --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_findJobs.R:35:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:55:3'): Subsetting ----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_findJobs.R:55:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_findJobs.R:83:5'): findOnSystem --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_findJobs.R:81:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(reg = reg, ids = s.chunk(ids)) at test_findJobs.R:83:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_foreach.R:8:3'): foreach/seq -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_foreach.R:8:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_foreach.R:25:3'): foreach/multicore ----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_foreach.R:25:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getErrorMessages.R:5:3'): getErrorMessages ---------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:4) at test_getErrorMessages.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:35:3'): getJobTable.Registry ---------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = reg, ids = s.chunk(ids), resources = list(my.walltime = 42L)) at test_getJobTable.R:35:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:90:3'): getJobPars with repls --------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(ids = ids, reg = reg) at test_getJobTable.R:90:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getJobTable.R:137:3'): experiment registry with vector parameters --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg = tmp) at test_getJobTable.R:137:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_getStatus.R:5:3'): getStatus -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:5) at test_getStatus.R:5:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_grepLogs.R:21:3'): (code run outside of `test_that()`) ---------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_grepLogs.R:1:1
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools:::submitAndWait(reg, ids[1:4]) at test_grepLogs.R:21:3
   5.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   6.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   7.   |   \-base::force(code)
   8.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   9.     \-batchtools:::stopf(...)
  -- Error ('test_hooks.R:17:3'): hooks ------------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1) at test_hooks.R:17:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_killJobs.R:7:3'): killJobs -------------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(submitJobs(1, reg = reg)) at test_killJobs.R:7:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(1, reg = reg)
   5.   \-batchtools:::stopf(...)
  -- Error ('test_mergeRegistries.R:12:3'): mergeRegistries ----------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(target, data.table(job.id = 1:4, chunk = 1L)) at test_mergeRegistries.R:12:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:14:3'): pm/multicore -----------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_parallelMap.R:14:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:25:3'): pm/socket --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(...) at test_parallelMap.R:25:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_parallelMap.R:37:3'): parallelMap works with batchtools --------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-parallelMap::parallelMap(function(x, y) x + y, x = 1:2, y = 1) at test_parallelMap.R:37:3
   2.   \-batchtools::submitJobs(...)
   3.     \-batchtools:::stopf(...)
  -- Error ('test_reduceResults.R:5:3'): (code run outside of `test_that()`) -----
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-base::suppressMessages(...) at test_reduceResults.R:1:1
   2. | \-base::withCallingHandlers(...)
   3. \-batchtools:::submitAndWait(reg, 1:3) at test_reduceResults.R:5:3
   4.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   5.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   6.   |   \-base::force(code)
   7.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   8.     \-batchtools:::stopf(...)
  -- Error ('test_resetJobs.R:9:3'): resetJobs -----------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:3) at test_resetJobs.R:9:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_resetJobs.R:39:3'): functions produce error after resetting jobs --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:3) at test_resetJobs.R:39:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_seed.R:30:3'): Problem and Algorithm seed ----------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids) at test_seed.R:30:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_seed.R:62:3'): Seed is correctly reported (#203) ---------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_seed.R:62:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_showLog.R:6:3'): showLog/getLog --------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_showLog.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_showLog.R:31:3'): empty log files ------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg) at test_showLog.R:31:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_submitJobs.R:6:3'): submitJobs ---------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1:2, resources = list(foo = "bar")) at test_submitJobs.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_submitJobs.R:36:3'): per job resources -------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 1. Output: 'sbatch: error: Invalid numeric value "" for --cpus-per-task.'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, ids = ids) at test_submitJobs.R:36:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_sweepRegistry.R:6:3'): sweepRegistry ---------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. \-batchtools:::submitAndWait(reg, 1, resources = list(foo = 1)) at test_sweepRegistry.R:6:3
   2.   +-batchtools:::silent(...) at tests/testthat/helper.R:53:3
   3.   | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   4.   |   \-base::force(code)
   5.   \-batchtools::submitJobs(ids = ids, ..., reg = reg) at tests/testthat/helper.R:54:5
   6.     \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:6:5'): waitForJobs -------------------------------
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:5:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids, reg = reg) at test_waitForJobs.R:6:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:20:5'): waitForJobs: detection of expired jobs ---
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:19:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids, reg = reg) at test_waitForJobs.R:20:5
   5.   \-batchtools:::stopf(...)
  -- Error ('test_waitForJobs.R:31:5'): waitForJobs: filter out unsubmitted jobs --
  Error: Fatal error occurred: 101. Command 'sbatch' produced exit code 255. Output: 'sbatch: error: Invalid --time specification'
  Backtrace:
      x
   1. +-batchtools:::silent(...) at test_waitForJobs.R:30:3
   2. | \-withr::with_options(...) at tests/testthat/helper.R:41:3
   3. |   \-base::force(code)
   4. \-batchtools::submitJobs(ids = 1, reg = reg) at test_waitForJobs.R:31:5
   5.   \-batchtools:::stopf(...)
  
  [ FAIL 47 | WARN 219 | SKIP 4 | PASS 1002 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building 'batchtools.Rmd' using rmarkdown

Quitting from lines  at lines 228-229 [unnamed-chunk-10] (batchtools.Rmd)
Error: processing vignette 'batchtools.Rmd' failed with diagnostics:
Fatal error occurred: 101. Command 'sbatch' produced exit code 1. Output: 'sbatch: error: Invalid numeric value "" for --cpus-per-task.'
--- failed re-building 'batchtools.Rmd'

SUMMARY: processing the following file failed:
  'batchtools.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs, 1 NOTE
See
  '/tmp/th798/16151456/R-release/73/batchtools.Rcheck/00check.log'
for details.

[1] "2025-03-27 00:55:16 MST"
> system(paste(c("diff -u", Rcheck.list), collapse=" "))
--- R_version_4.4.3_2025-02-28/release_1.17.0.Rcheck/00check.log	2025-03-27 00:52:33.983603771 -0700
+++ R_version_4.4.3_2025-02-28/master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.Rcheck/00check.log	2025-03-27 00:55:16.304080698 -0700
@@ -79,7 +79,7 @@
 > ## End(Don't show)
 > tmp = makeRegistry(file.dir = NA, make.default = FALSE)
 Sourcing configuration file '~/.batchtools.conf.R' ...
-Created registry in '/tmp/th798/16151456/Rtmp8fWOy2/registry5910c7d632867' using cluster functions 'Slurm'
+Created registry in '/tmp/th798/16151456/Rtmp04Ulaf/registry610c53645761c' using cluster functions 'Slurm'
 > batchMap(function(x, y) x + y, x = 1:2, more.args = list(y = 99), reg = tmp)
 Adding 2 jobs ...
 > submitJobs(resources = list(foo = "bar"), reg = tmp)
> library(data.table, lib.loc=R.home("library"))
> (sig.diff.dt <- myDiff(Rvers))
Key: <checking>
Empty data.table (0 rows and 3 cols): checking,master,release
> 
> ## If there are significant differences, use git bisect to find when
> ## they started.
> if(nrow(sig.diff.dt)){
+   dt.git <- file.path(task.dir, "data.table.git")
+   system(paste("cd ~/R/data.table && git fetch --tags"))
+   system(paste("git clone ~/R/data.table", dt.git))
+   release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]])
+   rev.parse.cmd <- paste(
+     "cd", dt.git, "&& git rev-parse master")
+   master.sha <- system(rev.parse.cmd, intern=TRUE)
+   merge.base.cmd <- paste(
+     "cd", dt.git, "&& git merge-base master", release.tag)
+   merge.base.sha <- system(merge.base.cmd, intern=TRUE)
+   old.sha <- merge.base.sha
+   run_R <- file.path(proj.dir, "install_dt_then_check_dep.R")
+   sig.diff.dt[, first.bad.commit := NA_character_]
+   sig.diff.dt[, comments := NA_character_]
+   for(diff.i in 1:nrow(sig.diff.dt)){
+     sig.diff.row <- sig.diff.dt[diff.i]
+     bisect.cmd <- paste(
+       "cd", dt.git, "&&",
+       "git bisect start &&",
+       "git bisect old", old.sha, "&&",
+       "git bisect new master &&",
+       "git bisect run",
+       R.home('bin/Rscript'),
+       run_R,
+       shQuote(sig.diff.row$checking),
+       sig.diff.row$release,
+       rev.dep.release.tar.gz,
+       release.tag)
+     print(bisect.cmd)
+     bisect.out <- system(bisect.cmd, intern=TRUE)
+     cat(bisect.out,sep="\n")
+     if(is.null(attr(bisect.out,"status"))){
+       first.bad.sha <- nc::capture_all_str(
+         bisect.out,
+         sha="[0-9a-f]+",
+         " is the first new commit")$sha
+       parent.cmd <- paste(
+         "cd ~/R/data.table && git log --pretty=%P -n 1",
+         first.bad.sha)
+       parent.sha <- system(parent.cmd, intern=TRUE)
+       sig.diff.dt[diff.i, first.bad.commit := first.bad.sha]
+       parent.msg <- paste0("parent=", parent.sha)
+       this.comment <- if(parent.sha==old.sha){
+         paste(parent.msg, "same as git bisect old")
+       }else if(first.bad.sha==master.sha){
+         paste("same as git bisect new=master,", parent.msg)
+       }else{
+         parent.msg
+       }
+       sig.diff.dt[diff.i, comments := this.comment]
+     }
+   }
+   ## add CRAN column.
+   sig.diff.dt[, CRAN := {
+     flavor <- get_flavor(Rvers)
+     details <- data.table(flavor=unique(flavor))[, {
+       base <- "https://www.r-project.org/nosvn/R.check/"
+       u <- paste0(base, flavor, "/", rev.dep, "-00check.txt")
+       check.txt <- tempfile()
+       tryCatch({
+         download.file(u, check.txt, quiet=TRUE)
+       }, error=function(e){
+         NULL
+       })
+       check.lines <- if(file.exists(check.txt)){
+         readLines(check.txt,encoding="UTF-8")
+       }else{
+         ""
+       }
+       repl.lines <- gsub("[\u2018\u2019]", "'", check.lines)
+       ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C.
+       myStatus(line.vec=repl.lines)
+     }, by=flavor]
+     select.dt <- data.table(flavor, checking)
+     details[select.dt, msg, on=.(flavor, checking)]
+   }]
+   dir.create(file.path(job.dir, Rvers))
+   diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv")
+   data.table::fwrite(sig.diff.dt, diffs.csv)
+   print(sig.diff.dt)
+ }
>