Note: the module "R" cannot be unloaded because it was not loaded. WARNING: ignoring environment value of R_HOME R Under development (unstable) (2025-03-27 r88065) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-28/deps.csv", task.str = "953", release = "/scratch/th798/data.table-revdeps/2025-03-28/data.table_release_1.17.0.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-03-28/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/16170482/R-devel/953" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/16170482/R-devel/953/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "One4All" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/16170482/R-devel/953/library" [2] "/projects/genomic-ml/R/R-devel/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-03-28 01:05:54 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/16170482/R-devel/953/library' (as 'lib' is unspecified) also installing the dependencies 'validate', 'ckanr', 'mongolite' trying URL 'http://cloud.r-project.org/src/contrib/validate_1.1.5.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/ckanr_0.7.0.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/mongolite_3.1.2.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/One4All_0.5.tar.gz' * installing *source* package 'validate' ... ** this is package 'validate' version '1.1.5' ** package 'validate' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c R_fdep.c -o R_fdep.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c R_register_native.c -o R_register_native.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c sfh.c -o sfh.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o validate.so R_fdep.o R_register_native.o sfh.o installing to /tmp/th798/16170482/R-devel/953/library/00LOCK-validate/00new/validate/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'reset' in package 'validate' ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (validate) * installing *source* package 'ckanr' ... ** this is package 'ckanr' version '0.7.0' ** package 'ckanr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ckanr) * installing *source* package 'mongolite' ... ** this is package 'mongolite' version '3.1.2' ** package 'mongolite' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/home/th798/.conda/envs/emacs1/include Using PKG_LIBS=-lsasl2 -L/home/th798/.conda/envs/emacs1/lib -lssl -lcrypto -lresolv SASL has sasl_client_done. Compiling with extra alignment. ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson.c -o bson.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c client.c -o client.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c collection.c -o collection.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cursor.c -o cursor.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gridfs.c -o gridfs.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c hex.c -o hex.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongo_log.c -o mongo_log.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reader.c -o reader.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bcon.c -o bson/bcon.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-clock.c -o bson/bson-clock.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-context.c -o bson/bson-context.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-md5.c -o common/common-md5.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-error.c -o bson/bson-error.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-iso8601.c -o bson/bson-iso8601.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-iter.c -o bson/bson-iter.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-json.c -o bson/bson-json.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-keys.c -o bson/bson-keys.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-md5.c -o bson/bson-md5.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-memory.c -o bson/bson-memory.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-oid.c -o bson/bson-oid.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-reader.c -o bson/bson-reader.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-string.c -o bson/bson-string.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-timegm.c -o bson/bson-timegm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-utf8.c -o bson/bson-utf8.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-value.c -o bson/bson-value.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson.c -o bson/bson.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-decimal128.c -o bson/bson-decimal128.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c jsonsl/jsonsl.c -o jsonsl/jsonsl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-array.c -o mongoc/mongoc-array.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-b64.c -o common/common-b64.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-buffer.c -o mongoc/mongoc-buffer.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-bulk-operation.c -o mongoc/mongoc-bulk-operation.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-client-pool.c -o mongoc/mongoc-client-pool.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-client.c -o mongoc/mongoc-client.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cluster.c -o mongoc/mongoc-cluster.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-collection.c -o mongoc/mongoc-collection.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-counters.c -o mongoc/mongoc-counters.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-array.c -o mongoc/mongoc-cursor-array.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor.c -o mongoc/mongoc-cursor.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-database.c -o mongoc/mongoc-database.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-gridfs-file-list.c -o mongoc/mongoc-gridfs-file-list.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-gridfs-file-page.c -o mongoc/mongoc-gridfs-file-page.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-gridfs-file.c -o mongoc/mongoc-gridfs-file.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-gridfs.c -o mongoc/mongoc-gridfs.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-index.c -o mongoc/mongoc-index.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-gridfs.c -o mongoc/mongoc-stream-gridfs.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-init.c -o mongoc/mongoc-init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-list.c -o mongoc/mongoc-list.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-log.c -o mongoc/mongoc-log.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-rand-openssl.c -o mongoc/mongoc-rand-openssl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-read-prefs.c -o mongoc/mongoc-read-prefs.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-rpc.c -o mongoc/mongoc-rpc.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-sasl.c -o mongoc/mongoc-sasl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-scram.c -o mongoc/mongoc-scram.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-socket.c -o mongoc/mongoc-socket.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-ssl.c -o mongoc/mongoc-ssl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-buffered.c -o mongoc/mongoc-stream-buffered.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-socket.c -o mongoc/mongoc-stream-socket.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-tls.c -o mongoc/mongoc-stream-tls.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream.c -o mongoc/mongoc-stream.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-uri.c -o mongoc/mongoc-uri.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-util.c -o mongoc/mongoc-util.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-write-command.c -o mongoc/mongoc-write-command.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-write-concern.c -o mongoc/mongoc-write-concern.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-topology-description-apm.c -o mongoc/mongoc-topology-description-apm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-async.c -o mongoc/mongoc-async.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-async-cmd.c -o mongoc/mongoc-async-cmd.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-host-list.c -o mongoc/mongoc-host-list.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-set.c -o mongoc/mongoc-set.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-server-description.c -o mongoc/mongoc-server-description.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-topology-description.c -o mongoc/mongoc-topology-description.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-topology.c -o mongoc/mongoc-topology.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-topology-scanner.c -o mongoc/mongoc-topology-scanner.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-version-functions.c -o mongoc/mongoc-version-functions.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-memcmp.c -o mongoc/mongoc-memcmp.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-server-stream.c -o mongoc/mongoc-server-stream.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-find-and-modify.c -o mongoc/mongoc-find-and-modify.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-read-concern.c -o mongoc/mongoc-read-concern.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-openssl.c -o mongoc/mongoc-openssl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-apm.c -o mongoc/mongoc-apm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-crypto.c -o mongoc/mongoc-crypto.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-crypto-common-crypto.c -o mongoc/mongoc-crypto-common-crypto.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-crypto-openssl.c -o mongoc/mongoc-crypto-openssl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-handshake.c -o mongoc/mongoc-handshake.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-tls-openssl.c -o mongoc/mongoc-stream-tls-openssl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-tls-openssl-bio.c -o mongoc/mongoc-stream-tls-openssl-bio.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cluster-sasl.c -o mongoc/mongoc-cluster-sasl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cmd.c -o mongoc/mongoc-cmd.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-change-stream.c -o mongoc/mongoc-change-stream.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-client-session.c -o mongoc/mongoc-client-session.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cluster-cyrus.c -o mongoc/mongoc-cluster-cyrus.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-compression.c -o mongoc/mongoc-compression.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cyrus.c -o mongoc/mongoc-cyrus.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-linux-distro-scanner.c -o mongoc/mongoc-linux-distro-scanner.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-file.c -o mongoc/mongoc-stream-file.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mcd-rpc.c -o mongoc/mcd-rpc.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-deprioritized-servers.c -o mongoc/mongoc-deprioritized-servers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-opts.c -o mongoc/mongoc-opts.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-opts-helpers.c -o mongoc/mongoc-opts-helpers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-cmd.c -o mongoc/mongoc-cursor-cmd.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-cmd-deprecated.c -o mongoc/mongoc-cursor-cmd-deprecated.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-find.c -o mongoc/mongoc-cursor-find.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-find-cmd.c -o mongoc/mongoc-cursor-find-cmd.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-find-opquery.c -o mongoc/mongoc-cursor-find-opquery.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-legacy.c -o mongoc/mongoc-cursor-legacy.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-error.c -o mongoc/mongoc-error.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-aggregate.c -o mongoc/mongoc-aggregate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-client-side-encryption.c -o mongoc/mongoc-client-side-encryption.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-change-stream.c -o mongoc/mongoc-cursor-change-stream.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cluster-aws.c -o mongoc/mongoc-cluster-aws.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-generation-map.c -o mongoc/mongoc-generation-map.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-timeout.c -o mongoc/mongoc-timeout.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-server-monitor.c -o mongoc/mongoc-server-monitor.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-topology-background-monitoring.c -o mongoc/mongoc-topology-background-monitoring.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-thread.c -o common/common-thread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-optional.c -o mongoc/mongoc-optional.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-server-api.c -o mongoc/mongoc-server-api.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-http.c -o mongoc/mongoc-http.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-ocsp-cache.c -o mongoc/mongoc-ocsp-cache.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-shared.c -o mongoc/mongoc-shared.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-ts-pool.c -o mongoc/mongoc-ts-pool.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utf8proc/utf8proc.c -o utf8proc/utf8proc.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-structured-log.c -o mongoc/mongoc-structured-log.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-log-and-monitor-private.c -o mongoc/mongoc-log-and-monitor-private.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-oid.c -o common/common-oid.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-json.c -o common/common-json.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-string.c -o common/common-string.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/hexlify.c -o kms/hexlify.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_kv_list.c -o kms/kms_kv_list.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_request.c -o kms/kms_request.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_response.c -o kms/kms_response.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_b64.c -o kms/kms_b64.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_crypto_libcrypto.c -o kms/kms_crypto_libcrypto.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_decrypt_request.c -o kms/kms_decrypt_request.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_message.c -o kms/kms_message.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_request_opt.c -o kms/kms_request_opt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_response_parser.c -o kms/kms_response_parser.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_caller_identity_request.c -o kms/kms_caller_identity_request.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_encrypt_request.c -o kms/kms_encrypt_request.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_request_str.c -o kms/kms_request_str.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/sort.c -o kms/sort.o ar rcs mongoc/libstatmongoc.a bson/bcon.o bson/bson-clock.o bson/bson-context.o common/common-md5.o bson/bson-error.o bson/bson-iso8601.o bson/bson-iter.o bson/bson-json.o bson/bson-keys.o bson/bson-md5.o bson/bson-memory.o bson/bson-oid.o bson/bson-reader.o bson/bson-string.o bson/bson-timegm.o bson/bson-utf8.o bson/bson-value.o bson/bson.o bson/bson-decimal128.o jsonsl/jsonsl.o mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o mongoc/mongoc-bulk-operation.o mongoc/mongoc-client-pool.o mongoc/mongoc-client.o mongoc/mongoc-cluster.o mongoc/mongoc-collection.o mongoc/mongoc-counters.o mongoc/mongoc-cursor-array.o mongoc/mongoc-cursor.o mongoc/mongoc-database.o mongoc/mongoc-gridfs-file-list.o mongoc/mongoc-gridfs-file-page.o mongoc/mongoc-gridfs-file.o mongoc/mongoc-gridfs.o mongoc/mongoc-index.o mongoc/mongoc-stream-gridfs.o mongoc/mongoc-init.o mongoc/mongoc-list.o mongoc/mongoc-log.o mongoc/mongoc-rand-openssl.o mongoc/mongoc-read-prefs.o mongoc/mongoc-rpc.o mongoc/mongoc-sasl.o mongoc/mongoc-scram.o mongoc/mongoc-socket.o mongoc/mongoc-ssl.o mongoc/mongoc-stream-buffered.o mongoc/mongoc-stream-socket.o mongoc/mongoc-stream-tls.o mongoc/mongoc-stream.o mongoc/mongoc-uri.o mongoc/mongoc-util.o mongoc/mongoc-write-command.o mongoc/mongoc-write-concern.o mongoc/mongoc-topology-description-apm.o mongoc/mongoc-async.o mongoc/mongoc-async-cmd.o mongoc/mongoc-host-list.o mongoc/mongoc-set.o mongoc/mongoc-server-description.o mongoc/mongoc-topology-description.o mongoc/mongoc-topology.o mongoc/mongoc-topology-scanner.o mongoc/mongoc-version-functions.o mongoc/mongoc-memcmp.o mongoc/mongoc-server-stream.o mongoc/mongoc-find-and-modify.o mongoc/mongoc-read-concern.o mongoc/mongoc-openssl.o mongoc/mongoc-apm.o mongoc/mongoc-crypto.o mongoc/mongoc-crypto-common-crypto.o mongoc/mongoc-crypto-openssl.o mongoc/mongoc-handshake.o mongoc/mongoc-stream-tls-openssl.o mongoc/mongoc-stream-tls-openssl-bio.o mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o mongoc/mongoc-change-stream.o mongoc/mongoc-client-session.o mongoc/mongoc-cluster-cyrus.o mongoc/mongoc-compression.o mongoc/mongoc-cyrus.o mongoc/mongoc-linux-distro-scanner.o mongoc/mongoc-stream-file.o mongoc/mcd-rpc.o mongoc/mongoc-deprioritized-servers.o mongoc/mongoc-opts.o mongoc/mongoc-opts-helpers.o mongoc/mongoc-cursor-cmd.o mongoc/mongoc-cursor-cmd-deprecated.o mongoc/mongoc-cursor-find.o mongoc/mongoc-cursor-find-cmd.o mongoc/mongoc-cursor-find-opquery.o mongoc/mongoc-cursor-legacy.o mongoc/mongoc-error.o mongoc/mongoc-aggregate.o mongoc/mongoc-client-side-encryption.o mongoc/mongoc-cursor-change-stream.o mongoc/mongoc-change-stream.o mongoc/mongoc-cluster-aws.o mongoc/mongoc-generation-map.o mongoc/mongoc-timeout.o mongoc/mongoc-server-monitor.o mongoc/mongoc-topology-background-monitoring.o common/common-thread.o mongoc/mongoc-optional.o mongoc/mongoc-server-api.o mongoc/mongoc-http.o mongoc/mongoc-ocsp-cache.o mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o utf8proc/utf8proc.o mongoc/mongoc-structured-log.o mongoc/mongoc-log-and-monitor-private.o common/common-oid.o common/common-json.o common/common-string.o kms/hexlify.o kms/kms_kv_list.o kms/kms_request.o kms/kms_response.o kms/kms_b64.o kms/kms_crypto_libcrypto.o kms/kms_decrypt_request.o kms/kms_message.o kms/kms_request_opt.o kms/kms_response_parser.o kms/kms_caller_identity_request.o kms/kms_encrypt_request.o kms/kms_request_str.o kms/sort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o mongolite.so bson.o client.o collection.o cursor.o gridfs.o hex.o mongo_log.o reader.o utils.o -Lmongoc -lstatmongoc -lsasl2 -L/home/th798/.conda/envs/emacs1/lib -lssl -lcrypto -lresolv -lz rm -f mongoc/libstatmongoc.a bson/bcon.o bson/bson-clock.o bson/bson-context.o common/common-md5.o bson/bson-error.o bson/bson-iso8601.o bson/bson-iter.o bson/bson-json.o bson/bson-keys.o bson/bson-md5.o bson/bson-memory.o bson/bson-oid.o bson/bson-reader.o bson/bson-string.o bson/bson-timegm.o bson/bson-utf8.o bson/bson-value.o bson/bson.o bson/bson-decimal128.o jsonsl/jsonsl.o mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o mongoc/mongoc-bulk-operation.o mongoc/mongoc-client-pool.o mongoc/mongoc-client.o mongoc/mongoc-cluster.o mongoc/mongoc-collection.o mongoc/mongoc-counters.o mongoc/mongoc-cursor-array.o mongoc/mongoc-cursor.o mongoc/mongoc-database.o mongoc/mongoc-gridfs-file-list.o mongoc/mongoc-gridfs-file-page.o mongoc/mongoc-gridfs-file.o mongoc/mongoc-gridfs.o mongoc/mongoc-index.o mongoc/mongoc-stream-gridfs.o mongoc/mongoc-init.o mongoc/mongoc-list.o mongoc/mongoc-log.o mongoc/mongoc-rand-openssl.o mongoc/mongoc-read-prefs.o mongoc/mongoc-rpc.o mongoc/mongoc-sasl.o mongoc/mongoc-scram.o mongoc/mongoc-socket.o mongoc/mongoc-ssl.o mongoc/mongoc-stream-buffered.o mongoc/mongoc-stream-socket.o mongoc/mongoc-stream-tls.o mongoc/mongoc-stream.o mongoc/mongoc-uri.o mongoc/mongoc-util.o mongoc/mongoc-write-command.o mongoc/mongoc-write-concern.o mongoc/mongoc-topology-description-apm.o mongoc/mongoc-async.o mongoc/mongoc-async-cmd.o mongoc/mongoc-host-list.o mongoc/mongoc-set.o mongoc/mongoc-server-description.o mongoc/mongoc-topology-description.o mongoc/mongoc-topology.o mongoc/mongoc-topology-scanner.o mongoc/mongoc-version-functions.o mongoc/mongoc-memcmp.o mongoc/mongoc-server-stream.o mongoc/mongoc-find-and-modify.o mongoc/mongoc-read-concern.o mongoc/mongoc-openssl.o mongoc/mongoc-apm.o mongoc/mongoc-crypto.o mongoc/mongoc-crypto-common-crypto.o mongoc/mongoc-crypto-openssl.o mongoc/mongoc-handshake.o mongoc/mongoc-stream-tls-openssl.o mongoc/mongoc-stream-tls-openssl-bio.o mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o mongoc/mongoc-change-stream.o mongoc/mongoc-client-session.o mongoc/mongoc-cluster-cyrus.o mongoc/mongoc-compression.o mongoc/mongoc-cyrus.o mongoc/mongoc-linux-distro-scanner.o mongoc/mongoc-stream-file.o mongoc/mcd-rpc.o mongoc/mongoc-deprioritized-servers.o mongoc/mongoc-opts.o mongoc/mongoc-opts-helpers.o mongoc/mongoc-cursor-cmd.o mongoc/mongoc-cursor-cmd-deprecated.o mongoc/mongoc-cursor-find.o mongoc/mongoc-cursor-find-cmd.o mongoc/mongoc-cursor-find-opquery.o mongoc/mongoc-cursor-legacy.o mongoc/mongoc-error.o mongoc/mongoc-aggregate.o mongoc/mongoc-client-side-encryption.o mongoc/mongoc-cursor-change-stream.o mongoc/mongoc-change-stream.o mongoc/mongoc-cluster-aws.o mongoc/mongoc-generation-map.o mongoc/mongoc-timeout.o mongoc/mongoc-server-monitor.o mongoc/mongoc-topology-background-monitoring.o common/common-thread.o mongoc/mongoc-optional.o mongoc/mongoc-server-api.o mongoc/mongoc-http.o mongoc/mongoc-ocsp-cache.o mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o utf8proc/utf8proc.o mongoc/mongoc-structured-log.o mongoc/mongoc-log-and-monitor-private.o common/common-oid.o common/common-json.o common/common-string.o kms/hexlify.o kms/kms_kv_list.o kms/kms_request.o kms/kms_response.o kms/kms_b64.o kms/kms_crypto_libcrypto.o kms/kms_decrypt_request.o kms/kms_message.o kms/kms_request_opt.o kms/kms_response_parser.o kms/kms_caller_identity_request.o kms/kms_encrypt_request.o kms/kms_request_str.o kms/sort.o installing to /tmp/th798/16170482/R-devel/953/library/00LOCK-mongolite/00new/mongolite/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mongolite) * installing *source* package 'One4All' ... ** this is package 'One4All' version '0.5' ** package 'One4All' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (One4All) The downloaded source packages are in '/tmp/th798/16170482/RtmpSLZdVP/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 44.972 5.466 264.349 > print(Sys.time()) [1] "2025-03-28 01:10:18 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-03-28 01:10:18 MST" Installing package into '/tmp/th798/16170482/R-devel/953/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.0' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16170482/R-devel/953/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-28 01:10:58 MST" * using log directory '/tmp/th798/16170482/R-devel/953/One4All.Rcheck' * using R Under development (unstable) (2025-03-27 r88065) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'One4All/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'One4All' version '0.5' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'One4All' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: 'global.R' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See '/tmp/th798/16170482/R-devel/953/One4All.Rcheck/00check.log' for details. [1] "2025-03-28 01:23:28 MST" [1] "2025-03-28 01:23:28 MST" Installing package into '/tmp/th798/16170482/R-devel/953/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.99' ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16170482/R-devel/953/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-28 01:24:04 MST" * using log directory '/tmp/th798/16170482/R-devel/953/One4All.Rcheck' * using R Under development (unstable) (2025-03-27 r88065) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'One4All/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'One4All' version '0.5' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'One4All' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: 'global.R' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See '/tmp/th798/16170482/R-devel/953/One4All.Rcheck/00check.log' for details. [1] "2025-03-28 01:34:46 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: Empty data.table (0 rows and 3 cols): checking,master,release > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } > WARNING: ignoring environment value of R_HOME R version 4.4.3 (2025-02-28) -- "Trophy Case" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-28/deps.csv", task.str = "953", release = "/scratch/th798/data.table-revdeps/2025-03-28/data.table_release_1.17.0.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-03-28/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/16170482/R-release/953" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/16170482/R-release/953/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "One4All" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/16170482/R-release/953/library" [2] "/projects/genomic-ml/R/R-release/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-03-28 01:35:01 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/16170482/R-release/953/library' (as 'lib' is unspecified) also installing the dependencies 'validate', 'ckanr', 'mongolite', 'listviewer' trying URL 'http://cloud.r-project.org/src/contrib/validate_1.1.5.tar.gz' Content type 'application/x-gzip' length 2787942 bytes (2.7 MB) ================================================== downloaded 2.7 MB trying URL 'http://cloud.r-project.org/src/contrib/ckanr_0.7.0.tar.gz' Content type 'application/x-gzip' length 81520 bytes (79 KB) ================================================== downloaded 79 KB trying URL 'http://cloud.r-project.org/src/contrib/mongolite_3.1.2.tar.gz' Content type 'application/x-gzip' length 1014601 bytes (990 KB) ================================================== downloaded 990 KB trying URL 'http://cloud.r-project.org/src/contrib/listviewer_4.0.0.tar.gz' Content type 'application/x-gzip' length 477039 bytes (465 KB) ================================================== downloaded 465 KB trying URL 'http://cloud.r-project.org/src/contrib/One4All_0.5.tar.gz' Content type 'application/x-gzip' length 4376923 bytes (4.2 MB) ================================================== downloaded 4.2 MB * installing *source* package 'validate' ... ** package 'validate' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c R_fdep.c -o R_fdep.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c R_register_native.c -o R_register_native.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c sfh.c -o sfh.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o validate.so R_fdep.o R_register_native.o sfh.o installing to /tmp/th798/16170482/R-release/953/library/00LOCK-validate/00new/validate/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'reset' in package 'validate' ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (validate) * installing *source* package 'ckanr' ... ** package 'ckanr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ckanr) * installing *source* package 'mongolite' ... ** package 'mongolite' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/home/th798/.conda/envs/emacs1/include Using PKG_LIBS=-lsasl2 -L/home/th798/.conda/envs/emacs1/lib -lssl -lcrypto -lresolv SASL has sasl_client_done. Compiling with extra alignment. ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson.c -o bson.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c client.c -o client.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c collection.c -o collection.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cursor.c -o cursor.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gridfs.c -o gridfs.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c hex.c -o hex.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongo_log.c -o mongo_log.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reader.c -o reader.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bcon.c -o bson/bcon.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-clock.c -o bson/bson-clock.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-context.c -o bson/bson-context.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-md5.c -o common/common-md5.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-error.c -o bson/bson-error.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-iso8601.c -o bson/bson-iso8601.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-iter.c -o bson/bson-iter.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-json.c -o bson/bson-json.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-keys.c -o bson/bson-keys.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-md5.c -o bson/bson-md5.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-memory.c -o bson/bson-memory.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-oid.c -o bson/bson-oid.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-reader.c -o bson/bson-reader.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-string.c -o bson/bson-string.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-timegm.c -o bson/bson-timegm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-utf8.c -o bson/bson-utf8.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-value.c -o bson/bson-value.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson.c -o bson/bson.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bson/bson-decimal128.c -o bson/bson-decimal128.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c jsonsl/jsonsl.c -o jsonsl/jsonsl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-array.c -o mongoc/mongoc-array.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-b64.c -o common/common-b64.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-buffer.c -o mongoc/mongoc-buffer.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-bulk-operation.c -o mongoc/mongoc-bulk-operation.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-client-pool.c -o mongoc/mongoc-client-pool.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-client.c -o mongoc/mongoc-client.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cluster.c -o mongoc/mongoc-cluster.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-collection.c -o mongoc/mongoc-collection.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-counters.c -o mongoc/mongoc-counters.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-array.c -o mongoc/mongoc-cursor-array.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor.c -o mongoc/mongoc-cursor.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-database.c -o mongoc/mongoc-database.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-gridfs-file-list.c -o mongoc/mongoc-gridfs-file-list.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-gridfs-file-page.c -o mongoc/mongoc-gridfs-file-page.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-gridfs-file.c -o mongoc/mongoc-gridfs-file.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-gridfs.c -o mongoc/mongoc-gridfs.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-index.c -o mongoc/mongoc-index.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-gridfs.c -o mongoc/mongoc-stream-gridfs.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-init.c -o mongoc/mongoc-init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-list.c -o mongoc/mongoc-list.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-log.c -o mongoc/mongoc-log.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-rand-openssl.c -o mongoc/mongoc-rand-openssl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-read-prefs.c -o mongoc/mongoc-read-prefs.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-rpc.c -o mongoc/mongoc-rpc.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-sasl.c -o mongoc/mongoc-sasl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-scram.c -o mongoc/mongoc-scram.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-socket.c -o mongoc/mongoc-socket.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-ssl.c -o mongoc/mongoc-ssl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-buffered.c -o mongoc/mongoc-stream-buffered.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-socket.c -o mongoc/mongoc-stream-socket.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-tls.c -o mongoc/mongoc-stream-tls.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream.c -o mongoc/mongoc-stream.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-uri.c -o mongoc/mongoc-uri.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-util.c -o mongoc/mongoc-util.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-write-command.c -o mongoc/mongoc-write-command.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-write-concern.c -o mongoc/mongoc-write-concern.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-topology-description-apm.c -o mongoc/mongoc-topology-description-apm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-async.c -o mongoc/mongoc-async.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-async-cmd.c -o mongoc/mongoc-async-cmd.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-host-list.c -o mongoc/mongoc-host-list.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-set.c -o mongoc/mongoc-set.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-server-description.c -o mongoc/mongoc-server-description.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-topology-description.c -o mongoc/mongoc-topology-description.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-topology.c -o mongoc/mongoc-topology.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-topology-scanner.c -o mongoc/mongoc-topology-scanner.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-version-functions.c -o mongoc/mongoc-version-functions.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-memcmp.c -o mongoc/mongoc-memcmp.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-server-stream.c -o mongoc/mongoc-server-stream.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-find-and-modify.c -o mongoc/mongoc-find-and-modify.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-read-concern.c -o mongoc/mongoc-read-concern.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-openssl.c -o mongoc/mongoc-openssl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-apm.c -o mongoc/mongoc-apm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-crypto.c -o mongoc/mongoc-crypto.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-crypto-common-crypto.c -o mongoc/mongoc-crypto-common-crypto.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-crypto-openssl.c -o mongoc/mongoc-crypto-openssl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-handshake.c -o mongoc/mongoc-handshake.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-tls-openssl.c -o mongoc/mongoc-stream-tls-openssl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-tls-openssl-bio.c -o mongoc/mongoc-stream-tls-openssl-bio.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cluster-sasl.c -o mongoc/mongoc-cluster-sasl.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cmd.c -o mongoc/mongoc-cmd.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-change-stream.c -o mongoc/mongoc-change-stream.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-client-session.c -o mongoc/mongoc-client-session.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cluster-cyrus.c -o mongoc/mongoc-cluster-cyrus.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-compression.c -o mongoc/mongoc-compression.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cyrus.c -o mongoc/mongoc-cyrus.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-linux-distro-scanner.c -o mongoc/mongoc-linux-distro-scanner.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-stream-file.c -o mongoc/mongoc-stream-file.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mcd-rpc.c -o mongoc/mcd-rpc.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-deprioritized-servers.c -o mongoc/mongoc-deprioritized-servers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-opts.c -o mongoc/mongoc-opts.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-opts-helpers.c -o mongoc/mongoc-opts-helpers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-cmd.c -o mongoc/mongoc-cursor-cmd.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-cmd-deprecated.c -o mongoc/mongoc-cursor-cmd-deprecated.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-find.c -o mongoc/mongoc-cursor-find.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-find-cmd.c -o mongoc/mongoc-cursor-find-cmd.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-find-opquery.c -o mongoc/mongoc-cursor-find-opquery.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-legacy.c -o mongoc/mongoc-cursor-legacy.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-error.c -o mongoc/mongoc-error.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-aggregate.c -o mongoc/mongoc-aggregate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-client-side-encryption.c -o mongoc/mongoc-client-side-encryption.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cursor-change-stream.c -o mongoc/mongoc-cursor-change-stream.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-cluster-aws.c -o mongoc/mongoc-cluster-aws.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-generation-map.c -o mongoc/mongoc-generation-map.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-timeout.c -o mongoc/mongoc-timeout.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-server-monitor.c -o mongoc/mongoc-server-monitor.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-topology-background-monitoring.c -o mongoc/mongoc-topology-background-monitoring.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-thread.c -o common/common-thread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-optional.c -o mongoc/mongoc-optional.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-server-api.c -o mongoc/mongoc-server-api.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-http.c -o mongoc/mongoc-http.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-ocsp-cache.c -o mongoc/mongoc-ocsp-cache.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-shared.c -o mongoc/mongoc-shared.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-ts-pool.c -o mongoc/mongoc-ts-pool.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utf8proc/utf8proc.c -o utf8proc/utf8proc.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-structured-log.c -o mongoc/mongoc-structured-log.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mongoc/mongoc-log-and-monitor-private.c -o mongoc/mongoc-log-and-monitor-private.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-oid.c -o common/common-oid.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-json.c -o common/common-json.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c common/common-string.c -o common/common-string.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/hexlify.c -o kms/hexlify.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_kv_list.c -o kms/kms_kv_list.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_request.c -o kms/kms_request.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_response.c -o kms/kms_response.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_b64.c -o kms/kms_b64.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_crypto_libcrypto.c -o kms/kms_crypto_libcrypto.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_decrypt_request.c -o kms/kms_decrypt_request.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_message.c -o kms/kms_message.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_request_opt.c -o kms/kms_request_opt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_response_parser.c -o kms/kms_response_parser.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_caller_identity_request.c -o kms/kms_caller_identity_request.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_encrypt_request.c -o kms/kms_encrypt_request.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/kms_request_str.c -o kms/kms_request_str.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c kms/sort.c -o kms/sort.o ar rcs mongoc/libstatmongoc.a bson/bcon.o bson/bson-clock.o bson/bson-context.o common/common-md5.o bson/bson-error.o bson/bson-iso8601.o bson/bson-iter.o bson/bson-json.o bson/bson-keys.o bson/bson-md5.o bson/bson-memory.o bson/bson-oid.o bson/bson-reader.o bson/bson-string.o bson/bson-timegm.o bson/bson-utf8.o bson/bson-value.o bson/bson.o bson/bson-decimal128.o jsonsl/jsonsl.o mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o mongoc/mongoc-bulk-operation.o mongoc/mongoc-client-pool.o mongoc/mongoc-client.o mongoc/mongoc-cluster.o mongoc/mongoc-collection.o mongoc/mongoc-counters.o mongoc/mongoc-cursor-array.o mongoc/mongoc-cursor.o mongoc/mongoc-database.o mongoc/mongoc-gridfs-file-list.o mongoc/mongoc-gridfs-file-page.o mongoc/mongoc-gridfs-file.o mongoc/mongoc-gridfs.o mongoc/mongoc-index.o mongoc/mongoc-stream-gridfs.o mongoc/mongoc-init.o mongoc/mongoc-list.o mongoc/mongoc-log.o mongoc/mongoc-rand-openssl.o mongoc/mongoc-read-prefs.o mongoc/mongoc-rpc.o mongoc/mongoc-sasl.o mongoc/mongoc-scram.o mongoc/mongoc-socket.o mongoc/mongoc-ssl.o mongoc/mongoc-stream-buffered.o mongoc/mongoc-stream-socket.o mongoc/mongoc-stream-tls.o mongoc/mongoc-stream.o mongoc/mongoc-uri.o mongoc/mongoc-util.o mongoc/mongoc-write-command.o mongoc/mongoc-write-concern.o mongoc/mongoc-topology-description-apm.o mongoc/mongoc-async.o mongoc/mongoc-async-cmd.o mongoc/mongoc-host-list.o mongoc/mongoc-set.o mongoc/mongoc-server-description.o mongoc/mongoc-topology-description.o mongoc/mongoc-topology.o mongoc/mongoc-topology-scanner.o mongoc/mongoc-version-functions.o mongoc/mongoc-memcmp.o mongoc/mongoc-server-stream.o mongoc/mongoc-find-and-modify.o mongoc/mongoc-read-concern.o mongoc/mongoc-openssl.o mongoc/mongoc-apm.o mongoc/mongoc-crypto.o mongoc/mongoc-crypto-common-crypto.o mongoc/mongoc-crypto-openssl.o mongoc/mongoc-handshake.o mongoc/mongoc-stream-tls-openssl.o mongoc/mongoc-stream-tls-openssl-bio.o mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o mongoc/mongoc-change-stream.o mongoc/mongoc-client-session.o mongoc/mongoc-cluster-cyrus.o mongoc/mongoc-compression.o mongoc/mongoc-cyrus.o mongoc/mongoc-linux-distro-scanner.o mongoc/mongoc-stream-file.o mongoc/mcd-rpc.o mongoc/mongoc-deprioritized-servers.o mongoc/mongoc-opts.o mongoc/mongoc-opts-helpers.o mongoc/mongoc-cursor-cmd.o mongoc/mongoc-cursor-cmd-deprecated.o mongoc/mongoc-cursor-find.o mongoc/mongoc-cursor-find-cmd.o mongoc/mongoc-cursor-find-opquery.o mongoc/mongoc-cursor-legacy.o mongoc/mongoc-error.o mongoc/mongoc-aggregate.o mongoc/mongoc-client-side-encryption.o mongoc/mongoc-cursor-change-stream.o mongoc/mongoc-change-stream.o mongoc/mongoc-cluster-aws.o mongoc/mongoc-generation-map.o mongoc/mongoc-timeout.o mongoc/mongoc-server-monitor.o mongoc/mongoc-topology-background-monitoring.o common/common-thread.o mongoc/mongoc-optional.o mongoc/mongoc-server-api.o mongoc/mongoc-http.o mongoc/mongoc-ocsp-cache.o mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o utf8proc/utf8proc.o mongoc/mongoc-structured-log.o mongoc/mongoc-log-and-monitor-private.o common/common-oid.o common/common-json.o common/common-string.o kms/hexlify.o kms/kms_kv_list.o kms/kms_request.o kms/kms_response.o kms/kms_b64.o kms/kms_crypto_libcrypto.o kms/kms_decrypt_request.o kms/kms_message.o kms/kms_request_opt.o kms/kms_response_parser.o kms/kms_caller_identity_request.o kms/kms_encrypt_request.o kms/kms_request_str.o kms/sort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o mongolite.so bson.o client.o collection.o cursor.o gridfs.o hex.o mongo_log.o reader.o utils.o -Lmongoc -lstatmongoc -lsasl2 -L/home/th798/.conda/envs/emacs1/lib -lssl -lcrypto -lresolv -lz rm -f mongoc/libstatmongoc.a bson/bcon.o bson/bson-clock.o bson/bson-context.o common/common-md5.o bson/bson-error.o bson/bson-iso8601.o bson/bson-iter.o bson/bson-json.o bson/bson-keys.o bson/bson-md5.o bson/bson-memory.o bson/bson-oid.o bson/bson-reader.o bson/bson-string.o bson/bson-timegm.o bson/bson-utf8.o bson/bson-value.o bson/bson.o bson/bson-decimal128.o jsonsl/jsonsl.o mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o mongoc/mongoc-bulk-operation.o mongoc/mongoc-client-pool.o mongoc/mongoc-client.o mongoc/mongoc-cluster.o mongoc/mongoc-collection.o mongoc/mongoc-counters.o mongoc/mongoc-cursor-array.o mongoc/mongoc-cursor.o mongoc/mongoc-database.o mongoc/mongoc-gridfs-file-list.o mongoc/mongoc-gridfs-file-page.o mongoc/mongoc-gridfs-file.o mongoc/mongoc-gridfs.o mongoc/mongoc-index.o mongoc/mongoc-stream-gridfs.o mongoc/mongoc-init.o mongoc/mongoc-list.o mongoc/mongoc-log.o mongoc/mongoc-rand-openssl.o mongoc/mongoc-read-prefs.o mongoc/mongoc-rpc.o mongoc/mongoc-sasl.o mongoc/mongoc-scram.o mongoc/mongoc-socket.o mongoc/mongoc-ssl.o mongoc/mongoc-stream-buffered.o mongoc/mongoc-stream-socket.o mongoc/mongoc-stream-tls.o mongoc/mongoc-stream.o mongoc/mongoc-uri.o mongoc/mongoc-util.o mongoc/mongoc-write-command.o mongoc/mongoc-write-concern.o mongoc/mongoc-topology-description-apm.o mongoc/mongoc-async.o mongoc/mongoc-async-cmd.o mongoc/mongoc-host-list.o mongoc/mongoc-set.o mongoc/mongoc-server-description.o mongoc/mongoc-topology-description.o mongoc/mongoc-topology.o mongoc/mongoc-topology-scanner.o mongoc/mongoc-version-functions.o mongoc/mongoc-memcmp.o mongoc/mongoc-server-stream.o mongoc/mongoc-find-and-modify.o mongoc/mongoc-read-concern.o mongoc/mongoc-openssl.o mongoc/mongoc-apm.o mongoc/mongoc-crypto.o mongoc/mongoc-crypto-common-crypto.o mongoc/mongoc-crypto-openssl.o mongoc/mongoc-handshake.o mongoc/mongoc-stream-tls-openssl.o mongoc/mongoc-stream-tls-openssl-bio.o mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o mongoc/mongoc-change-stream.o mongoc/mongoc-client-session.o mongoc/mongoc-cluster-cyrus.o mongoc/mongoc-compression.o mongoc/mongoc-cyrus.o mongoc/mongoc-linux-distro-scanner.o mongoc/mongoc-stream-file.o mongoc/mcd-rpc.o mongoc/mongoc-deprioritized-servers.o mongoc/mongoc-opts.o mongoc/mongoc-opts-helpers.o mongoc/mongoc-cursor-cmd.o mongoc/mongoc-cursor-cmd-deprecated.o mongoc/mongoc-cursor-find.o mongoc/mongoc-cursor-find-cmd.o mongoc/mongoc-cursor-find-opquery.o mongoc/mongoc-cursor-legacy.o mongoc/mongoc-error.o mongoc/mongoc-aggregate.o mongoc/mongoc-client-side-encryption.o mongoc/mongoc-cursor-change-stream.o mongoc/mongoc-change-stream.o mongoc/mongoc-cluster-aws.o mongoc/mongoc-generation-map.o mongoc/mongoc-timeout.o mongoc/mongoc-server-monitor.o mongoc/mongoc-topology-background-monitoring.o common/common-thread.o mongoc/mongoc-optional.o mongoc/mongoc-server-api.o mongoc/mongoc-http.o mongoc/mongoc-ocsp-cache.o mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o utf8proc/utf8proc.o mongoc/mongoc-structured-log.o mongoc/mongoc-log-and-monitor-private.o common/common-oid.o common/common-json.o common/common-string.o kms/hexlify.o kms/kms_kv_list.o kms/kms_request.o kms/kms_response.o kms/kms_b64.o kms/kms_crypto_libcrypto.o kms/kms_decrypt_request.o kms/kms_message.o kms/kms_request_opt.o kms/kms_response_parser.o kms/kms_caller_identity_request.o kms/kms_encrypt_request.o kms/kms_request_str.o kms/sort.o installing to /tmp/th798/16170482/R-release/953/library/00LOCK-mongolite/00new/mongolite/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mongolite) * installing *source* package 'listviewer' ... ** package 'listviewer' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (listviewer) * installing *source* package 'One4All' ... ** package 'One4All' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (One4All) The downloaded source packages are in '/tmp/th798/16170482/RtmpJAyYRL/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 45.715 5.544 202.628 > print(Sys.time()) [1] "2025-03-28 01:38:24 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-03-28 01:38:24 MST" Installing package into '/tmp/th798/16170482/R-release/953/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16170482/R-release/953/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-28 01:39:02 MST" * using log directory '/tmp/th798/16170482/R-release/953/One4All.Rcheck' * using R version 4.4.3 (2025-02-28) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'One4All/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'One4All' version '0.5' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'One4All' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 21 marked UTF-8 strings * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See '/tmp/th798/16170482/R-release/953/One4All.Rcheck/00check.log' for details. [1] "2025-03-28 01:52:27 MST" [1] "2025-03-28 01:52:27 MST" Installing package into '/tmp/th798/16170482/R-release/953/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16170482/R-release/953/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-28 01:53:05 MST" * using log directory '/tmp/th798/16170482/R-release/953/One4All.Rcheck' * using R version 4.4.3 (2025-02-28) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'One4All/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'One4All' version '0.5' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'One4All' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 21 marked UTF-8 strings * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See '/tmp/th798/16170482/R-release/953/One4All.Rcheck/00check.log' for details. [1] "2025-03-28 02:02:44 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: Empty data.table (0 rows and 3 cols): checking,master,release > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } >