Note: the module "R" cannot be unloaded because it was not loaded.

WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-03-28 r88067) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

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> cargs <- commandArgs(trailingOnly=TRUE)
> if(length(cargs)==0){
+   ## before running interactively, make sure to start emacs/R with
+   ## environment defined in /scratch/...check_one.sh, particularly
+   ## R_LIBS_USER=/tmp/... otherwise we get error when installing
+   ## data.table.
+   base <- "/scratch/th798/data.table-revdeps/*"
+   cargs <- c(
+     Sys.glob(file.path(base,"deps.csv")),
+     "349",
+     Sys.glob(file.path(base, "data.table_release_*tar.gz")),
+     Sys.glob(file.path(base, "data.table_master_*tar.gz"))
+   )
+ }
> names(cargs) <- c("deps.csv", "task.str", "release", "master")
> dput(cargs)
c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-29/deps.csv", 
task.str = "1251", release = "/scratch/th798/data.table-revdeps/2025-03-29/data.table_release_1.17.0.tar.gz", 
master = "/scratch/th798/data.table-revdeps/2025-03-29/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz"
)
> (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers
[1] "/tmp/th798/16180359/R-devel/1251"
> if(requireNamespace("R.cache"))R.cache::getCachePath()
Loading required namespace: R.cache
[1] "/tmp/th798/16180359/R-devel/1251/R.cache"
> task.id <- as.integer(cargs[["task.str"]])
> deps.df <- read.csv(cargs[["deps.csv"]])
> (rev.dep <- deps.df$Package[task.id])
[1] "rtsdata"
> job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id)
> setwd(task.dir)
> .libPaths()
[1] "/tmp/th798/16180359/R-devel/1251/library"
[2] "/projects/genomic-ml/R/R-devel/library"  
> options(repos=c(#this should be in ~/.Rprofile too.
+   CRAN="http://cloud.r-project.org"))
> print(Sys.time())
[1] "2025-03-29 01:17:51 MST"
> install.time <- system.time({
+   install.packages(rev.dep, dep=TRUE)
+ })
Installing package into '/tmp/th798/16180359/R-devel/1251/library'
(as 'lib' is unspecified)
also installing the dependencies 'Quandl', 'mongolite', 'brotli', 'RQuantLib'

trying URL 'http://cloud.r-project.org/src/contrib/Quandl_2.11.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/mongolite_3.1.2.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/brotli_1.3.2.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/RQuantLib_0.4.25.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/rtsdata_0.1.4.tar.gz'
* installing *source* package 'Quandl' ...
** this is package 'Quandl' version '2.11.0'
** package 'Quandl' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Quandl)
* installing *source* package 'mongolite' ...
** this is package 'mongolite' version '3.1.2'
** package 'mongolite' successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/home/th798/.conda/envs/emacs1/include
Using PKG_LIBS=-lsasl2 -L/home/th798/.conda/envs/emacs1/lib -lssl -lcrypto -lresolv
SASL has sasl_client_done.
Compiling with extra alignment.
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson.c -o bson.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c client.c -o client.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c collection.c -o collection.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cursor.c -o cursor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gridfs.c -o gridfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c hex.c -o hex.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongo_log.c -o mongo_log.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reader.c -o reader.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bcon.c -o bson/bcon.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-clock.c -o bson/bson-clock.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-context.c -o bson/bson-context.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-md5.c -o common/common-md5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-error.c -o bson/bson-error.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-iso8601.c -o bson/bson-iso8601.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-iter.c -o bson/bson-iter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-json.c -o bson/bson-json.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-keys.c -o bson/bson-keys.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-md5.c -o bson/bson-md5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-memory.c -o bson/bson-memory.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-oid.c -o bson/bson-oid.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-reader.c -o bson/bson-reader.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-string.c -o bson/bson-string.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-timegm.c -o bson/bson-timegm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-utf8.c -o bson/bson-utf8.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-value.c -o bson/bson-value.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson.c -o bson/bson.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-decimal128.c -o bson/bson-decimal128.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c jsonsl/jsonsl.c -o jsonsl/jsonsl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-array.c -o mongoc/mongoc-array.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-b64.c -o common/common-b64.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-buffer.c -o mongoc/mongoc-buffer.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-bulk-operation.c -o mongoc/mongoc-bulk-operation.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-client-pool.c -o mongoc/mongoc-client-pool.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-client.c -o mongoc/mongoc-client.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cluster.c -o mongoc/mongoc-cluster.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-collection.c -o mongoc/mongoc-collection.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-counters.c -o mongoc/mongoc-counters.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-array.c -o mongoc/mongoc-cursor-array.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor.c -o mongoc/mongoc-cursor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-database.c -o mongoc/mongoc-database.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-gridfs-file-list.c -o mongoc/mongoc-gridfs-file-list.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-gridfs-file-page.c -o mongoc/mongoc-gridfs-file-page.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-gridfs-file.c -o mongoc/mongoc-gridfs-file.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-gridfs.c -o mongoc/mongoc-gridfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-index.c -o mongoc/mongoc-index.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-gridfs.c -o mongoc/mongoc-stream-gridfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-init.c -o mongoc/mongoc-init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-list.c -o mongoc/mongoc-list.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-log.c -o mongoc/mongoc-log.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-rand-openssl.c -o mongoc/mongoc-rand-openssl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-read-prefs.c -o mongoc/mongoc-read-prefs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-rpc.c -o mongoc/mongoc-rpc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-sasl.c -o mongoc/mongoc-sasl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-scram.c -o mongoc/mongoc-scram.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-socket.c -o mongoc/mongoc-socket.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-ssl.c -o mongoc/mongoc-ssl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-buffered.c -o mongoc/mongoc-stream-buffered.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-socket.c -o mongoc/mongoc-stream-socket.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-tls.c -o mongoc/mongoc-stream-tls.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream.c -o mongoc/mongoc-stream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-uri.c -o mongoc/mongoc-uri.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-util.c -o mongoc/mongoc-util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-write-command.c -o mongoc/mongoc-write-command.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-write-concern.c -o mongoc/mongoc-write-concern.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-topology-description-apm.c -o mongoc/mongoc-topology-description-apm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-async.c -o mongoc/mongoc-async.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-async-cmd.c -o mongoc/mongoc-async-cmd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-host-list.c -o mongoc/mongoc-host-list.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-set.c -o mongoc/mongoc-set.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-server-description.c -o mongoc/mongoc-server-description.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-topology-description.c -o mongoc/mongoc-topology-description.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-topology.c -o mongoc/mongoc-topology.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-topology-scanner.c -o mongoc/mongoc-topology-scanner.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-version-functions.c -o mongoc/mongoc-version-functions.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-memcmp.c -o mongoc/mongoc-memcmp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-server-stream.c -o mongoc/mongoc-server-stream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-find-and-modify.c -o mongoc/mongoc-find-and-modify.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-read-concern.c -o mongoc/mongoc-read-concern.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-openssl.c -o mongoc/mongoc-openssl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-apm.c -o mongoc/mongoc-apm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-crypto.c -o mongoc/mongoc-crypto.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-crypto-common-crypto.c -o mongoc/mongoc-crypto-common-crypto.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-crypto-openssl.c -o mongoc/mongoc-crypto-openssl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-handshake.c -o mongoc/mongoc-handshake.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-tls-openssl.c -o mongoc/mongoc-stream-tls-openssl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-tls-openssl-bio.c -o mongoc/mongoc-stream-tls-openssl-bio.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cluster-sasl.c -o mongoc/mongoc-cluster-sasl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cmd.c -o mongoc/mongoc-cmd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-change-stream.c -o mongoc/mongoc-change-stream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-client-session.c -o mongoc/mongoc-client-session.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cluster-cyrus.c -o mongoc/mongoc-cluster-cyrus.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-compression.c -o mongoc/mongoc-compression.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cyrus.c -o mongoc/mongoc-cyrus.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-linux-distro-scanner.c -o mongoc/mongoc-linux-distro-scanner.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-file.c -o mongoc/mongoc-stream-file.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mcd-rpc.c -o mongoc/mcd-rpc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-deprioritized-servers.c -o mongoc/mongoc-deprioritized-servers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-opts.c -o mongoc/mongoc-opts.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-opts-helpers.c -o mongoc/mongoc-opts-helpers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-cmd.c -o mongoc/mongoc-cursor-cmd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-cmd-deprecated.c -o mongoc/mongoc-cursor-cmd-deprecated.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-find.c -o mongoc/mongoc-cursor-find.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-find-cmd.c -o mongoc/mongoc-cursor-find-cmd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-find-opquery.c -o mongoc/mongoc-cursor-find-opquery.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-legacy.c -o mongoc/mongoc-cursor-legacy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-error.c -o mongoc/mongoc-error.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-aggregate.c -o mongoc/mongoc-aggregate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-client-side-encryption.c -o mongoc/mongoc-client-side-encryption.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-change-stream.c -o mongoc/mongoc-cursor-change-stream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cluster-aws.c -o mongoc/mongoc-cluster-aws.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-generation-map.c -o mongoc/mongoc-generation-map.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-timeout.c -o mongoc/mongoc-timeout.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-server-monitor.c -o mongoc/mongoc-server-monitor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-topology-background-monitoring.c -o mongoc/mongoc-topology-background-monitoring.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-thread.c -o common/common-thread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-optional.c -o mongoc/mongoc-optional.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-server-api.c -o mongoc/mongoc-server-api.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-http.c -o mongoc/mongoc-http.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-ocsp-cache.c -o mongoc/mongoc-ocsp-cache.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-shared.c -o mongoc/mongoc-shared.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-ts-pool.c -o mongoc/mongoc-ts-pool.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utf8proc/utf8proc.c -o utf8proc/utf8proc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-structured-log.c -o mongoc/mongoc-structured-log.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-log-and-monitor-private.c -o mongoc/mongoc-log-and-monitor-private.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-oid.c -o common/common-oid.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-json.c -o common/common-json.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-string.c -o common/common-string.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/hexlify.c -o kms/hexlify.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_kv_list.c -o kms/kms_kv_list.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_request.c -o kms/kms_request.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_response.c -o kms/kms_response.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_b64.c -o kms/kms_b64.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_crypto_libcrypto.c -o kms/kms_crypto_libcrypto.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_decrypt_request.c -o kms/kms_decrypt_request.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_message.c -o kms/kms_message.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_request_opt.c -o kms/kms_request_opt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_response_parser.c -o kms/kms_response_parser.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_caller_identity_request.c -o kms/kms_caller_identity_request.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_encrypt_request.c -o kms/kms_encrypt_request.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_request_str.c -o kms/kms_request_str.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/sort.c -o kms/sort.o
ar rcs mongoc/libstatmongoc.a bson/bcon.o bson/bson-clock.o bson/bson-context.o common/common-md5.o bson/bson-error.o bson/bson-iso8601.o bson/bson-iter.o bson/bson-json.o bson/bson-keys.o bson/bson-md5.o bson/bson-memory.o bson/bson-oid.o bson/bson-reader.o bson/bson-string.o bson/bson-timegm.o bson/bson-utf8.o bson/bson-value.o bson/bson.o bson/bson-decimal128.o jsonsl/jsonsl.o mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o mongoc/mongoc-bulk-operation.o mongoc/mongoc-client-pool.o mongoc/mongoc-client.o mongoc/mongoc-cluster.o mongoc/mongoc-collection.o mongoc/mongoc-counters.o mongoc/mongoc-cursor-array.o mongoc/mongoc-cursor.o mongoc/mongoc-database.o mongoc/mongoc-gridfs-file-list.o mongoc/mongoc-gridfs-file-page.o mongoc/mongoc-gridfs-file.o mongoc/mongoc-gridfs.o mongoc/mongoc-index.o mongoc/mongoc-stream-gridfs.o mongoc/mongoc-init.o mongoc/mongoc-list.o mongoc/mongoc-log.o mongoc/mongoc-rand-openssl.o mongoc/mongoc-read-prefs.o mongoc/mongoc-rpc.o mongoc/mongoc-sasl.o mongoc/mongoc-scram.o mongoc/mongoc-socket.o mongoc/mongoc-ssl.o mongoc/mongoc-stream-buffered.o	mongoc/mongoc-stream-socket.o mongoc/mongoc-stream-tls.o mongoc/mongoc-stream.o mongoc/mongoc-uri.o mongoc/mongoc-util.o mongoc/mongoc-write-command.o mongoc/mongoc-write-concern.o mongoc/mongoc-topology-description-apm.o mongoc/mongoc-async.o mongoc/mongoc-async-cmd.o mongoc/mongoc-host-list.o mongoc/mongoc-set.o mongoc/mongoc-server-description.o mongoc/mongoc-topology-description.o mongoc/mongoc-topology.o mongoc/mongoc-topology-scanner.o mongoc/mongoc-version-functions.o mongoc/mongoc-memcmp.o mongoc/mongoc-server-stream.o mongoc/mongoc-find-and-modify.o mongoc/mongoc-read-concern.o mongoc/mongoc-openssl.o mongoc/mongoc-apm.o mongoc/mongoc-crypto.o mongoc/mongoc-crypto-common-crypto.o mongoc/mongoc-crypto-openssl.o mongoc/mongoc-handshake.o mongoc/mongoc-stream-tls-openssl.o mongoc/mongoc-stream-tls-openssl-bio.o mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o mongoc/mongoc-change-stream.o mongoc/mongoc-client-session.o mongoc/mongoc-cluster-cyrus.o mongoc/mongoc-compression.o mongoc/mongoc-cyrus.o mongoc/mongoc-linux-distro-scanner.o mongoc/mongoc-stream-file.o mongoc/mcd-rpc.o mongoc/mongoc-deprioritized-servers.o mongoc/mongoc-opts.o mongoc/mongoc-opts-helpers.o mongoc/mongoc-cursor-cmd.o mongoc/mongoc-cursor-cmd-deprecated.o mongoc/mongoc-cursor-find.o mongoc/mongoc-cursor-find-cmd.o mongoc/mongoc-cursor-find-opquery.o mongoc/mongoc-cursor-legacy.o mongoc/mongoc-error.o mongoc/mongoc-aggregate.o mongoc/mongoc-client-side-encryption.o mongoc/mongoc-cursor-change-stream.o mongoc/mongoc-change-stream.o mongoc/mongoc-cluster-aws.o mongoc/mongoc-generation-map.o mongoc/mongoc-timeout.o mongoc/mongoc-server-monitor.o mongoc/mongoc-topology-background-monitoring.o common/common-thread.o mongoc/mongoc-optional.o mongoc/mongoc-server-api.o mongoc/mongoc-http.o mongoc/mongoc-ocsp-cache.o mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o utf8proc/utf8proc.o mongoc/mongoc-structured-log.o mongoc/mongoc-log-and-monitor-private.o common/common-oid.o common/common-json.o common/common-string.o kms/hexlify.o kms/kms_kv_list.o kms/kms_request.o kms/kms_response.o kms/kms_b64.o kms/kms_crypto_libcrypto.o kms/kms_decrypt_request.o kms/kms_message.o kms/kms_request_opt.o kms/kms_response_parser.o kms/kms_caller_identity_request.o kms/kms_encrypt_request.o kms/kms_request_str.o kms/sort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o mongolite.so bson.o client.o collection.o cursor.o gridfs.o hex.o mongo_log.o reader.o utils.o -Lmongoc -lstatmongoc -lsasl2 -L/home/th798/.conda/envs/emacs1/lib -lssl -lcrypto -lresolv -lz
rm -f mongoc/libstatmongoc.a bson/bcon.o bson/bson-clock.o bson/bson-context.o common/common-md5.o bson/bson-error.o bson/bson-iso8601.o bson/bson-iter.o bson/bson-json.o bson/bson-keys.o bson/bson-md5.o bson/bson-memory.o bson/bson-oid.o bson/bson-reader.o bson/bson-string.o bson/bson-timegm.o bson/bson-utf8.o bson/bson-value.o bson/bson.o bson/bson-decimal128.o jsonsl/jsonsl.o mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o mongoc/mongoc-bulk-operation.o mongoc/mongoc-client-pool.o mongoc/mongoc-client.o mongoc/mongoc-cluster.o mongoc/mongoc-collection.o mongoc/mongoc-counters.o mongoc/mongoc-cursor-array.o mongoc/mongoc-cursor.o mongoc/mongoc-database.o mongoc/mongoc-gridfs-file-list.o mongoc/mongoc-gridfs-file-page.o mongoc/mongoc-gridfs-file.o mongoc/mongoc-gridfs.o mongoc/mongoc-index.o mongoc/mongoc-stream-gridfs.o mongoc/mongoc-init.o mongoc/mongoc-list.o mongoc/mongoc-log.o mongoc/mongoc-rand-openssl.o mongoc/mongoc-read-prefs.o mongoc/mongoc-rpc.o mongoc/mongoc-sasl.o mongoc/mongoc-scram.o mongoc/mongoc-socket.o mongoc/mongoc-ssl.o mongoc/mongoc-stream-buffered.o	mongoc/mongoc-stream-socket.o mongoc/mongoc-stream-tls.o mongoc/mongoc-stream.o mongoc/mongoc-uri.o mongoc/mongoc-util.o mongoc/mongoc-write-command.o mongoc/mongoc-write-concern.o mongoc/mongoc-topology-description-apm.o mongoc/mongoc-async.o mongoc/mongoc-async-cmd.o mongoc/mongoc-host-list.o mongoc/mongoc-set.o mongoc/mongoc-server-description.o mongoc/mongoc-topology-description.o mongoc/mongoc-topology.o mongoc/mongoc-topology-scanner.o mongoc/mongoc-version-functions.o mongoc/mongoc-memcmp.o mongoc/mongoc-server-stream.o mongoc/mongoc-find-and-modify.o mongoc/mongoc-read-concern.o mongoc/mongoc-openssl.o mongoc/mongoc-apm.o mongoc/mongoc-crypto.o mongoc/mongoc-crypto-common-crypto.o mongoc/mongoc-crypto-openssl.o mongoc/mongoc-handshake.o mongoc/mongoc-stream-tls-openssl.o mongoc/mongoc-stream-tls-openssl-bio.o mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o mongoc/mongoc-change-stream.o mongoc/mongoc-client-session.o mongoc/mongoc-cluster-cyrus.o mongoc/mongoc-compression.o mongoc/mongoc-cyrus.o mongoc/mongoc-linux-distro-scanner.o mongoc/mongoc-stream-file.o mongoc/mcd-rpc.o mongoc/mongoc-deprioritized-servers.o mongoc/mongoc-opts.o mongoc/mongoc-opts-helpers.o mongoc/mongoc-cursor-cmd.o mongoc/mongoc-cursor-cmd-deprecated.o mongoc/mongoc-cursor-find.o mongoc/mongoc-cursor-find-cmd.o mongoc/mongoc-cursor-find-opquery.o mongoc/mongoc-cursor-legacy.o mongoc/mongoc-error.o mongoc/mongoc-aggregate.o mongoc/mongoc-client-side-encryption.o mongoc/mongoc-cursor-change-stream.o mongoc/mongoc-change-stream.o mongoc/mongoc-cluster-aws.o mongoc/mongoc-generation-map.o mongoc/mongoc-timeout.o mongoc/mongoc-server-monitor.o mongoc/mongoc-topology-background-monitoring.o common/common-thread.o mongoc/mongoc-optional.o mongoc/mongoc-server-api.o mongoc/mongoc-http.o mongoc/mongoc-ocsp-cache.o mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o utf8proc/utf8proc.o mongoc/mongoc-structured-log.o mongoc/mongoc-log-and-monitor-private.o common/common-oid.o common/common-json.o common/common-string.o kms/hexlify.o kms/kms_kv_list.o kms/kms_request.o kms/kms_response.o kms/kms_b64.o kms/kms_crypto_libcrypto.o kms/kms_decrypt_request.o kms/kms_message.o kms/kms_request_opt.o kms/kms_response_parser.o kms/kms_caller_identity_request.o kms/kms_encrypt_request.o kms/kms_request_str.o kms/sort.o
installing to /tmp/th798/16180359/R-devel/1251/library/00LOCK-mongolite/00new/mongolite/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mongolite)
* installing *source* package 'brotli' ...
** this is package 'brotli' version '1.3.2'
** package 'brotli' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrapper.c -o wrapper.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/backward_references.c -o enc/backward_references.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/bit_cost.c -o enc/bit_cost.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/block_splitter.c -o enc/block_splitter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/brotli_bit_stream.c -o enc/brotli_bit_stream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/cluster.c -o enc/cluster.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/compress_fragment_two_pass.c -o enc/compress_fragment_two_pass.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/compress_fragment.c -o enc/compress_fragment.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/encode.c -o enc/encode.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/entropy_encode.c -o enc/entropy_encode.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/histogram.c -o enc/histogram.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/literal_cost.c -o enc/literal_cost.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/memory.c -o enc/memory.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/metablock.c -o enc/metablock.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/static_dict.c -o enc/static_dict.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/utf8_util.c -o enc/utf8_util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dec/bit_reader.c -o dec/bit_reader.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dec/huffman.c -o dec/huffman.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dec/state.c -o dec/state.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dec/decode.c -o dec/decode.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/dictionary.c -o common/dictionary.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/backward_references_hq.c -o enc/backward_references_hq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/dictionary_hash.c -o enc/dictionary_hash.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/transform.c -o common/transform.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/encoder_dict.c -o enc/encoder_dict.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/platform.c -o common/platform.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/context.c -o common/context.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/constants.c -o common/constants.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/command.c -o enc/command.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/fast_log.c -o enc/fast_log.o
ar rcs enc/libstatbrotli.a enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o brotli.so wrapper.o -Lenc -lstatbrotli
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tools/brotli.c -o tools/brotli.o
mkdir -p ../inst/bin
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -o ../inst/bin/bro tools/brotli.o -Lenc -lstatbrotli -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64
rm -f enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o ../inst/bin/bro enc/libstatbrotli.a tools/brotli.o
installing to /tmp/th798/16180359/R-devel/1251/library/00LOCK-brotli/00new/brotli/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (brotli)
* installing *source* package 'RQuantLib' ...
** this is package 'RQuantLib' version '0.4.25'
** package 'RQuantLib' successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 accepts -g... (cached) yes
checking for /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 option to enable C++11 features... (cached) none needed
checking for R... yes
checking for quantlib-config... yes
checking for suitable QuantLib version... version 1.28 is not the most recent one. Consider upgrading.
checking for Boost development files... yes
checking for minimal Boost version... yes
configure: creating ./config.status
config.status: creating src/Makevars

RQuantlib 0.4.25 (using QuantLib 1.28)
======================================

cxxflags:   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include 
libs:       -L/home/th798/lib -L/home/th798/.conda/envs/emacs1/lib -lQuantLib

** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RcppExports.cpp -o RcppExports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c affine.cpp -o affine.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c asian.cpp -o asian.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c barrier_binary.cpp -o barrier_binary.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c bermudan.cpp -o bermudan.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c bonds.cpp -o bonds.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c calendars.cpp -o calendars.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c curves.cpp -o curves.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c dates.cpp -o dates.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c daycounter.cpp -o daycounter.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c discount.cpp -o discount.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c hullwhite.cpp -o hullwhite.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c implieds.cpp -o implieds.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c modules.cpp -o modules.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c sabr.cpp -o sabr.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c schedule.cpp -o schedule.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c utils.cpp -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c vanilla.cpp -o vanilla.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zero.cpp -o zero.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o RQuantLib.so RcppExports.o affine.o asian.o barrier_binary.o bermudan.o bonds.o calendars.o curves.o dates.o daycounter.o discount.o hullwhite.o implieds.o modules.o sabr.o schedule.o utils.o vanilla.o zero.o -L/home/th798/lib -L/home/th798/.conda/envs/emacs1/lib -lQuantLib -fopenmp
installing to /tmp/th798/16180359/R-devel/1251/library/00LOCK-RQuantLib/00new/RQuantLib/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RQuantLib)
* installing *source* package 'rtsdata' ...
** this is package 'rtsdata' version '0.1.4'
** package 'rtsdata' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rtsdata)

The downloaded source packages are in
	'/tmp/th798/16180359/RtmpJmzx1i/downloaded_packages'
> cat("Time to install revdep:\n")
Time to install revdep:
> print(install.time)
   user  system elapsed 
391.464  42.052 474.041 
> print(Sys.time())
[1] "2025-03-29 01:25:45 MST"
> downloaded_packages <- file.path(
+   tempdir(),
+   "downloaded_packages")
> dl.glob <- file.path(
+   downloaded_packages,
+   paste0(rev.dep,"_*.tar.gz"))
> rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob))
> colnames(rev.dep.dl.row) <- c("pkg","path")
> rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE)
> pkg.Rcheck <- paste0(rev.dep, ".Rcheck")
> 
> proj.dir <- "~/genomic-ml/data.table-revdeps"
> source(file.path(proj.dir, "myStatus.R"))
> Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]]))
> dir.create(Rvers, showWarnings=FALSE)
> Rcheck.list <- list()
> for(dt.version.short in c("release", "master")){
+   dt.tar.gz <- cargs[[dt.version.short]]
+   dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz)
+   print(Sys.time())
+   install.packages(dt.tar.gz, repos=NULL)
+   print(Sys.time())
+   check.cmd <- get_check_cmd(rev.dep.release.tar.gz)
+   system(check.cmd)
+   print(Sys.time())
+   dest.Rcheck <- file.path(
+     Rvers,
+     paste0(dt.version, ".Rcheck"))
+   unlink(dest.Rcheck, recursive=TRUE)
+   file.rename(pkg.Rcheck, dest.Rcheck)
+   Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log")
+ }
[1] "2025-03-29 01:25:45 MST"
Installing package into '/tmp/th798/16180359/R-devel/1251/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.17.0'
** package 'data.table' successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16180359/R-devel/1251/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-29 01:26:14 MST"
* using log directory '/tmp/th798/16180359/R-devel/1251/rtsdata.Rcheck'
* using R Under development (unstable) (2025-03-28 r88067)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'rtsdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rtsdata' version '0.1.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'rtsdata' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

[1] "2025-03-29 01:26:45 MST"
[1] "2025-03-29 01:26:45 MST"
Installing package into '/tmp/th798/16180359/R-devel/1251/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.17.99'
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16180359/R-devel/1251/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-29 01:27:15 MST"
* using log directory '/tmp/th798/16180359/R-devel/1251/rtsdata.Rcheck'
* using R Under development (unstable) (2025-03-28 r88067)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'rtsdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rtsdata' version '0.1.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'rtsdata' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

[1] "2025-03-29 01:27:46 MST"
> system(paste(c("diff -u", Rcheck.list), collapse=" "))
> library(data.table, lib.loc=R.home("library"))
> (sig.diff.dt <- myDiff(Rvers))
Key: <checking>
Empty data.table (0 rows and 3 cols): checking,master,release
> 
> ## If there are significant differences, use git bisect to find when
> ## they started.
> if(nrow(sig.diff.dt)){
+   dt.git <- file.path(task.dir, "data.table.git")
+   system(paste("cd ~/R/data.table && git fetch --tags"))
+   system(paste("git clone ~/R/data.table", dt.git))
+   release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]])
+   rev.parse.cmd <- paste(
+     "cd", dt.git, "&& git rev-parse master")
+   master.sha <- system(rev.parse.cmd, intern=TRUE)
+   merge.base.cmd <- paste(
+     "cd", dt.git, "&& git merge-base master", release.tag)
+   merge.base.sha <- system(merge.base.cmd, intern=TRUE)
+   old.sha <- merge.base.sha
+   run_R <- file.path(proj.dir, "install_dt_then_check_dep.R")
+   sig.diff.dt[, first.bad.commit := NA_character_]
+   sig.diff.dt[, comments := NA_character_]
+   for(diff.i in 1:nrow(sig.diff.dt)){
+     sig.diff.row <- sig.diff.dt[diff.i]
+     bisect.cmd <- paste(
+       "cd", dt.git, "&&",
+       "git bisect start &&",
+       "git bisect old", old.sha, "&&",
+       "git bisect new master &&",
+       "git bisect run",
+       R.home('bin/Rscript'),
+       run_R,
+       shQuote(sig.diff.row$checking),
+       sig.diff.row$release,
+       rev.dep.release.tar.gz,
+       release.tag)
+     print(bisect.cmd)
+     bisect.out <- system(bisect.cmd, intern=TRUE)
+     cat(bisect.out,sep="\n")
+     if(is.null(attr(bisect.out,"status"))){
+       first.bad.sha <- nc::capture_all_str(
+         bisect.out,
+         sha="[0-9a-f]+",
+         " is the first new commit")$sha
+       parent.cmd <- paste(
+         "cd ~/R/data.table && git log --pretty=%P -n 1",
+         first.bad.sha)
+       parent.sha <- system(parent.cmd, intern=TRUE)
+       sig.diff.dt[diff.i, first.bad.commit := first.bad.sha]
+       parent.msg <- paste0("parent=", parent.sha)
+       this.comment <- if(parent.sha==old.sha){
+         paste(parent.msg, "same as git bisect old")
+       }else if(first.bad.sha==master.sha){
+         paste("same as git bisect new=master,", parent.msg)
+       }else{
+         parent.msg
+       }
+       sig.diff.dt[diff.i, comments := this.comment]
+     }
+   }
+   ## add CRAN column.
+   sig.diff.dt[, CRAN := {
+     flavor <- get_flavor(Rvers)
+     details <- data.table(flavor=unique(flavor))[, {
+       base <- "https://www.r-project.org/nosvn/R.check/"
+       u <- paste0(base, flavor, "/", rev.dep, "-00check.txt")
+       check.txt <- tempfile()
+       tryCatch({
+         download.file(u, check.txt, quiet=TRUE)
+       }, error=function(e){
+         NULL
+       })
+       check.lines <- if(file.exists(check.txt)){
+         readLines(check.txt,encoding="UTF-8")
+       }else{
+         ""
+       }
+       repl.lines <- gsub("[\u2018\u2019]", "'", check.lines)
+       ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C.
+       myStatus(line.vec=repl.lines)
+     }, by=flavor]
+     select.dt <- data.table(flavor, checking)
+     details[select.dt, msg, on=.(flavor, checking)]
+   }]
+   dir.create(file.path(job.dir, Rvers))
+   diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv")
+   data.table::fwrite(sig.diff.dt, diffs.csv)
+   print(sig.diff.dt)
+ }
> 
WARNING: ignoring environment value of R_HOME

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> cargs <- commandArgs(trailingOnly=TRUE)
> if(length(cargs)==0){
+   ## before running interactively, make sure to start emacs/R with
+   ## environment defined in /scratch/...check_one.sh, particularly
+   ## R_LIBS_USER=/tmp/... otherwise we get error when installing
+   ## data.table.
+   base <- "/scratch/th798/data.table-revdeps/*"
+   cargs <- c(
+     Sys.glob(file.path(base,"deps.csv")),
+     "349",
+     Sys.glob(file.path(base, "data.table_release_*tar.gz")),
+     Sys.glob(file.path(base, "data.table_master_*tar.gz"))
+   )
+ }
> names(cargs) <- c("deps.csv", "task.str", "release", "master")
> dput(cargs)
c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-29/deps.csv", 
task.str = "1251", release = "/scratch/th798/data.table-revdeps/2025-03-29/data.table_release_1.17.0.tar.gz", 
master = "/scratch/th798/data.table-revdeps/2025-03-29/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz"
)
> (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers
[1] "/tmp/th798/16180359/R-release/1251"
> if(requireNamespace("R.cache"))R.cache::getCachePath()
Loading required namespace: R.cache
[1] "/tmp/th798/16180359/R-release/1251/R.cache"
> task.id <- as.integer(cargs[["task.str"]])
> deps.df <- read.csv(cargs[["deps.csv"]])
> (rev.dep <- deps.df$Package[task.id])
[1] "rtsdata"
> job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id)
> setwd(task.dir)
> .libPaths()
[1] "/tmp/th798/16180359/R-release/1251/library"
[2] "/projects/genomic-ml/R/R-release/library"  
> options(repos=c(#this should be in ~/.Rprofile too.
+   CRAN="http://cloud.r-project.org"))
> print(Sys.time())
[1] "2025-03-29 01:27:53 MST"
> install.time <- system.time({
+   install.packages(rev.dep, dep=TRUE)
+ })
Installing package into '/tmp/th798/16180359/R-release/1251/library'
(as 'lib' is unspecified)
also installing the dependencies 'Quandl', 'mongolite', 'brotli', 'RQuantLib'

trying URL 'http://cloud.r-project.org/src/contrib/Quandl_2.11.0.tar.gz'
Content type 'application/x-gzip' length 22890 bytes (22 KB)
==================================================
downloaded 22 KB

trying URL 'http://cloud.r-project.org/src/contrib/mongolite_3.1.2.tar.gz'
Content type 'application/x-gzip' length 1014601 bytes (990 KB)
==================================================
downloaded 990 KB

trying URL 'http://cloud.r-project.org/src/contrib/brotli_1.3.2.tar.gz'
Content type 'application/x-gzip' length 965396 bytes (942 KB)
==================================================
downloaded 942 KB

trying URL 'http://cloud.r-project.org/src/contrib/RQuantLib_0.4.25.tar.gz'
Content type 'application/x-gzip' length 196270 bytes (191 KB)
==================================================
downloaded 191 KB

trying URL 'http://cloud.r-project.org/src/contrib/rtsdata_0.1.4.tar.gz'
Content type 'application/x-gzip' length 16122 bytes (15 KB)
==================================================
downloaded 15 KB

* installing *source* package 'Quandl' ...
** package 'Quandl' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Quandl)
* installing *source* package 'mongolite' ...
** package 'mongolite' successfully unpacked and MD5 sums checked
** using staged installation
Found pkg-config cflags and libs!
Using PKG_CFLAGS=-I/home/th798/.conda/envs/emacs1/include
Using PKG_LIBS=-lsasl2 -L/home/th798/.conda/envs/emacs1/lib -lssl -lcrypto -lresolv
SASL has sasl_client_done.
Compiling with extra alignment.
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson.c -o bson.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c client.c -o client.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c collection.c -o collection.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cursor.c -o cursor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gridfs.c -o gridfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c hex.c -o hex.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongo_log.c -o mongo_log.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reader.c -o reader.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bcon.c -o bson/bcon.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-clock.c -o bson/bson-clock.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-context.c -o bson/bson-context.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-md5.c -o common/common-md5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-error.c -o bson/bson-error.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-iso8601.c -o bson/bson-iso8601.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-iter.c -o bson/bson-iter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-json.c -o bson/bson-json.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-keys.c -o bson/bson-keys.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-md5.c -o bson/bson-md5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-memory.c -o bson/bson-memory.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-oid.c -o bson/bson-oid.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-reader.c -o bson/bson-reader.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-string.c -o bson/bson-string.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-timegm.c -o bson/bson-timegm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-utf8.c -o bson/bson-utf8.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-value.c -o bson/bson-value.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson.c -o bson/bson.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bson/bson-decimal128.c -o bson/bson-decimal128.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c jsonsl/jsonsl.c -o jsonsl/jsonsl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-array.c -o mongoc/mongoc-array.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-b64.c -o common/common-b64.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-buffer.c -o mongoc/mongoc-buffer.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-bulk-operation.c -o mongoc/mongoc-bulk-operation.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-client-pool.c -o mongoc/mongoc-client-pool.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-client.c -o mongoc/mongoc-client.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cluster.c -o mongoc/mongoc-cluster.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-collection.c -o mongoc/mongoc-collection.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-counters.c -o mongoc/mongoc-counters.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-array.c -o mongoc/mongoc-cursor-array.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor.c -o mongoc/mongoc-cursor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-database.c -o mongoc/mongoc-database.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-gridfs-file-list.c -o mongoc/mongoc-gridfs-file-list.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-gridfs-file-page.c -o mongoc/mongoc-gridfs-file-page.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-gridfs-file.c -o mongoc/mongoc-gridfs-file.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-gridfs.c -o mongoc/mongoc-gridfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-index.c -o mongoc/mongoc-index.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-gridfs.c -o mongoc/mongoc-stream-gridfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-init.c -o mongoc/mongoc-init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-list.c -o mongoc/mongoc-list.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-log.c -o mongoc/mongoc-log.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-rand-openssl.c -o mongoc/mongoc-rand-openssl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-read-prefs.c -o mongoc/mongoc-read-prefs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-rpc.c -o mongoc/mongoc-rpc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-sasl.c -o mongoc/mongoc-sasl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-scram.c -o mongoc/mongoc-scram.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-socket.c -o mongoc/mongoc-socket.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-ssl.c -o mongoc/mongoc-ssl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-buffered.c -o mongoc/mongoc-stream-buffered.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-socket.c -o mongoc/mongoc-stream-socket.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-tls.c -o mongoc/mongoc-stream-tls.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream.c -o mongoc/mongoc-stream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-uri.c -o mongoc/mongoc-uri.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-util.c -o mongoc/mongoc-util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-write-command.c -o mongoc/mongoc-write-command.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-write-concern.c -o mongoc/mongoc-write-concern.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-topology-description-apm.c -o mongoc/mongoc-topology-description-apm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-async.c -o mongoc/mongoc-async.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-async-cmd.c -o mongoc/mongoc-async-cmd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-host-list.c -o mongoc/mongoc-host-list.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-set.c -o mongoc/mongoc-set.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-server-description.c -o mongoc/mongoc-server-description.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-topology-description.c -o mongoc/mongoc-topology-description.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-topology.c -o mongoc/mongoc-topology.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-topology-scanner.c -o mongoc/mongoc-topology-scanner.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-version-functions.c -o mongoc/mongoc-version-functions.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-memcmp.c -o mongoc/mongoc-memcmp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-server-stream.c -o mongoc/mongoc-server-stream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-find-and-modify.c -o mongoc/mongoc-find-and-modify.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-read-concern.c -o mongoc/mongoc-read-concern.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-openssl.c -o mongoc/mongoc-openssl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-apm.c -o mongoc/mongoc-apm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-crypto.c -o mongoc/mongoc-crypto.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-crypto-common-crypto.c -o mongoc/mongoc-crypto-common-crypto.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-crypto-openssl.c -o mongoc/mongoc-crypto-openssl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-handshake.c -o mongoc/mongoc-handshake.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-tls-openssl.c -o mongoc/mongoc-stream-tls-openssl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-tls-openssl-bio.c -o mongoc/mongoc-stream-tls-openssl-bio.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cluster-sasl.c -o mongoc/mongoc-cluster-sasl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cmd.c -o mongoc/mongoc-cmd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-change-stream.c -o mongoc/mongoc-change-stream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-client-session.c -o mongoc/mongoc-client-session.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cluster-cyrus.c -o mongoc/mongoc-cluster-cyrus.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-compression.c -o mongoc/mongoc-compression.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cyrus.c -o mongoc/mongoc-cyrus.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-linux-distro-scanner.c -o mongoc/mongoc-linux-distro-scanner.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-stream-file.c -o mongoc/mongoc-stream-file.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mcd-rpc.c -o mongoc/mcd-rpc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-deprioritized-servers.c -o mongoc/mongoc-deprioritized-servers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-opts.c -o mongoc/mongoc-opts.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-opts-helpers.c -o mongoc/mongoc-opts-helpers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-cmd.c -o mongoc/mongoc-cursor-cmd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-cmd-deprecated.c -o mongoc/mongoc-cursor-cmd-deprecated.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-find.c -o mongoc/mongoc-cursor-find.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-find-cmd.c -o mongoc/mongoc-cursor-find-cmd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-find-opquery.c -o mongoc/mongoc-cursor-find-opquery.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-legacy.c -o mongoc/mongoc-cursor-legacy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-error.c -o mongoc/mongoc-error.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-aggregate.c -o mongoc/mongoc-aggregate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-client-side-encryption.c -o mongoc/mongoc-client-side-encryption.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cursor-change-stream.c -o mongoc/mongoc-cursor-change-stream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-cluster-aws.c -o mongoc/mongoc-cluster-aws.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-generation-map.c -o mongoc/mongoc-generation-map.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-timeout.c -o mongoc/mongoc-timeout.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-server-monitor.c -o mongoc/mongoc-server-monitor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-topology-background-monitoring.c -o mongoc/mongoc-topology-background-monitoring.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-thread.c -o common/common-thread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-optional.c -o mongoc/mongoc-optional.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-server-api.c -o mongoc/mongoc-server-api.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-http.c -o mongoc/mongoc-http.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-ocsp-cache.c -o mongoc/mongoc-ocsp-cache.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-shared.c -o mongoc/mongoc-shared.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-ts-pool.c -o mongoc/mongoc-ts-pool.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utf8proc/utf8proc.c -o utf8proc/utf8proc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-structured-log.c -o mongoc/mongoc-structured-log.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mongoc/mongoc-log-and-monitor-private.c -o mongoc/mongoc-log-and-monitor-private.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-oid.c -o common/common-oid.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-json.c -o common/common-json.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/common-string.c -o common/common-string.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/hexlify.c -o kms/hexlify.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_kv_list.c -o kms/kms_kv_list.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_request.c -o kms/kms_request.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_response.c -o kms/kms_response.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_b64.c -o kms/kms_b64.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_crypto_libcrypto.c -o kms/kms_crypto_libcrypto.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_decrypt_request.c -o kms/kms_decrypt_request.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_message.c -o kms/kms_message.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_request_opt.c -o kms/kms_request_opt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_response_parser.c -o kms/kms_response_parser.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_caller_identity_request.c -o kms/kms_caller_identity_request.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_encrypt_request.c -o kms/kms_encrypt_request.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/kms_request_str.c -o kms/kms_request_str.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -Icommon -Ikms -Iutf8proc -D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE -D_GNU_SOURCE -DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO -D_DARWIN_C_SOURCE -DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED -I/home/th798/.conda/envs/emacs1/include -DMONGOC_HAVE_SASL_CLIENT_DONE -DBSON_EXTRA_ALIGN  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kms/sort.c -o kms/sort.o
ar rcs mongoc/libstatmongoc.a bson/bcon.o bson/bson-clock.o bson/bson-context.o common/common-md5.o bson/bson-error.o bson/bson-iso8601.o bson/bson-iter.o bson/bson-json.o bson/bson-keys.o bson/bson-md5.o bson/bson-memory.o bson/bson-oid.o bson/bson-reader.o bson/bson-string.o bson/bson-timegm.o bson/bson-utf8.o bson/bson-value.o bson/bson.o bson/bson-decimal128.o jsonsl/jsonsl.o mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o mongoc/mongoc-bulk-operation.o mongoc/mongoc-client-pool.o mongoc/mongoc-client.o mongoc/mongoc-cluster.o mongoc/mongoc-collection.o mongoc/mongoc-counters.o mongoc/mongoc-cursor-array.o mongoc/mongoc-cursor.o mongoc/mongoc-database.o mongoc/mongoc-gridfs-file-list.o mongoc/mongoc-gridfs-file-page.o mongoc/mongoc-gridfs-file.o mongoc/mongoc-gridfs.o mongoc/mongoc-index.o mongoc/mongoc-stream-gridfs.o mongoc/mongoc-init.o mongoc/mongoc-list.o mongoc/mongoc-log.o mongoc/mongoc-rand-openssl.o mongoc/mongoc-read-prefs.o mongoc/mongoc-rpc.o mongoc/mongoc-sasl.o mongoc/mongoc-scram.o mongoc/mongoc-socket.o mongoc/mongoc-ssl.o mongoc/mongoc-stream-buffered.o	mongoc/mongoc-stream-socket.o mongoc/mongoc-stream-tls.o mongoc/mongoc-stream.o mongoc/mongoc-uri.o mongoc/mongoc-util.o mongoc/mongoc-write-command.o mongoc/mongoc-write-concern.o mongoc/mongoc-topology-description-apm.o mongoc/mongoc-async.o mongoc/mongoc-async-cmd.o mongoc/mongoc-host-list.o mongoc/mongoc-set.o mongoc/mongoc-server-description.o mongoc/mongoc-topology-description.o mongoc/mongoc-topology.o mongoc/mongoc-topology-scanner.o mongoc/mongoc-version-functions.o mongoc/mongoc-memcmp.o mongoc/mongoc-server-stream.o mongoc/mongoc-find-and-modify.o mongoc/mongoc-read-concern.o mongoc/mongoc-openssl.o mongoc/mongoc-apm.o mongoc/mongoc-crypto.o mongoc/mongoc-crypto-common-crypto.o mongoc/mongoc-crypto-openssl.o mongoc/mongoc-handshake.o mongoc/mongoc-stream-tls-openssl.o mongoc/mongoc-stream-tls-openssl-bio.o mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o mongoc/mongoc-change-stream.o mongoc/mongoc-client-session.o mongoc/mongoc-cluster-cyrus.o mongoc/mongoc-compression.o mongoc/mongoc-cyrus.o mongoc/mongoc-linux-distro-scanner.o mongoc/mongoc-stream-file.o mongoc/mcd-rpc.o mongoc/mongoc-deprioritized-servers.o mongoc/mongoc-opts.o mongoc/mongoc-opts-helpers.o mongoc/mongoc-cursor-cmd.o mongoc/mongoc-cursor-cmd-deprecated.o mongoc/mongoc-cursor-find.o mongoc/mongoc-cursor-find-cmd.o mongoc/mongoc-cursor-find-opquery.o mongoc/mongoc-cursor-legacy.o mongoc/mongoc-error.o mongoc/mongoc-aggregate.o mongoc/mongoc-client-side-encryption.o mongoc/mongoc-cursor-change-stream.o mongoc/mongoc-change-stream.o mongoc/mongoc-cluster-aws.o mongoc/mongoc-generation-map.o mongoc/mongoc-timeout.o mongoc/mongoc-server-monitor.o mongoc/mongoc-topology-background-monitoring.o common/common-thread.o mongoc/mongoc-optional.o mongoc/mongoc-server-api.o mongoc/mongoc-http.o mongoc/mongoc-ocsp-cache.o mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o utf8proc/utf8proc.o mongoc/mongoc-structured-log.o mongoc/mongoc-log-and-monitor-private.o common/common-oid.o common/common-json.o common/common-string.o kms/hexlify.o kms/kms_kv_list.o kms/kms_request.o kms/kms_response.o kms/kms_b64.o kms/kms_crypto_libcrypto.o kms/kms_decrypt_request.o kms/kms_message.o kms/kms_request_opt.o kms/kms_response_parser.o kms/kms_caller_identity_request.o kms/kms_encrypt_request.o kms/kms_request_str.o kms/sort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o mongolite.so bson.o client.o collection.o cursor.o gridfs.o hex.o mongo_log.o reader.o utils.o -Lmongoc -lstatmongoc -lsasl2 -L/home/th798/.conda/envs/emacs1/lib -lssl -lcrypto -lresolv -lz
rm -f mongoc/libstatmongoc.a bson/bcon.o bson/bson-clock.o bson/bson-context.o common/common-md5.o bson/bson-error.o bson/bson-iso8601.o bson/bson-iter.o bson/bson-json.o bson/bson-keys.o bson/bson-md5.o bson/bson-memory.o bson/bson-oid.o bson/bson-reader.o bson/bson-string.o bson/bson-timegm.o bson/bson-utf8.o bson/bson-value.o bson/bson.o bson/bson-decimal128.o jsonsl/jsonsl.o mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o mongoc/mongoc-bulk-operation.o mongoc/mongoc-client-pool.o mongoc/mongoc-client.o mongoc/mongoc-cluster.o mongoc/mongoc-collection.o mongoc/mongoc-counters.o mongoc/mongoc-cursor-array.o mongoc/mongoc-cursor.o mongoc/mongoc-database.o mongoc/mongoc-gridfs-file-list.o mongoc/mongoc-gridfs-file-page.o mongoc/mongoc-gridfs-file.o mongoc/mongoc-gridfs.o mongoc/mongoc-index.o mongoc/mongoc-stream-gridfs.o mongoc/mongoc-init.o mongoc/mongoc-list.o mongoc/mongoc-log.o mongoc/mongoc-rand-openssl.o mongoc/mongoc-read-prefs.o mongoc/mongoc-rpc.o mongoc/mongoc-sasl.o mongoc/mongoc-scram.o mongoc/mongoc-socket.o mongoc/mongoc-ssl.o mongoc/mongoc-stream-buffered.o	mongoc/mongoc-stream-socket.o mongoc/mongoc-stream-tls.o mongoc/mongoc-stream.o mongoc/mongoc-uri.o mongoc/mongoc-util.o mongoc/mongoc-write-command.o mongoc/mongoc-write-concern.o mongoc/mongoc-topology-description-apm.o mongoc/mongoc-async.o mongoc/mongoc-async-cmd.o mongoc/mongoc-host-list.o mongoc/mongoc-set.o mongoc/mongoc-server-description.o mongoc/mongoc-topology-description.o mongoc/mongoc-topology.o mongoc/mongoc-topology-scanner.o mongoc/mongoc-version-functions.o mongoc/mongoc-memcmp.o mongoc/mongoc-server-stream.o mongoc/mongoc-find-and-modify.o mongoc/mongoc-read-concern.o mongoc/mongoc-openssl.o mongoc/mongoc-apm.o mongoc/mongoc-crypto.o mongoc/mongoc-crypto-common-crypto.o mongoc/mongoc-crypto-openssl.o mongoc/mongoc-handshake.o mongoc/mongoc-stream-tls-openssl.o mongoc/mongoc-stream-tls-openssl-bio.o mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o mongoc/mongoc-change-stream.o mongoc/mongoc-client-session.o mongoc/mongoc-cluster-cyrus.o mongoc/mongoc-compression.o mongoc/mongoc-cyrus.o mongoc/mongoc-linux-distro-scanner.o mongoc/mongoc-stream-file.o mongoc/mcd-rpc.o mongoc/mongoc-deprioritized-servers.o mongoc/mongoc-opts.o mongoc/mongoc-opts-helpers.o mongoc/mongoc-cursor-cmd.o mongoc/mongoc-cursor-cmd-deprecated.o mongoc/mongoc-cursor-find.o mongoc/mongoc-cursor-find-cmd.o mongoc/mongoc-cursor-find-opquery.o mongoc/mongoc-cursor-legacy.o mongoc/mongoc-error.o mongoc/mongoc-aggregate.o mongoc/mongoc-client-side-encryption.o mongoc/mongoc-cursor-change-stream.o mongoc/mongoc-change-stream.o mongoc/mongoc-cluster-aws.o mongoc/mongoc-generation-map.o mongoc/mongoc-timeout.o mongoc/mongoc-server-monitor.o mongoc/mongoc-topology-background-monitoring.o common/common-thread.o mongoc/mongoc-optional.o mongoc/mongoc-server-api.o mongoc/mongoc-http.o mongoc/mongoc-ocsp-cache.o mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o utf8proc/utf8proc.o mongoc/mongoc-structured-log.o mongoc/mongoc-log-and-monitor-private.o common/common-oid.o common/common-json.o common/common-string.o kms/hexlify.o kms/kms_kv_list.o kms/kms_request.o kms/kms_response.o kms/kms_b64.o kms/kms_crypto_libcrypto.o kms/kms_decrypt_request.o kms/kms_message.o kms/kms_request_opt.o kms/kms_response_parser.o kms/kms_caller_identity_request.o kms/kms_encrypt_request.o kms/kms_request_str.o kms/sort.o
installing to /tmp/th798/16180359/R-release/1251/library/00LOCK-mongolite/00new/mongolite/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mongolite)
* installing *source* package 'brotli' ...
** package 'brotli' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrapper.c -o wrapper.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/backward_references.c -o enc/backward_references.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/bit_cost.c -o enc/bit_cost.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/block_splitter.c -o enc/block_splitter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/brotli_bit_stream.c -o enc/brotli_bit_stream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/cluster.c -o enc/cluster.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/compress_fragment_two_pass.c -o enc/compress_fragment_two_pass.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/compress_fragment.c -o enc/compress_fragment.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/encode.c -o enc/encode.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/entropy_encode.c -o enc/entropy_encode.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/histogram.c -o enc/histogram.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/literal_cost.c -o enc/literal_cost.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/memory.c -o enc/memory.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/metablock.c -o enc/metablock.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/static_dict.c -o enc/static_dict.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/utf8_util.c -o enc/utf8_util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dec/bit_reader.c -o dec/bit_reader.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dec/huffman.c -o dec/huffman.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dec/state.c -o dec/state.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dec/decode.c -o dec/decode.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/dictionary.c -o common/dictionary.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/backward_references_hq.c -o enc/backward_references_hq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/dictionary_hash.c -o enc/dictionary_hash.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/transform.c -o common/transform.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/encoder_dict.c -o enc/encoder_dict.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/platform.c -o common/platform.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/context.c -o common/context.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c common/constants.c -o common/constants.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/command.c -o enc/command.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c enc/fast_log.c -o enc/fast_log.o
ar rcs enc/libstatbrotli.a enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o brotli.so wrapper.o -Lenc -lstatbrotli
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tools/brotli.c -o tools/brotli.o
mkdir -p ../inst/bin
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -o ../inst/bin/bro tools/brotli.o -Lenc -lstatbrotli -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64
rm -f enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o ../inst/bin/bro enc/libstatbrotli.a tools/brotli.o
installing to /tmp/th798/16180359/R-release/1251/library/00LOCK-brotli/00new/brotli/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (brotli)
* installing *source* package 'RQuantLib' ...
** package 'RQuantLib' successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 accepts -g... (cached) yes
checking for /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 option to enable C++11 features... (cached) none needed
checking for R... yes
checking for quantlib-config... yes
checking for suitable QuantLib version... version 1.28 is not the most recent one. Consider upgrading.
checking for Boost development files... yes
checking for minimal Boost version... yes
configure: creating ./config.status
config.status: creating src/Makevars

RQuantlib 0.4.25 (using QuantLib 1.28)
======================================

cxxflags:   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include 
libs:       -L/home/th798/lib -L/home/th798/.conda/envs/emacs1/lib -lQuantLib

** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RcppExports.cpp -o RcppExports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c affine.cpp -o affine.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c asian.cpp -o asian.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c barrier_binary.cpp -o barrier_binary.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c bermudan.cpp -o bermudan.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c bonds.cpp -o bonds.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c calendars.cpp -o calendars.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c curves.cpp -o curves.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c dates.cpp -o dates.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c daycounter.cpp -o daycounter.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c discount.cpp -o discount.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c hullwhite.cpp -o hullwhite.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c implieds.cpp -o implieds.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c modules.cpp -o modules.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c sabr.cpp -o sabr.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c schedule.cpp -o schedule.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c utils.cpp -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c vanilla.cpp -o vanilla.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -I/home/th798/include -isystem /home/th798/.conda/envs/emacs1/include  -I../inst/include -I. -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zero.cpp -o zero.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o RQuantLib.so RcppExports.o affine.o asian.o barrier_binary.o bermudan.o bonds.o calendars.o curves.o dates.o daycounter.o discount.o hullwhite.o implieds.o modules.o sabr.o schedule.o utils.o vanilla.o zero.o -L/home/th798/lib -L/home/th798/.conda/envs/emacs1/lib -lQuantLib -fopenmp
installing to /tmp/th798/16180359/R-release/1251/library/00LOCK-RQuantLib/00new/RQuantLib/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RQuantLib)
* installing *source* package 'rtsdata' ...
** package 'rtsdata' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rtsdata)

The downloaded source packages are in
	'/tmp/th798/16180359/RtmpZLSQnQ/downloaded_packages'
> cat("Time to install revdep:\n")
Time to install revdep:
> print(install.time)
   user  system elapsed 
419.329  44.504 491.559 
> print(Sys.time())
[1] "2025-03-29 01:36:05 MST"
> downloaded_packages <- file.path(
+   tempdir(),
+   "downloaded_packages")
> dl.glob <- file.path(
+   downloaded_packages,
+   paste0(rev.dep,"_*.tar.gz"))
> rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob))
> colnames(rev.dep.dl.row) <- c("pkg","path")
> rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE)
> pkg.Rcheck <- paste0(rev.dep, ".Rcheck")
> 
> proj.dir <- "~/genomic-ml/data.table-revdeps"
> source(file.path(proj.dir, "myStatus.R"))
> Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]]))
> dir.create(Rvers, showWarnings=FALSE)
> Rcheck.list <- list()
> for(dt.version.short in c("release", "master")){
+   dt.tar.gz <- cargs[[dt.version.short]]
+   dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz)
+   print(Sys.time())
+   install.packages(dt.tar.gz, repos=NULL)
+   print(Sys.time())
+   check.cmd <- get_check_cmd(rev.dep.release.tar.gz)
+   system(check.cmd)
+   print(Sys.time())
+   dest.Rcheck <- file.path(
+     Rvers,
+     paste0(dt.version, ".Rcheck"))
+   unlink(dest.Rcheck, recursive=TRUE)
+   file.rename(pkg.Rcheck, dest.Rcheck)
+   Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log")
+ }
[1] "2025-03-29 01:36:05 MST"
Installing package into '/tmp/th798/16180359/R-release/1251/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** package 'data.table' successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16180359/R-release/1251/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-29 01:36:33 MST"
* using log directory '/tmp/th798/16180359/R-release/1251/rtsdata.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'rtsdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rtsdata' version '0.1.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'rtsdata' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

[1] "2025-03-29 01:37:02 MST"
[1] "2025-03-29 01:37:02 MST"
Installing package into '/tmp/th798/16180359/R-release/1251/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16180359/R-release/1251/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-29 01:37:30 MST"
* using log directory '/tmp/th798/16180359/R-release/1251/rtsdata.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'rtsdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rtsdata' version '0.1.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'rtsdata' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

[1] "2025-03-29 01:37:59 MST"
> system(paste(c("diff -u", Rcheck.list), collapse=" "))
> library(data.table, lib.loc=R.home("library"))
> (sig.diff.dt <- myDiff(Rvers))
Key: <checking>
Empty data.table (0 rows and 3 cols): checking,master,release
> 
> ## If there are significant differences, use git bisect to find when
> ## they started.
> if(nrow(sig.diff.dt)){
+   dt.git <- file.path(task.dir, "data.table.git")
+   system(paste("cd ~/R/data.table && git fetch --tags"))
+   system(paste("git clone ~/R/data.table", dt.git))
+   release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]])
+   rev.parse.cmd <- paste(
+     "cd", dt.git, "&& git rev-parse master")
+   master.sha <- system(rev.parse.cmd, intern=TRUE)
+   merge.base.cmd <- paste(
+     "cd", dt.git, "&& git merge-base master", release.tag)
+   merge.base.sha <- system(merge.base.cmd, intern=TRUE)
+   old.sha <- merge.base.sha
+   run_R <- file.path(proj.dir, "install_dt_then_check_dep.R")
+   sig.diff.dt[, first.bad.commit := NA_character_]
+   sig.diff.dt[, comments := NA_character_]
+   for(diff.i in 1:nrow(sig.diff.dt)){
+     sig.diff.row <- sig.diff.dt[diff.i]
+     bisect.cmd <- paste(
+       "cd", dt.git, "&&",
+       "git bisect start &&",
+       "git bisect old", old.sha, "&&",
+       "git bisect new master &&",
+       "git bisect run",
+       R.home('bin/Rscript'),
+       run_R,
+       shQuote(sig.diff.row$checking),
+       sig.diff.row$release,
+       rev.dep.release.tar.gz,
+       release.tag)
+     print(bisect.cmd)
+     bisect.out <- system(bisect.cmd, intern=TRUE)
+     cat(bisect.out,sep="\n")
+     if(is.null(attr(bisect.out,"status"))){
+       first.bad.sha <- nc::capture_all_str(
+         bisect.out,
+         sha="[0-9a-f]+",
+         " is the first new commit")$sha
+       parent.cmd <- paste(
+         "cd ~/R/data.table && git log --pretty=%P -n 1",
+         first.bad.sha)
+       parent.sha <- system(parent.cmd, intern=TRUE)
+       sig.diff.dt[diff.i, first.bad.commit := first.bad.sha]
+       parent.msg <- paste0("parent=", parent.sha)
+       this.comment <- if(parent.sha==old.sha){
+         paste(parent.msg, "same as git bisect old")
+       }else if(first.bad.sha==master.sha){
+         paste("same as git bisect new=master,", parent.msg)
+       }else{
+         parent.msg
+       }
+       sig.diff.dt[diff.i, comments := this.comment]
+     }
+   }
+   ## add CRAN column.
+   sig.diff.dt[, CRAN := {
+     flavor <- get_flavor(Rvers)
+     details <- data.table(flavor=unique(flavor))[, {
+       base <- "https://www.r-project.org/nosvn/R.check/"
+       u <- paste0(base, flavor, "/", rev.dep, "-00check.txt")
+       check.txt <- tempfile()
+       tryCatch({
+         download.file(u, check.txt, quiet=TRUE)
+       }, error=function(e){
+         NULL
+       })
+       check.lines <- if(file.exists(check.txt)){
+         readLines(check.txt,encoding="UTF-8")
+       }else{
+         ""
+       }
+       repl.lines <- gsub("[\u2018\u2019]", "'", check.lines)
+       ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C.
+       myStatus(line.vec=repl.lines)
+     }, by=flavor]
+     select.dt <- data.table(flavor, checking)
+     details[select.dt, msg, on=.(flavor, checking)]
+   }]
+   dir.create(file.path(job.dir, Rvers))
+   diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv")
+   data.table::fwrite(sig.diff.dt, diffs.csv)
+   print(sig.diff.dt)
+ }
>