Note: the module "R" cannot be unloaded because it was not loaded. WARNING: ignoring environment value of R_HOME R Under development (unstable) (2025-03-28 r88067) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-29/deps.csv", task.str = "1460", release = "/scratch/th798/data.table-revdeps/2025-03-29/data.table_release_1.17.0.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-03-29/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/16180762/R-devel/1460" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/16180762/R-devel/1460/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "textTinyR" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/16180762/R-devel/1460/library" [2] "/projects/genomic-ml/R/R-devel/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-03-29 01:25:50 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/16180762/R-devel/1460/library' (as 'lib' is unspecified) trying URL 'http://cloud.r-project.org/src/contrib/textTinyR_1.1.8.tar.gz' Content type 'application/x-gzip' length 919959 bytes (898 KB) ================================================== downloaded 898 KB * installing *source* package 'textTinyR' ... ** this is package 'textTinyR' version '1.1.8' ** package 'textTinyR' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -DARMA_64BIT_WORD -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -DARMA_64BIT_WORD -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c export_all_funcs.cpp -o export_all_funcs.o In file included from /projects/genomic-ml/R/R-devel/library/BH/include/boost/bind/mem_fn.hpp:25, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/mem_fn.hpp:22, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/function/detail/prologue.hpp:19, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/function.hpp:30, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/find_iterator.hpp:24, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/iter_find.hpp:27, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/split.hpp:16, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string.hpp:23, from export_all_funcs.cpp:11: /projects/genomic-ml/R/R-devel/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/memory:76, from /projects/genomic-ml/R/R-devel/library/RcppArmadillo/include/armadillo:38, from /projects/genomic-ml/R/R-devel/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from /projects/genomic-ml/R/R-devel/library/RcppArmadillo/include/RcppArmadillo.h:29, from export_all_funcs.cpp:1: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -DARMA_64BIT_WORD -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c porter2_stemmer.cpp -o porter2_stemmer.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -DARMA_64BIT_WORD -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rcpp_similarities.cpp -o rcpp_similarities.o In file included from /projects/genomic-ml/R/R-devel/library/BH/include/boost/bind/mem_fn.hpp:25, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/mem_fn.hpp:22, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/function/detail/prologue.hpp:19, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/function.hpp:30, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/find_iterator.hpp:24, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/iter_find.hpp:27, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/split.hpp:16, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string.hpp:23, from rcpp_similarities.cpp:13: /projects/genomic-ml/R/R-devel/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/memory:76, from /projects/genomic-ml/R/R-devel/library/RcppArmadillo/include/armadillo:38, from /projects/genomic-ml/R/R-devel/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from /projects/genomic-ml/R/R-devel/library/RcppArmadillo/include/RcppArmadillo.h:29, from rcpp_similarities.cpp:1: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -DARMA_64BIT_WORD -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c word_vecs_pointer_embedding.cpp -o word_vecs_pointer_embedding.o In file included from /projects/genomic-ml/R/R-devel/library/BH/include/boost/bind/mem_fn.hpp:25, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/mem_fn.hpp:22, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/function/detail/prologue.hpp:19, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/function.hpp:30, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/find_iterator.hpp:24, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/iter_find.hpp:27, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string/split.hpp:16, from /projects/genomic-ml/R/R-devel/library/BH/include/boost/algorithm/string.hpp:23, from word_vecs_pointer_embedding.cpp:18: /projects/genomic-ml/R/R-devel/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/memory:76, from /projects/genomic-ml/R/R-devel/library/RcppArmadillo/include/armadillo:38, from /projects/genomic-ml/R/R-devel/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58, from /projects/genomic-ml/R/R-devel/library/RcppArmadillo/include/RcppArmadillo.h:29, from word_vecs_pointer_embedding.cpp:1: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o textTinyR.so RcppExports.o export_all_funcs.o init.o porter2_stemmer.o rcpp_similarities.o word_vecs_pointer_embedding.o -L/home/th798/R/R-devel/lib -lRlapack -L/home/th798/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp installing to /tmp/th798/16180762/R-devel/1460/library/00LOCK-textTinyR/00new/textTinyR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (textTinyR) The downloaded source packages are in '/tmp/th798/16180762/RtmpZQWStM/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 38.159 2.242 46.331 > print(Sys.time()) [1] "2025-03-29 01:26:36 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-03-29 01:26:36 MST" Installing package into '/tmp/th798/16180762/R-devel/1460/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.0' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16180762/R-devel/1460/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-29 01:26:56 MST" * using log directory '/tmp/th798/16180762/R-devel/1460/textTinyR.Rcheck' * using R Under development (unstable) (2025-03-28 r88067) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'textTinyR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'textTinyR' version '1.1.8' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'textTinyR' can be installed ... OK * used C compiler: 'gcc (Spack GCC) 12.2.0' * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... INFO installed size is 6.2Mb sub-directories of 1Mb or more: libs 4.6Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(textTinyR) Loading required package: Matrix > > test_check("textTinyR") test-TEXT_DOC_DISSIM.R : test id 1 test-TEXT_DOC_DISSIM.R : test id 2 test-TEXT_DOC_DISSIM.R : test id 3 test-TEXT_DOC_DISSIM.R : test id 4 test-TEXT_DOC_DISSIM.R : test id 5 test-TEXT_DOC_DISSIM.R : test id 6 test-TEXT_DOC_DISSIM.R : test id 7 test-TEXT_DOC_DISSIM.R : test id 8 test-TEXT_DOC_DISSIM.R : test id 9 test-TEXT_DOC_DISSIM.R : test id 10 test-TEXT_DOC_DISSIM.R : test id 11 test-TEXT_DOC_DISSIM.R : test id 12 test-big_tokenize_transform.R : test id 13 test-big_tokenize_transform.R : test id 14 test-big_tokenize_transform.R : test id 15 test-big_tokenize_transform.R : test id 16 test-big_tokenize_transform.R : test id 17 test-big_tokenize_transform.R : test id 18 test-big_tokenize_transform.R : test id 19 test-big_tokenize_transform.R : test id 20 test-big_tokenize_transform.R : test id 21 test-big_tokenize_transform.R : test id 22 test-big_tokenize_transform.R : test id 23 test-big_tokenize_transform.R : test id 24 test-big_tokenize_transform.R : test id 25 test-big_tokenize_transform.R : test id 26 test-big_tokenize_transform.R : test id 27 test-big_tokenize_transform.R : test id 28 test-big_tokenize_transform.R : test id 29 test-big_tokenize_transform.R : test id 30 test-big_tokenize_transform.R : test id 31 test-big_tokenize_transform.R : test id 32 test-big_tokenize_transform.R : test id 33 test-big_tokenize_transform.R : test id 34 test-big_tokenize_transform.R : test id 35 test-big_tokenize_transform.R : test id 36 test-big_tokenize_transform.R : test id 37 test-big_tokenize_transform.R : test id 38 test-big_tokenize_transform.R : test id 39 test-big_tokenize_transform.R : test id 40 test-big_tokenize_transform.R : test id 41 test-big_tokenize_transform.R : test id 42 test-big_tokenize_transform.R : test id 43 test-big_tokenize_transform.R : test id 44 test-big_tokenize_transform.R : test id 45 test-big_tokenize_transform.R : test id 46 test-big_tokenize_transform.R : test id 47 test-big_tokenize_transform.R : test id 48 test-big_tokenize_transform.R : test id 49 test-big_tokenize_transform.R : test id 50 test-big_tokenize_transform.R : test id 51 test-big_tokenize_transform.R : test id 52 test-big_tokenize_transform.R : test id 53 test-big_tokenize_transform.R : test id 54 test-big_tokenize_transform.R : test id 55 test-big_tokenize_transform.R : test id 56 test-big_tokenize_transform.R : test id 57 test-big_tokenize_transform.R : test id 58 test-big_tokenize_transform.R : test id 59 test-big_tokenize_transform.R : test id 60 test-big_tokenize_transform.R : test id 61 test-big_tokenize_transform.R : test id 62 test-big_tokenize_transform.R : test id 63 test-big_tokenize_transform.R : test id 64 test-big_tokenize_transform.R : test id 65 test-big_tokenize_transform.R : test id 66 test-big_tokenize_transform.R : test id 67 test-big_tokenize_transform.R : test id 68 test-big_tokenize_transform.R : test id 69 test-big_tokenize_transform.R : test id 70 test-big_tokenize_transform.R : test id 71 test-big_tokenize_transform.R : test id 72 test-big_tokenize_transform.R : test id 73 test-big_tokenize_transform.R : test id 74 test-big_tokenize_transform.R : test id 75 test-big_tokenize_transform.R : test id 76 test-big_tokenize_transform.R : test id 77 test-big_tokenize_transform.R : test id 78 test-big_tokenize_transform.R : test id 79 test-big_tokenize_transform.R : test id 80 test-big_tokenize_transform.R : test id 81 test-big_tokenize_transform.R : test id 82 test-big_tokenize_transform.R : test id 83 test-big_tokenize_transform.R : test id 84 test-big_tokenize_transform.R : test id 85 test-big_tokenize_transform.R : test id 86 test-big_tokenize_transform.R : test id 87 test-cluster_frequency.R : test id 88 test-cluster_frequency.R : test id 89 test-cosine.R : test id 90 test-cosine.R : test id 91 test-cosine.R : test id 92 test-cosine.R : test id 93 test-cosine.R : test id 94 test-cosine.R : test id 95 test-count_rows.R : test id 96 test-count_rows.R : test id 97 test-count_rows.R : test id 98 test-dims.R : test id 99 test-dims.R : test id 100 test-dims.R : test id 101 test-doc2vec.R : test id 102 test-doc2vec.R : test id 103 test-doc2vec.R : test id 104 test-doc2vec.R : test id 105 test-doc2vec.R : test id 106 test-doc2vec.R : test id 107 test-doc2vec.R : test id 108 test-doc2vec.R : test id 109 test-doc2vec.R : test id 110 test-doc2vec.R : test id 111 test-doc2vec.R : test id 112 test-doc2vec.R : test id 113 test-doc2vec.R : test id 114 test-doc2vec.R : test id 115 test-doc2vec.R : test id 116 test-jaccard_dice.R : test id 117 test-jaccard_dice.R : test id 118 test-jaccard_dice.R : test id 119 test-jaccard_dice.R : test id 120 test-jaccard_dice.R : test id 121 test-jaccard_dice.R : test id 122 test-jaccard_dice.R : test id 123 test-jaccard_dice.R : test id 124 test-select_predictors.R : test id 125 test-select_predictors.R : test id 126 test-select_predictors.R : test id 127 test-select_predictors.R : test id 128 test-select_predictors.R : test id 129 test-select_predictors.R : test id 130 test-sparse_functions_AND_read_text.R : test id 131 test-sparse_functions_AND_read_text.R : test id 132 test-sparse_functions_AND_read_text.R : test id 133 test-sparse_functions_AND_read_text.R : test id 134 test-sparse_functions_AND_read_text.R : test id 135 test-sparse_functions_AND_read_text.R : test id 136 test-sparse_functions_AND_read_text.R : test id 137 test-sparse_functions_AND_read_text.R : test id 138 test-sparse_functions_AND_read_text.R : test id 139 test-sparse_functions_AND_read_text.R : test id 140 test-sparse_functions_AND_read_text.R : test id 141 test-sparse_functions_AND_read_text.R : test id 142 test-sparse_functions_AND_read_text.R : test id 143 test-sparse_functions_AND_read_text.R : test id 144 test-sparse_functions_AND_read_text.R : test id 145 test-sparse_functions_AND_read_text.R : test id 146 test-sparse_functions_AND_read_text.R : test id 147 test-sparse_functions_AND_read_text.R : test id 148 test-sparse_functions_AND_read_text.R : test id 149 test-sparse_functions_AND_read_text.R : test id 150 test-sparse_functions_AND_read_text.R : test id 151 test-sparse_functions_AND_read_text.R : test id 152 test-sparse_functions_AND_read_text.R : test id 153 test-sparse_functions_AND_read_text.R : test id 154 test-sparse_functions_AND_read_text.R : test id 155 test-sparse_functions_AND_read_text.R : test id 156 test-sparse_functions_AND_read_text.R : test id 157 test-sparse_functions_AND_read_text.R : test id 158 test-sparse_functions_AND_read_text.R : test id 159 test-term_matrix_triplet_data_global_term_weights.R : test id 160 test-term_matrix_triplet_data_global_term_weights.R : test id 161 test-term_matrix_triplet_data_global_term_weights.R : test id 162 test-term_matrix_triplet_data_global_term_weights.R : test id 163 test-term_matrix_triplet_data_global_term_weights.R : test id 164 test-term_matrix_triplet_data_global_term_weights.R : test id 165 test-term_matrix_triplet_data_global_term_weights.R : test id 166 test-term_matrix_triplet_data_global_term_weights.R : test id 167 test-term_matrix_triplet_data_global_term_weights.R : test id 168 test-term_matrix_triplet_data_global_term_weights.R : test id 169 test-term_matrix_triplet_data_global_term_weights.R : test id 170 test-term_matrix_triplet_data_global_term_weights.R : test id 171 test-term_matrix_triplet_data_global_term_weights.R : test id 172 test-term_matrix_triplet_data_global_term_weights.R : test id 173 test-term_matrix_triplet_data_global_term_weights.R : test id 174 test-term_matrix_triplet_data_global_term_weights.R : test id 175 test-term_matrix_triplet_data_global_term_weights.R : test id 176 test-term_matrix_triplet_data_global_term_weights.R : test id 177 test-term_matrix_triplet_data_global_term_weights.R : test id 178 test-term_matrix_triplet_data_global_term_weights.R : test id 179 test-term_matrix_triplet_data_global_term_weights.R : test id 180 test-term_matrix_triplet_data_global_term_weights.R : test id 181 test-term_matrix_triplet_data_global_term_weights.R : test id 182 test-term_matrix_triplet_data_global_term_weights.R : test id 183 test-term_matrix_triplet_data_global_term_weights.R : test id 184 test-term_matrix_triplet_data_global_term_weights.R : test id 185 test-term_matrix_triplet_data_global_term_weights.R : test id 186 test-term_matrix_triplet_data_global_term_weights.R : test id 187 test-term_matrix_triplet_data_global_term_weights.R : test id 188 test-term_matrix_triplet_data_global_term_weights.R : test id 189 test-term_matrix_triplet_data_global_term_weights.R : test id 190 test-term_matrix_triplet_data_global_term_weights.R : test id 191 test-term_matrix_triplet_data_global_term_weights.R : test id 192 test-term_matrix_triplet_data_global_term_weights.R : test id 193 test-term_matrix_triplet_data_global_term_weights.R : test id 194 test-term_matrix_triplet_data_global_term_weights.R : test id 195 test-term_matrix_triplet_data_global_term_weights.R : test id 196 test-term_matrix_triplet_data_global_term_weights.R : test id 197 test-term_matrix_triplet_data_global_term_weights.R : test id 198 test-term_matrix_triplet_data_global_term_weights.R : test id 199 test-term_matrix_triplet_data_global_term_weights.R : test id 200 test-term_matrix_triplet_data_global_term_weights.R : test id 201 test-term_matrix_triplet_data_global_term_weights.R : test id 202 test-term_matrix_triplet_data_global_term_weights.R : test id 203 test-term_matrix_triplet_data_global_term_weights.R : test id 204 test-term_matrix_triplet_data_global_term_weights.R : test id 205 test-term_matrix_triplet_data_global_term_weights.R : test id 206 test-term_matrix_triplet_data_global_term_weights.R : test id 207 test-term_matrix_triplet_data_global_term_weights.R : test id 208 test-term_matrix_triplet_data_global_term_weights.R : test id 209 test-term_matrix_triplet_data_global_term_weights.R : test id 210 test-term_matrix_triplet_data_global_term_weights.R : test id 211 test-term_matrix_triplet_data_global_term_weights.R : test id 212 test-term_matrix_triplet_data_global_term_weights.R : test id 213 test-term_matrix_triplet_data_global_term_weights.R : test id 214 test-term_matrix_triplet_data_global_term_weights.R : test id 215 test-term_matrix_triplet_data_global_term_weights.R : test id 216 test-term_matrix_triplet_data_global_term_weights.R : test id 217 test-term_matrix_triplet_data_global_term_weights.R : test id 218 test-term_matrix_triplet_data_global_term_weights.R : test id 219 test-term_matrix_triplet_data_global_term_weights.R : test id 220 test-term_matrix_triplet_data_global_term_weights.R : test id 221 test-term_matrix_triplet_data_global_term_weights.R : test id 222 test-term_matrix_triplet_data_global_term_weights.R : test id 223 test-term_matrix_triplet_data_global_term_weights.R : test id 224 test-term_matrix_triplet_data_global_term_weights.R : test id 225 test-term_matrix_triplet_data_global_term_weights.R : test id 226 test-term_matrix_triplet_data_global_term_weights.R : test id 227 test-term_matrix_triplet_data_global_term_weights.R : test id 228 test-term_matrix_triplet_data_global_term_weights.R : test id 229 test-text_intersect.R : test id 230 test-text_intersect.R : test id 231 test-text_intersect.R : test id 232 test-text_intersect.R : test id 233 test-text_intersect.R : test id 234 test-text_intersect.R : test id 235 test-text_intersect.R : test id 236 test-text_intersect.R : test id 237 test-text_intersect.R : test id 238 test-text_intersect.R : test id 239 test-text_intersect.R : test id 240 test-text_intersect.R : test id 241 test-text_intersect.R : test id 242 test-text_intersect.R : test id 243 test-text_intersect.R : test id 244 test-token_statistics.R : test id 245 test-token_statistics.R : test id 246 test-token_statistics.R : test id 247 test-token_statistics.R : test id 248 test-token_statistics.R : test id 249 test-token_statistics.R : test id 250 test-token_statistics.R : test id 251 test-token_statistics.R : test id 252 test-token_statistics.R : test id 253 test-token_statistics.R : test id 254 test-token_statistics.R : test id 255 test-token_statistics.R : test id 256 test-token_statistics.R : test id 257 test-token_statistics.R : test id 258 test-token_statistics.R : test id 259 test-token_statistics.R : test id 260 test-token_statistics.R : test id 261 test-token_statistics.R : test id 262 test-token_statistics.R : test id 263 test-token_statistics.R : test id 264 test-token_statistics.R : test id 265 test-token_statistics.R : test id 266 test-token_statistics.R : test id 267 test-token_statistics.R : test id 268 test-token_statistics.R : test id 269 test-token_statistics.R : test id 270 test-token_statistics.R : test id 271 test-token_statistics.R : test id 272 test-token_statistics.R : test id 273 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: test id 458 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 459 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 460 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 461 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 462 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 463 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 464 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 465 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 466 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 467 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 468 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 469 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 470 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 471 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 472 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 473 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 474 [ FAIL 14 | WARN 614 | SKIP 0 | PASS 460 ] == Failed tests ================================================================ -- Failure ('test-utf_locale.R:206:9'): the function returns a vector of words if : the language is greek, the utf_locale is el_GR.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:377:9'): the function returns a vector of words if : the language is russian, the utf_locale is ru_RU.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:433:9'): the function returns a vector of words if : the language is bulgarian, the utf_locale is bg_BG.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:582:9'): the function returns a vector of words if : the language is arabic, the utf_locale is ar_SA.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:630:9'): the function returns a vector of words if : the language is armenian, the utf_locale is tr_TR.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:723:9'): the function returns a vector of words if : the language is bengali, the utf_locale is bn_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1013:9'): the function returns a vector of words if : the language is estonian, the utf_locale is et_EE.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1207:9'): the function returns a vector of words if : the language is hebrew, the utf_locale is he_IL.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1253:9'): the function returns a vector of words if : the language is hindi, the utf_locale is hi_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1299:9'): the function returns a vector of words if : the language is hungarian, the utf_locale is hu.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1395:9'): the function returns a vector of words if : the language is irish, the utf_locale is ga_IE.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1542:9'): the function returns a vector of words if : the language is marathi, the utf_locale is mr_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1640:9'): the function returns a vector of words if : the language is persian, the utf_locale is fa_IR.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1977:9'): the function returns a vector of words if : the language is spanish, the utf_locale is es_ES.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 14 | WARN 614 | SKIP 0 | PASS 460 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR See '/tmp/th798/16180762/R-devel/1460/textTinyR.Rcheck/00check.log' for details. [1] "2025-03-29 01:30:08 MST" [1] "2025-03-29 01:30:08 MST" Installing package into '/tmp/th798/16180762/R-devel/1460/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.99' ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16180762/R-devel/1460/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-29 01:30:27 MST" * using log directory '/tmp/th798/16180762/R-devel/1460/textTinyR.Rcheck' * using R Under development (unstable) (2025-03-28 r88067) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'textTinyR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'textTinyR' version '1.1.8' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'textTinyR' can be installed ... OK * used C compiler: 'gcc (Spack GCC) 12.2.0' * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... INFO installed size is 6.2Mb sub-directories of 1Mb or more: libs 4.6Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(textTinyR) Loading required package: Matrix > > test_check("textTinyR") test-TEXT_DOC_DISSIM.R : test id 1 test-TEXT_DOC_DISSIM.R : test id 2 test-TEXT_DOC_DISSIM.R : test id 3 test-TEXT_DOC_DISSIM.R : test id 4 test-TEXT_DOC_DISSIM.R : test id 5 test-TEXT_DOC_DISSIM.R : test id 6 test-TEXT_DOC_DISSIM.R : test id 7 test-TEXT_DOC_DISSIM.R : test id 8 test-TEXT_DOC_DISSIM.R : test id 9 test-TEXT_DOC_DISSIM.R : test id 10 test-TEXT_DOC_DISSIM.R : test id 11 test-TEXT_DOC_DISSIM.R : test id 12 test-big_tokenize_transform.R : test id 13 test-big_tokenize_transform.R : test id 14 test-big_tokenize_transform.R : test id 15 test-big_tokenize_transform.R : test id 16 test-big_tokenize_transform.R : test id 17 test-big_tokenize_transform.R : test id 18 test-big_tokenize_transform.R : test id 19 test-big_tokenize_transform.R : test id 20 test-big_tokenize_transform.R : test id 21 test-big_tokenize_transform.R : test id 22 test-big_tokenize_transform.R : test id 23 test-big_tokenize_transform.R : test id 24 test-big_tokenize_transform.R : test id 25 test-big_tokenize_transform.R : test id 26 test-big_tokenize_transform.R : test id 27 test-big_tokenize_transform.R : test id 28 test-big_tokenize_transform.R : test id 29 test-big_tokenize_transform.R : test id 30 test-big_tokenize_transform.R : test id 31 test-big_tokenize_transform.R : test id 32 test-big_tokenize_transform.R : test id 33 test-big_tokenize_transform.R : test id 34 test-big_tokenize_transform.R : test id 35 test-big_tokenize_transform.R : test id 36 test-big_tokenize_transform.R : test id 37 test-big_tokenize_transform.R : test id 38 test-big_tokenize_transform.R : test id 39 test-big_tokenize_transform.R : test id 40 test-big_tokenize_transform.R : test id 41 test-big_tokenize_transform.R : test id 42 test-big_tokenize_transform.R : test id 43 test-big_tokenize_transform.R : test id 44 test-big_tokenize_transform.R : test id 45 test-big_tokenize_transform.R : test id 46 test-big_tokenize_transform.R : test id 47 test-big_tokenize_transform.R : test id 48 test-big_tokenize_transform.R : test id 49 test-big_tokenize_transform.R : test id 50 test-big_tokenize_transform.R : test id 51 test-big_tokenize_transform.R : test id 52 test-big_tokenize_transform.R : test id 53 test-big_tokenize_transform.R : test id 54 test-big_tokenize_transform.R : test id 55 test-big_tokenize_transform.R : test id 56 test-big_tokenize_transform.R : test id 57 test-big_tokenize_transform.R : test id 58 test-big_tokenize_transform.R : test id 59 test-big_tokenize_transform.R : test id 60 test-big_tokenize_transform.R : test id 61 test-big_tokenize_transform.R : test id 62 test-big_tokenize_transform.R : test id 63 test-big_tokenize_transform.R : test id 64 test-big_tokenize_transform.R : test id 65 test-big_tokenize_transform.R : test id 66 test-big_tokenize_transform.R : test id 67 test-big_tokenize_transform.R : test id 68 test-big_tokenize_transform.R : test id 69 test-big_tokenize_transform.R : test id 70 test-big_tokenize_transform.R : test id 71 test-big_tokenize_transform.R : test id 72 test-big_tokenize_transform.R : test id 73 test-big_tokenize_transform.R : test id 74 test-big_tokenize_transform.R : test id 75 test-big_tokenize_transform.R : test id 76 test-big_tokenize_transform.R : test id 77 test-big_tokenize_transform.R : test id 78 test-big_tokenize_transform.R : test id 79 test-big_tokenize_transform.R : test id 80 test-big_tokenize_transform.R : test id 81 test-big_tokenize_transform.R : test id 82 test-big_tokenize_transform.R : test id 83 test-big_tokenize_transform.R : test id 84 test-big_tokenize_transform.R : test id 85 test-big_tokenize_transform.R : test id 86 test-big_tokenize_transform.R : test id 87 test-cluster_frequency.R : test id 88 test-cluster_frequency.R : test id 89 test-cosine.R : test id 90 test-cosine.R : test id 91 test-cosine.R : test id 92 test-cosine.R : test id 93 test-cosine.R : test id 94 test-cosine.R : test id 95 test-count_rows.R : test id 96 test-count_rows.R : test id 97 test-count_rows.R : test id 98 test-dims.R : test id 99 test-dims.R : test id 100 test-dims.R : test id 101 test-doc2vec.R : test id 102 test-doc2vec.R : test id 103 test-doc2vec.R : test id 104 test-doc2vec.R : test id 105 test-doc2vec.R : test id 106 test-doc2vec.R : test id 107 test-doc2vec.R : test id 108 test-doc2vec.R : test id 109 test-doc2vec.R : test id 110 test-doc2vec.R : test id 111 test-doc2vec.R : test id 112 test-doc2vec.R : test id 113 test-doc2vec.R : test id 114 test-doc2vec.R : test id 115 test-doc2vec.R : test id 116 test-jaccard_dice.R : test id 117 test-jaccard_dice.R : test id 118 test-jaccard_dice.R : test id 119 test-jaccard_dice.R : test id 120 test-jaccard_dice.R : test id 121 test-jaccard_dice.R : test id 122 test-jaccard_dice.R : test id 123 test-jaccard_dice.R : test id 124 test-select_predictors.R : test id 125 test-select_predictors.R : test id 126 test-select_predictors.R : test id 127 test-select_predictors.R : test id 128 test-select_predictors.R : test id 129 test-select_predictors.R : test id 130 test-sparse_functions_AND_read_text.R : test id 131 test-sparse_functions_AND_read_text.R : test id 132 test-sparse_functions_AND_read_text.R : test id 133 test-sparse_functions_AND_read_text.R : test id 134 test-sparse_functions_AND_read_text.R : test id 135 test-sparse_functions_AND_read_text.R : test id 136 test-sparse_functions_AND_read_text.R : test id 137 test-sparse_functions_AND_read_text.R : test id 138 test-sparse_functions_AND_read_text.R : test id 139 test-sparse_functions_AND_read_text.R : test id 140 test-sparse_functions_AND_read_text.R : test id 141 test-sparse_functions_AND_read_text.R : test id 142 test-sparse_functions_AND_read_text.R : test id 143 test-sparse_functions_AND_read_text.R : test id 144 test-sparse_functions_AND_read_text.R : test id 145 test-sparse_functions_AND_read_text.R : test id 146 test-sparse_functions_AND_read_text.R : test id 147 test-sparse_functions_AND_read_text.R : test id 148 test-sparse_functions_AND_read_text.R : test id 149 test-sparse_functions_AND_read_text.R : test id 150 test-sparse_functions_AND_read_text.R : test id 151 test-sparse_functions_AND_read_text.R : test id 152 test-sparse_functions_AND_read_text.R : test id 153 test-sparse_functions_AND_read_text.R : test id 154 test-sparse_functions_AND_read_text.R : test id 155 test-sparse_functions_AND_read_text.R : test id 156 test-sparse_functions_AND_read_text.R : test id 157 test-sparse_functions_AND_read_text.R : test id 158 test-sparse_functions_AND_read_text.R : test id 159 test-term_matrix_triplet_data_global_term_weights.R : test id 160 test-term_matrix_triplet_data_global_term_weights.R : test id 161 test-term_matrix_triplet_data_global_term_weights.R : test id 162 test-term_matrix_triplet_data_global_term_weights.R : test id 163 test-term_matrix_triplet_data_global_term_weights.R : test id 164 test-term_matrix_triplet_data_global_term_weights.R : test id 165 test-term_matrix_triplet_data_global_term_weights.R : test id 166 test-term_matrix_triplet_data_global_term_weights.R : test id 167 test-term_matrix_triplet_data_global_term_weights.R : test id 168 test-term_matrix_triplet_data_global_term_weights.R : test id 169 test-term_matrix_triplet_data_global_term_weights.R : test id 170 test-term_matrix_triplet_data_global_term_weights.R : test id 171 test-term_matrix_triplet_data_global_term_weights.R : test id 172 test-term_matrix_triplet_data_global_term_weights.R : test id 173 test-term_matrix_triplet_data_global_term_weights.R : test id 174 test-term_matrix_triplet_data_global_term_weights.R : test id 175 test-term_matrix_triplet_data_global_term_weights.R : test id 176 test-term_matrix_triplet_data_global_term_weights.R : test id 177 test-term_matrix_triplet_data_global_term_weights.R : test id 178 test-term_matrix_triplet_data_global_term_weights.R : test id 179 test-term_matrix_triplet_data_global_term_weights.R : test id 180 test-term_matrix_triplet_data_global_term_weights.R : test id 181 test-term_matrix_triplet_data_global_term_weights.R : test id 182 test-term_matrix_triplet_data_global_term_weights.R : test id 183 test-term_matrix_triplet_data_global_term_weights.R : test id 184 test-term_matrix_triplet_data_global_term_weights.R : test id 185 test-term_matrix_triplet_data_global_term_weights.R : test id 186 test-term_matrix_triplet_data_global_term_weights.R : test id 187 test-term_matrix_triplet_data_global_term_weights.R : test id 188 test-term_matrix_triplet_data_global_term_weights.R : test id 189 test-term_matrix_triplet_data_global_term_weights.R : test id 190 test-term_matrix_triplet_data_global_term_weights.R : test id 191 test-term_matrix_triplet_data_global_term_weights.R : test id 192 test-term_matrix_triplet_data_global_term_weights.R : test id 193 test-term_matrix_triplet_data_global_term_weights.R : test id 194 test-term_matrix_triplet_data_global_term_weights.R : test id 195 test-term_matrix_triplet_data_global_term_weights.R : test id 196 test-term_matrix_triplet_data_global_term_weights.R : test id 197 test-term_matrix_triplet_data_global_term_weights.R : test id 198 test-term_matrix_triplet_data_global_term_weights.R : test id 199 test-term_matrix_triplet_data_global_term_weights.R : test id 200 test-term_matrix_triplet_data_global_term_weights.R : test id 201 test-term_matrix_triplet_data_global_term_weights.R : test id 202 test-term_matrix_triplet_data_global_term_weights.R : test id 203 test-term_matrix_triplet_data_global_term_weights.R : test id 204 test-term_matrix_triplet_data_global_term_weights.R : test id 205 test-term_matrix_triplet_data_global_term_weights.R : test id 206 test-term_matrix_triplet_data_global_term_weights.R : test id 207 test-term_matrix_triplet_data_global_term_weights.R : test id 208 test-term_matrix_triplet_data_global_term_weights.R : test id 209 test-term_matrix_triplet_data_global_term_weights.R : test id 210 test-term_matrix_triplet_data_global_term_weights.R : test id 211 test-term_matrix_triplet_data_global_term_weights.R : test id 212 test-term_matrix_triplet_data_global_term_weights.R : test id 213 test-term_matrix_triplet_data_global_term_weights.R : test id 214 test-term_matrix_triplet_data_global_term_weights.R : test id 215 test-term_matrix_triplet_data_global_term_weights.R : test id 216 test-term_matrix_triplet_data_global_term_weights.R : test id 217 test-term_matrix_triplet_data_global_term_weights.R : test id 218 test-term_matrix_triplet_data_global_term_weights.R : test id 219 test-term_matrix_triplet_data_global_term_weights.R : test id 220 test-term_matrix_triplet_data_global_term_weights.R : test id 221 test-term_matrix_triplet_data_global_term_weights.R : test id 222 test-term_matrix_triplet_data_global_term_weights.R : test id 223 test-term_matrix_triplet_data_global_term_weights.R : test id 224 test-term_matrix_triplet_data_global_term_weights.R : test id 225 test-term_matrix_triplet_data_global_term_weights.R : test id 226 test-term_matrix_triplet_data_global_term_weights.R : test id 227 test-term_matrix_triplet_data_global_term_weights.R : test id 228 test-term_matrix_triplet_data_global_term_weights.R : test id 229 test-text_intersect.R : test id 230 test-text_intersect.R : test id 231 test-text_intersect.R : test id 232 test-text_intersect.R : test id 233 test-text_intersect.R : test id 234 test-text_intersect.R : test id 235 test-text_intersect.R : test id 236 test-text_intersect.R : test id 237 test-text_intersect.R : test id 238 test-text_intersect.R : test id 239 test-text_intersect.R : test id 240 test-text_intersect.R : test id 241 test-text_intersect.R : test id 242 test-text_intersect.R : test id 243 test-text_intersect.R : test id 244 test-token_statistics.R : test id 245 test-token_statistics.R : test id 246 test-token_statistics.R : test id 247 test-token_statistics.R : test id 248 test-token_statistics.R : test id 249 test-token_statistics.R : test id 250 test-token_statistics.R : test id 251 test-token_statistics.R : test id 252 test-token_statistics.R : test id 253 test-token_statistics.R : test id 254 test-token_statistics.R : test id 255 test-token_statistics.R : test id 256 test-token_statistics.R : test id 257 test-token_statistics.R : test id 258 test-token_statistics.R : test id 259 test-token_statistics.R : test id 260 test-token_statistics.R : test id 261 test-token_statistics.R : test id 262 test-token_statistics.R : test id 263 test-token_statistics.R : test id 264 test-token_statistics.R : test id 265 test-token_statistics.R : test id 266 test-token_statistics.R : test id 267 test-token_statistics.R : test id 268 test-token_statistics.R : test id 269 test-token_statistics.R : test id 270 test-token_statistics.R : test id 271 test-token_statistics.R : test id 272 test-token_statistics.R : test id 273 test-token_statistics.R : test id 274 test-token_statistics.R : test id 275 test-token_statistics.R : test id 276 test-token_statistics.R : test id 277 test-token_statistics.R : test id 278 test-token_statistics.R : test id 279 test-token_statistics.R : test id 280 test-token_statistics.R : test id 281 test-token_statistics.R : test id 282 test-token_statistics.R : test id 283 test-token_statistics.R : test id 284 test-token_statistics.R : test id 285 test-token_statistics.R : test id 286 test-token_statistics.R : test id 287 test-tokenization_transformation.R : test id 288 test-tokenization_transformation.R : test id 289 test-tokenization_transformation.R : test id 290 test-tokenization_transformation.R : test id 291 test-tokenization_transformation.R : test id 292 test-tokenization_transformation.R : test id 293 test-tokenization_transformation.R : test id 294 test-tokenization_transformation.R : test id 295 test-tokenization_transformation.R : test id 296 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id 336 test-tokenization_transformation_vec_documents.R : test id 337 test-tokenization_transformation_vec_documents.R : test id 338 test-tokenization_transformation_vec_documents.R : test id 339 test-tokenization_transformation_vec_documents.R : test id 340 test-tokenization_transformation_vec_documents.R : test id 341 test-tokenization_transformation_vec_documents.R : test id 342 test-tokenization_transformation_vec_documents.R : test id 343 test-tokenization_transformation_vec_documents.R : test id 344 test-tokenization_transformation_vec_documents.R : test id 345 test-tokenization_transformation_vec_documents.R : test id 346 test-tokenization_transformation_vec_documents.R : test id 347 test-tokenization_transformation_vec_documents.R : test id 348 test-tokenization_transformation_vec_documents.R : test id 349 test-tokenization_transformation_vec_documents.R : test id 350 test-tokenization_transformation_vec_documents.R : test id 351 test-tokenization_transformation_vec_documents.R 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: test id 458 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 459 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 460 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 461 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 462 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 463 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 464 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 465 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 466 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 467 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 468 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 469 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 470 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 471 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 472 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 473 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 474 [ FAIL 14 | WARN 614 | SKIP 0 | PASS 460 ] == Failed tests ================================================================ -- Failure ('test-utf_locale.R:206:9'): the function returns a vector of words if : the language is greek, the utf_locale is el_GR.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:377:9'): the function returns a vector of words if : the language is russian, the utf_locale is ru_RU.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:433:9'): the function returns a vector of words if : the language is bulgarian, the utf_locale is bg_BG.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:582:9'): the function returns a vector of words if : the language is arabic, the utf_locale is ar_SA.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:630:9'): the function returns a vector of words if : the language is armenian, the utf_locale is tr_TR.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:723:9'): the function returns a vector of words if : the language is bengali, the utf_locale is bn_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1013:9'): the function returns a vector of words if : the language is estonian, the utf_locale is et_EE.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1207:9'): the function returns a vector of words if : the language is hebrew, the utf_locale is he_IL.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1253:9'): the function returns a vector of words if : the language is hindi, the utf_locale is hi_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1299:9'): the function returns a vector of words if : the language is hungarian, the utf_locale is hu.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1395:9'): the function returns a vector of words if : the language is irish, the utf_locale is ga_IE.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1542:9'): the function returns a vector of words if : the language is marathi, the utf_locale is mr_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1640:9'): the function returns a vector of words if : the language is persian, the utf_locale is fa_IR.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1977:9'): the function returns a vector of words if : the language is spanish, the utf_locale is es_ES.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 14 | WARN 614 | SKIP 0 | PASS 460 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR See '/tmp/th798/16180762/R-devel/1460/textTinyR.Rcheck/00check.log' for details. [1] "2025-03-29 01:33:18 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: Empty data.table (0 rows and 3 cols): checking,master,release > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } > WARNING: ignoring environment value of R_HOME R version 4.4.3 (2025-02-28) -- "Trophy Case" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-29/deps.csv", task.str = "1460", release = "/scratch/th798/data.table-revdeps/2025-03-29/data.table_release_1.17.0.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-03-29/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/16180762/R-release/1460" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/16180762/R-release/1460/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "textTinyR" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/16180762/R-release/1460/library" [2] "/projects/genomic-ml/R/R-release/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-03-29 01:33:24 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/16180762/R-release/1460/library' (as 'lib' is unspecified) trying URL 'http://cloud.r-project.org/src/contrib/textTinyR_1.1.8.tar.gz' Content type 'application/x-gzip' length 919959 bytes (898 KB) ================================================== downloaded 898 KB * installing *source* package 'textTinyR' ... ** package 'textTinyR' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-release/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -DARMA_64BIT_WORD -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-release/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -DARMA_64BIT_WORD -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c export_all_funcs.cpp -o export_all_funcs.o In file included from /projects/genomic-ml/R/R-release/library/BH/include/boost/bind/mem_fn.hpp:25, from /projects/genomic-ml/R/R-release/library/BH/include/boost/mem_fn.hpp:22, from /projects/genomic-ml/R/R-release/library/BH/include/boost/function/detail/prologue.hpp:19, from /projects/genomic-ml/R/R-release/library/BH/include/boost/function.hpp:30, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/find_iterator.hpp:24, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/iter_find.hpp:27, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/split.hpp:16, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string.hpp:23, from export_all_funcs.cpp:11: /projects/genomic-ml/R/R-release/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/memory:76, from /projects/genomic-ml/R/R-release/library/BH/include/boost/function/function_base.hpp:34, from /projects/genomic-ml/R/R-release/library/BH/include/boost/function/detail/prologue.hpp:18: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-release/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-release/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -DARMA_64BIT_WORD -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c porter2_stemmer.cpp -o porter2_stemmer.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-release/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -DARMA_64BIT_WORD -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rcpp_similarities.cpp -o rcpp_similarities.o In file included from /projects/genomic-ml/R/R-release/library/BH/include/boost/bind/mem_fn.hpp:25, from /projects/genomic-ml/R/R-release/library/BH/include/boost/mem_fn.hpp:22, from /projects/genomic-ml/R/R-release/library/BH/include/boost/function/detail/prologue.hpp:19, from /projects/genomic-ml/R/R-release/library/BH/include/boost/function.hpp:30, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/find_iterator.hpp:24, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/iter_find.hpp:27, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/split.hpp:16, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string.hpp:23, from rcpp_similarities.cpp:13: /projects/genomic-ml/R/R-release/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/memory:76, from /projects/genomic-ml/R/R-release/library/BH/include/boost/function/function_base.hpp:34, from /projects/genomic-ml/R/R-release/library/BH/include/boost/function/detail/prologue.hpp:18: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I../inst/include/ -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-release/library/BH/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -DARMA_64BIT_WORD -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c word_vecs_pointer_embedding.cpp -o word_vecs_pointer_embedding.o In file included from /projects/genomic-ml/R/R-release/library/BH/include/boost/bind/mem_fn.hpp:25, from /projects/genomic-ml/R/R-release/library/BH/include/boost/mem_fn.hpp:22, from /projects/genomic-ml/R/R-release/library/BH/include/boost/function/detail/prologue.hpp:19, from /projects/genomic-ml/R/R-release/library/BH/include/boost/function.hpp:30, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/find_iterator.hpp:24, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/iter_find.hpp:27, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string/split.hpp:16, from /projects/genomic-ml/R/R-release/library/BH/include/boost/algorithm/string.hpp:23, from word_vecs_pointer_embedding.cpp:18: /projects/genomic-ml/R/R-release/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/memory:76, from word_vecs_pointer_embedding.cpp:11: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o textTinyR.so RcppExports.o export_all_funcs.o init.o porter2_stemmer.o rcpp_similarities.o word_vecs_pointer_embedding.o -L/home/th798/R/R-release/lib -lRlapack -L/home/th798/R/R-release/lib -lRblas -lgfortran -lm -lquadmath -fopenmp installing to /tmp/th798/16180762/R-release/1460/library/00LOCK-textTinyR/00new/textTinyR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (textTinyR) The downloaded source packages are in '/tmp/th798/16180762/Rtmph0CzCQ/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 41.031 2.563 45.479 > print(Sys.time()) [1] "2025-03-29 01:34:09 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-03-29 01:34:09 MST" Installing package into '/tmp/th798/16180762/R-release/1460/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16180762/R-release/1460/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-29 01:34:27 MST" * using log directory '/tmp/th798/16180762/R-release/1460/textTinyR.Rcheck' * using R version 4.4.3 (2025-02-28) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'textTinyR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'textTinyR' version '1.1.8' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'textTinyR' can be installed ... OK * used C compiler: 'gcc (Spack GCC) 12.2.0' * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: libs 4.6Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(textTinyR) Loading required package: Matrix > > test_check("textTinyR") test-TEXT_DOC_DISSIM.R : test id 1 test-TEXT_DOC_DISSIM.R : test id 2 test-TEXT_DOC_DISSIM.R : test id 3 test-TEXT_DOC_DISSIM.R : test id 4 test-TEXT_DOC_DISSIM.R : test id 5 test-TEXT_DOC_DISSIM.R : test id 6 test-TEXT_DOC_DISSIM.R : test id 7 test-TEXT_DOC_DISSIM.R : test id 8 test-TEXT_DOC_DISSIM.R : test id 9 test-TEXT_DOC_DISSIM.R : test id 10 test-TEXT_DOC_DISSIM.R : test id 11 test-TEXT_DOC_DISSIM.R : test id 12 test-big_tokenize_transform.R : test id 13 test-big_tokenize_transform.R : test id 14 test-big_tokenize_transform.R : test id 15 test-big_tokenize_transform.R : test id 16 test-big_tokenize_transform.R : test id 17 test-big_tokenize_transform.R : test id 18 test-big_tokenize_transform.R : test id 19 test-big_tokenize_transform.R : test id 20 test-big_tokenize_transform.R : test id 21 test-big_tokenize_transform.R : test id 22 test-big_tokenize_transform.R : test id 23 test-big_tokenize_transform.R : test id 24 test-big_tokenize_transform.R : test id 25 test-big_tokenize_transform.R : test id 26 test-big_tokenize_transform.R : test id 27 test-big_tokenize_transform.R : test id 28 test-big_tokenize_transform.R : test id 29 test-big_tokenize_transform.R : test id 30 test-big_tokenize_transform.R : test id 31 test-big_tokenize_transform.R : test id 32 test-big_tokenize_transform.R : test id 33 test-big_tokenize_transform.R : test id 34 test-big_tokenize_transform.R : test id 35 test-big_tokenize_transform.R : test id 36 test-big_tokenize_transform.R : test id 37 test-big_tokenize_transform.R : test id 38 test-big_tokenize_transform.R : test id 39 test-big_tokenize_transform.R : test id 40 test-big_tokenize_transform.R : test id 41 test-big_tokenize_transform.R : test id 42 test-big_tokenize_transform.R : test id 43 test-big_tokenize_transform.R : test id 44 test-big_tokenize_transform.R : test id 45 test-big_tokenize_transform.R : test id 46 test-big_tokenize_transform.R : test id 47 test-big_tokenize_transform.R : test id 48 test-big_tokenize_transform.R : test id 49 test-big_tokenize_transform.R : test id 50 test-big_tokenize_transform.R : test id 51 test-big_tokenize_transform.R : test id 52 test-big_tokenize_transform.R : test id 53 test-big_tokenize_transform.R : test id 54 test-big_tokenize_transform.R : test id 55 test-big_tokenize_transform.R : test id 56 test-big_tokenize_transform.R : test id 57 test-big_tokenize_transform.R : test id 58 test-big_tokenize_transform.R : test id 59 test-big_tokenize_transform.R : test id 60 test-big_tokenize_transform.R : test id 61 test-big_tokenize_transform.R : test id 62 test-big_tokenize_transform.R : test id 63 test-big_tokenize_transform.R : test id 64 test-big_tokenize_transform.R : test id 65 test-big_tokenize_transform.R : test id 66 test-big_tokenize_transform.R : test id 67 test-big_tokenize_transform.R : test id 68 test-big_tokenize_transform.R : test id 69 test-big_tokenize_transform.R : test id 70 test-big_tokenize_transform.R : test id 71 test-big_tokenize_transform.R : test id 72 test-big_tokenize_transform.R : test id 73 test-big_tokenize_transform.R : test id 74 test-big_tokenize_transform.R : test id 75 test-big_tokenize_transform.R : test id 76 test-big_tokenize_transform.R : test id 77 test-big_tokenize_transform.R : test id 78 test-big_tokenize_transform.R : test id 79 test-big_tokenize_transform.R : test id 80 test-big_tokenize_transform.R : test id 81 test-big_tokenize_transform.R : test id 82 test-big_tokenize_transform.R : test id 83 test-big_tokenize_transform.R : test id 84 test-big_tokenize_transform.R : test id 85 test-big_tokenize_transform.R : test id 86 test-big_tokenize_transform.R : test id 87 test-cluster_frequency.R : test id 88 test-cluster_frequency.R : test id 89 test-cosine.R : test id 90 test-cosine.R : test id 91 test-cosine.R : test id 92 test-cosine.R : test id 93 test-cosine.R : test id 94 test-cosine.R : test id 95 test-count_rows.R : test id 96 test-count_rows.R : test id 97 test-count_rows.R : test id 98 test-dims.R : test id 99 test-dims.R : test id 100 test-dims.R : test id 101 test-doc2vec.R : test id 102 test-doc2vec.R : test id 103 test-doc2vec.R : test id 104 test-doc2vec.R : test id 105 test-doc2vec.R : test id 106 test-doc2vec.R : test id 107 test-doc2vec.R : test id 108 test-doc2vec.R : test id 109 test-doc2vec.R : test id 110 test-doc2vec.R : test id 111 test-doc2vec.R : test id 112 test-doc2vec.R : test id 113 test-doc2vec.R : test id 114 test-doc2vec.R : test id 115 test-doc2vec.R : test id 116 test-jaccard_dice.R : test id 117 test-jaccard_dice.R : test id 118 test-jaccard_dice.R : test id 119 test-jaccard_dice.R : test id 120 test-jaccard_dice.R : test id 121 test-jaccard_dice.R : test id 122 test-jaccard_dice.R : test id 123 test-jaccard_dice.R : test id 124 test-select_predictors.R : test id 125 test-select_predictors.R : test id 126 test-select_predictors.R : test id 127 test-select_predictors.R : test id 128 test-select_predictors.R : test id 129 test-select_predictors.R : test id 130 test-sparse_functions_AND_read_text.R : test id 131 test-sparse_functions_AND_read_text.R : test id 132 test-sparse_functions_AND_read_text.R : test id 133 test-sparse_functions_AND_read_text.R : test id 134 test-sparse_functions_AND_read_text.R : test id 135 test-sparse_functions_AND_read_text.R : test id 136 test-sparse_functions_AND_read_text.R : test id 137 test-sparse_functions_AND_read_text.R : test id 138 test-sparse_functions_AND_read_text.R : test id 139 test-sparse_functions_AND_read_text.R : test id 140 test-sparse_functions_AND_read_text.R : test id 141 test-sparse_functions_AND_read_text.R : test id 142 test-sparse_functions_AND_read_text.R : test id 143 test-sparse_functions_AND_read_text.R : test id 144 test-sparse_functions_AND_read_text.R : test id 145 test-sparse_functions_AND_read_text.R : test id 146 test-sparse_functions_AND_read_text.R : test id 147 test-sparse_functions_AND_read_text.R : test id 148 test-sparse_functions_AND_read_text.R : test id 149 test-sparse_functions_AND_read_text.R : test id 150 test-sparse_functions_AND_read_text.R : test id 151 test-sparse_functions_AND_read_text.R : test id 152 test-sparse_functions_AND_read_text.R : test id 153 test-sparse_functions_AND_read_text.R : test id 154 test-sparse_functions_AND_read_text.R : test id 155 test-sparse_functions_AND_read_text.R : test id 156 test-sparse_functions_AND_read_text.R : test id 157 test-sparse_functions_AND_read_text.R : test id 158 test-sparse_functions_AND_read_text.R : test id 159 test-term_matrix_triplet_data_global_term_weights.R : test id 160 test-term_matrix_triplet_data_global_term_weights.R : test id 161 test-term_matrix_triplet_data_global_term_weights.R : test id 162 test-term_matrix_triplet_data_global_term_weights.R : test id 163 test-term_matrix_triplet_data_global_term_weights.R : test id 164 test-term_matrix_triplet_data_global_term_weights.R : test id 165 test-term_matrix_triplet_data_global_term_weights.R : test id 166 test-term_matrix_triplet_data_global_term_weights.R : test id 167 test-term_matrix_triplet_data_global_term_weights.R : test id 168 test-term_matrix_triplet_data_global_term_weights.R : test id 169 test-term_matrix_triplet_data_global_term_weights.R : test id 170 test-term_matrix_triplet_data_global_term_weights.R : test id 171 test-term_matrix_triplet_data_global_term_weights.R : test id 172 test-term_matrix_triplet_data_global_term_weights.R : test id 173 test-term_matrix_triplet_data_global_term_weights.R : test id 174 test-term_matrix_triplet_data_global_term_weights.R : test id 175 test-term_matrix_triplet_data_global_term_weights.R : test id 176 test-term_matrix_triplet_data_global_term_weights.R : test id 177 test-term_matrix_triplet_data_global_term_weights.R : test id 178 test-term_matrix_triplet_data_global_term_weights.R : test id 179 test-term_matrix_triplet_data_global_term_weights.R : test id 180 test-term_matrix_triplet_data_global_term_weights.R : test id 181 test-term_matrix_triplet_data_global_term_weights.R : test id 182 test-term_matrix_triplet_data_global_term_weights.R : test id 183 test-term_matrix_triplet_data_global_term_weights.R : test id 184 test-term_matrix_triplet_data_global_term_weights.R : test id 185 test-term_matrix_triplet_data_global_term_weights.R : test id 186 test-term_matrix_triplet_data_global_term_weights.R : test id 187 test-term_matrix_triplet_data_global_term_weights.R : test id 188 test-term_matrix_triplet_data_global_term_weights.R : test id 189 test-term_matrix_triplet_data_global_term_weights.R : test id 190 test-term_matrix_triplet_data_global_term_weights.R : test id 191 test-term_matrix_triplet_data_global_term_weights.R : test id 192 test-term_matrix_triplet_data_global_term_weights.R : test id 193 test-term_matrix_triplet_data_global_term_weights.R : test id 194 test-term_matrix_triplet_data_global_term_weights.R : test id 195 test-term_matrix_triplet_data_global_term_weights.R : test id 196 test-term_matrix_triplet_data_global_term_weights.R : test id 197 test-term_matrix_triplet_data_global_term_weights.R : test id 198 test-term_matrix_triplet_data_global_term_weights.R : test id 199 test-term_matrix_triplet_data_global_term_weights.R : test id 200 test-term_matrix_triplet_data_global_term_weights.R : test id 201 test-term_matrix_triplet_data_global_term_weights.R : test id 202 test-term_matrix_triplet_data_global_term_weights.R : test id 203 test-term_matrix_triplet_data_global_term_weights.R : test id 204 test-term_matrix_triplet_data_global_term_weights.R : test id 205 test-term_matrix_triplet_data_global_term_weights.R : test id 206 test-term_matrix_triplet_data_global_term_weights.R : test id 207 test-term_matrix_triplet_data_global_term_weights.R : test id 208 test-term_matrix_triplet_data_global_term_weights.R : test id 209 test-term_matrix_triplet_data_global_term_weights.R : test id 210 test-term_matrix_triplet_data_global_term_weights.R : test id 211 test-term_matrix_triplet_data_global_term_weights.R : test id 212 test-term_matrix_triplet_data_global_term_weights.R : test id 213 test-term_matrix_triplet_data_global_term_weights.R : test id 214 test-term_matrix_triplet_data_global_term_weights.R : test id 215 test-term_matrix_triplet_data_global_term_weights.R : test id 216 test-term_matrix_triplet_data_global_term_weights.R : test id 217 test-term_matrix_triplet_data_global_term_weights.R : test id 218 test-term_matrix_triplet_data_global_term_weights.R : test id 219 test-term_matrix_triplet_data_global_term_weights.R : test id 220 test-term_matrix_triplet_data_global_term_weights.R : test id 221 test-term_matrix_triplet_data_global_term_weights.R : test id 222 test-term_matrix_triplet_data_global_term_weights.R : test id 223 test-term_matrix_triplet_data_global_term_weights.R : test id 224 test-term_matrix_triplet_data_global_term_weights.R : test id 225 test-term_matrix_triplet_data_global_term_weights.R : test id 226 test-term_matrix_triplet_data_global_term_weights.R : test id 227 test-term_matrix_triplet_data_global_term_weights.R : test id 228 test-term_matrix_triplet_data_global_term_weights.R : test id 229 test-text_intersect.R : test id 230 test-text_intersect.R : test id 231 test-text_intersect.R : test id 232 test-text_intersect.R : test id 233 test-text_intersect.R : test id 234 test-text_intersect.R : test id 235 test-text_intersect.R : test id 236 test-text_intersect.R : test id 237 test-text_intersect.R : test id 238 test-text_intersect.R : test id 239 test-text_intersect.R : test id 240 test-text_intersect.R : test id 241 test-text_intersect.R : test id 242 test-text_intersect.R : test id 243 test-text_intersect.R : test id 244 test-token_statistics.R : test id 245 test-token_statistics.R : test id 246 test-token_statistics.R : test id 247 test-token_statistics.R : test id 248 test-token_statistics.R : test id 249 test-token_statistics.R : test id 250 test-token_statistics.R : test id 251 test-token_statistics.R : test id 252 test-token_statistics.R : test id 253 test-token_statistics.R : test id 254 test-token_statistics.R : test id 255 test-token_statistics.R : test id 256 test-token_statistics.R : test id 257 test-token_statistics.R : test id 258 test-token_statistics.R : test id 259 test-token_statistics.R : test id 260 test-token_statistics.R : test id 261 test-token_statistics.R : test id 262 test-token_statistics.R : test id 263 test-token_statistics.R : test id 264 test-token_statistics.R : test id 265 test-token_statistics.R : test id 266 test-token_statistics.R : test id 267 test-token_statistics.R : test id 268 test-token_statistics.R : test id 269 test-token_statistics.R : test id 270 test-token_statistics.R : test id 271 test-token_statistics.R : test id 272 test-token_statistics.R : test id 273 test-token_statistics.R : test id 274 test-token_statistics.R : test id 275 test-token_statistics.R : test id 276 test-token_statistics.R : test id 277 test-token_statistics.R : test id 278 test-token_statistics.R : test id 279 test-token_statistics.R : test id 280 test-token_statistics.R : test id 281 test-token_statistics.R : test id 282 test-token_statistics.R : test id 283 test-token_statistics.R : test id 284 test-token_statistics.R : test id 285 test-token_statistics.R : test id 286 test-token_statistics.R : test id 287 test-tokenization_transformation.R : test id 288 test-tokenization_transformation.R : test id 289 test-tokenization_transformation.R : test id 290 test-tokenization_transformation.R : test id 291 test-tokenization_transformation.R : test id 292 test-tokenization_transformation.R : test id 293 test-tokenization_transformation.R : test id 294 test-tokenization_transformation.R : test id 295 test-tokenization_transformation.R : test id 296 test-tokenization_transformation.R : test id 297 test-tokenization_transformation.R : test id 298 test-tokenization_transformation.R : test id 299 test-tokenization_transformation.R : test id 300 test-tokenization_transformation.R : test id 301 test-tokenization_transformation.R : test id 302 test-tokenization_transformation.R : test id 303 test-tokenization_transformation.R : test id 304 test-tokenization_transformation.R : test id 305 test-tokenization_transformation.R : test id 306 test-tokenization_transformation.R : test id 307 test-tokenization_transformation.R : test id 308 test-tokenization_transformation.R : test id 309 test-tokenization_transformation.R : test id 310 test-tokenization_transformation.R : test id 311 test-tokenization_transformation.R : test id 312 test-tokenization_transformation.R : test id 313 test-tokenization_transformation.R : test id 314 test-tokenization_transformation.R : test id 315 test-tokenization_transformation.R : test id 316 test-tokenization_transformation.R : test id 317 test-tokenization_transformation.R : test id 318 test-tokenization_transformation.R : test id 319 test-tokenization_transformation.R : test id 320 test-tokenization_transformation.R : test id 321 test-tokenization_transformation.R : test id 322 test-tokenization_transformation.R : test id 323 test-tokenization_transformation.R : test id 324 test-tokenization_transformation.R : test id 325 test-tokenization_transformation.R : test id 326 test-tokenization_transformation.R : test id 327 test-tokenization_transformation.R : test id 328 test-tokenization_transformation.R : test id 329 test-tokenization_transformation.R : test id 330 test-tokenization_transformation.R : test id 331 test-tokenization_transformation.R : test id 332 test-tokenization_transformation.R : test id 333 test-tokenization_transformation.R : test id 334 test-tokenization_transformation_vec_documents.R : test id 335 test-tokenization_transformation_vec_documents.R : test id 336 test-tokenization_transformation_vec_documents.R : test id 337 test-tokenization_transformation_vec_documents.R : test id 338 test-tokenization_transformation_vec_documents.R : test id 339 test-tokenization_transformation_vec_documents.R : test id 340 test-tokenization_transformation_vec_documents.R : test id 341 test-tokenization_transformation_vec_documents.R : test id 342 test-tokenization_transformation_vec_documents.R : test id 343 test-tokenization_transformation_vec_documents.R : test id 344 test-tokenization_transformation_vec_documents.R : test id 345 test-tokenization_transformation_vec_documents.R : test id 346 test-tokenization_transformation_vec_documents.R : test id 347 test-tokenization_transformation_vec_documents.R : test id 348 test-tokenization_transformation_vec_documents.R : test id 349 test-tokenization_transformation_vec_documents.R : test id 350 test-tokenization_transformation_vec_documents.R : test id 351 test-tokenization_transformation_vec_documents.R : test id 352 test-tokenization_transformation_vec_documents.R : test id 353 test-tokenization_transformation_vec_documents.R : test id 354 test-tokenization_transformation_vec_documents.R : test id 355 test-tokenization_transformation_vec_documents.R : test id 356 test-tokenization_transformation_vec_documents.R : test id 357 test-tokenization_transformation_vec_documents.R : test id 358 test-tokenization_transformation_vec_documents.R : test id 359 test-tokenization_transformation_vec_documents.R : test id 360 test-tokenization_transformation_vec_documents.R : test id 361 test-tokenization_transformation_vec_documents.R : test id 362 test-tokenization_transformation_vec_documents.R : test id 363 test-tokenization_transformation_vec_documents.R : test id 364 test-tokenization_transformation_vec_documents.R : test id 365 test-tokenization_transformation_vec_documents.R : test id 366 test-tokenization_transformation_vec_documents.R : test id 367 test-tokenization_transformation_vec_documents.R : test id 368 test-tokenization_transformation_vec_documents.R : test id 369 test-tokenization_transformation_vec_documents.R : test id 370 test-tokenization_transformation_vec_documents.R : test id 371 test-tokenization_transformation_vec_documents.R : test id 372 test-tokenization_transformation_vec_documents.R : test id 373 test-utf_locale.R : test id 374 test-utf_locale.R : test id 375 test-utf_locale.R : test id 376 test-utf_locale.R : test id 377 test-utf_locale.R : test id 378 test-utf_locale.R : test id 379 test-utf_locale.R : test id 380 test-utf_locale.R : test id 381 test-utf_locale.R : test id 382 test-utf_locale.R : test id 383 test-utf_locale.R : test id 384 test-utf_locale.R : test id 385 test-utf_locale.R : test id 386 test-utf_locale.R : test id 387 test-utf_locale.R : test id 388 test-utf_locale.R : test id 389 test-utf_locale.R : test id 390 test-utf_locale.R : test id 391 test-utf_locale.R : test id 392 test-utf_locale.R : test id 393 test-utf_locale.R : test id 394 test-utf_locale.R : test id 395 test-utf_locale.R : test id 396 test-utf_locale.R : test id 397 test-utf_locale.R : test id 398 test-utf_locale.R : test id 399 test-utf_locale.R : test id 400 test-utf_locale.R : test id 401 test-utf_locale.R : test id 402 test-utf_locale.R : test id 403 test-utf_locale.R : test id 404 test-utf_locale.R : test id 405 test-utf_locale.R : test id 406 test-utf_locale.R : test id 407 test-utf_locale.R : test id 408 test-utf_locale.R : test id 409 test-utf_locale.R : test id 410 test-utf_locale.R : test id 411 test-utf_locale.R : test id 412 test-utf_locale.R : test id 413 test-utf_locale.R : test id 414 test-utf_locale.R : test id 415 test-utf_locale.R : test id 416 test-utf_locale.R : test id 417 test-utf_locale.R : test id 418 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 419 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 420 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 421 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 422 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 423 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 424 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 425 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 426 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 427 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 428 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 429 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 430 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 431 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 432 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 433 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 434 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 435 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 436 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 437 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 438 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 439 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 440 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 441 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 442 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 443 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 444 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 445 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 446 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 447 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 448 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 449 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 450 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 451 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 452 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 453 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 454 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 455 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 456 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 457 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 458 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 459 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 460 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 461 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 462 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 463 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 464 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 465 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 466 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 467 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 468 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 469 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 470 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 471 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 472 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 473 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 474 [ FAIL 14 | WARN 614 | SKIP 0 | PASS 460 ] == Failed tests ================================================================ -- Failure ('test-utf_locale.R:206:9'): the function returns a vector of words if : the language is greek, the utf_locale is el_GR.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:377:9'): the function returns a vector of words if : the language is russian, the utf_locale is ru_RU.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:433:9'): the function returns a vector of words if : the language is bulgarian, the utf_locale is bg_BG.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:582:9'): the function returns a vector of words if : the language is arabic, the utf_locale is ar_SA.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:630:9'): the function returns a vector of words if : the language is armenian, the utf_locale is tr_TR.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:723:9'): the function returns a vector of words if : the language is bengali, the utf_locale is bn_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1013:9'): the function returns a vector of words if : the language is estonian, the utf_locale is et_EE.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1207:9'): the function returns a vector of words if : the language is hebrew, the utf_locale is he_IL.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1253:9'): the function returns a vector of words if : the language is hindi, the utf_locale is hi_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1299:9'): the function returns a vector of words if : the language is hungarian, the utf_locale is hu.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1395:9'): the function returns a vector of words if : the language is irish, the utf_locale is ga_IE.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1542:9'): the function returns a vector of words if : the language is marathi, the utf_locale is mr_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1640:9'): the function returns a vector of words if : the language is persian, the utf_locale is fa_IR.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1977:9'): the function returns a vector of words if : the language is spanish, the utf_locale is es_ES.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 14 | WARN 614 | SKIP 0 | PASS 460 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE See '/tmp/th798/16180762/R-release/1460/textTinyR.Rcheck/00check.log' for details. [1] "2025-03-29 01:37:18 MST" [1] "2025-03-29 01:37:18 MST" Installing package into '/tmp/th798/16180762/R-release/1460/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16180762/R-release/1460/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-29 01:37:36 MST" * using log directory '/tmp/th798/16180762/R-release/1460/textTinyR.Rcheck' * using R version 4.4.3 (2025-02-28) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'textTinyR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'textTinyR' version '1.1.8' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'textTinyR' can be installed ... OK * used C compiler: 'gcc (Spack GCC) 12.2.0' * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... NOTE installed size is 6.2Mb sub-directories of 1Mb or more: libs 4.6Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(textTinyR) Loading required package: Matrix > > test_check("textTinyR") test-TEXT_DOC_DISSIM.R : test id 1 test-TEXT_DOC_DISSIM.R : test id 2 test-TEXT_DOC_DISSIM.R : test id 3 test-TEXT_DOC_DISSIM.R : test id 4 test-TEXT_DOC_DISSIM.R : test id 5 test-TEXT_DOC_DISSIM.R : test id 6 test-TEXT_DOC_DISSIM.R : test id 7 test-TEXT_DOC_DISSIM.R : test id 8 test-TEXT_DOC_DISSIM.R : test id 9 test-TEXT_DOC_DISSIM.R : test id 10 test-TEXT_DOC_DISSIM.R : test id 11 test-TEXT_DOC_DISSIM.R : test id 12 test-big_tokenize_transform.R : test id 13 test-big_tokenize_transform.R : test id 14 test-big_tokenize_transform.R : test id 15 test-big_tokenize_transform.R : test id 16 test-big_tokenize_transform.R : test id 17 test-big_tokenize_transform.R : test id 18 test-big_tokenize_transform.R : test id 19 test-big_tokenize_transform.R : test id 20 test-big_tokenize_transform.R : test id 21 test-big_tokenize_transform.R : test id 22 test-big_tokenize_transform.R : test id 23 test-big_tokenize_transform.R : test id 24 test-big_tokenize_transform.R : test id 25 test-big_tokenize_transform.R : test id 26 test-big_tokenize_transform.R : test id 27 test-big_tokenize_transform.R : test id 28 test-big_tokenize_transform.R : test id 29 test-big_tokenize_transform.R : test id 30 test-big_tokenize_transform.R : test id 31 test-big_tokenize_transform.R : test id 32 test-big_tokenize_transform.R : test id 33 test-big_tokenize_transform.R : test id 34 test-big_tokenize_transform.R : test id 35 test-big_tokenize_transform.R : test id 36 test-big_tokenize_transform.R : test id 37 test-big_tokenize_transform.R : test id 38 test-big_tokenize_transform.R : test id 39 test-big_tokenize_transform.R : test id 40 test-big_tokenize_transform.R : test id 41 test-big_tokenize_transform.R : test id 42 test-big_tokenize_transform.R : test id 43 test-big_tokenize_transform.R : test id 44 test-big_tokenize_transform.R : test id 45 test-big_tokenize_transform.R : test id 46 test-big_tokenize_transform.R : test id 47 test-big_tokenize_transform.R : test id 48 test-big_tokenize_transform.R : test id 49 test-big_tokenize_transform.R : test id 50 test-big_tokenize_transform.R : test id 51 test-big_tokenize_transform.R : test id 52 test-big_tokenize_transform.R : test id 53 test-big_tokenize_transform.R : test id 54 test-big_tokenize_transform.R : test id 55 test-big_tokenize_transform.R : test id 56 test-big_tokenize_transform.R : test id 57 test-big_tokenize_transform.R : test id 58 test-big_tokenize_transform.R : test id 59 test-big_tokenize_transform.R : test id 60 test-big_tokenize_transform.R : test id 61 test-big_tokenize_transform.R : test id 62 test-big_tokenize_transform.R : test id 63 test-big_tokenize_transform.R : test id 64 test-big_tokenize_transform.R : test id 65 test-big_tokenize_transform.R : test id 66 test-big_tokenize_transform.R : test id 67 test-big_tokenize_transform.R : test id 68 test-big_tokenize_transform.R : test id 69 test-big_tokenize_transform.R : test id 70 test-big_tokenize_transform.R : test id 71 test-big_tokenize_transform.R : test id 72 test-big_tokenize_transform.R : test id 73 test-big_tokenize_transform.R : test id 74 test-big_tokenize_transform.R : test id 75 test-big_tokenize_transform.R : test id 76 test-big_tokenize_transform.R : test id 77 test-big_tokenize_transform.R : test id 78 test-big_tokenize_transform.R : test id 79 test-big_tokenize_transform.R : test id 80 test-big_tokenize_transform.R : test id 81 test-big_tokenize_transform.R : test id 82 test-big_tokenize_transform.R : test id 83 test-big_tokenize_transform.R : test id 84 test-big_tokenize_transform.R : test id 85 test-big_tokenize_transform.R : test id 86 test-big_tokenize_transform.R : test id 87 test-cluster_frequency.R : test id 88 test-cluster_frequency.R : test id 89 test-cosine.R : test id 90 test-cosine.R : test id 91 test-cosine.R : test id 92 test-cosine.R : test id 93 test-cosine.R : test id 94 test-cosine.R : test id 95 test-count_rows.R : test id 96 test-count_rows.R : test id 97 test-count_rows.R : test id 98 test-dims.R : test id 99 test-dims.R : test id 100 test-dims.R : test id 101 test-doc2vec.R : test id 102 test-doc2vec.R : test id 103 test-doc2vec.R : test id 104 test-doc2vec.R : test id 105 test-doc2vec.R : test id 106 test-doc2vec.R : test id 107 test-doc2vec.R : test id 108 test-doc2vec.R : test id 109 test-doc2vec.R : test id 110 test-doc2vec.R : test id 111 test-doc2vec.R : test id 112 test-doc2vec.R : test id 113 test-doc2vec.R : test id 114 test-doc2vec.R : test id 115 test-doc2vec.R : test id 116 test-jaccard_dice.R : test id 117 test-jaccard_dice.R : test id 118 test-jaccard_dice.R : test id 119 test-jaccard_dice.R : test id 120 test-jaccard_dice.R : test id 121 test-jaccard_dice.R : test id 122 test-jaccard_dice.R : test id 123 test-jaccard_dice.R : test id 124 test-select_predictors.R : test id 125 test-select_predictors.R : 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id 164 test-term_matrix_triplet_data_global_term_weights.R : test id 165 test-term_matrix_triplet_data_global_term_weights.R : test id 166 test-term_matrix_triplet_data_global_term_weights.R : test id 167 test-term_matrix_triplet_data_global_term_weights.R : test id 168 test-term_matrix_triplet_data_global_term_weights.R : test id 169 test-term_matrix_triplet_data_global_term_weights.R : test id 170 test-term_matrix_triplet_data_global_term_weights.R : test id 171 test-term_matrix_triplet_data_global_term_weights.R : test id 172 test-term_matrix_triplet_data_global_term_weights.R : test id 173 test-term_matrix_triplet_data_global_term_weights.R : test id 174 test-term_matrix_triplet_data_global_term_weights.R : test id 175 test-term_matrix_triplet_data_global_term_weights.R : test id 176 test-term_matrix_triplet_data_global_term_weights.R : test id 177 test-term_matrix_triplet_data_global_term_weights.R : test id 178 test-term_matrix_triplet_data_global_term_weights.R : test id 179 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id 336 test-tokenization_transformation_vec_documents.R : test id 337 test-tokenization_transformation_vec_documents.R : test id 338 test-tokenization_transformation_vec_documents.R : test id 339 test-tokenization_transformation_vec_documents.R : test id 340 test-tokenization_transformation_vec_documents.R : test id 341 test-tokenization_transformation_vec_documents.R : test id 342 test-tokenization_transformation_vec_documents.R : test id 343 test-tokenization_transformation_vec_documents.R : test id 344 test-tokenization_transformation_vec_documents.R : test id 345 test-tokenization_transformation_vec_documents.R : test id 346 test-tokenization_transformation_vec_documents.R : test id 347 test-tokenization_transformation_vec_documents.R : test id 348 test-tokenization_transformation_vec_documents.R : test id 349 test-tokenization_transformation_vec_documents.R : test id 350 test-tokenization_transformation_vec_documents.R : test id 351 test-tokenization_transformation_vec_documents.R 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: test id 433 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 434 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 435 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 436 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 437 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 438 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 439 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 440 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 441 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 442 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 443 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 444 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 445 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: test id 458 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 459 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 460 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 461 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 462 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 463 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 464 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 465 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 466 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 467 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 468 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 469 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 470 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 471 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 472 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 473 test-vocab_file_parser_bytes_converter_dice_levenstein_cosine.R : test id 474 [ FAIL 14 | WARN 614 | SKIP 0 | PASS 460 ] == Failed tests ================================================================ -- Failure ('test-utf_locale.R:206:9'): the function returns a vector of words if : the language is greek, the utf_locale is el_GR.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:377:9'): the function returns a vector of words if : the language is russian, the utf_locale is ru_RU.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:433:9'): the function returns a vector of words if : the language is bulgarian, the utf_locale is bg_BG.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:582:9'): the function returns a vector of words if : the language is arabic, the utf_locale is ar_SA.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:630:9'): the function returns a vector of words if : the language is armenian, the utf_locale is tr_TR.UTF_8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:723:9'): the function returns a vector of words if : the language is bengali, the utf_locale is bn_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1013:9'): the function returns a vector of words if : the language is estonian, the utf_locale is et_EE.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1207:9'): the function returns a vector of words if : the language is hebrew, the utf_locale is he_IL.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1253:9'): the function returns a vector of words if : the language is hindi, the utf_locale is hi_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1299:9'): the function returns a vector of words if : the language is hungarian, the utf_locale is hu.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1395:9'): the function returns a vector of words if : the language is irish, the utf_locale is ga_IE.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1542:9'): the function returns a vector of words if : the language is marathi, the utf_locale is mr_IN.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1640:9'): the function returns a vector of words if : the language is persian, the utf_locale is fa_IR.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE -- Failure ('test-utf_locale.R:1977:9'): the function returns a vector of words if : the language is spanish, the utf_locale is es_ES.UTF-8, the string split is TRUE, the to_upper is TRUE and the remove_stopwords parameter is TRUE -- `res_tes` is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 14 | WARN 614 | SKIP 0 | PASS 460 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE See '/tmp/th798/16180762/R-release/1460/textTinyR.Rcheck/00check.log' for details. [1] "2025-03-29 01:40:25 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: Empty data.table (0 rows and 3 cols): checking,master,release > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } >