Note: the module "R" cannot be unloaded because it was not loaded.

WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-03-29 r88074) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

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> cargs <- commandArgs(trailingOnly=TRUE)
> if(length(cargs)==0){
+   ## before running interactively, make sure to start emacs/R with
+   ## environment defined in /scratch/...check_one.sh, particularly
+   ## R_LIBS_USER=/tmp/... otherwise we get error when installing
+   ## data.table.
+   base <- "/scratch/th798/data.table-revdeps/*"
+   cargs <- c(
+     Sys.glob(file.path(base,"deps.csv")),
+     "349",
+     Sys.glob(file.path(base, "data.table_release_*tar.gz")),
+     Sys.glob(file.path(base, "data.table_master_*tar.gz"))
+   )
+ }
> names(cargs) <- c("deps.csv", "task.str", "release", "master")
> dput(cargs)
c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-30/deps.csv", 
task.str = "1345", release = "/scratch/th798/data.table-revdeps/2025-03-30/data.table_release_1.17.0.tar.gz", 
master = "/scratch/th798/data.table-revdeps/2025-03-30/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz"
)
> (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers
[1] "/tmp/th798/16190367/R-devel/1345"
> if(requireNamespace("R.cache"))R.cache::getCachePath()
Loading required namespace: R.cache
[1] "/tmp/th798/16190367/R-devel/1345/R.cache"
> task.id <- as.integer(cargs[["task.str"]])
> deps.df <- read.csv(cargs[["deps.csv"]])
> (rev.dep <- deps.df$Package[task.id])
[1] "sjtable2df"
> job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id)
> setwd(task.dir)
> .libPaths()
[1] "/tmp/th798/16190367/R-devel/1345/library"
[2] "/projects/genomic-ml/R/R-devel/library"  
> options(repos=c(#this should be in ~/.Rprofile too.
+   CRAN="http://cloud.r-project.org"))
> print(Sys.time())
[1] "2025-03-30 01:01:16 MST"
> install.time <- system.time({
+   install.packages(rev.dep, dep=TRUE)
+ })
Installing package into '/tmp/th798/16190367/R-devel/1345/library'
(as 'lib' is unspecified)
also installing the dependencies 'bayestestR', 'parameters', 'insight', 'datawizard', 'effectsize', 'xmlparsedata', 'ggeffects', 'performance', 'sjstats', 'lintr', 'sjPlot'

trying URL 'http://cloud.r-project.org/src/contrib/bayestestR_0.15.2.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/parameters_0.24.2.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/insight_1.1.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/datawizard_1.0.2.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/effectsize_1.0.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/xmlparsedata_1.0.5.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/ggeffects_2.2.1.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/performance_0.13.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/sjstats_0.19.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/lintr_3.2.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/sjPlot_2.8.17.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/sjtable2df_0.0.3.tar.gz'
* installing *source* package 'insight' ...
** this is package 'insight' version '1.1.0'
** package 'insight' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (insight)
* installing *source* package 'xmlparsedata' ...
** this is package 'xmlparsedata' version '1.0.5'
** package 'xmlparsedata' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xmlparsedata)
* installing *source* package 'sjtable2df' ...
** this is package 'sjtable2df' version '0.0.3'
** package 'sjtable2df' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sjtable2df)
* installing *source* package 'datawizard' ...
** this is package 'datawizard' version '1.0.2'
** package 'datawizard' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (datawizard)
* installing *source* package 'lintr' ...
** this is package 'lintr' version '3.2.0'
** package 'lintr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lintr)
* installing *source* package 'bayestestR' ...
** this is package 'bayestestR' version '0.15.2'
** package 'bayestestR' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayestestR)
* installing *source* package 'ggeffects' ...
** this is package 'ggeffects' version '2.2.1'
** package 'ggeffects' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggeffects)
* installing *source* package 'parameters' ...
** this is package 'parameters' version '0.24.2'
** package 'parameters' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (parameters)
* installing *source* package 'performance' ...
** this is package 'performance' version '0.13.0'
** package 'performance' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (performance)
* installing *source* package 'effectsize' ...
** this is package 'effectsize' version '1.0.0'
** package 'effectsize' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (effectsize)
* installing *source* package 'sjstats' ...
** this is package 'sjstats' version '0.19.0'
** package 'sjstats' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sjstats)
* installing *source* package 'sjPlot' ...
** this is package 'sjPlot' version '2.8.17'
** package 'sjPlot' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sjPlot)

The downloaded source packages are in
	'/tmp/th798/16190367/Rtmp6tq247/downloaded_packages'
> cat("Time to install revdep:\n")
Time to install revdep:
> print(install.time)
   user  system elapsed 
180.959   6.768 311.310 
> print(Sys.time())
[1] "2025-03-30 01:06:27 MST"
> downloaded_packages <- file.path(
+   tempdir(),
+   "downloaded_packages")
> dl.glob <- file.path(
+   downloaded_packages,
+   paste0(rev.dep,"_*.tar.gz"))
> rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob))
> colnames(rev.dep.dl.row) <- c("pkg","path")
> rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE)
> pkg.Rcheck <- paste0(rev.dep, ".Rcheck")
> 
> proj.dir <- "~/genomic-ml/data.table-revdeps"
> source(file.path(proj.dir, "myStatus.R"))
> Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]]))
> dir.create(Rvers, showWarnings=FALSE)
> Rcheck.list <- list()
> for(dt.version.short in c("release", "master")){
+   dt.tar.gz <- cargs[[dt.version.short]]
+   dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz)
+   print(Sys.time())
+   install.packages(dt.tar.gz, repos=NULL)
+   print(Sys.time())
+   check.cmd <- get_check_cmd(rev.dep.release.tar.gz)
+   system(check.cmd)
+   print(Sys.time())
+   dest.Rcheck <- file.path(
+     Rvers,
+     paste0(dt.version, ".Rcheck"))
+   unlink(dest.Rcheck, recursive=TRUE)
+   file.rename(pkg.Rcheck, dest.Rcheck)
+   Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log")
+ }
[1] "2025-03-30 01:06:27 MST"
Installing package into '/tmp/th798/16190367/R-devel/1345/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.17.0'
** package 'data.table' successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16190367/R-devel/1345/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-30 01:06:54 MST"
* using log directory '/tmp/th798/16190367/R-devel/1345/sjtable2df.Rcheck'
* using R Under development (unstable) (2025-03-29 r88074)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'sjtable2df/DESCRIPTION' ... OK
* this is package 'sjtable2df' version '0.0.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'sjtable2df' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

[1] "2025-03-30 01:08:25 MST"
[1] "2025-03-30 01:08:25 MST"
Installing package into '/tmp/th798/16190367/R-devel/1345/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.17.99'
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16190367/R-devel/1345/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-30 01:08:54 MST"
* using log directory '/tmp/th798/16190367/R-devel/1345/sjtable2df.Rcheck'
* using R Under development (unstable) (2025-03-29 r88074)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'sjtable2df/DESCRIPTION' ... OK
* this is package 'sjtable2df' version '0.0.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'sjtable2df' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

[1] "2025-03-30 01:10:33 MST"
> system(paste(c("diff -u", Rcheck.list), collapse=" "))
> library(data.table, lib.loc=R.home("library"))
> (sig.diff.dt <- myDiff(Rvers))
Key: <checking>
Empty data.table (0 rows and 3 cols): checking,master,release
> 
> ## If there are significant differences, use git bisect to find when
> ## they started.
> if(nrow(sig.diff.dt)){
+   dt.git <- file.path(task.dir, "data.table.git")
+   system(paste("cd ~/R/data.table && git fetch --tags"))
+   system(paste("git clone ~/R/data.table", dt.git))
+   release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]])
+   rev.parse.cmd <- paste(
+     "cd", dt.git, "&& git rev-parse master")
+   master.sha <- system(rev.parse.cmd, intern=TRUE)
+   merge.base.cmd <- paste(
+     "cd", dt.git, "&& git merge-base master", release.tag)
+   merge.base.sha <- system(merge.base.cmd, intern=TRUE)
+   old.sha <- merge.base.sha
+   run_R <- file.path(proj.dir, "install_dt_then_check_dep.R")
+   sig.diff.dt[, first.bad.commit := NA_character_]
+   sig.diff.dt[, comments := NA_character_]
+   for(diff.i in 1:nrow(sig.diff.dt)){
+     sig.diff.row <- sig.diff.dt[diff.i]
+     bisect.cmd <- paste(
+       "cd", dt.git, "&&",
+       "git bisect start &&",
+       "git bisect old", old.sha, "&&",
+       "git bisect new master &&",
+       "git bisect run",
+       R.home('bin/Rscript'),
+       run_R,
+       shQuote(sig.diff.row$checking),
+       sig.diff.row$release,
+       rev.dep.release.tar.gz,
+       release.tag)
+     print(bisect.cmd)
+     bisect.out <- system(bisect.cmd, intern=TRUE)
+     cat(bisect.out,sep="\n")
+     if(is.null(attr(bisect.out,"status"))){
+       first.bad.sha <- nc::capture_all_str(
+         bisect.out,
+         sha="[0-9a-f]+",
+         " is the first new commit")$sha
+       parent.cmd <- paste(
+         "cd ~/R/data.table && git log --pretty=%P -n 1",
+         first.bad.sha)
+       parent.sha <- system(parent.cmd, intern=TRUE)
+       sig.diff.dt[diff.i, first.bad.commit := first.bad.sha]
+       parent.msg <- paste0("parent=", parent.sha)
+       this.comment <- if(parent.sha==old.sha){
+         paste(parent.msg, "same as git bisect old")
+       }else if(first.bad.sha==master.sha){
+         paste("same as git bisect new=master,", parent.msg)
+       }else{
+         parent.msg
+       }
+       sig.diff.dt[diff.i, comments := this.comment]
+     }
+   }
+   ## add CRAN column.
+   sig.diff.dt[, CRAN := {
+     flavor <- get_flavor(Rvers)
+     details <- data.table(flavor=unique(flavor))[, {
+       base <- "https://www.r-project.org/nosvn/R.check/"
+       u <- paste0(base, flavor, "/", rev.dep, "-00check.txt")
+       check.txt <- tempfile()
+       tryCatch({
+         download.file(u, check.txt, quiet=TRUE)
+       }, error=function(e){
+         NULL
+       })
+       check.lines <- if(file.exists(check.txt)){
+         readLines(check.txt,encoding="UTF-8")
+       }else{
+         ""
+       }
+       repl.lines <- gsub("[\u2018\u2019]", "'", check.lines)
+       ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C.
+       myStatus(line.vec=repl.lines)
+     }, by=flavor]
+     select.dt <- data.table(flavor, checking)
+     details[select.dt, msg, on=.(flavor, checking)]
+   }]
+   dir.create(file.path(job.dir, Rvers))
+   diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv")
+   data.table::fwrite(sig.diff.dt, diffs.csv)
+   print(sig.diff.dt)
+ }
> 
WARNING: ignoring environment value of R_HOME

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> cargs <- commandArgs(trailingOnly=TRUE)
> if(length(cargs)==0){
+   ## before running interactively, make sure to start emacs/R with
+   ## environment defined in /scratch/...check_one.sh, particularly
+   ## R_LIBS_USER=/tmp/... otherwise we get error when installing
+   ## data.table.
+   base <- "/scratch/th798/data.table-revdeps/*"
+   cargs <- c(
+     Sys.glob(file.path(base,"deps.csv")),
+     "349",
+     Sys.glob(file.path(base, "data.table_release_*tar.gz")),
+     Sys.glob(file.path(base, "data.table_master_*tar.gz"))
+   )
+ }
> names(cargs) <- c("deps.csv", "task.str", "release", "master")
> dput(cargs)
c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-30/deps.csv", 
task.str = "1345", release = "/scratch/th798/data.table-revdeps/2025-03-30/data.table_release_1.17.0.tar.gz", 
master = "/scratch/th798/data.table-revdeps/2025-03-30/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz"
)
> (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers
[1] "/tmp/th798/16190367/R-release/1345"
> if(requireNamespace("R.cache"))R.cache::getCachePath()
Loading required namespace: R.cache
[1] "/tmp/th798/16190367/R-release/1345/R.cache"
> task.id <- as.integer(cargs[["task.str"]])
> deps.df <- read.csv(cargs[["deps.csv"]])
> (rev.dep <- deps.df$Package[task.id])
[1] "sjtable2df"
> job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id)
> setwd(task.dir)
> .libPaths()
[1] "/tmp/th798/16190367/R-release/1345/library"
[2] "/projects/genomic-ml/R/R-release/library"  
> options(repos=c(#this should be in ~/.Rprofile too.
+   CRAN="http://cloud.r-project.org"))
> print(Sys.time())
[1] "2025-03-30 01:10:40 MST"
> install.time <- system.time({
+   install.packages(rev.dep, dep=TRUE)
+ })
Installing package into '/tmp/th798/16190367/R-release/1345/library'
(as 'lib' is unspecified)
also installing the dependencies 'parameters', 'insight', 'datawizard', 'bayestestR', 'effectsize', 'xmlparsedata', 'ggeffects', 'performance', 'sjstats', 'lintr', 'sjPlot'

trying URL 'http://cloud.r-project.org/src/contrib/parameters_0.24.2.tar.gz'
Content type 'application/x-gzip' length 750893 bytes (733 KB)
==================================================
downloaded 733 KB

trying URL 'http://cloud.r-project.org/src/contrib/insight_1.1.0.tar.gz'
Content type 'application/x-gzip' length 1024589 bytes (1000 KB)
==================================================
downloaded 1000 KB

trying URL 'http://cloud.r-project.org/src/contrib/datawizard_1.0.2.tar.gz'
Content type 'application/x-gzip' length 413189 bytes (403 KB)
==================================================
downloaded 403 KB

trying URL 'http://cloud.r-project.org/src/contrib/bayestestR_0.15.2.tar.gz'
Content type 'application/x-gzip' length 420659 bytes (410 KB)
==================================================
downloaded 410 KB

trying URL 'http://cloud.r-project.org/src/contrib/effectsize_1.0.0.tar.gz'
Content type 'application/x-gzip' length 384701 bytes (375 KB)
==================================================
downloaded 375 KB

trying URL 'http://cloud.r-project.org/src/contrib/xmlparsedata_1.0.5.tar.gz'
Content type 'application/x-gzip' length 8993 bytes
==================================================
downloaded 8993 bytes

trying URL 'http://cloud.r-project.org/src/contrib/ggeffects_2.2.1.tar.gz'
Content type 'application/x-gzip' length 375966 bytes (367 KB)
==================================================
downloaded 367 KB

trying URL 'http://cloud.r-project.org/src/contrib/performance_0.13.0.tar.gz'
Content type 'application/x-gzip' length 2165084 bytes (2.1 MB)
==================================================
downloaded 2.1 MB

trying URL 'http://cloud.r-project.org/src/contrib/sjstats_0.19.0.tar.gz'
Content type 'application/x-gzip' length 150265 bytes (146 KB)
==================================================
downloaded 146 KB

trying URL 'http://cloud.r-project.org/src/contrib/lintr_3.2.0.tar.gz'
Content type 'application/x-gzip' length 1390909 bytes (1.3 MB)
==================================================
downloaded 1.3 MB

trying URL 'http://cloud.r-project.org/src/contrib/sjPlot_2.8.17.tar.gz'
Content type 'application/x-gzip' length 913253 bytes (891 KB)
==================================================
downloaded 891 KB

trying URL 'http://cloud.r-project.org/src/contrib/sjtable2df_0.0.3.tar.gz'
Content type 'application/x-gzip' length 24510 bytes (23 KB)
==================================================
downloaded 23 KB

* installing *source* package 'insight' ...
** package 'insight' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (insight)
* installing *source* package 'xmlparsedata' ...
** package 'xmlparsedata' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xmlparsedata)
* installing *source* package 'sjtable2df' ...
** package 'sjtable2df' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sjtable2df)
* installing *source* package 'datawizard' ...
** package 'datawizard' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (datawizard)
* installing *source* package 'lintr' ...
** package 'lintr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lintr)
* installing *source* package 'bayestestR' ...
** package 'bayestestR' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayestestR)
* installing *source* package 'ggeffects' ...
** package 'ggeffects' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggeffects)
* installing *source* package 'parameters' ...
** package 'parameters' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (parameters)
* installing *source* package 'performance' ...
** package 'performance' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (performance)
* installing *source* package 'effectsize' ...
** package 'effectsize' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (effectsize)
* installing *source* package 'sjstats' ...
** package 'sjstats' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sjstats)
* installing *source* package 'sjPlot' ...
** package 'sjPlot' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sjPlot)

The downloaded source packages are in
	'/tmp/th798/16190367/RtmpXZRehF/downloaded_packages'
> cat("Time to install revdep:\n")
Time to install revdep:
> print(install.time)
   user  system elapsed 
175.193   6.110 212.872 
> print(Sys.time())
[1] "2025-03-30 01:14:13 MST"
> downloaded_packages <- file.path(
+   tempdir(),
+   "downloaded_packages")
> dl.glob <- file.path(
+   downloaded_packages,
+   paste0(rev.dep,"_*.tar.gz"))
> rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob))
> colnames(rev.dep.dl.row) <- c("pkg","path")
> rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE)
> pkg.Rcheck <- paste0(rev.dep, ".Rcheck")
> 
> proj.dir <- "~/genomic-ml/data.table-revdeps"
> source(file.path(proj.dir, "myStatus.R"))
> Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]]))
> dir.create(Rvers, showWarnings=FALSE)
> Rcheck.list <- list()
> for(dt.version.short in c("release", "master")){
+   dt.tar.gz <- cargs[[dt.version.short]]
+   dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz)
+   print(Sys.time())
+   install.packages(dt.tar.gz, repos=NULL)
+   print(Sys.time())
+   check.cmd <- get_check_cmd(rev.dep.release.tar.gz)
+   system(check.cmd)
+   print(Sys.time())
+   dest.Rcheck <- file.path(
+     Rvers,
+     paste0(dt.version, ".Rcheck"))
+   unlink(dest.Rcheck, recursive=TRUE)
+   file.rename(pkg.Rcheck, dest.Rcheck)
+   Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log")
+ }
[1] "2025-03-30 01:14:13 MST"
Installing package into '/tmp/th798/16190367/R-release/1345/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** package 'data.table' successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16190367/R-release/1345/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-30 01:14:36 MST"
* using log directory '/tmp/th798/16190367/R-release/1345/sjtable2df.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'sjtable2df/DESCRIPTION' ... OK
* this is package 'sjtable2df' version '0.0.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'sjtable2df' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'/home/th798/R/R-release/bin/BATCH: line 60: 3551003 Segmentation fault      (core dumped) ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1

 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(sjtable2df)
  > 
  > test_check("sjtable2df")
  
   *** caught segfault ***
  address (nil), cause 'unknown'
  
  Traceback:
   1: .Call(merPredDCreate, as(X, "matrix"), Lambdat, LamtUt, Lind,     RZX, Ut, Utr, V, VtV, Vtr, Xwts, Zt, beta0, delb, delu, theta,     u0)
   2: initializePtr()
   3: .Object$initialize(...)
   4: initialize(value, ...)
   5: initialize(value, ...)
   6: methods::new(def, ...)
   7: (new("refMethodDef", .Data = function (...) {    methods::new(def, ...)}, mayCall = c("methods", "new"), name = "new", refClassName = "refGeneratorSlot",     superClassMethod = ""))(Zt = new("dgCMatrix", i = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), p = 0:100, Dim = c(4L, 100L), Dimnames = list(c("1", "2", "3", "4"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100")), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()), theta = 1, Lambdat = new("dgCMatrix",     i = 0:3, p = 0:4, Dim = c(4L, 4L), Dimnames = list(NULL,         NULL), x = c(1, 1, 1, 1), factors = list()), Lind = c(1L, 1L, 1L, 1L), n = 100L, X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 1, 0, 1, 1, 0, 0, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1, 0, 1, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 1, 0, 1, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1))
   8: do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")],     n = nrow(X), list(X = X)))
   9: (function (fr, X, reTrms, family, nAGQ = 1L, verbose = 0L, maxit = 100L,     control = glmerControl(), ...) {    stopifnot(length(nAGQ <- as.integer(nAGQ)) == 1L, 0L <= nAGQ,         nAGQ <= 25L)    verbose <- as.integer(verbose)    maxit <- as.integer(maxit)    rho <- list2env(list(verbose = verbose, maxit = maxit, tolPwrss = control$tolPwrss,         compDev = control$compDev), parent = parent.frame())    rho$pp <- do.call(merPredD$new, c(reTrms[c("Zt", "theta",         "Lambdat", "Lind")], n = nrow(X), list(X = X)))    rho$resp <- if (missing(fr))         mkRespMod(family = family, ...)    else mkRespMod(fr, family = family)    nAGQinit <- if (control$nAGQ0initStep)         0L    else 1L    if (length(y <- rho$resp$y) > 0) {        checkResponse(y, control$checkControl)        rho$verbose <- as.integer(verbose)        .Call(glmerLaplace, rho$pp$ptr(), rho$resp$ptr(), nAGQinit,             control$tolPwrss, maxit, verbose)        rho$lp0 <- rho$pp$linPred(1)        rho$pwrssUpdate <- glmerPwrssUpdate    }    rho$lower <- reTrms$lower    mkdevfun(rho, nAGQinit, maxit = maxit, verbose = verbose,         control = control)})(fr = list(var1 = c(1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 1L), var2 = c(1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L), var4 = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4)), X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 1, 0, 1, 1, 0, 0, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1, 0, 1, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 1, 0, 1, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1), reTrms = list(Zt = new("dgCMatrix",     i = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,     2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,     2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,     3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), p = 0:100,     Dim = c(4L, 100L), Dimnames = list(c("1", "2", "3", "4"),         c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10",         "11", "12", "13", "14", "15", "16", "17", "18", "19",         "20", "21", "22", "23", "24", "25", "26", "27", "28",         "29", "30", "31", "32", "33", "34", "35", "36", "37",         "38", "39", "40", "41", "42", "43", "44", "45", "46",         "47", "48", "49", "50", "51", "52", "53", "54", "55",         "56", "57", "58", "59", "60", "61", "62", "63", "64",         "65", "66", "67", "68", "69", "70", "71", "72", "73",         "74", "75", "76", "77", "78", "79", "80", "81", "82",         "83", "84", "85", "86", "87", "88", "89", "90", "91",         "92", "93", "94", "95", "96", "97", "98", "99", "100"        )), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()), theta = 1,     Lind = c(1L, 1L, 1L, 1L), Gp = c(0L, 4L), lower = 0, Lambdat = new("dgCMatrix",         i = 0:3, p = 0:4, Dim = c(4L, 4L), Dimnames = list(NULL,             NULL), x = c(1, 1, 1, 1), factors = list()), flist = list(        var4 = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,         1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,         2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,         2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L,         3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,         3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L, 4L, 4L,         4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L,         4L, 4L, 4L, 4L, 4L)), cnms = list(var4 = "(Intercept)"),     Ztlist = list(`1 | var4` = new("dgCMatrix", i = c(0L, 0L,     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,     1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,     2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L,     3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,     3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), p = 0:100, Dim = c(4L, 100L    ), Dimnames = list(c("1", "2", "3", "4"), c("1", "2", "3",     "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14",     "15", "16", "17", "18", "19", "20", "21", "22", "23", "24",     "25", "26", "27", "28", "29", "30", "31", "32", "33", "34",     "35", "36", "37", "38", "39", "40", "41", "42", "43", "44",     "45", "46", "47", "48", "49", "50", "51", "52", "53", "54",     "55", "56", "57", "58", "59", "60", "61", "62", "63", "64",     "65", "66", "67", "68", "69", "70", "71", "72", "73", "74",     "75", "76", "77", "78", "79", "80", "81", "82", "83", "84",     "85", "86", "87", "88", "89", "90", "91", "92", "93", "94",     "95", "96", "97", "98", "99", "100")), x = c(1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1), factors = list())), nl = c(var4 = 4L)), family = list(    family = "binomial", link = "logit", linkfun = function (mu)     .Call(C_logit_link, mu), linkinv = function (eta)     .Call(C_logit_linkinv, eta), variance = function (mu)     mu * (1 - mu), dev.resids = function (y, mu, wt)     .Call(C_binomial_dev_resids, y, mu, wt), aic = function (y,         n, mu, wt, dev)     {        m <- if (any(n > 1))             n        else wt        -2 * sum(ifelse(m > 0, (wt/m), 0) * dbinom(round(m *             y), round(m), mu, log = TRUE))    }, mu.eta = function (eta)     .Call(C_logit_mu_eta, eta), initialize = {        if (NCOL(y) == 1) {            if (is.factor(y))                 y <- y != levels(y)[1L]            n <- rep.int(1, nobs)            y[weights == 0] <- 0            if (any(y < 0 | y > 1))                 stop("y values must be 0 <= y <= 1")            mustart <- (weights * y + 0.5)/(weights + 1)            m <- weights * y            if ("binomial" == "binomial" && any(abs(m - round(m)) >                 0.001))                 warning(gettextf("non-integer #successes in a %s glm!",                   "binomial"), domain = NA)        }        else if (NCOL(y) == 2) {            if ("binomial" == "binomial" && any(abs(y - round(y)) >                 0.001))                 warning(gettextf("non-integer counts in a %s glm!",                   "binomial"), domain = NA)            n <- (y1 <- y[, 1L]) + y[, 2L]            y <- y1/n            if (any(n0 <- n == 0))                 y[n0] <- 0            weights <- weights * n            mustart <- (n * y + 0.5)/(n + 1)        }        else stop(gettextf("for the '%s' family, y must be a vector of 0 and 1's\nor a 2 column matrix where col 1 is no. successes and col 2 is no. failures",             "binomial"), domain = NA)    }, validmu = function (mu)     all(is.finite(mu)) && all(mu > 0 & mu < 1), valideta = function (eta)     TRUE, simulate = function (object, nsim)     {        ftd <- fitted(object)        n <- length(ftd)        ntot <- n * nsim        wts <- object$prior.weights        if (any(wts%%1 != 0))             stop("cannot simulate from non-integer prior.weights")        if (!is.null(m <- object$model)) {            y <- model.response(m)            if (is.factor(y)) {                yy <- factor(1 + rbinom(ntot, size = 1, prob = ftd),                   labels = levels(y))                split(yy, rep(seq_len(nsim), each = n))            }            else if (is.matrix(y) && ncol(y) == 2) {                yy <- vector("list", nsim)                for (i in seq_len(nsim)) {                  Y <- rbinom(n, size = wts, prob = ftd)                  YY <- cbind(Y, wts - Y)                  colnames(YY) <- colnames(y)                  yy[[i]] <- YY                }                yy            }            else rbinom(ntot, size = wts, prob = ftd)/wts        }        else rbinom(ntot, size = wts, prob = ftd)/wts    }, dispersion = 1), wmsgs = character(0), verbose = 0L, control = list(    optimizer = c("bobyqa", "Nelder_Mead"), restart_edge = FALSE,     boundary.tol = 1e-05, calc.derivs = TRUE, use.last.params = FALSE,     checkControl = list(check.nobs.vs.rankZ = "ignore", check.nobs.vs.nlev = "stop",         check.nlev.gtreq.5 = "ignore", check.nlev.gtr.1 = "stop",         check.nobs.vs.nRE = "stop", check.rankX = "message+drop.cols",         check.scaleX = "warning", check.formula.LHS = "stop",         check.response.not.const = "stop"), checkConv = list(        check.conv.grad = list(action = "warning", tol = 0.002,             relTol = NULL), check.conv.singular = list(action = "message",             tol = 1e-04), check.conv.hess = list(action = "warning",             tol = 1e-06)), optCtrl = list(), tolPwrss = 1e-07,     compDev = TRUE, nAGQ0initStep = TRUE), nAGQ = 0L)
  10: do.call(mkGlmerDevfun, c(glmod, list(verbose = verbose, control = control,     nAGQ = nAGQinit)))
  11: lme4::glmer(var1 ~ var2 + (1 | var4), data = dataset, family = binomial(link = "logit"))
  12: eval(code, test_env)
  13: eval(code, test_env)
  14: withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error)
  15: doTryCatch(return(expr), name, parentenv, handler)
  16: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  17: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  18: doTryCatch(return(expr), name, parentenv, handler)
  19: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
  20: tryCatchList(expr, classes, parentenv, handlers)
  21: tryCatch(withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error), error = handle_fatal,     skip = function(e) {    })
  22: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter())
  23: test_that(desc = "correct functioning of mtab2df: glmer", code = {    local_edition(3)    set.seed(1)    dataset <- data.table::data.table(var1 = factor(sample(x = c("yes",         "no"), size = 100, replace = TRUE, prob = c(0.3, 0.7))),         var2 = factor(sample(x = c("yes", "no"), size = 100,             replace = TRUE)), var3 = rnorm(100), var4 = c(rep(1,             25), rep(2, 25), rep(3, 25), rep(4, 25)))    m1 <- lme4::glmer(var1 ~ var2 + (1 | var4), data = dataset,         family = binomial(link = "logit"))    m2 <- lme4::glmer(var1 ~ var2 + var3 + (1 | var4), data = dataset,         family = binomial(link = "logit"))    m_table <- sjPlot::tab_model(m1, m2, show.aic = TRUE)    final_tab <- sjtable2df::mtab2df(mtab = m_table, n_models = 2)    expect_type(final_tab, "list")    expect_true(inherits(final_tab, "data.table"))    expect_true(nrow(final_tab) == 10)    expect_snapshot_value(x = final_tab, style = "json2", cran = FALSE,         tolerance = 1, ignore_function_env = TRUE)    final_tab <- sjtable2df::mtab2df(mtab = m_table, n_models = 2,         output = "data.frame")    expect_type(final_tab, "list")    expect_true(inherits(final_tab, "data.frame"))    expect_snapshot_value(x = final_tab, style = "json2", cran = FALSE,         tolerance = 1, ignore_function_env = TRUE)    final_tab <- sjtable2df::mtab2df(mtab = m_table, n_models = 2,         output = "kable")    expect_type(final_tab, "character")    expect_true(inherits(final_tab, "knitr_kable"))    expect_snapshot_value(x = final_tab, style = "json2", cran = FALSE,         tolerance = 1, ignore_function_env = TRUE)})
  24: eval(code, test_env)
  25: eval(code, test_env)
  26: withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error)
  27: doTryCatch(return(expr), name, parentenv, handler)
  28: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  29: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  30: doTryCatch(return(expr), name, parentenv, handler)
  31: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
  32: tryCatchList(expr, classes, parentenv, handlers)
  33: tryCatch(withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error), error = handle_fatal,     skip = function(e) {    })
  34: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
  35: source_file(path, env = env(env), desc = desc, error_call = error_call)
  36: FUN(X[[i]], ...)
  37: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
  38: doTryCatch(return(expr), name, parentenv, handler)
  39: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  40: tryCatchList(expr, classes, parentenv, handlers)
  41: tryCatch(code, testthat_abort_reporter = function(cnd) {    cat(conditionMessage(cnd), "\n")    NULL})
  42: with_reporter(reporters$multi, lapply(test_paths, test_one_file,     env = env, desc = desc, error_call = error_call))
  43: test_files_serial(test_dir = test_dir, test_package = test_package,     test_paths = test_paths, load_helpers = load_helpers, reporter = reporter,     env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     desc = desc, load_package = load_package, error_call = error_call)
  44: test_files(test_dir = path, test_paths = test_paths, test_package = package,     reporter = reporter, load_helpers = load_helpers, env = env,     stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     load_package = load_package, parallel = parallel)
  45: test_dir("testthat", package = package, reporter = reporter,     ..., load_package = "installed")
  46: test_check("sjtable2df")
  An irrecoverable exception occurred. R is aborting now ...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ...sh: line 1: 3551489 Segmentation fault      (core dumped) '/home/th798/R/R-release/bin/R' --vanilla --no-echo > '/tmp/th798/16190367/R-release/1345/sjtable2df.Rcheck/build_vignettes.log' 2>&1 < '/tmp/th798/16190367/Rtmpv5CxGJ/file362a9727864431'
 ERROR
Error(s) in re-building vignettes:
--- re-building 'sjtable2df_overview.Rmd' using rmarkdown

 *** caught segfault ***
address (nil), cause 'unknown'

Traceback:
 1: .Call(merPredDCreate, as(X, "matrix"), Lambdat, LamtUt, Lind,     RZX, Ut, Utr, V, VtV, Vtr, Xwts, Zt, beta0, delb, delu, theta,     u0)
 2: initializePtr()
 3: .Object$initialize(...)
 4: initialize(value, ...)
 5: initialize(value, ...)
 6: methods::new(def, ...)
 7: (new("refMethodDef", .Data = function (...) {    methods::new(def, ...)}, mayCall = c("methods", "new"), name = "new", refClassName = "refGeneratorSlot",     superClassMethod = ""))(Zt = new("dgCMatrix", i = c(0L, 3L, 6L, 0L, 1L, 4L, 6L, 2L, 5L, 1L, 2L, 2L, 0L, 4L, 4L, 1L, 5L, 5L, 1L, 6L, 0L, 6L, 4L, 4L, 0L, 0L, 5L, 4L, 4L, 1L, 1L, 5L, 0L, 3L, 6L, 0L, 3L, 2L, 5L, 1L, 1L, 5L, 6L, 3L, 3L, 3L, 1L, 3L, 0L, 6L, 5L, 0L, 3L, 0L, 6L, 5L, 1L, 6L, 2L, 1L, 5L, 5L, 1L, 4L, 1L, 5L, 5L, 5L, 0L, 2L, 2L, 5L, 6L, 6L, 3L, 5L, 6L, 2L, 0L, 3L, 4L, 0L, 0L, 6L, 5L, 3L, 6L, 4L, 4L, 3L, 5L, 4L, 3L, 3L, 0L, 4L, 4L, 6L, 5L, 0L, 0L, 6L, 6L, 2L, 5L, 1L, 1L, 2L, 5L, 1L, 6L, 6L, 3L, 2L, 4L, 1L, 1L, 0L, 2L, 2L, 1L, 6L, 1L, 4L, 1L, 4L, 3L, 6L, 6L, 4L, 3L, 5L, 0L, 2L, 1L, 2L, 2L, 0L, 4L, 5L, 5L, 5L, 3L, 3L, 0L, 4L, 4L, 5L, 0L, 2L, 5L, 2L, 6L, 5L, 2L, 2L, 3L, 0L, 0L, 3L, 1L, 5L, 0L, 1L, 6L, 6L, 2L, 6L, 6L, 3L, 0L, 2L, 4L, 2L, 3L, 1L, 0L, 3L, 6L, 0L, 3L, 1L, 4L, 1L, 1L, 1L, 2L, 0L, 1L, 2L, 6L, 2L, 2L, 5L, 2L, 4L, 2L, 0L, 1L, 3L, 1L, 1L, 6L, 3L, 4L, 0L, 4L, 6L, 6L, 4L, 4L, 3L, 5L, 5L, 3L, 5L, 3L, 6L, 1L, 0L, 2L, 0L, 5L, 0L, 3L, 6L, 4L, 0L, 2L, 3L, 6L, 4L, 3L, 0L, 0L, 4L, 4L, 0L, 4L, 3L, 1L, 5L, 1L, 0L, 4L, 4L, 5L, 5L, 1L, 5L, 5L, 4L, 1L, 5L, 5L, 3L, 1L, 4L, 4L, 6L, 3L, 3L, 0L, 1L, 3L, 0L, 0L, 2L, 0L, 6L, 0L, 5L, 5L, 5L, 3L, 2L, 4L, 2L, 4L, 0L, 0L, 6L, 0L, 6L, 5L, 4L, 3L, 6L, 6L, 3L, 3L, 5L, 3L, 4L, 6L, 1L, 3L, 0L, 3L, 5L, 6L, 3L, 4L, 3L, 1L, 1L, 1L, 0L, 0L, 3L, 3L, 4L, 4L, 5L, 0L, 4L, 3L, 6L, 5L, 6L, 0L, 6L, 1L, 0L, 4L, 1L, 6L, 6L, 2L, 2L, 1L, 0L, 3L, 1L, 4L, 4L, 2L, 1L, 3L, 2L, 2L, 6L, 5L, 5L, 0L, 6L, 3L, 6L, 4L, 3L, 5L, 4L, 2L, 2L, 0L, 0L, 1L, 4L, 0L, 2L, 1L, 6L, 3L, 0L, 2L, 0L, 6L, 6L, 5L, 4L, 3L, 1L, 4L, 4L, 2L, 1L, 5L, 3L, 6L, 0L, 0L, 6L, 5L, 0L, 2L, 2L, 4L, 6L, 1L, 4L, 3L, 1L, 1L, 1L, 3L, 0L, 5L, 0L, 0L, 4L, 5L, 5L, 0L, 2L, 5L, 2L, 2L, 2L, 0L, 3L, 6L, 3L, 4L, 3L, 0L, 4L, 5L, 4L, 1L, 3L, 2L, 0L, 6L, 4L, 4L, 2L, 3L, 0L, 6L, 2L, 2L, 3L, 5L, 0L, 0L, 5L, 2L, 3L, 6L, 1L, 3L, 6L, 4L, 2L, 3L, 6L, 2L, 6L, 0L, 4L, 2L, 6L, 4L, 3L, 0L, 0L, 4L, 4L, 6L, 2L, 3L, 4L, 5L, 6L, 2L, 2L, 1L, 5L, 4L, 1L, 6L, 1L, 5L, 1L, 4L, 0L, 0L, 4L, 5L, 4L, 4L, 1L, 1L, 0L, 0L, 0L, 6L, 3L, 5L, 1L, 3L, 4L, 1L, 3L, 3L, 6L, 6L, 4L, 1L, 0L, 3L, 4L, 1L, 0L, 4L, 4L, 0L, 3L, 1L, 5L, 2L, 1L, 4L, 3L, 0L, 5L, 5L, 4L, 0L, 2L, 6L, 3L, 0L, 2L, 5L, 5L, 2L, 6L, 4L, 3L, 2L, 4L, 1L, 4L, 4L, 3L, 2L, 1L, 1L, 5L, 4L, 6L, 6L, 6L, 1L, 5L, 1L, 4L, 6L, 2L, 0L, 2L, 6L, 0L, 5L, 4L, 5L, 2L, 2L, 3L, 5L, 1L, 5L, 0L, 5L, 0L, 3L, 4L, 5L, 1L, 1L, 6L, 3L, 3L, 4L, 6L, 5L, 2L, 3L, 3L, 3L, 3L, 2L, 3L, 6L, 5L, 1L, 4L, 2L, 5L, 6L, 4L, 1L, 5L, 2L, 4L, 3L, 3L, 1L, 4L, 4L, 5L, 6L, 1L, 4L, 6L, 4L, 2L, 1L, 6L, 3L, 6L, 0L, 5L, 6L, 2L, 3L, 3L, 1L, 3L, 4L, 0L, 6L, 4L, 5L, 4L, 0L, 2L, 2L, 1L, 3L, 3L, 2L, 5L, 3L, 0L, 5L, 3L, 5L, 0L, 2L, 2L, 5L, 4L, 4L, 0L, 0L, 5L, 1L, 2L, 6L, 3L, 6L, 5L, 0L, 2L, 2L, 1L, 4L, 0L, 1L, 6L, 1L, 1L, 2L, 5L, 2L, 2L, 4L, 2L, 1L, 5L, 6L, 6L, 5L, 0L, 4L, 3L, 3L, 5L, 0L, 1L, 0L, 0L, 4L, 2L, 1L, 4L, 1L, 4L, 6L, 4L, 5L, 0L, 4L, 6L, 5L, 3L, 4L, 4L, 6L, 0L, 0L, 5L, 0L, 1L, 2L, 0L, 3L, 4L, 6L, 3L, 0L, 6L, 4L, 2L, 0L, 0L, 4L, 4L, 1L, 3L, 3L, 4L, 5L, 3L, 1L, 6L, 3L, 1L, 2L, 3L, 1L, 1L, 1L, 6L, 5L, 1L, 4L, 3L, 2L, 3L, 5L, 6L, 4L, 3L, 4L, 2L, 6L, 1L, 4L, 0L, 1L, 3L, 4L, 5L, 5L, 5L, 3L, 1L, 6L, 1L, 0L, 2L, 0L, 2L, 4L, 1L), p = 0:768,     Dim = c(7L, 768L), Dimnames = list(c("city_1", "city_2",     "city_3", "city_4", "city_5", "city_6", "city_7"), c("1",     "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12",     "13", "14", "15", "16", "17", "18", "19", "20", "21", "22",     "23", "24", "25", "26", "27", "28", "29", "30", "31", "32",     "33", "34", "35", "36", "37", "38", "39", "40", "41", "42",     "43", "44", "45", "46", "47", "48", "49", "50", "51", "52",     "53", "54", "55", "56", "57", "58", "59", "60", "61", "62",     "63", "64", "65", "66", "67", "68", "69", "70", "71", "72",     "73", "74", "75", "76", "77", "78", "79", "80", "81", "82",     "83", "84", "85", "86", "87", "88", "89", "90", "91", "92",     "93", "94", "95", "96", "97", "98", "99", "100", "101", "102",     "103", "104", "105", "106", "107", "108", "109", "110", "111",     "112", "113", "114", "115", "116", "117", "118", "119", "120",     "121", "122", "123", "124", "125", "126", "127", "128", "129",     "130", "131", "132", "133", "134", "135", "136", "137", "138",     "139", "140", "141", "142", "143", "144", "145", "146", "147",     "148", "149", "150", "151", "152", "153", "154", "155", "156",     "157", "158", "159", "160", "161", "162", "163", "164", "165",     "166", "167", "168", "169", "170", "171", "172", "173", "174",     "175", "176", "177", "178", "179", "180", "181", "182", "183",     "184", "185", "186", "187", "188", "189", "190", "191", "192",     "193", "194", "195", "196", "197", "198", "199", "200", "201",     "202", "203", "204", "205", "206", "207", "208", "209", "210",     "211", "212", "213", "214", "215", "216", "217", "218", "219",     "220", "221", "222", "223", "224", "225", "226", "227", "228",     "229", "230", "231", "232", "233", "234", "235", "236", "237",     "238", "239", "240", "241", "242", "243", "244", "245", "246",     "247", "248", "249", "250", "251", "252", "253", "254", "255",     "256", "257", "258", "259", "260", "261", "262", "263", "264",     "265", "266", "267", "268", "269", "270", "271", "272", "273",     "274", "275", "276", "277", "278", "279", "280", "281", "282",     "283", "284", "285", "286", "287", "288", "289", "290", "291",     "292", "293", "294", "295", "296", "297", "298", "299", "300",     "301", "302", "303", "304", "305", "306", "307", "308", "309",     "310", "311", "312", "313", "314", "315", "316", "317", "318",     "319", "320", "321", "322", "323", "324", "325", "326", "327",     "328", "329", "330", "331", "332", "333", "334", "335", "336",     "337", "338", "339", "340", "341", "342", "343", "344", "345",     "346", "347", "348", "349", "350", "351", "352", "353", "354",     "355", "356", "357", "358", "359", "360", "361", "362", "363",     "364", "365", "366", "367", "368", "369", "370", "371", "372",     "373", "374", "375", "376", "377", "378", "379", "380", "381",     "382", "383", "384", "385", "386", "387", "388", "389", "390",     "391", "392", "393", "394", "395", "396", "397", "398", "399",     "400", "401", "402", "403", "404", "405", "406", "407", "408",     "409", "410", "411", "412", "413", "414", "415", "416", "417",     "418", "419", "420", "421", "422", "423", "424", "425", "426",     "427", "428", "429", "430", "431", "432", "433", "434", "435",     "436", "437", "438", "439", "440", "441", "442", "443", "444",     "445", "446", "447", "448", "449", "450", "451", "452", "453",     "454", "455", "456", "457", "458", "459", "460", "461", "462",     "463", "464", "465", "466", "467", "468", "469", "470", "471",     "472", "473", "474", "475", "476", "477", "478", "479", "480",     "481", "482", "483", "484", "485", "486", "487", "488", "489",     "490", "491", "492", "493", "494", "495", "496", "497", "498",     "499", "500", "501", "502", "503", "504", "505", "506", "507",     "508", "509", "510", "511", "512", "513", "514", "515", "516",     "517", "518", "519", "520", "521", "522", "523", "524", "525",     "526", "527", "528", "529", "530", "531", "532", "533", "534",     "535", "536", "537", "538", "539", "540", "541", "542", "543",     "544", "545", "546", "547", "548", "549", "550", "551", "552",     "553", "554", "555", "556", "557", "558", "559", "560", "561",     "562", "563", "564", "565", "566", "567", "568", "569", "570",     "571", "572", "573", "574", "575", "576", "577", "578", "579",     "580", "581", "582", "583", "584", "585", "586", "587", "588",     "589", "590", "591", "592", "593", "594", "595", "596", "597",     "598", "599", "600", "601", "602", "603", "604", "605", "606",     "607", "608", "609", "610", "611", "612", "613", "614", "615",     "616", "617", "618", "619", "620", "621", "622", "623", "624",     "625", "626", "627", "628", "629", "630", "631", "632", "633",     "634", "635", "636", "637", "638", "639", "640", "641", "642",     "643", "644", "645", "646", "647", "648", "649", "650", "651",     "652", "653", "654", "655", "656", "657", "658", "659", "660",     "661", "662", "663", "664", "665", "666", "667", "668", "669",     "670", "671", "672", "673", "674", "675", "676", "677", "678",     "679", "680", "681", "682", "683", "684", "685", "686", "687",     "688", "689", "690", "691", "692", "693", "694", "695", "696",     "697", "698", "699", "700", "701", "702", "703", "704", "705",     "706", "707", "708", "709", "710", "711", "712", "713", "714",     "715", "716", "717", "718", "719", "720", "721", "722", "723",     "724", "725", "726", "727", "728", "729", "730", "731", "732",     "733", "734", "735", "736", "737", "738", "739", "740", "741",     "742", "743", "744", "745", "746", "747", "748", "749", "750",     "751", "752", "753", "754", "755", "756", "757", "758", "759",     "760", "761", "762", "763", "764", "765", "766", "767", "768"    )), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()), theta = 1,     Lambdat = new("dgCMatrix", i = 0:6, p = 0:7, Dim = c(7L,     7L), Dimnames = list(NULL, NULL), x = c(1, 1, 1, 1, 1, 1,     1), factors = list()), Lind = c(1L, 1L, 1L, 1L, 1L, 1L, 1L    ), n = 768L, X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1))
 8: do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")],     n = nrow(X), list(X = X)))
 9: (function (fr, X, reTrms, family, nAGQ = 1L, verbose = 0L, maxit = 100L,     control = glmerControl(), ...) {    stopifnot(length(nAGQ <- as.integer(nAGQ)) == 1L, 0L <= nAGQ,         nAGQ <= 25L)    verbose <- as.integer(verbose)    maxit <- as.integer(maxit)    rho <- list2env(list(verbose = verbose, maxit = maxit, tolPwrss = control$tolPwrss,         compDev = control$compDev), parent = parent.frame())    rho$pp <- do.call(merPredD$new, c(reTrms[c("Zt", "theta",         "Lambdat", "Lind")], n = nrow(X), list(X = X)))    rho$resp <- if (missing(fr))         mkRespMod(family = family, ...)    else mkRespMod(fr, family = family)    nAGQinit <- if (control$nAGQ0initStep)         0L    else 1L    if (length(y <- rho$resp$y) > 0) {        checkResponse(y, control$checkControl)        rho$verbose <- as.integer(verbose)        .Call(glmerLaplace, rho$pp$ptr(), rho$resp$ptr(), nAGQinit,             control$tolPwrss, maxit, verbose)        rho$lp0 <- rho$pp$linPred(1)        rho$pwrssUpdate <- glmerPwrssUpdate    }    rho$lower <- reTrms$lower    mkdevfun(rho, nAGQinit, maxit = maxit, verbose = verbose,         control = control)})(fr = list(diabetes = c(2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L), city = c(1L, 4L, 7L, 1L, 2L, 5L, 7L, 3L, 6L, 2L, 3L, 3L, 1L, 5L, 5L, 2L, 6L, 6L, 2L, 7L, 1L, 7L, 5L, 5L, 1L, 1L, 6L, 5L, 5L, 2L, 2L, 6L, 1L, 4L, 7L, 1L, 4L, 3L, 6L, 2L, 2L, 6L, 7L, 4L, 4L, 4L, 2L, 4L, 1L, 7L, 6L, 1L, 4L, 1L, 7L, 6L, 2L, 7L, 3L, 2L, 6L, 6L, 2L, 5L, 2L, 6L, 6L, 6L, 1L, 3L, 3L, 6L, 7L, 7L, 4L, 6L, 7L, 3L, 1L, 4L, 5L, 1L, 1L, 7L, 6L, 4L, 7L, 5L, 5L, 4L, 6L, 5L, 4L, 4L, 1L, 5L, 5L, 7L, 6L, 1L, 1L, 7L, 7L, 3L, 6L, 2L, 2L, 3L, 6L, 2L, 7L, 7L, 4L, 3L, 5L, 2L, 2L, 1L, 3L, 3L, 2L, 7L, 2L, 5L, 2L, 5L, 4L, 7L, 7L, 5L, 4L, 6L, 1L, 3L, 2L, 3L, 3L, 1L, 5L, 6L, 6L, 6L, 4L, 4L, 1L, 5L, 5L, 6L, 1L, 3L, 6L, 3L, 7L, 6L, 3L, 3L, 4L, 1L, 1L, 4L, 2L, 6L, 1L, 2L, 7L, 7L, 3L, 7L, 7L, 4L, 1L, 3L, 5L, 3L, 4L, 2L, 1L, 4L, 7L, 1L, 4L, 2L, 5L, 2L, 2L, 2L, 3L, 1L, 2L, 3L, 7L, 3L, 3L, 6L, 3L, 5L, 3L, 1L, 2L, 4L, 2L, 2L, 7L, 4L, 5L, 1L, 5L, 7L, 7L, 5L, 5L, 4L, 6L, 6L, 4L, 6L, 4L, 7L, 2L, 1L, 3L, 1L, 6L, 1L, 4L, 7L, 5L, 1L, 3L, 4L, 7L, 5L, 4L, 1L, 1L, 5L, 5L, 1L, 5L, 4L, 2L, 6L, 2L, 1L, 5L, 5L, 6L, 6L, 2L, 6L, 6L, 5L, 2L, 6L, 6L, 4L, 2L, 5L, 5L, 7L, 4L, 4L, 1L, 2L, 4L, 1L, 1L, 3L, 1L, 7L, 1L, 6L, 6L, 6L, 4L, 3L, 5L, 3L, 5L, 1L, 1L, 7L, 1L, 7L, 6L, 5L, 4L, 7L, 7L, 4L, 4L, 6L, 4L, 5L, 7L, 2L, 4L, 1L, 4L, 6L, 7L, 4L, 5L, 4L, 2L, 2L, 2L, 1L, 1L, 4L, 4L, 5L, 5L, 6L, 1L, 5L, 4L, 7L, 6L, 7L, 1L, 7L, 2L, 1L, 5L, 2L, 7L, 7L, 3L, 3L, 2L, 1L, 4L, 2L, 5L, 5L, 3L, 2L, 4L, 3L, 3L, 7L, 6L, 6L, 1L, 7L, 4L, 7L, 5L, 4L, 6L, 5L, 3L, 3L, 1L, 1L, 2L, 5L, 1L, 3L, 2L, 7L, 4L, 1L, 3L, 1L, 7L, 7L, 6L, 5L, 4L, 2L, 5L, 5L, 3L, 2L, 6L, 4L, 7L, 1L, 1L, 7L, 6L, 1L, 3L, 3L, 5L, 7L, 2L, 5L, 4L, 2L, 2L, 2L, 4L, 1L, 6L, 1L, 1L, 5L, 6L, 6L, 1L, 3L, 6L, 3L, 3L, 3L, 1L, 4L, 7L, 4L, 5L, 4L, 1L, 5L, 6L, 5L, 2L, 4L, 3L, 1L, 7L, 5L, 5L, 3L, 4L, 1L, 7L, 3L, 3L, 4L, 6L, 1L, 1L, 6L, 3L, 4L, 7L, 2L, 4L, 7L, 5L, 3L, 4L, 7L, 3L, 7L, 1L, 5L, 3L, 7L, 5L, 4L, 1L, 1L, 5L, 5L, 7L, 3L, 4L, 5L, 6L, 7L, 3L, 3L, 2L, 6L, 5L, 2L, 7L, 2L, 6L, 2L, 5L, 1L, 1L, 5L, 6L, 5L, 5L, 2L, 2L, 1L, 1L, 1L, 7L, 4L, 6L, 2L, 4L, 5L, 2L, 4L, 4L, 7L, 7L, 5L, 2L, 1L, 4L, 5L, 2L, 1L, 5L, 5L, 1L, 4L, 2L, 6L, 3L, 2L, 5L, 4L, 1L, 6L, 6L, 5L, 1L, 3L, 7L, 4L, 1L, 3L, 6L, 6L, 3L, 7L, 5L, 4L, 3L, 5L, 2L, 5L, 5L, 4L, 3L, 2L, 2L, 6L, 5L, 7L, 7L, 7L, 2L, 6L, 2L, 5L, 7L, 3L, 1L, 3L, 7L, 1L, 6L, 5L, 6L, 3L, 3L, 4L, 6L, 2L, 6L, 1L, 6L, 1L, 4L, 5L, 6L, 2L, 2L, 7L, 4L, 4L, 5L, 7L, 6L, 3L, 4L, 4L, 4L, 4L, 3L, 4L, 7L, 6L, 2L, 5L, 3L, 6L, 7L, 5L, 2L, 6L, 3L, 5L, 4L, 4L, 2L, 5L, 5L, 6L, 7L, 2L, 5L, 7L, 5L, 3L, 2L, 7L, 4L, 7L, 1L, 6L, 7L, 3L, 4L, 4L, 2L, 4L, 5L, 1L, 7L, 5L, 6L, 5L, 1L, 3L, 3L, 2L, 4L, 4L, 3L, 6L, 4L, 1L, 6L, 4L, 6L, 1L, 3L, 3L, 6L, 5L, 5L, 1L, 1L, 6L, 2L, 3L, 7L, 4L, 7L, 6L, 1L, 3L, 3L, 2L, 5L, 1L, 2L, 7L, 2L, 2L, 3L, 6L, 3L, 3L, 5L, 3L, 2L, 6L, 7L, 7L, 6L, 1L, 5L, 4L, 4L, 6L, 1L, 2L, 1L, 1L, 5L, 3L, 2L, 5L, 2L, 5L, 7L, 5L, 6L, 1L, 5L, 7L, 6L, 4L, 5L, 5L, 7L, 1L, 1L, 6L, 1L, 2L, 3L, 1L, 4L, 5L, 7L, 4L, 1L, 7L, 5L, 3L, 1L, 1L, 5L, 5L, 2L, 4L, 4L, 5L, 6L, 4L, 2L, 7L, 4L, 2L, 3L, 4L, 2L, 2L, 2L, 7L, 6L, 2L, 5L, 4L, 3L, 4L, 6L, 7L, 5L, 4L, 5L, 3L, 7L, 2L, 5L, 1L, 2L, 4L, 5L, 6L, 6L, 6L, 4L, 2L, 7L, 2L, 1L, 3L, 1L, 3L, 5L, 2L)), X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), reTrms = list(Zt = new("dgCMatrix", i = c(0L, 3L, 6L, 0L, 1L, 4L, 6L, 2L, 5L, 1L, 2L, 2L, 0L, 4L, 4L, 1L, 5L, 5L, 1L, 6L, 0L, 6L, 4L, 4L, 0L, 0L, 5L, 4L, 4L, 1L, 1L, 5L, 0L, 3L, 6L, 0L, 3L, 2L, 5L, 1L, 1L, 5L, 6L, 3L, 3L, 3L, 1L, 3L, 0L, 6L, 5L, 0L, 3L, 0L, 6L, 5L, 1L, 6L, 2L, 1L, 5L, 5L, 1L, 4L, 1L, 5L, 5L, 5L, 0L, 2L, 2L, 5L, 6L, 6L, 3L, 5L, 6L, 2L, 0L, 3L, 4L, 0L, 0L, 6L, 5L, 3L, 6L, 4L, 4L, 3L, 5L, 4L, 3L, 3L, 0L, 4L, 4L, 6L, 5L, 0L, 0L, 6L, 6L, 2L, 5L, 1L, 1L, 2L, 5L, 1L, 6L, 6L, 3L, 2L, 4L, 1L, 1L, 0L, 2L, 2L, 1L, 6L, 1L, 4L, 1L, 4L, 3L, 6L, 6L, 4L, 3L, 5L, 0L, 2L, 1L, 2L, 2L, 0L, 4L, 5L, 5L, 5L, 3L, 3L, 0L, 4L, 4L, 5L, 0L, 2L, 5L, 2L, 6L, 5L, 2L, 2L, 3L, 0L, 0L, 3L, 1L, 5L, 0L, 1L, 6L, 6L, 2L, 6L, 6L, 3L, 0L, 2L, 4L, 2L, 3L, 1L, 0L, 3L, 6L, 0L, 3L, 1L, 4L, 1L, 1L, 1L, 2L, 0L, 1L, 2L, 6L, 2L, 2L, 5L, 2L, 4L, 2L, 0L, 1L, 3L, 1L, 1L, 6L, 3L, 4L, 0L, 4L, 6L, 6L, 4L, 4L, 3L, 5L, 5L, 3L, 5L, 3L, 6L, 1L, 0L, 2L, 0L, 5L, 0L, 3L, 6L, 4L, 0L, 2L, 3L, 6L, 4L, 3L, 0L, 0L, 4L, 4L, 0L, 4L, 3L, 1L, 5L, 1L, 0L, 4L, 4L, 5L, 5L, 1L, 5L, 5L, 4L, 1L, 5L, 5L, 3L, 1L, 4L, 4L, 6L, 3L, 3L, 0L, 1L, 3L, 0L, 0L, 2L, 0L, 6L, 0L, 5L, 5L, 5L, 3L, 2L, 4L, 2L, 4L, 0L, 0L, 6L, 0L, 6L, 5L, 4L, 3L, 6L, 6L, 3L, 3L, 5L, 3L, 4L, 6L, 1L, 3L, 0L, 3L, 5L, 6L, 3L, 4L, 3L, 1L, 1L, 1L, 0L, 0L, 3L, 3L, 4L, 4L, 5L, 0L, 4L, 3L, 6L, 5L, 6L, 0L, 6L, 1L, 0L, 4L, 1L, 6L, 6L, 2L, 2L, 1L, 0L, 3L, 1L, 4L, 4L, 2L, 1L, 3L, 2L, 2L, 6L, 5L, 5L, 0L, 6L, 3L, 6L, 4L, 3L, 5L, 4L, 2L, 2L, 0L, 0L, 1L, 4L, 0L, 2L, 1L, 6L, 3L, 0L, 2L, 0L, 6L, 6L, 5L, 4L, 3L, 1L, 4L, 4L, 2L, 1L, 5L, 3L, 6L, 0L, 0L, 6L, 5L, 0L, 2L, 2L, 4L, 6L, 1L, 4L, 3L, 1L, 1L, 1L, 3L, 0L, 5L, 0L, 0L, 4L, 5L, 5L, 0L, 2L, 5L, 2L, 2L, 2L, 0L, 3L, 6L, 3L, 4L, 3L, 0L, 4L, 5L, 4L, 1L, 3L, 2L, 0L, 6L, 4L, 4L, 2L, 3L, 0L, 6L, 2L, 2L, 3L, 5L, 0L, 0L, 5L, 2L, 3L, 6L, 1L, 3L, 6L, 4L, 2L, 3L, 6L, 2L, 6L, 0L, 4L, 2L, 6L, 4L, 3L, 0L, 0L, 4L, 4L, 6L, 2L, 3L, 4L, 5L, 6L, 2L, 2L, 1L, 5L, 4L, 1L, 6L, 1L, 5L, 1L, 4L, 0L, 0L, 4L, 5L, 4L, 4L, 1L, 1L, 0L, 0L, 0L, 6L, 3L, 5L, 1L, 3L, 4L, 1L, 3L, 3L, 6L, 6L, 4L, 1L, 0L, 3L, 4L, 1L, 0L, 4L, 4L, 0L, 3L, 1L, 5L, 2L, 1L, 4L, 3L, 0L, 5L, 5L, 4L, 0L, 2L, 6L, 3L, 0L, 2L, 5L, 5L, 2L, 6L, 4L, 3L, 2L, 4L, 1L, 4L, 4L, 3L, 2L, 1L, 1L, 5L, 4L, 6L, 6L, 6L, 1L, 5L, 1L, 4L, 6L, 2L, 0L, 2L, 6L, 0L, 5L, 4L, 5L, 2L, 2L, 3L, 5L, 1L, 5L, 0L, 5L, 0L, 3L, 4L, 5L, 1L, 1L, 6L, 3L, 3L, 4L, 6L, 5L, 2L, 3L, 3L, 3L, 3L, 2L, 3L, 6L, 5L, 1L, 4L, 2L, 5L, 6L, 4L, 1L, 5L, 2L, 4L, 3L, 3L, 1L, 4L, 4L, 5L, 6L, 1L, 4L, 6L, 4L, 2L, 1L, 6L, 3L, 6L, 0L, 5L, 6L, 2L, 3L, 3L, 1L, 3L, 4L, 0L, 6L, 4L, 5L, 4L, 0L, 2L, 2L, 1L, 3L, 3L, 2L, 5L, 3L, 0L, 5L, 3L, 5L, 0L, 2L, 2L, 5L, 4L, 4L, 0L, 0L, 5L, 1L, 2L, 6L, 3L, 6L, 5L, 0L, 2L, 2L, 1L, 4L, 0L, 1L, 6L, 1L, 1L, 2L, 5L, 2L, 2L, 4L, 2L, 1L, 5L, 6L, 6L, 5L, 0L, 4L, 3L, 3L, 5L, 0L, 1L, 0L, 0L, 4L, 2L, 1L, 4L, 1L, 4L, 6L, 4L, 5L, 0L, 4L, 6L, 5L, 3L, 4L, 4L, 6L, 0L, 0L, 5L, 0L, 1L, 2L, 0L, 3L, 4L, 6L, 3L, 0L, 6L, 4L, 2L, 0L, 0L, 4L, 4L, 1L, 3L, 3L, 4L, 5L, 3L, 1L, 6L, 3L, 1L, 2L, 3L, 1L, 1L, 1L, 6L, 5L, 1L, 4L, 3L, 2L, 3L, 5L, 6L, 4L, 3L, 4L, 2L, 6L, 1L, 4L, 0L, 1L, 3L, 4L, 5L, 5L, 5L, 3L, 1L, 6L, 1L, 0L, 2L, 0L, 2L, 4L, 1L),     p = 0:768, Dim = c(7L, 768L), Dimnames = list(c("city_1",     "city_2", "city_3", "city_4", "city_5", "city_6", "city_7"    ), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11",     "12", "13", "14", "15", "16", "17", "18", "19", "20", "21",     "22", "23", "24", "25", "26", "27", "28", "29", "30", "31",     "32", "33", "34", "35", "36", "37", "38", "39", "40", "41",     "42", "43", "44", "45", "46", "47", "48", "49", "50", "51",     "52", "53", "54", "55", "56", "57", "58", "59", "60", "61",     "62", "63", "64", "65", "66", "67", "68", "69", "70", "71",     "72", "73", "74", "75", "76", "77", "78", "79", "80", "81",     "82", "83", "84", "85", "86", "87", "88", "89", "90", "91",     "92", "93", "94", "95", "96", "97", "98", "99", "100", "101",     "102", "103", "104", "105", "106", "107", "108", "109", "110",     "111", "112", "113", "114", "115", "116", "117", "118", "119",     "120", "121", "122", "123", "124", "125", "126", "127", "128",     "129", "130", "131", "132", "133", "134", "135", "136", "137",     "138", "139", "140", "141", "142", "143", "144", "145", "146",     "147", "148", "149", "150", "151", "152", "153", "154", "155",     "156", "157", "158", "159", "160", "161", "162", "163", "164",     "165", "166", "167", "168", "169", "170", "171", "172", "173",     "174", "175", "176", "177", "178", "179", "180", "181", "182",     "183", "184", "185", "186", "187", "188", "189", "190", "191",     "192", "193", "194", "195", "196", "197", "198", "199", "200",     "201", "202", "203", "204", "205", "206", "207", "208", "209",     "210", "211", "212", "213", "214", "215", "216", "217", "218",     "219", "220", "221", "222", "223", "224", "225", "226", "227",     "228", "229", "230", "231", "232", "233", "234", "235", "236",     "237", "238", "239", "240", "241", "242", "243", "244", "245",     "246", "247", "248", "249", "250", "251", "252", "253", "254",     "255", "256", "257", "258", "259", "260", "261", "262", "263",     "264", "265", "266", "267", "268", "269", "270", "271", "272",     "273", "274", "275", "276", "277", "278", "279", "280", "281",     "282", "283", "284", "285", "286", "287", "288", "289", "290",     "291", "292", "293", "294", "295", "296", "297", "298", "299",     "300", "301", "302", "303", "304", "305", "306", "307", "308",     "309", "310", "311", "312", "313", "314", "315", "316", "317",     "318", "319", "320", "321", "322", "323", "324", "325", "326",     "327", "328", "329", "330", "331", "332", "333", "334", "335",     "336", "337", "338", "339", "340", "341", "342", "343", "344",     "345", "346", "347", "348", "349", "350", "351", "352", "353",     "354", "355", "356", "357", "358", "359", "360", "361", "362",     "363", "364", "365", "366", "367", "368", "369", "370", "371",     "372", "373", "374", "375", "376", "377", "378", "379", "380",     "381", "382", "383", "384", "385", "386", "387", "388", "389",     "390", "391", "392", "393", "394", "395", "396", "397", "398",     "399", "400", "401", "402", "403", "404", "405", "406", "407",     "408", "409", "410", "411", "412", "413", "414", "415", "416",     "417", "418", "419", "420", "421", "422", "423", "424", "425",     "426", "427", "428", "429", "430", "431", "432", "433", "434",     "435", "436", "437", "438", "439", "440", "441", "442", "443",     "444", "445", "446", "447", "448", "449", "450", "451", "452",     "453", "454", "455", "456", "457", "458", "459", "460", "461",     "462", "463", "464", "465", "466", "467", "468", "469", "470",     "471", "472", "473", "474", "475", "476", "477", "478", "479",     "480", "481", "482", "483", "484", "485", "486", "487", "488",     "489", "490", "491", "492", "493", "494", "495", "496", "497",     "498", "499", "500", "501", "502", "503", "504", "505", "506",     "507", "508", "509", "510", "511", "512", "513", "514", "515",     "516", "517", "518", "519", "520", "521", "522", "523", "524",     "525", "526", "527", "528", "529", "530", "531", "532", "533",     "534", "535", "536", "537", "538", "539", "540", "541", "542",     "543", "544", "545", "546", "547", "548", "549", "550", "551",     "552", "553", "554", "555", "556", "557", "558", "559", "560",     "561", "562", "563", "564", "565", "566", "567", "568", "569",     "570", "571", "572", "573", "574", "575", "576", "577", "578",     "579", "580", "581", "582", "583", "584", "585", "586", "587",     "588", "589", "590", "591", "592", "593", "594", "595", "596",     "597", "598", "599", "600", "601", "602", "603", "604", "605",     "606", "607", "608", "609", "610", "611", "612", "613", "614",     "615", "616", "617", "618", "619", "620", "621", "622", "623",     "624", "625", "626", "627", "628", "629", "630", "631", "632",     "633", "634", "635", "636", "637", "638", "639", "640", "641",     "642", "643", "644", "645", "646", "647", "648", "649", "650",     "651", "652", "653", "654", "655", "656", "657", "658", "659",     "660", "661", "662", "663", "664", "665", "666", "667", "668",     "669", "670", "671", "672", "673", "674", "675", "676", "677",     "678", "679", "680", "681", "682", "683", "684", "685", "686",     "687", "688", "689", "690", "691", "692", "693", "694", "695",     "696", "697", "698", "699", "700", "701", "702", "703", "704",     "705", "706", "707", "708", "709", "710", "711", "712", "713",     "714", "715", "716", "717", "718", "719", "720", "721", "722",     "723", "724", "725", "726", "727", "728", "729", "730", "731",     "732", "733", "734", "735", "736", "737", "738", "739", "740",     "741", "742", "743", "744", "745", "746", "747", "748", "749",     "750", "751", "752", "753", "754", "755", "756", "757", "758",     "759", "760", "761", "762", "763", "764", "765", "766", "767",     "768")), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()),     theta = 1, Lind = c(1L, 1L, 1L, 1L, 1L, 1L, 1L), Gp = c(0L,     7L), lower = 0, Lambdat = new("dgCMatrix", i = 0:6, p = 0:7,         Dim = c(7L, 7L), Dimnames = list(NULL, NULL), x = c(1,         1, 1, 1, 1, 1, 1), factors = list()), flist = list(city = c(1L,     4L, 7L, 1L, 2L, 5L, 7L, 3L, 6L, 2L, 3L, 3L, 1L, 5L, 5L, 2L,     6L, 6L, 2L, 7L, 1L, 7L, 5L, 5L, 1L, 1L, 6L, 5L, 5L, 2L, 2L,     6L, 1L, 4L, 7L, 1L, 4L, 3L, 6L, 2L, 2L, 6L, 7L, 4L, 4L, 4L,     2L, 4L, 1L, 7L, 6L, 1L, 4L, 1L, 7L, 6L, 2L, 7L, 3L, 2L, 6L,     6L, 2L, 5L, 2L, 6L, 6L, 6L, 1L, 3L, 3L, 6L, 7L, 7L, 4L, 6L,     7L, 3L, 1L, 4L, 5L, 1L, 1L, 7L, 6L, 4L, 7L, 5L, 5L, 4L, 6L,     5L, 4L, 4L, 1L, 5L, 5L, 7L, 6L, 1L, 1L, 7L, 7L, 3L, 6L, 2L,     2L, 3L, 6L, 2L, 7L, 7L, 4L, 3L, 5L, 2L, 2L, 1L, 3L, 3L, 2L,     7L, 2L, 5L, 2L, 5L, 4L, 7L, 7L, 5L, 4L, 6L, 1L, 3L, 2L, 3L,     3L, 1L, 5L, 6L, 6L, 6L, 4L, 4L, 1L, 5L, 5L, 6L, 1L, 3L, 6L,     3L, 7L, 6L, 3L, 3L, 4L, 1L, 1L, 4L, 2L, 6L, 1L, 2L, 7L, 7L,     3L, 7L, 7L, 4L, 1L, 3L, 5L, 3L, 4L, 2L, 1L, 4L, 7L, 1L, 4L,     2L, 5L, 2L, 2L, 2L, 3L, 1L, 2L, 3L, 7L, 3L, 3L, 6L, 3L, 5L,     3L, 1L, 2L, 4L, 2L, 2L, 7L, 4L, 5L, 1L, 5L, 7L, 7L, 5L, 5L,     4L, 6L, 6L, 4L, 6L, 4L, 7L, 2L, 1L, 3L, 1L, 6L, 1L, 4L, 7L,     5L, 1L, 3L, 4L, 7L, 5L, 4L, 1L, 1L, 5L, 5L, 1L, 5L, 4L, 2L,     6L, 2L, 1L, 5L, 5L, 6L, 6L, 2L, 6L, 6L, 5L, 2L, 6L, 6L, 4L,     2L, 5L, 5L, 7L, 4L, 4L, 1L, 2L, 4L, 1L, 1L, 3L, 1L, 7L, 1L,     6L, 6L, 6L, 4L, 3L, 5L, 3L, 5L, 1L, 1L, 7L, 1L, 7L, 6L, 5L,     4L, 7L, 7L, 4L, 4L, 6L, 4L, 5L, 7L, 2L, 4L, 1L, 4L, 6L, 7L,     4L, 5L, 4L, 2L, 2L, 2L, 1L, 1L, 4L, 4L, 5L, 5L, 6L, 1L, 5L,     4L, 7L, 6L, 7L, 1L, 7L, 2L, 1L, 5L, 2L, 7L, 7L, 3L, 3L, 2L,     1L, 4L, 2L, 5L, 5L, 3L, 2L, 4L, 3L, 3L, 7L, 6L, 6L, 1L, 7L,     4L, 7L, 5L, 4L, 6L, 5L, 3L, 3L, 1L, 1L, 2L, 5L, 1L, 3L, 2L,     7L, 4L, 1L, 3L, 1L, 7L, 7L, 6L, 5L, 4L, 2L, 5L, 5L, 3L, 2L,     6L, 4L, 7L, 1L, 1L, 7L, 6L, 1L, 3L, 3L, 5L, 7L, 2L, 5L, 4L,     2L, 2L, 2L, 4L, 1L, 6L, 1L, 1L, 5L, 6L, 6L, 1L, 3L, 6L, 3L,     3L, 3L, 1L, 4L, 7L, 4L, 5L, 4L, 1L, 5L, 6L, 5L, 2L, 4L, 3L,     1L, 7L, 5L, 5L, 3L, 4L, 1L, 7L, 3L, 3L, 4L, 6L, 1L, 1L, 6L,     3L, 4L, 7L, 2L, 4L, 7L, 5L, 3L, 4L, 7L, 3L, 7L, 1L, 5L, 3L,     7L, 5L, 4L, 1L, 1L, 5L, 5L, 7L, 3L, 4L, 5L, 6L, 7L, 3L, 3L,     2L, 6L, 5L, 2L, 7L, 2L, 6L, 2L, 5L, 1L, 1L, 5L, 6L, 5L, 5L,     2L, 2L, 1L, 1L, 1L, 7L, 4L, 6L, 2L, 4L, 5L, 2L, 4L, 4L, 7L,     7L, 5L, 2L, 1L, 4L, 5L, 2L, 1L, 5L, 5L, 1L, 4L, 2L, 6L, 3L,     2L, 5L, 4L, 1L, 6L, 6L, 5L, 1L, 3L, 7L, 4L, 1L, 3L, 6L, 6L,     3L, 7L, 5L, 4L, 3L, 5L, 2L, 5L, 5L, 4L, 3L, 2L, 2L, 6L, 5L,     7L, 7L, 7L, 2L, 6L, 2L, 5L, 7L, 3L, 1L, 3L, 7L, 1L, 6L, 5L,     6L, 3L, 3L, 4L, 6L, 2L, 6L, 1L, 6L, 1L, 4L, 5L, 6L, 2L, 2L,     7L, 4L, 4L, 5L, 7L, 6L, 3L, 4L, 4L, 4L, 4L, 3L, 4L, 7L, 6L,     2L, 5L, 3L, 6L, 7L, 5L, 2L, 6L, 3L, 5L, 4L, 4L, 2L, 5L, 5L,     6L, 7L, 2L, 5L, 7L, 5L, 3L, 2L, 7L, 4L, 7L, 1L, 6L, 7L, 3L,     4L, 4L, 2L, 4L, 5L, 1L, 7L, 5L, 6L, 5L, 1L, 3L, 3L, 2L, 4L,     4L, 3L, 6L, 4L, 1L, 6L, 4L, 6L, 1L, 3L, 3L, 6L, 5L, 5L, 1L,     1L, 6L, 2L, 3L, 7L, 4L, 7L, 6L, 1L, 3L, 3L, 2L, 5L, 1L, 2L,     7L, 2L, 2L, 3L, 6L, 3L, 3L, 5L, 3L, 2L, 6L, 7L, 7L, 6L, 1L,     5L, 4L, 4L, 6L, 1L, 2L, 1L, 1L, 5L, 3L, 2L, 5L, 2L, 5L, 7L,     5L, 6L, 1L, 5L, 7L, 6L, 4L, 5L, 5L, 7L, 1L, 1L, 6L, 1L, 2L,     3L, 1L, 4L, 5L, 7L, 4L, 1L, 7L, 5L, 3L, 1L, 1L, 5L, 5L, 2L,     4L, 4L, 5L, 6L, 4L, 2L, 7L, 4L, 2L, 3L, 4L, 2L, 2L, 2L, 7L,     6L, 2L, 5L, 4L, 3L, 4L, 6L, 7L, 5L, 4L, 5L, 3L, 7L, 2L, 5L,     1L, 2L, 4L, 5L, 6L, 6L, 6L, 4L, 2L, 7L, 2L, 1L, 3L, 1L, 3L,     5L, 2L)), cnms = list(city = "(Intercept)"), Ztlist = list(        `1 | city` = new("dgCMatrix", i = c(0L, 3L, 6L, 0L, 1L,         4L, 6L, 2L, 5L, 1L, 2L, 2L, 0L, 4L, 4L, 1L, 5L, 5L, 1L,         6L, 0L, 6L, 4L, 4L, 0L, 0L, 5L, 4L, 4L, 1L, 1L, 5L, 0L,         3L, 6L, 0L, 3L, 2L, 5L, 1L, 1L, 5L, 6L, 3L, 3L, 3L, 1L,         3L, 0L, 6L, 5L, 0L, 3L, 0L, 6L, 5L, 1L, 6L, 2L, 1L, 5L,         5L, 1L, 4L, 1L, 5L, 5L, 5L, 0L, 2L, 2L, 5L, 6L, 6L, 3L,         5L, 6L, 2L, 0L, 3L, 4L, 0L, 0L, 6L, 5L, 3L, 6L, 4L, 4L,         3L, 5L, 4L, 3L, 3L, 0L, 4L, 4L, 6L, 5L, 0L, 0L, 6L, 6L,         2L, 5L, 1L, 1L, 2L, 5L, 1L, 6L, 6L, 3L, 2L, 4L, 1L, 1L,         0L, 2L, 2L, 1L, 6L, 1L, 4L, 1L, 4L, 3L, 6L, 6L, 4L, 3L,         5L, 0L, 2L, 1L, 2L, 2L, 0L, 4L, 5L, 5L, 5L, 3L, 3L, 0L,         4L, 4L, 5L, 0L, 2L, 5L, 2L, 6L, 5L, 2L, 2L, 3L, 0L, 0L,         3L, 1L, 5L, 0L, 1L, 6L, 6L, 2L, 6L, 6L, 3L, 0L, 2L, 4L,         2L, 3L, 1L, 0L, 3L, 6L, 0L, 3L, 1L, 4L, 1L, 1L, 1L, 2L,         0L, 1L, 2L, 6L, 2L, 2L, 5L, 2L, 4L, 2L, 0L, 1L, 3L, 1L,         1L, 6L, 3L, 4L, 0L, 4L, 6L, 6L, 4L, 4L, 3L, 5L, 5L, 3L,         5L, 3L, 6L, 1L, 0L, 2L, 0L, 5L, 0L, 3L, 6L, 4L, 0L, 2L,         3L, 6L, 4L, 3L, 0L, 0L, 4L, 4L, 0L, 4L, 3L, 1L, 5L, 1L,         0L, 4L, 4L, 5L, 5L, 1L, 5L, 5L, 4L, 1L, 5L, 5L, 3L, 1L,         4L, 4L, 6L, 3L, 3L, 0L, 1L, 3L, 0L, 0L, 2L, 0L, 6L, 0L,         5L, 5L, 5L, 3L, 2L, 4L, 2L, 4L, 0L, 0L, 6L, 0L, 6L, 5L,         4L, 3L, 6L, 6L, 3L, 3L, 5L, 3L, 4L, 6L, 1L, 3L, 0L, 3L,         5L, 6L, 3L, 4L, 3L, 1L, 1L, 1L, 0L, 0L, 3L, 3L, 4L, 4L,         5L, 0L, 4L, 3L, 6L, 5L, 6L, 0L, 6L, 1L, 0L, 4L, 1L, 6L,         6L, 2L, 2L, 1L, 0L, 3L, 1L, 4L, 4L, 2L, 1L, 3L, 2L, 2L,         6L, 5L, 5L, 0L, 6L, 3L, 6L, 4L, 3L, 5L, 4L, 2L, 2L, 0L,         0L, 1L, 4L, 0L, 2L, 1L, 6L, 3L, 0L, 2L, 0L, 6L, 6L, 5L,         4L, 3L, 1L, 4L, 4L, 2L, 1L, 5L, 3L, 6L, 0L, 0L, 6L, 5L,         0L, 2L, 2L, 4L, 6L, 1L, 4L, 3L, 1L, 1L, 1L, 3L, 0L, 5L,         0L, 0L, 4L, 5L, 5L, 0L, 2L, 5L, 2L, 2L, 2L, 0L, 3L, 6L,         3L, 4L, 3L, 0L, 4L, 5L, 4L, 1L, 3L, 2L, 0L, 6L, 4L, 4L,         2L, 3L, 0L, 6L, 2L, 2L, 3L, 5L, 0L, 0L, 5L, 2L, 3L, 6L,         1L, 3L, 6L, 4L, 2L, 3L, 6L, 2L, 6L, 0L, 4L, 2L, 6L, 4L,         3L, 0L, 0L, 4L, 4L, 6L, 2L, 3L, 4L, 5L, 6L, 2L, 2L, 1L,         5L, 4L, 1L, 6L, 1L, 5L, 1L, 4L, 0L, 0L, 4L, 5L, 4L, 4L,         1L, 1L, 0L, 0L, 0L, 6L, 3L, 5L, 1L, 3L, 4L, 1L, 3L, 3L,         6L, 6L, 4L, 1L, 0L, 3L, 4L, 1L, 0L, 4L, 4L, 0L, 3L, 1L,         5L, 2L, 1L, 4L, 3L, 0L, 5L, 5L, 4L, 0L, 2L, 6L, 3L, 0L,         2L, 5L, 5L, 2L, 6L, 4L, 3L, 2L, 4L, 1L, 4L, 4L, 3L, 2L,         1L, 1L, 5L, 4L, 6L, 6L, 6L, 1L, 5L, 1L, 4L, 6L, 2L, 0L,         2L, 6L, 0L, 5L, 4L, 5L, 2L, 2L, 3L, 5L, 1L, 5L, 0L, 5L,         0L, 3L, 4L, 5L, 1L, 1L, 6L, 3L, 3L, 4L, 6L, 5L, 2L, 3L,         3L, 3L, 3L, 2L, 3L, 6L, 5L, 1L, 4L, 2L, 5L, 6L, 4L, 1L,         5L, 2L, 4L, 3L, 3L, 1L, 4L, 4L, 5L, 6L, 1L, 4L, 6L, 4L,         2L, 1L, 6L, 3L, 6L, 0L, 5L, 6L, 2L, 3L, 3L, 1L, 3L, 4L,         0L, 6L, 4L, 5L, 4L, 0L, 2L, 2L, 1L, 3L, 3L, 2L, 5L, 3L,         0L, 5L, 3L, 5L, 0L, 2L, 2L, 5L, 4L, 4L, 0L, 0L, 5L, 1L,         2L, 6L, 3L, 6L, 5L, 0L, 2L, 2L, 1L, 4L, 0L, 1L, 6L, 1L,         1L, 2L, 5L, 2L, 2L, 4L, 2L, 1L, 5L, 6L, 6L, 5L, 0L, 4L,         3L, 3L, 5L, 0L, 1L, 0L, 0L, 4L, 2L, 1L, 4L, 1L, 4L, 6L,         4L, 5L, 0L, 4L, 6L, 5L, 3L, 4L, 4L, 6L, 0L, 0L, 5L, 0L,         1L, 2L, 0L, 3L, 4L, 6L, 3L, 0L, 6L, 4L, 2L, 0L, 0L, 4L,         4L, 1L, 3L, 3L, 4L, 5L, 3L, 1L, 6L, 3L, 1L, 2L, 3L, 1L,         1L, 1L, 6L, 5L, 1L, 4L, 3L, 2L, 3L, 5L, 6L, 4L, 3L, 4L,         2L, 6L, 1L, 4L, 0L, 1L, 3L, 4L, 5L, 5L, 5L, 3L, 1L, 6L,         1L, 0L, 2L, 0L, 2L, 4L, 1L), p = 0:768, Dim = c(7L, 768L        ), Dimnames = list(c("city_1", "city_2", "city_3", "city_4",         "city_5", "city_6", "city_7"), c("1", "2", "3", "4",         "5", "6", "7", "8", "9", "10", "11", "12", "13", "14",         "15", "16", "17", "18", "19", "20", "21", "22", "23",         "24", "25", "26", "27", "28", "29", "30", "31", "32",         "33", "34", "35", "36", "37", "38", "39", "40", "41",         "42", "43", "44", "45", "46", "47", "48", "49", "50",         "51", "52", "53", "54", "55", "56", "57", "58", "59",         "60", "61", "62", "63", "64", "65", "66", "67", "68",         "69", "70", "71", "72", "73", "74", "75", "76", "77",         "78", "79", "80", "81", "82", "83", "84", "85", "86",         "87", "88", "89", "90", "91", "92", "93", "94", "95",         "96", "97", "98", "99", "100", "101", "102", "103", "104",         "105", "106", "107", "108", "109", "110", "111", "112",         "113", "114", "115", "116", "117", "118", "119", "120",         "121", "122", "123", "124", "125", "126", "127", "128",         "129", "130", "131", "132", "133", "134", "135", "136",         "137", "138", "139", "140", "141", "142", "143", "144",         "145", "146", "147", "148", "149", "150", "151", "152",         "153", "154", "155", "156", "157", "158", "159", "160",         "161", "162", "163", "164", "165", "166", "167", "168",         "169", "170", "171", "172", "173", "174", "175", "176",         "177", "178", "179", "180", "181", "182", "183", "184",         "185", "186", "187", "188", "189", "190", "191", "192",         "193", "194", "195", "196", "197", "198", "199", "200",         "201", "202", "203", "204", "205", "206", "207", "208",         "209", "210", "211", "212", "213", "214", "215", "216",         "217", "218", "219", "220", "221", "222", "223", "224",         "225", "226", "227", "228", "229", "230", "231", "232",         "233", "234", "235", "236", "237", "238", "239", "240",         "241", "242", "243", "244", "245", "246", "247", "248",         "249", "250", "251", "252", "253", "254", "255", "256",         "257", "258", "259", "260", "261", "262", "263", "264",         "265", "266", "267", "268", "269", "270", "271", "272",         "273", "274", "275", "276", "277", "278", "279", "280",         "281", "282", "283", "284", "285", "286", "287", "288",         "289", "290", "291", "292", "293", "294", "295", "296",         "297", "298", "299", "300", "301", "302", "303", "304",         "305", "306", "307", "308", "309", "310", "311", "312",         "313", "314", "315", "316", "317", "318", "319", "320",         "321", "322", "323", "324", "325", "326", "327", "328",         "329", "330", "331", "332", "333", "334", "335", "336",         "337", "338", "339", "340", "341", "342", "343", "344",         "345", "346", "347", "348", "349", "350", "351", "352",         "353", "354", "355", "356", "357", "358", "359", "360",         "361", "362", "363", "364", "365", "366", "367", "368",         "369", "370", "371", "372", "373", "374", "375", "376",         "377", "378", "379", "380", "381", "382", "383", "384",         "385", "386", "387", "388", "389", "390", "391", "392",         "393", "394", "395", "396", "397", "398", "399", "400",         "401", "402", "403", "404", "405", "406", "407", "408",         "409", "410", "411", "412", "413", "414", "415", "416",         "417", "418", "419", "420", "421", "422", "423", "424",         "425", "426", "427", "428", "429", "430", "431", "432",         "433", "434", "435", "436", "437", "438", "439", "440",         "441", "442", "443", "444", "445", "446", "447", "448",         "449", "450", "451", "452", "453", "454", "455", "456",         "457", "458", "459", "460", "461", "462", "463", "464",         "465", "466", "467", "468", "469", "470", "471", "472",         "473", "474", "475", "476", "477", "478", "479", "480",         "481", "482", "483", "484", "485", "486", "487", "488",         "489", "490", "491", "492", "493", "494", "495", "496",         "497", "498", "499", "500", "501", "502", "503", "504",         "505", "506", "507", "508", "509", "510", "511", "512",         "513", "514", "515", "516", "517", "518", "519", "520",         "521", "522", "523", "524", "525", "526", "527", "528",         "529", "530", "531", "532", "533", "534", "535", "536",         "537", "538", "539", "540", "541", "542", "543", "544",         "545", "546", "547", "548", "549", "550", "551", "552",         "553", "554", "555", "556", "557", "558", "559", "560",         "561", "562", "563", "564", "565", "566", "567", "568",         "569", "570", "571", "572", "573", "574", "575", "576",         "577", "578", "579", "580", "581", "582", "583", "584",         "585", "586", "587", "588", "589", "590", "591", "592",         "593", "594", "595", "596", "597", "598", "599", "600",         "601", "602", "603", "604", "605", "606", "607", "608",         "609", "610", "611", "612", "613", "614", "615", "616",         "617", "618", "619", "620", "621", "622", "623", "624",         "625", "626", "627", "628", "629", "630", "631", "632",         "633", "634", "635", "636", "637", "638", "639", "640",         "641", "642", "643", "644", "645", "646", "647", "648",         "649", "650", "651", "652", "653", "654", "655", "656",         "657", "658", "659", "660", "661", "662", "663", "664",         "665", "666", "667", "668", "669", "670", "671", "672",         "673", "674", "675", "676", "677", "678", "679", "680",         "681", "682", "683", "684", "685", "686", "687", "688",         "689", "690", "691", "692", "693", "694", "695", "696",         "697", "698", "699", "700", "701", "702", "703", "704",         "705", "706", "707", "708", "709", "710", "711", "712",         "713", "714", "715", "716", "717", "718", "719", "720",         "721", "722", "723", "724", "725", "726", "727", "728",         "729", "730", "731", "732", "733", "734", "735", "736",         "737", "738", "739", "740", "741", "742", "743", "744",         "745", "746", "747", "748", "749", "750", "751", "752",         "753", "754", "755", "756", "757", "758", "759", "760",         "761", "762", "763", "764", "765", "766", "767", "768"        )), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list())),     nl = c(city = 7L)), family = list(family = "binomial", link = "logit",     linkfun = function (mu)     .Call(C_logit_link, mu), linkinv = function (eta)     .Call(C_logit_linkinv, eta), variance = function (mu)     mu * (1 - mu), dev.resids = function (y, mu, wt)     .Call(C_binomial_dev_resids, y, mu, wt), aic = function (y,         n, mu, wt, dev)     {        m <- if (any(n > 1))             n        else wt        -2 * sum(ifelse(m > 0, (wt/m), 0) * dbinom(round(m *             y), round(m), mu, log = TRUE))    }, mu.eta = function (eta)     .Call(C_logit_mu_eta, eta), initialize = {        if (NCOL(y) == 1) {            if (is.factor(y))                 y <- y != levels(y)[1L]            n <- rep.int(1, nobs)            y[weights == 0] <- 0            if (any(y < 0 | y > 1))                 stop("y values must be 0 <= y <= 1")            mustart <- (weights * y + 0.5)/(weights + 1)            m <- weights * y            if ("binomial" == "binomial" && any(abs(m - round(m)) >                 0.001))                 warning(gettextf("non-integer #successes in a %s glm!",                   "binomial"), domain = NA)        }        else if (NCOL(y) == 2) {            if ("binomial" == "binomial" && any(abs(y - round(y)) >                 0.001))                 warning(gettextf("non-integer counts in a %s glm!",                   "binomial"), domain = NA)            n <- (y1 <- y[, 1L]) + y[, 2L]            y <- y1/n            if (any(n0 <- n == 0))                 y[n0] <- 0            weights <- weights * n            mustart <- (n * y + 0.5)/(n + 1)        }        else stop(gettextf("for the '%s' family, y must be a vector of 0 and 1's\nor a 2 column matrix where col 1 is no. successes and col 2 is no. failures",             "binomial"), domain = NA)    }, validmu = function (mu)     all(is.finite(mu)) && all(mu > 0 & mu < 1), valideta = function (eta)     TRUE, simulate = function (object, nsim)     {        ftd <- fitted(object)        n <- length(ftd)        ntot <- n * nsim        wts <- object$prior.weights        if (any(wts%%1 != 0))             stop("cannot simulate from non-integer prior.weights")        if (!is.null(m <- object$model)) {            y <- model.response(m)            if (is.factor(y)) {                yy <- factor(1 + rbinom(ntot, size = 1, prob = ftd),                   labels = levels(y))                split(yy, rep(seq_len(nsim), each = n))            }            else if (is.matrix(y) && ncol(y) == 2) {                yy <- vector("list", nsim)                for (i in seq_len(nsim)) {                  Y <- rbinom(n, size = wts, prob = ftd)                  YY <- cbind(Y, wts - Y)                  colnames(YY) <- colnames(y)                  yy[[i]] <- YY                }                yy            }            else rbinom(ntot, size = wts, prob = ftd)/wts        }        else rbinom(ntot, size = wts, prob = ftd)/wts    }, dispersion = 1), wmsgs = character(0), verbose = 0L, control = list(    optimizer = c("bobyqa", "Nelder_Mead"), restart_edge = FALSE,     boundary.tol = 1e-05, calc.derivs = TRUE, use.last.params = FALSE,     checkControl = list(check.nobs.vs.rankZ = "ignore", check.nobs.vs.nlev = "stop",         check.nlev.gtreq.5 = "ignore", check.nlev.gtr.1 = "stop",         check.nobs.vs.nRE = "stop", check.rankX = "message+drop.cols",         check.scaleX = "warning", check.formula.LHS = "stop",         check.response.not.const = "stop"), checkConv = list(        check.conv.grad = list(action = "warning", tol = 0.002,             relTol = NULL), check.conv.singular = list(action = "message",             tol = 1e-04), check.conv.hess = list(action = "warning",             tol = 1e-06)), optCtrl = list(), tolPwrss = 1e-07,     compDev = TRUE, nAGQ0initStep = TRUE), nAGQ = 0L)
10: do.call(mkGlmerDevfun, c(glmod, list(verbose = verbose, control = control,     nAGQ = nAGQinit)))
11: lme4::glmer(diabetes ~ 1 + (1 | city), data = dataset, family = binomial(link = "logit"))
12: eval(expr, envir, enclos)
13: eval(expr, envir, enclos)
14: eval_with_user_handlers(expr, envir, enclos, user_handlers)
15: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers))
16: withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)
17: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler))
18: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)))
19: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,     debug = debug, last = i == length(out), use_try = stop_on_error !=         2L, keep_warning = keep_warning, keep_message = keep_message,     log_echo = log_echo, log_warning = log_warning, output_handler = output_handler,     include_timing = include_timing)
20: evaluate::evaluate(...)
21: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options))
22: in_dir(input_dir(), expr)
23: in_input_dir(evaluate(code, envir = env, new_device = FALSE,     keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options)))
24: eng_r(options)
25: block_exec(params)
26: call_block(x)
27: process_group(group)
28: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e))
29: withCallingHandlers(expr, error = function(e) {    loc = if (is.function(fun))         trimws(fun(label))    else ""    if (loc != "")         loc = sprintf(" at lines %s", loc)    message(one_string(handler(e, loc)))})
30: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)),     function(e, loc) {        setwd(wd)        write_utf8(res, output %n% stdout())        paste0("\nQuitting from lines ", loc)    }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
31: process_file(text, output)
32: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
33: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),     output_dir = getwd(), ...)
34: vweave_rmarkdown(...)
35: engine$weave(file, quiet = quiet, encoding = enc)
36: doTryCatch(return(expr), name, parentenv, handler)
37: tryCatchOne(expr, names, parentenv, handlers[[1L]])
38: tryCatchList(expr, classes, parentenv, handlers)
39: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }    outputs <- c(outputs, output)}, error = function(e) {    thisOK <<- FALSE    fails <<- c(fails, file)    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
40: tools::buildVignettes(dir = "/tmp/th798/16190367/R-release/1345/sjtable2df.Rcheck/vign_test/sjtable2df",     skip = TRUE, ser_elibs = "/tmp/th798/16190367/Rtmpv5CxGJ/file362a973bd572f9.rds")
An irrecoverable exception occurred. R is aborting now ...

* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  '/tmp/th798/16190367/R-release/1345/sjtable2df.Rcheck/00check.log'
for details.

[1] "2025-03-30 01:15:29 MST"
[1] "2025-03-30 01:15:29 MST"
Installing package into '/tmp/th798/16190367/R-release/1345/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/16190367/R-release/1345/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-03-30 01:15:51 MST"
* using log directory '/tmp/th798/16190367/R-release/1345/sjtable2df.Rcheck'
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'sjtable2df/DESCRIPTION' ... OK
* this is package 'sjtable2df' version '0.0.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'sjtable2df' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'/home/th798/R/R-release/bin/BATCH: line 60: 3555791 Segmentation fault      (core dumped) ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1

 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(sjtable2df)
  > 
  > test_check("sjtable2df")
  
   *** caught segfault ***
  address (nil), cause 'unknown'
  
  Traceback:
   1: .Call(merPredDCreate, as(X, "matrix"), Lambdat, LamtUt, Lind,     RZX, Ut, Utr, V, VtV, Vtr, Xwts, Zt, beta0, delb, delu, theta,     u0)
   2: initializePtr()
   3: .Object$initialize(...)
   4: initialize(value, ...)
   5: initialize(value, ...)
   6: methods::new(def, ...)
   7: (new("refMethodDef", .Data = function (...) {    methods::new(def, ...)}, mayCall = c("methods", "new"), name = "new", refClassName = "refGeneratorSlot",     superClassMethod = ""))(Zt = new("dgCMatrix", i = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), p = 0:100, Dim = c(4L, 100L), Dimnames = list(c("1", "2", "3", "4"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100")), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()), theta = 1, Lambdat = new("dgCMatrix",     i = 0:3, p = 0:4, Dim = c(4L, 4L), Dimnames = list(NULL,         NULL), x = c(1, 1, 1, 1), factors = list()), Lind = c(1L, 1L, 1L, 1L), n = 100L, X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 1, 0, 1, 1, 0, 0, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1, 0, 1, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 1, 0, 1, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1))
   8: do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")],     n = nrow(X), list(X = X)))
   9: (function (fr, X, reTrms, family, nAGQ = 1L, verbose = 0L, maxit = 100L,     control = glmerControl(), ...) {    stopifnot(length(nAGQ <- as.integer(nAGQ)) == 1L, 0L <= nAGQ,         nAGQ <= 25L)    verbose <- as.integer(verbose)    maxit <- as.integer(maxit)    rho <- list2env(list(verbose = verbose, maxit = maxit, tolPwrss = control$tolPwrss,         compDev = control$compDev), parent = parent.frame())    rho$pp <- do.call(merPredD$new, c(reTrms[c("Zt", "theta",         "Lambdat", "Lind")], n = nrow(X), list(X = X)))    rho$resp <- if (missing(fr))         mkRespMod(family = family, ...)    else mkRespMod(fr, family = family)    nAGQinit <- if (control$nAGQ0initStep)         0L    else 1L    if (length(y <- rho$resp$y) > 0) {        checkResponse(y, control$checkControl)        rho$verbose <- as.integer(verbose)        .Call(glmerLaplace, rho$pp$ptr(), rho$resp$ptr(), nAGQinit,             control$tolPwrss, maxit, verbose)        rho$lp0 <- rho$pp$linPred(1)        rho$pwrssUpdate <- glmerPwrssUpdate    }    rho$lower <- reTrms$lower    mkdevfun(rho, nAGQinit, maxit = maxit, verbose = verbose,         control = control)})(fr = list(var1 = c(1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 1L), var2 = c(1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L), var4 = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4, 4)), X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 1, 0, 1, 1, 0, 0, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1, 0, 1, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 1, 0, 1, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1), reTrms = list(Zt = new("dgCMatrix",     i = c(0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,     2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,     2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,     3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), p = 0:100,     Dim = c(4L, 100L), Dimnames = list(c("1", "2", "3", "4"),         c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10",         "11", "12", "13", "14", "15", "16", "17", "18", "19",         "20", "21", "22", "23", "24", "25", "26", "27", "28",         "29", "30", "31", "32", "33", "34", "35", "36", "37",         "38", "39", "40", "41", "42", "43", "44", "45", "46",         "47", "48", "49", "50", "51", "52", "53", "54", "55",         "56", "57", "58", "59", "60", "61", "62", "63", "64",         "65", "66", "67", "68", "69", "70", "71", "72", "73",         "74", "75", "76", "77", "78", "79", "80", "81", "82",         "83", "84", "85", "86", "87", "88", "89", "90", "91",         "92", "93", "94", "95", "96", "97", "98", "99", "100"        )), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()), theta = 1,     Lind = c(1L, 1L, 1L, 1L), Gp = c(0L, 4L), lower = 0, Lambdat = new("dgCMatrix",         i = 0:3, p = 0:4, Dim = c(4L, 4L), Dimnames = list(NULL,             NULL), x = c(1, 1, 1, 1), factors = list()), flist = list(        var4 = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,         1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,         2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,         2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L,         3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,         3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 4L, 4L, 4L, 4L, 4L, 4L,         4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L, 4L,         4L, 4L, 4L, 4L, 4L)), cnms = list(var4 = "(Intercept)"),     Ztlist = list(`1 | var4` = new("dgCMatrix", i = c(0L, 0L,     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,     1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,     1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,     2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L,     3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L,     3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), p = 0:100, Dim = c(4L, 100L    ), Dimnames = list(c("1", "2", "3", "4"), c("1", "2", "3",     "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14",     "15", "16", "17", "18", "19", "20", "21", "22", "23", "24",     "25", "26", "27", "28", "29", "30", "31", "32", "33", "34",     "35", "36", "37", "38", "39", "40", "41", "42", "43", "44",     "45", "46", "47", "48", "49", "50", "51", "52", "53", "54",     "55", "56", "57", "58", "59", "60", "61", "62", "63", "64",     "65", "66", "67", "68", "69", "70", "71", "72", "73", "74",     "75", "76", "77", "78", "79", "80", "81", "82", "83", "84",     "85", "86", "87", "88", "89", "90", "91", "92", "93", "94",     "95", "96", "97", "98", "99", "100")), x = c(1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1), factors = list())), nl = c(var4 = 4L)), family = list(    family = "binomial", link = "logit", linkfun = function (mu)     .Call(C_logit_link, mu), linkinv = function (eta)     .Call(C_logit_linkinv, eta), variance = function (mu)     mu * (1 - mu), dev.resids = function (y, mu, wt)     .Call(C_binomial_dev_resids, y, mu, wt), aic = function (y,         n, mu, wt, dev)     {        m <- if (any(n > 1))             n        else wt        -2 * sum(ifelse(m > 0, (wt/m), 0) * dbinom(round(m *             y), round(m), mu, log = TRUE))    }, mu.eta = function (eta)     .Call(C_logit_mu_eta, eta), initialize = {        if (NCOL(y) == 1) {            if (is.factor(y))                 y <- y != levels(y)[1L]            n <- rep.int(1, nobs)            y[weights == 0] <- 0            if (any(y < 0 | y > 1))                 stop("y values must be 0 <= y <= 1")            mustart <- (weights * y + 0.5)/(weights + 1)            m <- weights * y            if ("binomial" == "binomial" && any(abs(m - round(m)) >                 0.001))                 warning(gettextf("non-integer #successes in a %s glm!",                   "binomial"), domain = NA)        }        else if (NCOL(y) == 2) {            if ("binomial" == "binomial" && any(abs(y - round(y)) >                 0.001))                 warning(gettextf("non-integer counts in a %s glm!",                   "binomial"), domain = NA)            n <- (y1 <- y[, 1L]) + y[, 2L]            y <- y1/n            if (any(n0 <- n == 0))                 y[n0] <- 0            weights <- weights * n            mustart <- (n * y + 0.5)/(n + 1)        }        else stop(gettextf("for the '%s' family, y must be a vector of 0 and 1's\nor a 2 column matrix where col 1 is no. successes and col 2 is no. failures",             "binomial"), domain = NA)    }, validmu = function (mu)     all(is.finite(mu)) && all(mu > 0 & mu < 1), valideta = function (eta)     TRUE, simulate = function (object, nsim)     {        ftd <- fitted(object)        n <- length(ftd)        ntot <- n * nsim        wts <- object$prior.weights        if (any(wts%%1 != 0))             stop("cannot simulate from non-integer prior.weights")        if (!is.null(m <- object$model)) {            y <- model.response(m)            if (is.factor(y)) {                yy <- factor(1 + rbinom(ntot, size = 1, prob = ftd),                   labels = levels(y))                split(yy, rep(seq_len(nsim), each = n))            }            else if (is.matrix(y) && ncol(y) == 2) {                yy <- vector("list", nsim)                for (i in seq_len(nsim)) {                  Y <- rbinom(n, size = wts, prob = ftd)                  YY <- cbind(Y, wts - Y)                  colnames(YY) <- colnames(y)                  yy[[i]] <- YY                }                yy            }            else rbinom(ntot, size = wts, prob = ftd)/wts        }        else rbinom(ntot, size = wts, prob = ftd)/wts    }, dispersion = 1), wmsgs = character(0), verbose = 0L, control = list(    optimizer = c("bobyqa", "Nelder_Mead"), restart_edge = FALSE,     boundary.tol = 1e-05, calc.derivs = TRUE, use.last.params = FALSE,     checkControl = list(check.nobs.vs.rankZ = "ignore", check.nobs.vs.nlev = "stop",         check.nlev.gtreq.5 = "ignore", check.nlev.gtr.1 = "stop",         check.nobs.vs.nRE = "stop", check.rankX = "message+drop.cols",         check.scaleX = "warning", check.formula.LHS = "stop",         check.response.not.const = "stop"), checkConv = list(        check.conv.grad = list(action = "warning", tol = 0.002,             relTol = NULL), check.conv.singular = list(action = "message",             tol = 1e-04), check.conv.hess = list(action = "warning",             tol = 1e-06)), optCtrl = list(), tolPwrss = 1e-07,     compDev = TRUE, nAGQ0initStep = TRUE), nAGQ = 0L)
  10: do.call(mkGlmerDevfun, c(glmod, list(verbose = verbose, control = control,     nAGQ = nAGQinit)))
  11: lme4::glmer(var1 ~ var2 + (1 | var4), data = dataset, family = binomial(link = "logit"))
  12: eval(code, test_env)
  13: eval(code, test_env)
  14: withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error)
  15: doTryCatch(return(expr), name, parentenv, handler)
  16: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  17: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  18: doTryCatch(return(expr), name, parentenv, handler)
  19: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
  20: tryCatchList(expr, classes, parentenv, handlers)
  21: tryCatch(withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error), error = handle_fatal,     skip = function(e) {    })
  22: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter())
  23: test_that(desc = "correct functioning of mtab2df: glmer", code = {    local_edition(3)    set.seed(1)    dataset <- data.table::data.table(var1 = factor(sample(x = c("yes",         "no"), size = 100, replace = TRUE, prob = c(0.3, 0.7))),         var2 = factor(sample(x = c("yes", "no"), size = 100,             replace = TRUE)), var3 = rnorm(100), var4 = c(rep(1,             25), rep(2, 25), rep(3, 25), rep(4, 25)))    m1 <- lme4::glmer(var1 ~ var2 + (1 | var4), data = dataset,         family = binomial(link = "logit"))    m2 <- lme4::glmer(var1 ~ var2 + var3 + (1 | var4), data = dataset,         family = binomial(link = "logit"))    m_table <- sjPlot::tab_model(m1, m2, show.aic = TRUE)    final_tab <- sjtable2df::mtab2df(mtab = m_table, n_models = 2)    expect_type(final_tab, "list")    expect_true(inherits(final_tab, "data.table"))    expect_true(nrow(final_tab) == 10)    expect_snapshot_value(x = final_tab, style = "json2", cran = FALSE,         tolerance = 1, ignore_function_env = TRUE)    final_tab <- sjtable2df::mtab2df(mtab = m_table, n_models = 2,         output = "data.frame")    expect_type(final_tab, "list")    expect_true(inherits(final_tab, "data.frame"))    expect_snapshot_value(x = final_tab, style = "json2", cran = FALSE,         tolerance = 1, ignore_function_env = TRUE)    final_tab <- sjtable2df::mtab2df(mtab = m_table, n_models = 2,         output = "kable")    expect_type(final_tab, "character")    expect_true(inherits(final_tab, "knitr_kable"))    expect_snapshot_value(x = final_tab, style = "json2", cran = FALSE,         tolerance = 1, ignore_function_env = TRUE)})
  24: eval(code, test_env)
  25: eval(code, test_env)
  26: withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error)
  27: doTryCatch(return(expr), name, parentenv, handler)
  28: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  29: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  30: doTryCatch(return(expr), name, parentenv, handler)
  31: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),     names[nh], parentenv, handlers[[nh]])
  32: tryCatchList(expr, classes, parentenv, handlers)
  33: tryCatch(withCallingHandlers({    eval(code, test_env)    if (!handled && !is.null(test)) {        skip_empty()    }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,     message = handle_message, error = handle_error), error = handle_fatal,     skip = function(e) {    })
  34: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
  35: source_file(path, env = env(env), desc = desc, error_call = error_call)
  36: FUN(X[[i]], ...)
  37: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
  38: doTryCatch(return(expr), name, parentenv, handler)
  39: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  40: tryCatchList(expr, classes, parentenv, handlers)
  41: tryCatch(code, testthat_abort_reporter = function(cnd) {    cat(conditionMessage(cnd), "\n")    NULL})
  42: with_reporter(reporters$multi, lapply(test_paths, test_one_file,     env = env, desc = desc, error_call = error_call))
  43: test_files_serial(test_dir = test_dir, test_package = test_package,     test_paths = test_paths, load_helpers = load_helpers, reporter = reporter,     env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     desc = desc, load_package = load_package, error_call = error_call)
  44: test_files(test_dir = path, test_paths = test_paths, test_package = package,     reporter = reporter, load_helpers = load_helpers, env = env,     stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,     load_package = load_package, parallel = parallel)
  45: test_dir("testthat", package = package, reporter = reporter,     ..., load_package = "installed")
  46: test_check("sjtable2df")
  An irrecoverable exception occurred. R is aborting now ...
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ...sh: line 1: 3556066 Segmentation fault      (core dumped) '/home/th798/R/R-release/bin/R' --vanilla --no-echo > '/tmp/th798/16190367/R-release/1345/sjtable2df.Rcheck/build_vignettes.log' 2>&1 < '/tmp/th798/16190367/RtmpPoWyVY/file363b5d2859bdc1'
 ERROR
Error(s) in re-building vignettes:
--- re-building 'sjtable2df_overview.Rmd' using rmarkdown

 *** caught segfault ***
address (nil), cause 'unknown'

Traceback:
 1: .Call(merPredDCreate, as(X, "matrix"), Lambdat, LamtUt, Lind,     RZX, Ut, Utr, V, VtV, Vtr, Xwts, Zt, beta0, delb, delu, theta,     u0)
 2: initializePtr()
 3: .Object$initialize(...)
 4: initialize(value, ...)
 5: initialize(value, ...)
 6: methods::new(def, ...)
 7: (new("refMethodDef", .Data = function (...) {    methods::new(def, ...)}, mayCall = c("methods", "new"), name = "new", refClassName = "refGeneratorSlot",     superClassMethod = ""))(Zt = new("dgCMatrix", i = c(0L, 3L, 6L, 0L, 1L, 4L, 6L, 2L, 5L, 1L, 2L, 2L, 0L, 4L, 4L, 1L, 5L, 5L, 1L, 6L, 0L, 6L, 4L, 4L, 0L, 0L, 5L, 4L, 4L, 1L, 1L, 5L, 0L, 3L, 6L, 0L, 3L, 2L, 5L, 1L, 1L, 5L, 6L, 3L, 3L, 3L, 1L, 3L, 0L, 6L, 5L, 0L, 3L, 0L, 6L, 5L, 1L, 6L, 2L, 1L, 5L, 5L, 1L, 4L, 1L, 5L, 5L, 5L, 0L, 2L, 2L, 5L, 6L, 6L, 3L, 5L, 6L, 2L, 0L, 3L, 4L, 0L, 0L, 6L, 5L, 3L, 6L, 4L, 4L, 3L, 5L, 4L, 3L, 3L, 0L, 4L, 4L, 6L, 5L, 0L, 0L, 6L, 6L, 2L, 5L, 1L, 1L, 2L, 5L, 1L, 6L, 6L, 3L, 2L, 4L, 1L, 1L, 0L, 2L, 2L, 1L, 6L, 1L, 4L, 1L, 4L, 3L, 6L, 6L, 4L, 3L, 5L, 0L, 2L, 1L, 2L, 2L, 0L, 4L, 5L, 5L, 5L, 3L, 3L, 0L, 4L, 4L, 5L, 0L, 2L, 5L, 2L, 6L, 5L, 2L, 2L, 3L, 0L, 0L, 3L, 1L, 5L, 0L, 1L, 6L, 6L, 2L, 6L, 6L, 3L, 0L, 2L, 4L, 2L, 3L, 1L, 0L, 3L, 6L, 0L, 3L, 1L, 4L, 1L, 1L, 1L, 2L, 0L, 1L, 2L, 6L, 2L, 2L, 5L, 2L, 4L, 2L, 0L, 1L, 3L, 1L, 1L, 6L, 3L, 4L, 0L, 4L, 6L, 6L, 4L, 4L, 3L, 5L, 5L, 3L, 5L, 3L, 6L, 1L, 0L, 2L, 0L, 5L, 0L, 3L, 6L, 4L, 0L, 2L, 3L, 6L, 4L, 3L, 0L, 0L, 4L, 4L, 0L, 4L, 3L, 1L, 5L, 1L, 0L, 4L, 4L, 5L, 5L, 1L, 5L, 5L, 4L, 1L, 5L, 5L, 3L, 1L, 4L, 4L, 6L, 3L, 3L, 0L, 1L, 3L, 0L, 0L, 2L, 0L, 6L, 0L, 5L, 5L, 5L, 3L, 2L, 4L, 2L, 4L, 0L, 0L, 6L, 0L, 6L, 5L, 4L, 3L, 6L, 6L, 3L, 3L, 5L, 3L, 4L, 6L, 1L, 3L, 0L, 3L, 5L, 6L, 3L, 4L, 3L, 1L, 1L, 1L, 0L, 0L, 3L, 3L, 4L, 4L, 5L, 0L, 4L, 3L, 6L, 5L, 6L, 0L, 6L, 1L, 0L, 4L, 1L, 6L, 6L, 2L, 2L, 1L, 0L, 3L, 1L, 4L, 4L, 2L, 1L, 3L, 2L, 2L, 6L, 5L, 5L, 0L, 6L, 3L, 6L, 4L, 3L, 5L, 4L, 2L, 2L, 0L, 0L, 1L, 4L, 0L, 2L, 1L, 6L, 3L, 0L, 2L, 0L, 6L, 6L, 5L, 4L, 3L, 1L, 4L, 4L, 2L, 1L, 5L, 3L, 6L, 0L, 0L, 6L, 5L, 0L, 2L, 2L, 4L, 6L, 1L, 4L, 3L, 1L, 1L, 1L, 3L, 0L, 5L, 0L, 0L, 4L, 5L, 5L, 0L, 2L, 5L, 2L, 2L, 2L, 0L, 3L, 6L, 3L, 4L, 3L, 0L, 4L, 5L, 4L, 1L, 3L, 2L, 0L, 6L, 4L, 4L, 2L, 3L, 0L, 6L, 2L, 2L, 3L, 5L, 0L, 0L, 5L, 2L, 3L, 6L, 1L, 3L, 6L, 4L, 2L, 3L, 6L, 2L, 6L, 0L, 4L, 2L, 6L, 4L, 3L, 0L, 0L, 4L, 4L, 6L, 2L, 3L, 4L, 5L, 6L, 2L, 2L, 1L, 5L, 4L, 1L, 6L, 1L, 5L, 1L, 4L, 0L, 0L, 4L, 5L, 4L, 4L, 1L, 1L, 0L, 0L, 0L, 6L, 3L, 5L, 1L, 3L, 4L, 1L, 3L, 3L, 6L, 6L, 4L, 1L, 0L, 3L, 4L, 1L, 0L, 4L, 4L, 0L, 3L, 1L, 5L, 2L, 1L, 4L, 3L, 0L, 5L, 5L, 4L, 0L, 2L, 6L, 3L, 0L, 2L, 5L, 5L, 2L, 6L, 4L, 3L, 2L, 4L, 1L, 4L, 4L, 3L, 2L, 1L, 1L, 5L, 4L, 6L, 6L, 6L, 1L, 5L, 1L, 4L, 6L, 2L, 0L, 2L, 6L, 0L, 5L, 4L, 5L, 2L, 2L, 3L, 5L, 1L, 5L, 0L, 5L, 0L, 3L, 4L, 5L, 1L, 1L, 6L, 3L, 3L, 4L, 6L, 5L, 2L, 3L, 3L, 3L, 3L, 2L, 3L, 6L, 5L, 1L, 4L, 2L, 5L, 6L, 4L, 1L, 5L, 2L, 4L, 3L, 3L, 1L, 4L, 4L, 5L, 6L, 1L, 4L, 6L, 4L, 2L, 1L, 6L, 3L, 6L, 0L, 5L, 6L, 2L, 3L, 3L, 1L, 3L, 4L, 0L, 6L, 4L, 5L, 4L, 0L, 2L, 2L, 1L, 3L, 3L, 2L, 5L, 3L, 0L, 5L, 3L, 5L, 0L, 2L, 2L, 5L, 4L, 4L, 0L, 0L, 5L, 1L, 2L, 6L, 3L, 6L, 5L, 0L, 2L, 2L, 1L, 4L, 0L, 1L, 6L, 1L, 1L, 2L, 5L, 2L, 2L, 4L, 2L, 1L, 5L, 6L, 6L, 5L, 0L, 4L, 3L, 3L, 5L, 0L, 1L, 0L, 0L, 4L, 2L, 1L, 4L, 1L, 4L, 6L, 4L, 5L, 0L, 4L, 6L, 5L, 3L, 4L, 4L, 6L, 0L, 0L, 5L, 0L, 1L, 2L, 0L, 3L, 4L, 6L, 3L, 0L, 6L, 4L, 2L, 0L, 0L, 4L, 4L, 1L, 3L, 3L, 4L, 5L, 3L, 1L, 6L, 3L, 1L, 2L, 3L, 1L, 1L, 1L, 6L, 5L, 1L, 4L, 3L, 2L, 3L, 5L, 6L, 4L, 3L, 4L, 2L, 6L, 1L, 4L, 0L, 1L, 3L, 4L, 5L, 5L, 5L, 3L, 1L, 6L, 1L, 0L, 2L, 0L, 2L, 4L, 1L), p = 0:768,     Dim = c(7L, 768L), Dimnames = list(c("city_1", "city_2",     "city_3", "city_4", "city_5", "city_6", "city_7"), c("1",     "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12",     "13", "14", "15", "16", "17", "18", "19", "20", "21", "22",     "23", "24", "25", "26", "27", "28", "29", "30", "31", "32",     "33", "34", "35", "36", "37", "38", "39", "40", "41", "42",     "43", "44", "45", "46", "47", "48", "49", "50", "51", "52",     "53", "54", "55", "56", "57", "58", "59", "60", "61", "62",     "63", "64", "65", "66", "67", "68", "69", "70", "71", "72",     "73", "74", "75", "76", "77", "78", "79", "80", "81", "82",     "83", "84", "85", "86", "87", "88", "89", "90", "91", "92",     "93", "94", "95", "96", "97", "98", "99", "100", "101", "102",     "103", "104", "105", "106", "107", "108", "109", "110", "111",     "112", "113", "114", "115", "116", "117", "118", "119", "120",     "121", "122", "123", "124", "125", "126", "127", "128", "129",     "130", "131", "132", "133", "134", "135", "136", "137", "138",     "139", "140", "141", "142", "143", "144", "145", "146", "147",     "148", "149", "150", "151", "152", "153", "154", "155", "156",     "157", "158", "159", "160", "161", "162", "163", "164", "165",     "166", "167", "168", "169", "170", "171", "172", "173", "174",     "175", "176", "177", "178", "179", "180", "181", "182", "183",     "184", "185", "186", "187", "188", "189", "190", "191", "192",     "193", "194", "195", "196", "197", "198", "199", "200", "201",     "202", "203", "204", "205", "206", "207", "208", "209", "210",     "211", "212", "213", "214", "215", "216", "217", "218", "219",     "220", "221", "222", "223", "224", "225", "226", "227", "228",     "229", "230", "231", "232", "233", "234", "235", "236", "237",     "238", "239", "240", "241", "242", "243", "244", "245", "246",     "247", "248", "249", "250", "251", "252", "253", "254", "255",     "256", "257", "258", "259", "260", "261", "262", "263", "264",     "265", "266", "267", "268", "269", "270", "271", "272", "273",     "274", "275", "276", "277", "278", "279", "280", "281", "282",     "283", "284", "285", "286", "287", "288", "289", "290", "291",     "292", "293", "294", "295", "296", "297", "298", "299", "300",     "301", "302", "303", "304", "305", "306", "307", "308", "309",     "310", "311", "312", "313", "314", "315", "316", "317", "318",     "319", "320", "321", "322", "323", "324", "325", "326", "327",     "328", "329", "330", "331", "332", "333", "334", "335", "336",     "337", "338", "339", "340", "341", "342", "343", "344", "345",     "346", "347", "348", "349", "350", "351", "352", "353", "354",     "355", "356", "357", "358", "359", "360", "361", "362", "363",     "364", "365", "366", "367", "368", "369", "370", "371", "372",     "373", "374", "375", "376", "377", "378", "379", "380", "381",     "382", "383", "384", "385", "386", "387", "388", "389", "390",     "391", "392", "393", "394", "395", "396", "397", "398", "399",     "400", "401", "402", "403", "404", "405", "406", "407", "408",     "409", "410", "411", "412", "413", "414", "415", "416", "417",     "418", "419", "420", "421", "422", "423", "424", "425", "426",     "427", "428", "429", "430", "431", "432", "433", "434", "435",     "436", "437", "438", "439", "440", "441", "442", "443", "444",     "445", "446", "447", "448", "449", "450", "451", "452", "453",     "454", "455", "456", "457", "458", "459", "460", "461", "462",     "463", "464", "465", "466", "467", "468", "469", "470", "471",     "472", "473", "474", "475", "476", "477", "478", "479", "480",     "481", "482", "483", "484", "485", "486", "487", "488", "489",     "490", "491", "492", "493", "494", "495", "496", "497", "498",     "499", "500", "501", "502", "503", "504", "505", "506", "507",     "508", "509", "510", "511", "512", "513", "514", "515", "516",     "517", "518", "519", "520", "521", "522", "523", "524", "525",     "526", "527", "528", "529", "530", "531", "532", "533", "534",     "535", "536", "537", "538", "539", "540", "541", "542", "543",     "544", "545", "546", "547", "548", "549", "550", "551", "552",     "553", "554", "555", "556", "557", "558", "559", "560", "561",     "562", "563", "564", "565", "566", "567", "568", "569", "570",     "571", "572", "573", "574", "575", "576", "577", "578", "579",     "580", "581", "582", "583", "584", "585", "586", "587", "588",     "589", "590", "591", "592", "593", "594", "595", "596", "597",     "598", "599", "600", "601", "602", "603", "604", "605", "606",     "607", "608", "609", "610", "611", "612", "613", "614", "615",     "616", "617", "618", "619", "620", "621", "622", "623", "624",     "625", "626", "627", "628", "629", "630", "631", "632", "633",     "634", "635", "636", "637", "638", "639", "640", "641", "642",     "643", "644", "645", "646", "647", "648", "649", "650", "651",     "652", "653", "654", "655", "656", "657", "658", "659", "660",     "661", "662", "663", "664", "665", "666", "667", "668", "669",     "670", "671", "672", "673", "674", "675", "676", "677", "678",     "679", "680", "681", "682", "683", "684", "685", "686", "687",     "688", "689", "690", "691", "692", "693", "694", "695", "696",     "697", "698", "699", "700", "701", "702", "703", "704", "705",     "706", "707", "708", "709", "710", "711", "712", "713", "714",     "715", "716", "717", "718", "719", "720", "721", "722", "723",     "724", "725", "726", "727", "728", "729", "730", "731", "732",     "733", "734", "735", "736", "737", "738", "739", "740", "741",     "742", "743", "744", "745", "746", "747", "748", "749", "750",     "751", "752", "753", "754", "755", "756", "757", "758", "759",     "760", "761", "762", "763", "764", "765", "766", "767", "768"    )), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()), theta = 1,     Lambdat = new("dgCMatrix", i = 0:6, p = 0:7, Dim = c(7L,     7L), Dimnames = list(NULL, NULL), x = c(1, 1, 1, 1, 1, 1,     1), factors = list()), Lind = c(1L, 1L, 1L, 1L, 1L, 1L, 1L    ), n = 768L, X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1))
 8: do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")],     n = nrow(X), list(X = X)))
 9: (function (fr, X, reTrms, family, nAGQ = 1L, verbose = 0L, maxit = 100L,     control = glmerControl(), ...) {    stopifnot(length(nAGQ <- as.integer(nAGQ)) == 1L, 0L <= nAGQ,         nAGQ <= 25L)    verbose <- as.integer(verbose)    maxit <- as.integer(maxit)    rho <- list2env(list(verbose = verbose, maxit = maxit, tolPwrss = control$tolPwrss,         compDev = control$compDev), parent = parent.frame())    rho$pp <- do.call(merPredD$new, c(reTrms[c("Zt", "theta",         "Lambdat", "Lind")], n = nrow(X), list(X = X)))    rho$resp <- if (missing(fr))         mkRespMod(family = family, ...)    else mkRespMod(fr, family = family)    nAGQinit <- if (control$nAGQ0initStep)         0L    else 1L    if (length(y <- rho$resp$y) > 0) {        checkResponse(y, control$checkControl)        rho$verbose <- as.integer(verbose)        .Call(glmerLaplace, rho$pp$ptr(), rho$resp$ptr(), nAGQinit,             control$tolPwrss, maxit, verbose)        rho$lp0 <- rho$pp$linPred(1)        rho$pwrssUpdate <- glmerPwrssUpdate    }    rho$lower <- reTrms$lower    mkdevfun(rho, nAGQinit, maxit = maxit, verbose = verbose,         control = control)})(fr = list(diabetes = c(2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 1L), city = c(1L, 4L, 7L, 1L, 2L, 5L, 7L, 3L, 6L, 2L, 3L, 3L, 1L, 5L, 5L, 2L, 6L, 6L, 2L, 7L, 1L, 7L, 5L, 5L, 1L, 1L, 6L, 5L, 5L, 2L, 2L, 6L, 1L, 4L, 7L, 1L, 4L, 3L, 6L, 2L, 2L, 6L, 7L, 4L, 4L, 4L, 2L, 4L, 1L, 7L, 6L, 1L, 4L, 1L, 7L, 6L, 2L, 7L, 3L, 2L, 6L, 6L, 2L, 5L, 2L, 6L, 6L, 6L, 1L, 3L, 3L, 6L, 7L, 7L, 4L, 6L, 7L, 3L, 1L, 4L, 5L, 1L, 1L, 7L, 6L, 4L, 7L, 5L, 5L, 4L, 6L, 5L, 4L, 4L, 1L, 5L, 5L, 7L, 6L, 1L, 1L, 7L, 7L, 3L, 6L, 2L, 2L, 3L, 6L, 2L, 7L, 7L, 4L, 3L, 5L, 2L, 2L, 1L, 3L, 3L, 2L, 7L, 2L, 5L, 2L, 5L, 4L, 7L, 7L, 5L, 4L, 6L, 1L, 3L, 2L, 3L, 3L, 1L, 5L, 6L, 6L, 6L, 4L, 4L, 1L, 5L, 5L, 6L, 1L, 3L, 6L, 3L, 7L, 6L, 3L, 3L, 4L, 1L, 1L, 4L, 2L, 6L, 1L, 2L, 7L, 7L, 3L, 7L, 7L, 4L, 1L, 3L, 5L, 3L, 4L, 2L, 1L, 4L, 7L, 1L, 4L, 2L, 5L, 2L, 2L, 2L, 3L, 1L, 2L, 3L, 7L, 3L, 3L, 6L, 3L, 5L, 3L, 1L, 2L, 4L, 2L, 2L, 7L, 4L, 5L, 1L, 5L, 7L, 7L, 5L, 5L, 4L, 6L, 6L, 4L, 6L, 4L, 7L, 2L, 1L, 3L, 1L, 6L, 1L, 4L, 7L, 5L, 1L, 3L, 4L, 7L, 5L, 4L, 1L, 1L, 5L, 5L, 1L, 5L, 4L, 2L, 6L, 2L, 1L, 5L, 5L, 6L, 6L, 2L, 6L, 6L, 5L, 2L, 6L, 6L, 4L, 2L, 5L, 5L, 7L, 4L, 4L, 1L, 2L, 4L, 1L, 1L, 3L, 1L, 7L, 1L, 6L, 6L, 6L, 4L, 3L, 5L, 3L, 5L, 1L, 1L, 7L, 1L, 7L, 6L, 5L, 4L, 7L, 7L, 4L, 4L, 6L, 4L, 5L, 7L, 2L, 4L, 1L, 4L, 6L, 7L, 4L, 5L, 4L, 2L, 2L, 2L, 1L, 1L, 4L, 4L, 5L, 5L, 6L, 1L, 5L, 4L, 7L, 6L, 7L, 1L, 7L, 2L, 1L, 5L, 2L, 7L, 7L, 3L, 3L, 2L, 1L, 4L, 2L, 5L, 5L, 3L, 2L, 4L, 3L, 3L, 7L, 6L, 6L, 1L, 7L, 4L, 7L, 5L, 4L, 6L, 5L, 3L, 3L, 1L, 1L, 2L, 5L, 1L, 3L, 2L, 7L, 4L, 1L, 3L, 1L, 7L, 7L, 6L, 5L, 4L, 2L, 5L, 5L, 3L, 2L, 6L, 4L, 7L, 1L, 1L, 7L, 6L, 1L, 3L, 3L, 5L, 7L, 2L, 5L, 4L, 2L, 2L, 2L, 4L, 1L, 6L, 1L, 1L, 5L, 6L, 6L, 1L, 3L, 6L, 3L, 3L, 3L, 1L, 4L, 7L, 4L, 5L, 4L, 1L, 5L, 6L, 5L, 2L, 4L, 3L, 1L, 7L, 5L, 5L, 3L, 4L, 1L, 7L, 3L, 3L, 4L, 6L, 1L, 1L, 6L, 3L, 4L, 7L, 2L, 4L, 7L, 5L, 3L, 4L, 7L, 3L, 7L, 1L, 5L, 3L, 7L, 5L, 4L, 1L, 1L, 5L, 5L, 7L, 3L, 4L, 5L, 6L, 7L, 3L, 3L, 2L, 6L, 5L, 2L, 7L, 2L, 6L, 2L, 5L, 1L, 1L, 5L, 6L, 5L, 5L, 2L, 2L, 1L, 1L, 1L, 7L, 4L, 6L, 2L, 4L, 5L, 2L, 4L, 4L, 7L, 7L, 5L, 2L, 1L, 4L, 5L, 2L, 1L, 5L, 5L, 1L, 4L, 2L, 6L, 3L, 2L, 5L, 4L, 1L, 6L, 6L, 5L, 1L, 3L, 7L, 4L, 1L, 3L, 6L, 6L, 3L, 7L, 5L, 4L, 3L, 5L, 2L, 5L, 5L, 4L, 3L, 2L, 2L, 6L, 5L, 7L, 7L, 7L, 2L, 6L, 2L, 5L, 7L, 3L, 1L, 3L, 7L, 1L, 6L, 5L, 6L, 3L, 3L, 4L, 6L, 2L, 6L, 1L, 6L, 1L, 4L, 5L, 6L, 2L, 2L, 7L, 4L, 4L, 5L, 7L, 6L, 3L, 4L, 4L, 4L, 4L, 3L, 4L, 7L, 6L, 2L, 5L, 3L, 6L, 7L, 5L, 2L, 6L, 3L, 5L, 4L, 4L, 2L, 5L, 5L, 6L, 7L, 2L, 5L, 7L, 5L, 3L, 2L, 7L, 4L, 7L, 1L, 6L, 7L, 3L, 4L, 4L, 2L, 4L, 5L, 1L, 7L, 5L, 6L, 5L, 1L, 3L, 3L, 2L, 4L, 4L, 3L, 6L, 4L, 1L, 6L, 4L, 6L, 1L, 3L, 3L, 6L, 5L, 5L, 1L, 1L, 6L, 2L, 3L, 7L, 4L, 7L, 6L, 1L, 3L, 3L, 2L, 5L, 1L, 2L, 7L, 2L, 2L, 3L, 6L, 3L, 3L, 5L, 3L, 2L, 6L, 7L, 7L, 6L, 1L, 5L, 4L, 4L, 6L, 1L, 2L, 1L, 1L, 5L, 3L, 2L, 5L, 2L, 5L, 7L, 5L, 6L, 1L, 5L, 7L, 6L, 4L, 5L, 5L, 7L, 1L, 1L, 6L, 1L, 2L, 3L, 1L, 4L, 5L, 7L, 4L, 1L, 7L, 5L, 3L, 1L, 1L, 5L, 5L, 2L, 4L, 4L, 5L, 6L, 4L, 2L, 7L, 4L, 2L, 3L, 4L, 2L, 2L, 2L, 7L, 6L, 2L, 5L, 4L, 3L, 4L, 6L, 7L, 5L, 4L, 5L, 3L, 7L, 2L, 5L, 1L, 2L, 4L, 5L, 6L, 6L, 6L, 4L, 2L, 7L, 2L, 1L, 3L, 1L, 3L, 5L, 2L)), X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), reTrms = list(Zt = new("dgCMatrix", i = c(0L, 3L, 6L, 0L, 1L, 4L, 6L, 2L, 5L, 1L, 2L, 2L, 0L, 4L, 4L, 1L, 5L, 5L, 1L, 6L, 0L, 6L, 4L, 4L, 0L, 0L, 5L, 4L, 4L, 1L, 1L, 5L, 0L, 3L, 6L, 0L, 3L, 2L, 5L, 1L, 1L, 5L, 6L, 3L, 3L, 3L, 1L, 3L, 0L, 6L, 5L, 0L, 3L, 0L, 6L, 5L, 1L, 6L, 2L, 1L, 5L, 5L, 1L, 4L, 1L, 5L, 5L, 5L, 0L, 2L, 2L, 5L, 6L, 6L, 3L, 5L, 6L, 2L, 0L, 3L, 4L, 0L, 0L, 6L, 5L, 3L, 6L, 4L, 4L, 3L, 5L, 4L, 3L, 3L, 0L, 4L, 4L, 6L, 5L, 0L, 0L, 6L, 6L, 2L, 5L, 1L, 1L, 2L, 5L, 1L, 6L, 6L, 3L, 2L, 4L, 1L, 1L, 0L, 2L, 2L, 1L, 6L, 1L, 4L, 1L, 4L, 3L, 6L, 6L, 4L, 3L, 5L, 0L, 2L, 1L, 2L, 2L, 0L, 4L, 5L, 5L, 5L, 3L, 3L, 0L, 4L, 4L, 5L, 0L, 2L, 5L, 2L, 6L, 5L, 2L, 2L, 3L, 0L, 0L, 3L, 1L, 5L, 0L, 1L, 6L, 6L, 2L, 6L, 6L, 3L, 0L, 2L, 4L, 2L, 3L, 1L, 0L, 3L, 6L, 0L, 3L, 1L, 4L, 1L, 1L, 1L, 2L, 0L, 1L, 2L, 6L, 2L, 2L, 5L, 2L, 4L, 2L, 0L, 1L, 3L, 1L, 1L, 6L, 3L, 4L, 0L, 4L, 6L, 6L, 4L, 4L, 3L, 5L, 5L, 3L, 5L, 3L, 6L, 1L, 0L, 2L, 0L, 5L, 0L, 3L, 6L, 4L, 0L, 2L, 3L, 6L, 4L, 3L, 0L, 0L, 4L, 4L, 0L, 4L, 3L, 1L, 5L, 1L, 0L, 4L, 4L, 5L, 5L, 1L, 5L, 5L, 4L, 1L, 5L, 5L, 3L, 1L, 4L, 4L, 6L, 3L, 3L, 0L, 1L, 3L, 0L, 0L, 2L, 0L, 6L, 0L, 5L, 5L, 5L, 3L, 2L, 4L, 2L, 4L, 0L, 0L, 6L, 0L, 6L, 5L, 4L, 3L, 6L, 6L, 3L, 3L, 5L, 3L, 4L, 6L, 1L, 3L, 0L, 3L, 5L, 6L, 3L, 4L, 3L, 1L, 1L, 1L, 0L, 0L, 3L, 3L, 4L, 4L, 5L, 0L, 4L, 3L, 6L, 5L, 6L, 0L, 6L, 1L, 0L, 4L, 1L, 6L, 6L, 2L, 2L, 1L, 0L, 3L, 1L, 4L, 4L, 2L, 1L, 3L, 2L, 2L, 6L, 5L, 5L, 0L, 6L, 3L, 6L, 4L, 3L, 5L, 4L, 2L, 2L, 0L, 0L, 1L, 4L, 0L, 2L, 1L, 6L, 3L, 0L, 2L, 0L, 6L, 6L, 5L, 4L, 3L, 1L, 4L, 4L, 2L, 1L, 5L, 3L, 6L, 0L, 0L, 6L, 5L, 0L, 2L, 2L, 4L, 6L, 1L, 4L, 3L, 1L, 1L, 1L, 3L, 0L, 5L, 0L, 0L, 4L, 5L, 5L, 0L, 2L, 5L, 2L, 2L, 2L, 0L, 3L, 6L, 3L, 4L, 3L, 0L, 4L, 5L, 4L, 1L, 3L, 2L, 0L, 6L, 4L, 4L, 2L, 3L, 0L, 6L, 2L, 2L, 3L, 5L, 0L, 0L, 5L, 2L, 3L, 6L, 1L, 3L, 6L, 4L, 2L, 3L, 6L, 2L, 6L, 0L, 4L, 2L, 6L, 4L, 3L, 0L, 0L, 4L, 4L, 6L, 2L, 3L, 4L, 5L, 6L, 2L, 2L, 1L, 5L, 4L, 1L, 6L, 1L, 5L, 1L, 4L, 0L, 0L, 4L, 5L, 4L, 4L, 1L, 1L, 0L, 0L, 0L, 6L, 3L, 5L, 1L, 3L, 4L, 1L, 3L, 3L, 6L, 6L, 4L, 1L, 0L, 3L, 4L, 1L, 0L, 4L, 4L, 0L, 3L, 1L, 5L, 2L, 1L, 4L, 3L, 0L, 5L, 5L, 4L, 0L, 2L, 6L, 3L, 0L, 2L, 5L, 5L, 2L, 6L, 4L, 3L, 2L, 4L, 1L, 4L, 4L, 3L, 2L, 1L, 1L, 5L, 4L, 6L, 6L, 6L, 1L, 5L, 1L, 4L, 6L, 2L, 0L, 2L, 6L, 0L, 5L, 4L, 5L, 2L, 2L, 3L, 5L, 1L, 5L, 0L, 5L, 0L, 3L, 4L, 5L, 1L, 1L, 6L, 3L, 3L, 4L, 6L, 5L, 2L, 3L, 3L, 3L, 3L, 2L, 3L, 6L, 5L, 1L, 4L, 2L, 5L, 6L, 4L, 1L, 5L, 2L, 4L, 3L, 3L, 1L, 4L, 4L, 5L, 6L, 1L, 4L, 6L, 4L, 2L, 1L, 6L, 3L, 6L, 0L, 5L, 6L, 2L, 3L, 3L, 1L, 3L, 4L, 0L, 6L, 4L, 5L, 4L, 0L, 2L, 2L, 1L, 3L, 3L, 2L, 5L, 3L, 0L, 5L, 3L, 5L, 0L, 2L, 2L, 5L, 4L, 4L, 0L, 0L, 5L, 1L, 2L, 6L, 3L, 6L, 5L, 0L, 2L, 2L, 1L, 4L, 0L, 1L, 6L, 1L, 1L, 2L, 5L, 2L, 2L, 4L, 2L, 1L, 5L, 6L, 6L, 5L, 0L, 4L, 3L, 3L, 5L, 0L, 1L, 0L, 0L, 4L, 2L, 1L, 4L, 1L, 4L, 6L, 4L, 5L, 0L, 4L, 6L, 5L, 3L, 4L, 4L, 6L, 0L, 0L, 5L, 0L, 1L, 2L, 0L, 3L, 4L, 6L, 3L, 0L, 6L, 4L, 2L, 0L, 0L, 4L, 4L, 1L, 3L, 3L, 4L, 5L, 3L, 1L, 6L, 3L, 1L, 2L, 3L, 1L, 1L, 1L, 6L, 5L, 1L, 4L, 3L, 2L, 3L, 5L, 6L, 4L, 3L, 4L, 2L, 6L, 1L, 4L, 0L, 1L, 3L, 4L, 5L, 5L, 5L, 3L, 1L, 6L, 1L, 0L, 2L, 0L, 2L, 4L, 1L),     p = 0:768, Dim = c(7L, 768L), Dimnames = list(c("city_1",     "city_2", "city_3", "city_4", "city_5", "city_6", "city_7"    ), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11",     "12", "13", "14", "15", "16", "17", "18", "19", "20", "21",     "22", "23", "24", "25", "26", "27", "28", "29", "30", "31",     "32", "33", "34", "35", "36", "37", "38", "39", "40", "41",     "42", "43", "44", "45", "46", "47", "48", "49", "50", "51",     "52", "53", "54", "55", "56", "57", "58", "59", "60", "61",     "62", "63", "64", "65", "66", "67", "68", "69", "70", "71",     "72", "73", "74", "75", "76", "77", "78", "79", "80", "81",     "82", "83", "84", "85", "86", "87", "88", "89", "90", "91",     "92", "93", "94", "95", "96", "97", "98", "99", "100", "101",     "102", "103", "104", "105", "106", "107", "108", "109", "110",     "111", "112", "113", "114", "115", "116", "117", "118", "119",     "120", "121", "122", "123", "124", "125", "126", "127", "128",     "129", "130", "131", "132", "133", "134", "135", "136", "137",     "138", "139", "140", "141", "142", "143", "144", "145", "146",     "147", "148", "149", "150", "151", "152", "153", "154", "155",     "156", "157", "158", "159", "160", "161", "162", "163", "164",     "165", "166", "167", "168", "169", "170", "171", "172", "173",     "174", "175", "176", "177", "178", "179", "180", "181", "182",     "183", "184", "185", "186", "187", "188", "189", "190", "191",     "192", "193", "194", "195", "196", "197", "198", "199", "200",     "201", "202", "203", "204", "205", "206", "207", "208", "209",     "210", "211", "212", "213", "214", "215", "216", "217", "218",     "219", "220", "221", "222", "223", "224", "225", "226", "227",     "228", "229", "230", "231", "232", "233", "234", "235", "236",     "237", "238", "239", "240", "241", "242", "243", "244", "245",     "246", "247", "248", "249", "250", "251", "252", "253", "254",     "255", "256", "257", "258", "259", "260", "261", "262", "263",     "264", "265", "266", "267", "268", "269", "270", "271", "272",     "273", "274", "275", "276", "277", "278", "279", "280", "281",     "282", "283", "284", "285", "286", "287", "288", "289", "290",     "291", "292", "293", "294", "295", "296", "297", "298", "299",     "300", "301", "302", "303", "304", "305", "306", "307", "308",     "309", "310", "311", "312", "313", "314", "315", "316", "317",     "318", "319", "320", "321", "322", "323", "324", "325", "326",     "327", "328", "329", "330", "331", "332", "333", "334", "335",     "336", "337", "338", "339", "340", "341", "342", "343", "344",     "345", "346", "347", "348", "349", "350", "351", "352", "353",     "354", "355", "356", "357", "358", "359", "360", "361", "362",     "363", "364", "365", "366", "367", "368", "369", "370", "371",     "372", "373", "374", "375", "376", "377", "378", "379", "380",     "381", "382", "383", "384", "385", "386", "387", "388", "389",     "390", "391", "392", "393", "394", "395", "396", "397", "398",     "399", "400", "401", "402", "403", "404", "405", "406", "407",     "408", "409", "410", "411", "412", "413", "414", "415", "416",     "417", "418", "419", "420", "421", "422", "423", "424", "425",     "426", "427", "428", "429", "430", "431", "432", "433", "434",     "435", "436", "437", "438", "439", "440", "441", "442", "443",     "444", "445", "446", "447", "448", "449", "450", "451", "452",     "453", "454", "455", "456", "457", "458", "459", "460", "461",     "462", "463", "464", "465", "466", "467", "468", "469", "470",     "471", "472", "473", "474", "475", "476", "477", "478", "479",     "480", "481", "482", "483", "484", "485", "486", "487", "488",     "489", "490", "491", "492", "493", "494", "495", "496", "497",     "498", "499", "500", "501", "502", "503", "504", "505", "506",     "507", "508", "509", "510", "511", "512", "513", "514", "515",     "516", "517", "518", "519", "520", "521", "522", "523", "524",     "525", "526", "527", "528", "529", "530", "531", "532", "533",     "534", "535", "536", "537", "538", "539", "540", "541", "542",     "543", "544", "545", "546", "547", "548", "549", "550", "551",     "552", "553", "554", "555", "556", "557", "558", "559", "560",     "561", "562", "563", "564", "565", "566", "567", "568", "569",     "570", "571", "572", "573", "574", "575", "576", "577", "578",     "579", "580", "581", "582", "583", "584", "585", "586", "587",     "588", "589", "590", "591", "592", "593", "594", "595", "596",     "597", "598", "599", "600", "601", "602", "603", "604", "605",     "606", "607", "608", "609", "610", "611", "612", "613", "614",     "615", "616", "617", "618", "619", "620", "621", "622", "623",     "624", "625", "626", "627", "628", "629", "630", "631", "632",     "633", "634", "635", "636", "637", "638", "639", "640", "641",     "642", "643", "644", "645", "646", "647", "648", "649", "650",     "651", "652", "653", "654", "655", "656", "657", "658", "659",     "660", "661", "662", "663", "664", "665", "666", "667", "668",     "669", "670", "671", "672", "673", "674", "675", "676", "677",     "678", "679", "680", "681", "682", "683", "684", "685", "686",     "687", "688", "689", "690", "691", "692", "693", "694", "695",     "696", "697", "698", "699", "700", "701", "702", "703", "704",     "705", "706", "707", "708", "709", "710", "711", "712", "713",     "714", "715", "716", "717", "718", "719", "720", "721", "722",     "723", "724", "725", "726", "727", "728", "729", "730", "731",     "732", "733", "734", "735", "736", "737", "738", "739", "740",     "741", "742", "743", "744", "745", "746", "747", "748", "749",     "750", "751", "752", "753", "754", "755", "756", "757", "758",     "759", "760", "761", "762", "763", "764", "765", "766", "767",     "768")), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,     1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list()),     theta = 1, Lind = c(1L, 1L, 1L, 1L, 1L, 1L, 1L), Gp = c(0L,     7L), lower = 0, Lambdat = new("dgCMatrix", i = 0:6, p = 0:7,         Dim = c(7L, 7L), Dimnames = list(NULL, NULL), x = c(1,         1, 1, 1, 1, 1, 1), factors = list()), flist = list(city = c(1L,     4L, 7L, 1L, 2L, 5L, 7L, 3L, 6L, 2L, 3L, 3L, 1L, 5L, 5L, 2L,     6L, 6L, 2L, 7L, 1L, 7L, 5L, 5L, 1L, 1L, 6L, 5L, 5L, 2L, 2L,     6L, 1L, 4L, 7L, 1L, 4L, 3L, 6L, 2L, 2L, 6L, 7L, 4L, 4L, 4L,     2L, 4L, 1L, 7L, 6L, 1L, 4L, 1L, 7L, 6L, 2L, 7L, 3L, 2L, 6L,     6L, 2L, 5L, 2L, 6L, 6L, 6L, 1L, 3L, 3L, 6L, 7L, 7L, 4L, 6L,     7L, 3L, 1L, 4L, 5L, 1L, 1L, 7L, 6L, 4L, 7L, 5L, 5L, 4L, 6L,     5L, 4L, 4L, 1L, 5L, 5L, 7L, 6L, 1L, 1L, 7L, 7L, 3L, 6L, 2L,     2L, 3L, 6L, 2L, 7L, 7L, 4L, 3L, 5L, 2L, 2L, 1L, 3L, 3L, 2L,     7L, 2L, 5L, 2L, 5L, 4L, 7L, 7L, 5L, 4L, 6L, 1L, 3L, 2L, 3L,     3L, 1L, 5L, 6L, 6L, 6L, 4L, 4L, 1L, 5L, 5L, 6L, 1L, 3L, 6L,     3L, 7L, 6L, 3L, 3L, 4L, 1L, 1L, 4L, 2L, 6L, 1L, 2L, 7L, 7L,     3L, 7L, 7L, 4L, 1L, 3L, 5L, 3L, 4L, 2L, 1L, 4L, 7L, 1L, 4L,     2L, 5L, 2L, 2L, 2L, 3L, 1L, 2L, 3L, 7L, 3L, 3L, 6L, 3L, 5L,     3L, 1L, 2L, 4L, 2L, 2L, 7L, 4L, 5L, 1L, 5L, 7L, 7L, 5L, 5L,     4L, 6L, 6L, 4L, 6L, 4L, 7L, 2L, 1L, 3L, 1L, 6L, 1L, 4L, 7L,     5L, 1L, 3L, 4L, 7L, 5L, 4L, 1L, 1L, 5L, 5L, 1L, 5L, 4L, 2L,     6L, 2L, 1L, 5L, 5L, 6L, 6L, 2L, 6L, 6L, 5L, 2L, 6L, 6L, 4L,     2L, 5L, 5L, 7L, 4L, 4L, 1L, 2L, 4L, 1L, 1L, 3L, 1L, 7L, 1L,     6L, 6L, 6L, 4L, 3L, 5L, 3L, 5L, 1L, 1L, 7L, 1L, 7L, 6L, 5L,     4L, 7L, 7L, 4L, 4L, 6L, 4L, 5L, 7L, 2L, 4L, 1L, 4L, 6L, 7L,     4L, 5L, 4L, 2L, 2L, 2L, 1L, 1L, 4L, 4L, 5L, 5L, 6L, 1L, 5L,     4L, 7L, 6L, 7L, 1L, 7L, 2L, 1L, 5L, 2L, 7L, 7L, 3L, 3L, 2L,     1L, 4L, 2L, 5L, 5L, 3L, 2L, 4L, 3L, 3L, 7L, 6L, 6L, 1L, 7L,     4L, 7L, 5L, 4L, 6L, 5L, 3L, 3L, 1L, 1L, 2L, 5L, 1L, 3L, 2L,     7L, 4L, 1L, 3L, 1L, 7L, 7L, 6L, 5L, 4L, 2L, 5L, 5L, 3L, 2L,     6L, 4L, 7L, 1L, 1L, 7L, 6L, 1L, 3L, 3L, 5L, 7L, 2L, 5L, 4L,     2L, 2L, 2L, 4L, 1L, 6L, 1L, 1L, 5L, 6L, 6L, 1L, 3L, 6L, 3L,     3L, 3L, 1L, 4L, 7L, 4L, 5L, 4L, 1L, 5L, 6L, 5L, 2L, 4L, 3L,     1L, 7L, 5L, 5L, 3L, 4L, 1L, 7L, 3L, 3L, 4L, 6L, 1L, 1L, 6L,     3L, 4L, 7L, 2L, 4L, 7L, 5L, 3L, 4L, 7L, 3L, 7L, 1L, 5L, 3L,     7L, 5L, 4L, 1L, 1L, 5L, 5L, 7L, 3L, 4L, 5L, 6L, 7L, 3L, 3L,     2L, 6L, 5L, 2L, 7L, 2L, 6L, 2L, 5L, 1L, 1L, 5L, 6L, 5L, 5L,     2L, 2L, 1L, 1L, 1L, 7L, 4L, 6L, 2L, 4L, 5L, 2L, 4L, 4L, 7L,     7L, 5L, 2L, 1L, 4L, 5L, 2L, 1L, 5L, 5L, 1L, 4L, 2L, 6L, 3L,     2L, 5L, 4L, 1L, 6L, 6L, 5L, 1L, 3L, 7L, 4L, 1L, 3L, 6L, 6L,     3L, 7L, 5L, 4L, 3L, 5L, 2L, 5L, 5L, 4L, 3L, 2L, 2L, 6L, 5L,     7L, 7L, 7L, 2L, 6L, 2L, 5L, 7L, 3L, 1L, 3L, 7L, 1L, 6L, 5L,     6L, 3L, 3L, 4L, 6L, 2L, 6L, 1L, 6L, 1L, 4L, 5L, 6L, 2L, 2L,     7L, 4L, 4L, 5L, 7L, 6L, 3L, 4L, 4L, 4L, 4L, 3L, 4L, 7L, 6L,     2L, 5L, 3L, 6L, 7L, 5L, 2L, 6L, 3L, 5L, 4L, 4L, 2L, 5L, 5L,     6L, 7L, 2L, 5L, 7L, 5L, 3L, 2L, 7L, 4L, 7L, 1L, 6L, 7L, 3L,     4L, 4L, 2L, 4L, 5L, 1L, 7L, 5L, 6L, 5L, 1L, 3L, 3L, 2L, 4L,     4L, 3L, 6L, 4L, 1L, 6L, 4L, 6L, 1L, 3L, 3L, 6L, 5L, 5L, 1L,     1L, 6L, 2L, 3L, 7L, 4L, 7L, 6L, 1L, 3L, 3L, 2L, 5L, 1L, 2L,     7L, 2L, 2L, 3L, 6L, 3L, 3L, 5L, 3L, 2L, 6L, 7L, 7L, 6L, 1L,     5L, 4L, 4L, 6L, 1L, 2L, 1L, 1L, 5L, 3L, 2L, 5L, 2L, 5L, 7L,     5L, 6L, 1L, 5L, 7L, 6L, 4L, 5L, 5L, 7L, 1L, 1L, 6L, 1L, 2L,     3L, 1L, 4L, 5L, 7L, 4L, 1L, 7L, 5L, 3L, 1L, 1L, 5L, 5L, 2L,     4L, 4L, 5L, 6L, 4L, 2L, 7L, 4L, 2L, 3L, 4L, 2L, 2L, 2L, 7L,     6L, 2L, 5L, 4L, 3L, 4L, 6L, 7L, 5L, 4L, 5L, 3L, 7L, 2L, 5L,     1L, 2L, 4L, 5L, 6L, 6L, 6L, 4L, 2L, 7L, 2L, 1L, 3L, 1L, 3L,     5L, 2L)), cnms = list(city = "(Intercept)"), Ztlist = list(        `1 | city` = new("dgCMatrix", i = c(0L, 3L, 6L, 0L, 1L,         4L, 6L, 2L, 5L, 1L, 2L, 2L, 0L, 4L, 4L, 1L, 5L, 5L, 1L,         6L, 0L, 6L, 4L, 4L, 0L, 0L, 5L, 4L, 4L, 1L, 1L, 5L, 0L,         3L, 6L, 0L, 3L, 2L, 5L, 1L, 1L, 5L, 6L, 3L, 3L, 3L, 1L,         3L, 0L, 6L, 5L, 0L, 3L, 0L, 6L, 5L, 1L, 6L, 2L, 1L, 5L,         5L, 1L, 4L, 1L, 5L, 5L, 5L, 0L, 2L, 2L, 5L, 6L, 6L, 3L,         5L, 6L, 2L, 0L, 3L, 4L, 0L, 0L, 6L, 5L, 3L, 6L, 4L, 4L,         3L, 5L, 4L, 3L, 3L, 0L, 4L, 4L, 6L, 5L, 0L, 0L, 6L, 6L,         2L, 5L, 1L, 1L, 2L, 5L, 1L, 6L, 6L, 3L, 2L, 4L, 1L, 1L,         0L, 2L, 2L, 1L, 6L, 1L, 4L, 1L, 4L, 3L, 6L, 6L, 4L, 3L,         5L, 0L, 2L, 1L, 2L, 2L, 0L, 4L, 5L, 5L, 5L, 3L, 3L, 0L,         4L, 4L, 5L, 0L, 2L, 5L, 2L, 6L, 5L, 2L, 2L, 3L, 0L, 0L,         3L, 1L, 5L, 0L, 1L, 6L, 6L, 2L, 6L, 6L, 3L, 0L, 2L, 4L,         2L, 3L, 1L, 0L, 3L, 6L, 0L, 3L, 1L, 4L, 1L, 1L, 1L, 2L,         0L, 1L, 2L, 6L, 2L, 2L, 5L, 2L, 4L, 2L, 0L, 1L, 3L, 1L,         1L, 6L, 3L, 4L, 0L, 4L, 6L, 6L, 4L, 4L, 3L, 5L, 5L, 3L,         5L, 3L, 6L, 1L, 0L, 2L, 0L, 5L, 0L, 3L, 6L, 4L, 0L, 2L,         3L, 6L, 4L, 3L, 0L, 0L, 4L, 4L, 0L, 4L, 3L, 1L, 5L, 1L,         0L, 4L, 4L, 5L, 5L, 1L, 5L, 5L, 4L, 1L, 5L, 5L, 3L, 1L,         4L, 4L, 6L, 3L, 3L, 0L, 1L, 3L, 0L, 0L, 2L, 0L, 6L, 0L,         5L, 5L, 5L, 3L, 2L, 4L, 2L, 4L, 0L, 0L, 6L, 0L, 6L, 5L,         4L, 3L, 6L, 6L, 3L, 3L, 5L, 3L, 4L, 6L, 1L, 3L, 0L, 3L,         5L, 6L, 3L, 4L, 3L, 1L, 1L, 1L, 0L, 0L, 3L, 3L, 4L, 4L,         5L, 0L, 4L, 3L, 6L, 5L, 6L, 0L, 6L, 1L, 0L, 4L, 1L, 6L,         6L, 2L, 2L, 1L, 0L, 3L, 1L, 4L, 4L, 2L, 1L, 3L, 2L, 2L,         6L, 5L, 5L, 0L, 6L, 3L, 6L, 4L, 3L, 5L, 4L, 2L, 2L, 0L,         0L, 1L, 4L, 0L, 2L, 1L, 6L, 3L, 0L, 2L, 0L, 6L, 6L, 5L,         4L, 3L, 1L, 4L, 4L, 2L, 1L, 5L, 3L, 6L, 0L, 0L, 6L, 5L,         0L, 2L, 2L, 4L, 6L, 1L, 4L, 3L, 1L, 1L, 1L, 3L, 0L, 5L,         0L, 0L, 4L, 5L, 5L, 0L, 2L, 5L, 2L, 2L, 2L, 0L, 3L, 6L,         3L, 4L, 3L, 0L, 4L, 5L, 4L, 1L, 3L, 2L, 0L, 6L, 4L, 4L,         2L, 3L, 0L, 6L, 2L, 2L, 3L, 5L, 0L, 0L, 5L, 2L, 3L, 6L,         1L, 3L, 6L, 4L, 2L, 3L, 6L, 2L, 6L, 0L, 4L, 2L, 6L, 4L,         3L, 0L, 0L, 4L, 4L, 6L, 2L, 3L, 4L, 5L, 6L, 2L, 2L, 1L,         5L, 4L, 1L, 6L, 1L, 5L, 1L, 4L, 0L, 0L, 4L, 5L, 4L, 4L,         1L, 1L, 0L, 0L, 0L, 6L, 3L, 5L, 1L, 3L, 4L, 1L, 3L, 3L,         6L, 6L, 4L, 1L, 0L, 3L, 4L, 1L, 0L, 4L, 4L, 0L, 3L, 1L,         5L, 2L, 1L, 4L, 3L, 0L, 5L, 5L, 4L, 0L, 2L, 6L, 3L, 0L,         2L, 5L, 5L, 2L, 6L, 4L, 3L, 2L, 4L, 1L, 4L, 4L, 3L, 2L,         1L, 1L, 5L, 4L, 6L, 6L, 6L, 1L, 5L, 1L, 4L, 6L, 2L, 0L,         2L, 6L, 0L, 5L, 4L, 5L, 2L, 2L, 3L, 5L, 1L, 5L, 0L, 5L,         0L, 3L, 4L, 5L, 1L, 1L, 6L, 3L, 3L, 4L, 6L, 5L, 2L, 3L,         3L, 3L, 3L, 2L, 3L, 6L, 5L, 1L, 4L, 2L, 5L, 6L, 4L, 1L,         5L, 2L, 4L, 3L, 3L, 1L, 4L, 4L, 5L, 6L, 1L, 4L, 6L, 4L,         2L, 1L, 6L, 3L, 6L, 0L, 5L, 6L, 2L, 3L, 3L, 1L, 3L, 4L,         0L, 6L, 4L, 5L, 4L, 0L, 2L, 2L, 1L, 3L, 3L, 2L, 5L, 3L,         0L, 5L, 3L, 5L, 0L, 2L, 2L, 5L, 4L, 4L, 0L, 0L, 5L, 1L,         2L, 6L, 3L, 6L, 5L, 0L, 2L, 2L, 1L, 4L, 0L, 1L, 6L, 1L,         1L, 2L, 5L, 2L, 2L, 4L, 2L, 1L, 5L, 6L, 6L, 5L, 0L, 4L,         3L, 3L, 5L, 0L, 1L, 0L, 0L, 4L, 2L, 1L, 4L, 1L, 4L, 6L,         4L, 5L, 0L, 4L, 6L, 5L, 3L, 4L, 4L, 6L, 0L, 0L, 5L, 0L,         1L, 2L, 0L, 3L, 4L, 6L, 3L, 0L, 6L, 4L, 2L, 0L, 0L, 4L,         4L, 1L, 3L, 3L, 4L, 5L, 3L, 1L, 6L, 3L, 1L, 2L, 3L, 1L,         1L, 1L, 6L, 5L, 1L, 4L, 3L, 2L, 3L, 5L, 6L, 4L, 3L, 4L,         2L, 6L, 1L, 4L, 0L, 1L, 3L, 4L, 5L, 5L, 5L, 3L, 1L, 6L,         1L, 0L, 2L, 0L, 2L, 4L, 1L), p = 0:768, Dim = c(7L, 768L        ), Dimnames = list(c("city_1", "city_2", "city_3", "city_4",         "city_5", "city_6", "city_7"), c("1", "2", "3", "4",         "5", "6", "7", "8", "9", "10", "11", "12", "13", "14",         "15", "16", "17", "18", "19", "20", "21", "22", "23",         "24", "25", "26", "27", "28", "29", "30", "31", "32",         "33", "34", "35", "36", "37", "38", "39", "40", "41",         "42", "43", "44", "45", "46", "47", "48", "49", "50",         "51", "52", "53", "54", "55", "56", "57", "58", "59",         "60", "61", "62", "63", "64", "65", "66", "67", "68",         "69", "70", "71", "72", "73", "74", "75", "76", "77",         "78", "79", "80", "81", "82", "83", "84", "85", "86",         "87", "88", "89", "90", "91", "92", "93", "94", "95",         "96", "97", "98", "99", "100", "101", "102", "103", "104",         "105", "106", "107", "108", "109", "110", "111", "112",         "113", "114", "115", "116", "117", "118", "119", "120",         "121", "122", "123", "124", "125", "126", "127", "128",         "129", "130", "131", "132", "133", "134", "135", "136",         "137", "138", "139", "140", "141", "142", "143", "144",         "145", "146", "147", "148", "149", "150", "151", "152",         "153", "154", "155", "156", "157", "158", "159", "160",         "161", "162", "163", "164", "165", "166", "167", "168",         "169", "170", "171", "172", "173", "174", "175", "176",         "177", "178", "179", "180", "181", "182", "183", "184",         "185", "186", "187", "188", "189", "190", "191", "192",         "193", "194", "195", "196", "197", "198", "199", "200",         "201", "202", "203", "204", "205", "206", "207", "208",         "209", "210", "211", "212", "213", "214", "215", "216",         "217", "218", "219", "220", "221", "222", "223", "224",         "225", "226", "227", "228", "229", "230", "231", "232",         "233", "234", "235", "236", "237", "238", "239", "240",         "241", "242", "243", "244", "245", "246", "247", "248",         "249", "250", "251", "252", "253", "254", "255", "256",         "257", "258", "259", "260", "261", "262", "263", "264",         "265", "266", "267", "268", "269", "270", "271", "272",         "273", "274", "275", "276", "277", "278", "279", "280",         "281", "282", "283", "284", "285", "286", "287", "288",         "289", "290", "291", "292", "293", "294", "295", "296",         "297", "298", "299", "300", "301", "302", "303", "304",         "305", "306", "307", "308", "309", "310", "311", "312",         "313", "314", "315", "316", "317", "318", "319", "320",         "321", "322", "323", "324", "325", "326", "327", "328",         "329", "330", "331", "332", "333", "334", "335", "336",         "337", "338", "339", "340", "341", "342", "343", "344",         "345", "346", "347", "348", "349", "350", "351", "352",         "353", "354", "355", "356", "357", "358", "359", "360",         "361", "362", "363", "364", "365", "366", "367", "368",         "369", "370", "371", "372", "373", "374", "375", "376",         "377", "378", "379", "380", "381", "382", "383", "384",         "385", "386", "387", "388", "389", "390", "391", "392",         "393", "394", "395", "396", "397", "398", "399", "400",         "401", "402", "403", "404", "405", "406", "407", "408",         "409", "410", "411", "412", "413", "414", "415", "416",         "417", "418", "419", "420", "421", "422", "423", "424",         "425", "426", "427", "428", "429", "430", "431", "432",         "433", "434", "435", "436", "437", "438", "439", "440",         "441", "442", "443", "444", "445", "446", "447", "448",         "449", "450", "451", "452", "453", "454", "455", "456",         "457", "458", "459", "460", "461", "462", "463", "464",         "465", "466", "467", "468", "469", "470", "471", "472",         "473", "474", "475", "476", "477", "478", "479", "480",         "481", "482", "483", "484", "485", "486", "487", "488",         "489", "490", "491", "492", "493", "494", "495", "496",         "497", "498", "499", "500", "501", "502", "503", "504",         "505", "506", "507", "508", "509", "510", "511", "512",         "513", "514", "515", "516", "517", "518", "519", "520",         "521", "522", "523", "524", "525", "526", "527", "528",         "529", "530", "531", "532", "533", "534", "535", "536",         "537", "538", "539", "540", "541", "542", "543", "544",         "545", "546", "547", "548", "549", "550", "551", "552",         "553", "554", "555", "556", "557", "558", "559", "560",         "561", "562", "563", "564", "565", "566", "567", "568",         "569", "570", "571", "572", "573", "574", "575", "576",         "577", "578", "579", "580", "581", "582", "583", "584",         "585", "586", "587", "588", "589", "590", "591", "592",         "593", "594", "595", "596", "597", "598", "599", "600",         "601", "602", "603", "604", "605", "606", "607", "608",         "609", "610", "611", "612", "613", "614", "615", "616",         "617", "618", "619", "620", "621", "622", "623", "624",         "625", "626", "627", "628", "629", "630", "631", "632",         "633", "634", "635", "636", "637", "638", "639", "640",         "641", "642", "643", "644", "645", "646", "647", "648",         "649", "650", "651", "652", "653", "654", "655", "656",         "657", "658", "659", "660", "661", "662", "663", "664",         "665", "666", "667", "668", "669", "670", "671", "672",         "673", "674", "675", "676", "677", "678", "679", "680",         "681", "682", "683", "684", "685", "686", "687", "688",         "689", "690", "691", "692", "693", "694", "695", "696",         "697", "698", "699", "700", "701", "702", "703", "704",         "705", "706", "707", "708", "709", "710", "711", "712",         "713", "714", "715", "716", "717", "718", "719", "720",         "721", "722", "723", "724", "725", "726", "727", "728",         "729", "730", "731", "732", "733", "734", "735", "736",         "737", "738", "739", "740", "741", "742", "743", "744",         "745", "746", "747", "748", "749", "750", "751", "752",         "753", "754", "755", "756", "757", "758", "759", "760",         "761", "762", "763", "764", "765", "766", "767", "768"        )), x = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,         1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1), factors = list())),     nl = c(city = 7L)), family = list(family = "binomial", link = "logit",     linkfun = function (mu)     .Call(C_logit_link, mu), linkinv = function (eta)     .Call(C_logit_linkinv, eta), variance = function (mu)     mu * (1 - mu), dev.resids = function (y, mu, wt)     .Call(C_binomial_dev_resids, y, mu, wt), aic = function (y,         n, mu, wt, dev)     {        m <- if (any(n > 1))             n        else wt        -2 * sum(ifelse(m > 0, (wt/m), 0) * dbinom(round(m *             y), round(m), mu, log = TRUE))    }, mu.eta = function (eta)     .Call(C_logit_mu_eta, eta), initialize = {        if (NCOL(y) == 1) {            if (is.factor(y))                 y <- y != levels(y)[1L]            n <- rep.int(1, nobs)            y[weights == 0] <- 0            if (any(y < 0 | y > 1))                 stop("y values must be 0 <= y <= 1")            mustart <- (weights * y + 0.5)/(weights + 1)            m <- weights * y            if ("binomial" == "binomial" && any(abs(m - round(m)) >                 0.001))                 warning(gettextf("non-integer #successes in a %s glm!",                   "binomial"), domain = NA)        }        else if (NCOL(y) == 2) {            if ("binomial" == "binomial" && any(abs(y - round(y)) >                 0.001))                 warning(gettextf("non-integer counts in a %s glm!",                   "binomial"), domain = NA)            n <- (y1 <- y[, 1L]) + y[, 2L]            y <- y1/n            if (any(n0 <- n == 0))                 y[n0] <- 0            weights <- weights * n            mustart <- (n * y + 0.5)/(n + 1)        }        else stop(gettextf("for the '%s' family, y must be a vector of 0 and 1's\nor a 2 column matrix where col 1 is no. successes and col 2 is no. failures",             "binomial"), domain = NA)    }, validmu = function (mu)     all(is.finite(mu)) && all(mu > 0 & mu < 1), valideta = function (eta)     TRUE, simulate = function (object, nsim)     {        ftd <- fitted(object)        n <- length(ftd)        ntot <- n * nsim        wts <- object$prior.weights        if (any(wts%%1 != 0))             stop("cannot simulate from non-integer prior.weights")        if (!is.null(m <- object$model)) {            y <- model.response(m)            if (is.factor(y)) {                yy <- factor(1 + rbinom(ntot, size = 1, prob = ftd),                   labels = levels(y))                split(yy, rep(seq_len(nsim), each = n))            }            else if (is.matrix(y) && ncol(y) == 2) {                yy <- vector("list", nsim)                for (i in seq_len(nsim)) {                  Y <- rbinom(n, size = wts, prob = ftd)                  YY <- cbind(Y, wts - Y)                  colnames(YY) <- colnames(y)                  yy[[i]] <- YY                }                yy            }            else rbinom(ntot, size = wts, prob = ftd)/wts        }        else rbinom(ntot, size = wts, prob = ftd)/wts    }, dispersion = 1), wmsgs = character(0), verbose = 0L, control = list(    optimizer = c("bobyqa", "Nelder_Mead"), restart_edge = FALSE,     boundary.tol = 1e-05, calc.derivs = TRUE, use.last.params = FALSE,     checkControl = list(check.nobs.vs.rankZ = "ignore", check.nobs.vs.nlev = "stop",         check.nlev.gtreq.5 = "ignore", check.nlev.gtr.1 = "stop",         check.nobs.vs.nRE = "stop", check.rankX = "message+drop.cols",         check.scaleX = "warning", check.formula.LHS = "stop",         check.response.not.const = "stop"), checkConv = list(        check.conv.grad = list(action = "warning", tol = 0.002,             relTol = NULL), check.conv.singular = list(action = "message",             tol = 1e-04), check.conv.hess = list(action = "warning",             tol = 1e-06)), optCtrl = list(), tolPwrss = 1e-07,     compDev = TRUE, nAGQ0initStep = TRUE), nAGQ = 0L)
10: do.call(mkGlmerDevfun, c(glmod, list(verbose = verbose, control = control,     nAGQ = nAGQinit)))
11: lme4::glmer(diabetes ~ 1 + (1 | city), data = dataset, family = binomial(link = "logit"))
12: eval(expr, envir, enclos)
13: eval(expr, envir, enclos)
14: eval_with_user_handlers(expr, envir, enclos, user_handlers)
15: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers))
16: withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)
17: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler))
18: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr,     envir, enclos, user_handlers)), warning = wHandler, error = eHandler,     message = mHandler)))
19: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,     debug = debug, last = i == length(out), use_try = stop_on_error !=         2L, keep_warning = keep_warning, keep_message = keep_message,     log_echo = log_echo, log_warning = log_warning, output_handler = output_handler,     include_timing = include_timing)
20: evaluate::evaluate(...)
21: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options))
22: in_dir(input_dir(), expr)
23: in_input_dir(evaluate(code, envir = env, new_device = FALSE,     keep_warning = if (is.numeric(options$warning)) TRUE else options$warning,     keep_message = if (is.numeric(options$message)) TRUE else options$message,     stop_on_error = if (is.numeric(options$error)) options$error else {        if (options$error && options$include)             0L        else 2L    }, output_handler = knit_handlers(options$render, options)))
24: eng_r(options)
25: block_exec(params)
26: call_block(x)
27: process_group(group)
28: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e))
29: withCallingHandlers(expr, error = function(e) {    loc = if (is.function(fun))         trimws(fun(label))    else ""    if (loc != "")         loc = sprintf(" at lines %s", loc)    message(one_string(handler(e, loc)))})
30: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),     error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)),     function(e, loc) {        setwd(wd)        write_utf8(res, output %n% stdout())        paste0("\nQuitting from lines ", loc)    }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
31: process_file(text, output)
32: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
33: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),     output_dir = getwd(), ...)
34: vweave_rmarkdown(...)
35: engine$weave(file, quiet = quiet, encoding = enc)
36: doTryCatch(return(expr), name, parentenv, handler)
37: tryCatchOne(expr, names, parentenv, handlers[[1L]])
38: tryCatchList(expr, classes, parentenv, handlers)
39: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }    outputs <- c(outputs, output)}, error = function(e) {    thisOK <<- FALSE    fails <<- c(fails, file)    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
40: tools::buildVignettes(dir = "/tmp/th798/16190367/R-release/1345/sjtable2df.Rcheck/vign_test/sjtable2df",     skip = TRUE, ser_elibs = "/tmp/th798/16190367/RtmpPoWyVY/file363b5d2b45ef11.rds")
An irrecoverable exception occurred. R is aborting now ...

* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  '/tmp/th798/16190367/R-release/1345/sjtable2df.Rcheck/00check.log'
for details.

[1] "2025-03-30 01:16:42 MST"
> system(paste(c("diff -u", Rcheck.list), collapse=" "))
--- R_version_4.4.3_2025-02-28/release_1.17.0.Rcheck/00check.log	2025-03-30 01:15:29.148909396 -0700
+++ R_version_4.4.3_2025-02-28/master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.Rcheck/00check.log	2025-03-30 01:16:42.248238614 -0700
@@ -160,7 +160,7 @@
 37: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 38: tryCatchList(expr, classes, parentenv, handlers)
 39: tryCatch({    engine$weave(file, quiet = quiet, encoding = enc)    setwd(startdir)    output <- find_vignette_product(name, by = "weave", engine = engine)    if (!have.makefile && vignette_is_tex(output)) {        texi2pdf(file = output, clean = FALSE, quiet = quiet)        output <- find_vignette_product(name, by = "texi2pdf",             engine = engine)    }    outputs <- c(outputs, output)}, error = function(e) {    thisOK <<- FALSE    fails <<- c(fails, file)    message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",         file, conditionMessage(e)))})
-40: tools::buildVignettes(dir = "/tmp/th798/16190367/R-release/1345/sjtable2df.Rcheck/vign_test/sjtable2df",     skip = TRUE, ser_elibs = "/tmp/th798/16190367/Rtmpv5CxGJ/file362a973bd572f9.rds")
+40: tools::buildVignettes(dir = "/tmp/th798/16190367/R-release/1345/sjtable2df.Rcheck/vign_test/sjtable2df",     skip = TRUE, ser_elibs = "/tmp/th798/16190367/RtmpPoWyVY/file363b5d2b45ef11.rds")
 An irrecoverable exception occurred. R is aborting now ...
 
 * checking PDF version of manual ... OK
> library(data.table, lib.loc=R.home("library"))
> (sig.diff.dt <- myDiff(Rvers))
Key: <checking>
Empty data.table (0 rows and 3 cols): checking,master,release
> 
> ## If there are significant differences, use git bisect to find when
> ## they started.
> if(nrow(sig.diff.dt)){
+   dt.git <- file.path(task.dir, "data.table.git")
+   system(paste("cd ~/R/data.table && git fetch --tags"))
+   system(paste("git clone ~/R/data.table", dt.git))
+   release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]])
+   rev.parse.cmd <- paste(
+     "cd", dt.git, "&& git rev-parse master")
+   master.sha <- system(rev.parse.cmd, intern=TRUE)
+   merge.base.cmd <- paste(
+     "cd", dt.git, "&& git merge-base master", release.tag)
+   merge.base.sha <- system(merge.base.cmd, intern=TRUE)
+   old.sha <- merge.base.sha
+   run_R <- file.path(proj.dir, "install_dt_then_check_dep.R")
+   sig.diff.dt[, first.bad.commit := NA_character_]
+   sig.diff.dt[, comments := NA_character_]
+   for(diff.i in 1:nrow(sig.diff.dt)){
+     sig.diff.row <- sig.diff.dt[diff.i]
+     bisect.cmd <- paste(
+       "cd", dt.git, "&&",
+       "git bisect start &&",
+       "git bisect old", old.sha, "&&",
+       "git bisect new master &&",
+       "git bisect run",
+       R.home('bin/Rscript'),
+       run_R,
+       shQuote(sig.diff.row$checking),
+       sig.diff.row$release,
+       rev.dep.release.tar.gz,
+       release.tag)
+     print(bisect.cmd)
+     bisect.out <- system(bisect.cmd, intern=TRUE)
+     cat(bisect.out,sep="\n")
+     if(is.null(attr(bisect.out,"status"))){
+       first.bad.sha <- nc::capture_all_str(
+         bisect.out,
+         sha="[0-9a-f]+",
+         " is the first new commit")$sha
+       parent.cmd <- paste(
+         "cd ~/R/data.table && git log --pretty=%P -n 1",
+         first.bad.sha)
+       parent.sha <- system(parent.cmd, intern=TRUE)
+       sig.diff.dt[diff.i, first.bad.commit := first.bad.sha]
+       parent.msg <- paste0("parent=", parent.sha)
+       this.comment <- if(parent.sha==old.sha){
+         paste(parent.msg, "same as git bisect old")
+       }else if(first.bad.sha==master.sha){
+         paste("same as git bisect new=master,", parent.msg)
+       }else{
+         parent.msg
+       }
+       sig.diff.dt[diff.i, comments := this.comment]
+     }
+   }
+   ## add CRAN column.
+   sig.diff.dt[, CRAN := {
+     flavor <- get_flavor(Rvers)
+     details <- data.table(flavor=unique(flavor))[, {
+       base <- "https://www.r-project.org/nosvn/R.check/"
+       u <- paste0(base, flavor, "/", rev.dep, "-00check.txt")
+       check.txt <- tempfile()
+       tryCatch({
+         download.file(u, check.txt, quiet=TRUE)
+       }, error=function(e){
+         NULL
+       })
+       check.lines <- if(file.exists(check.txt)){
+         readLines(check.txt,encoding="UTF-8")
+       }else{
+         ""
+       }
+       repl.lines <- gsub("[\u2018\u2019]", "'", check.lines)
+       ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C.
+       myStatus(line.vec=repl.lines)
+     }, by=flavor]
+     select.dt <- data.table(flavor, checking)
+     details[select.dt, msg, on=.(flavor, checking)]
+   }]
+   dir.create(file.path(job.dir, Rvers))
+   diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv")
+   data.table::fwrite(sig.diff.dt, diffs.csv)
+   print(sig.diff.dt)
+ }
>