Note: the module "R" cannot be unloaded because it was not loaded. WARNING: ignoring environment value of R_HOME R Under development (unstable) (2025-03-29 r88074) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-30/deps.csv", task.str = "1351", release = "/scratch/th798/data.table-revdeps/2025-03-30/data.table_release_1.17.0.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-03-30/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/16190373/R-devel/1351" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/16190373/R-devel/1351/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "slim" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/16190373/R-devel/1351/library" [2] "/projects/genomic-ml/R/R-devel/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-03-30 01:01:16 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/16190373/R-devel/1351/library' (as 'lib' is unspecified) also installing the dependencies 'jmcm', 'gee' trying URL 'http://cloud.r-project.org/src/contrib/jmcm_0.2.4.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/gee_4.13-29.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/slim_0.1.1.tar.gz' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package 'slim' failed * installing *source* package 'jmcm' ... ** this is package 'jmcm' version '0.2.4' ** package 'jmcm' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' using C++ compiler: 'g++ (Spack GCC) 12.2.0' using C++11 /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++11 -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-devel/library/roptim/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++11 -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-devel/library/roptim/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c external.cpp -o external.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-devel/library/roptim/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++11 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o jmcm.so RcppExports.o external.o init.o -L/home/th798/R/R-devel/lib -lRlapack -L/home/th798/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath installing to /tmp/th798/16190373/R-devel/1351/library/00LOCK-jmcm/00new/jmcm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jmcm) * installing *source* package 'gee' ... ** this is package 'gee' version '4.13-29' ** package 'gee' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' using Fortran compiler: 'GNU Fortran (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gfortran -fpic -g -O2 -c dgedi.f -o dgedi.o /packages/gcc/12.2.0-nnbserq/bin/gfortran -fpic -g -O2 -c dgefa.f -o dgefa.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ugee.c -o ugee.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o gee.so dgedi.o dgefa.o ugee.o -L/home/th798/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath installing to /tmp/th798/16190373/R-devel/1351/library/00LOCK-gee/00new/gee/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gee) The downloaded source packages are in '/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages' Warning messages: 1: In download.file(urls, destfiles, "libcurl", mode = "wb", ...) : URL 'http://cloud.r-project.org/src/contrib/slim_0.1.1.tar.gz': Timeout of 60 seconds was reached 2: In download.file(urls, destfiles, "libcurl", mode = "wb", ...) : some files were not downloaded > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 17.082 2.573 162.378 > print(Sys.time()) [1] "2025-03-30 01:03:58 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-03-30 01:03:59 MST" Installing package into '/tmp/th798/16190373/R-devel/1351/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.0' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16190373/R-devel/1351/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-30 01:04:26 MST" * using log directory '/tmp/th798/16190373/R-devel/1351/slim.Rcheck' * using R Under development (unstable) (2025-03-29 r88074) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII Error in untar2(tarfile, files, list, exdir, restore_times) : incomplete block on file Execution halted [1] "2025-03-30 01:04:27 MST" [1] "2025-03-30 01:04:27 MST" Installing package into '/tmp/th798/16190373/R-devel/1351/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.99' ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16190373/R-devel/1351/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-30 01:04:53 MST" * using log directory '/tmp/th798/16190373/R-devel/1351/slim.Rcheck' * using R Under development (unstable) (2025-03-29 r88074) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII Error in untar2(tarfile, files, list, exdir, restore_times) : incomplete block on file Execution halted [1] "2025-03-30 01:04:54 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: checking master release 1: > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } From https://github.com/rdatatable/data.table ! [rejected] 1.15.0 -> 1.15.0 (would clobber existing tag) Cloning into '/tmp/th798/16190373/R-devel/1351/data.table.git'... done. [1] "cd /tmp/th798/16190373/R-devel/1351/data.table.git && git bisect start && git bisect old 770e80b6d83bad5870d1df2df252d5b00ddd5134 && git bisect new master && git bisect run /home/th798/R/R-devel/bin/Rscript ~/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R 'NA' NA /tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz 1.17.0" Installing package into '/tmp/th798/16190373/R-devel/1351/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.0' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/16190373/R-devel/1351/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Error in untar2(tarfile, files, list, exdir, restore_times) : incomplete block on file Execution halted Installing package into '/tmp/th798/16190373/R-devel/1351/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.0' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/16190373/R-devel/1351/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Error in untar2(tarfile, files, list, exdir, restore_times) : incomplete block on file Execution halted Installing package into '/tmp/th798/16190373/R-devel/1351/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.0' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/16190373/R-devel/1351/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Error in untar2(tarfile, files, list, exdir, restore_times) : incomplete block on file Execution halted Installing package into '/tmp/th798/16190373/R-devel/1351/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.0' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/16190373/R-devel/1351/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Error in untar2(tarfile, files, list, exdir, restore_times) : incomplete block on file Execution halted Installing package into '/tmp/th798/16190373/R-devel/1351/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.0' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/16190373/R-devel/1351/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Error in untar2(tarfile, files, list, exdir, restore_times) : incomplete block on file Execution halted Installing package into '/tmp/th798/16190373/R-devel/1351/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.0' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/16190373/R-devel/1351/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Error in untar2(tarfile, files, list, exdir, restore_times) : incomplete block on file Execution halted status: waiting for both good and bad commits status: waiting for bad commit, 1 good commit known Bisecting: 40 revisions left to test after this (roughly 5 steps) [8f9554bdd14034b2271206e626029511c54322b5] Merge branch 'master' into depr-withset running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'NA' 'NA' '/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz' '1.17.0' checking "NA" expected "NA" rev_dep_tar_gz "/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz" dt_release_version "1.17.0" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/16190373/R-devel/1351/data.table.git/slim.Rcheck' * using R Under development (unstable) (2025-03-29 r88074) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII Empty data.table (0 rows and 2 cols): checking,msg Empty data.table (0 rows and 2 cols): checking,msg Bisecting: 19 revisions left to test after this (roughly 4 steps) [dae865a989696f81d3589be53bcf003b99875cc7] Merge branch 'master' into depr-logasint running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'NA' 'NA' '/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz' '1.17.0' checking "NA" expected "NA" rev_dep_tar_gz "/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz" dt_release_version "1.17.0" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/16190373/R-devel/1351/data.table.git/slim.Rcheck' * using R Under development (unstable) (2025-03-29 r88074) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII Empty data.table (0 rows and 2 cols): checking,msg Empty data.table (0 rows and 2 cols): checking,msg Bisecting: 10 revisions left to test after this (roughly 3 steps) [17aa167e1ed61e371a08cd9e6fb7ee75b7f0a15c] Coc funding update (#6803) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'NA' 'NA' '/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz' '1.17.0' checking "NA" expected "NA" rev_dep_tar_gz "/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz" dt_release_version "1.17.0" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/16190373/R-devel/1351/data.table.git/slim.Rcheck' * using R Under development (unstable) (2025-03-29 r88074) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII Empty data.table (0 rows and 2 cols): checking,msg Empty data.table (0 rows and 2 cols): checking,msg Bisecting: 4 revisions left to test after this (roughly 2 steps) [6ea929f948d6fee39f0fdfffeacdc6443306a582] Remove trailing comma from rowwiseDT() example in news (#6836) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'NA' 'NA' '/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz' '1.17.0' checking "NA" expected "NA" rev_dep_tar_gz "/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz" dt_release_version "1.17.0" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/16190373/R-devel/1351/data.table.git/slim.Rcheck' * using R Under development (unstable) (2025-03-29 r88074) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII Empty data.table (0 rows and 2 cols): checking,msg Empty data.table (0 rows and 2 cols): checking,msg Bisecting: 2 revisions left to test after this (roughly 1 step) [18ba9c55c96166ee9d83602cff01e395c77a339a] Use seq_along() where appropriate (#6824) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'NA' 'NA' '/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz' '1.17.0' checking "NA" expected "NA" rev_dep_tar_gz "/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz" dt_release_version "1.17.0" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/16190373/R-devel/1351/data.table.git/slim.Rcheck' * using R Under development (unstable) (2025-03-29 r88074) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII Empty data.table (0 rows and 2 cols): checking,msg Empty data.table (0 rows and 2 cols): checking,msg Bisecting: 0 revisions left to test after this (roughly 0 steps) [cbb918b3fb37fb0e162f865d78808429373e24a9] consistently use "=" for assignment (#6825) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'NA' 'NA' '/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz' '1.17.0' checking "NA" expected "NA" rev_dep_tar_gz "/tmp/th798/16190373/Rtmpw4K1CB/downloaded_packages/slim_0.1.1.tar.gz" dt_release_version "1.17.0" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/16190373/R-devel/1351/data.table.git/slim.Rcheck' * using R Under development (unstable) (2025-03-29 r88074) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII Empty data.table (0 rows and 2 cols): checking,msg Empty data.table (0 rows and 2 cols): checking,msg cbb918b3fb37fb0e162f865d78808429373e24a9 is the first new commit commit cbb918b3fb37fb0e162f865d78808429373e24a9 Author: Michael Chirico Date: Thu Feb 20 10:24:18 2025 -0800 consistently use "=" for assignment (#6825) * consistently use "=" for assignment * Still need to actively remove the default linter .ci/.lintr.R | 6 ++++-- R/IDateTime.R | 4 ++-- R/as.data.table.R | 2 +- R/between.R | 2 +- R/cedta.R | 4 ++-- R/data.table.R | 24 ++++++++++++------------ R/fcast.R | 6 +++--- R/fmelt.R | 4 ++-- R/fread.R | 4 ++-- R/fwrite.R | 2 +- R/groupingsets.R | 4 ++-- R/print.data.table.R | 8 ++++---- R/test.data.table.R | 14 +++++++------- R/wrappers.R | 4 ++-- R/xts.R | 4 ++-- tests/autoprint.R | 6 +++--- tests/autoprint.Rout.save | 6 +++--- 17 files changed, 53 insertions(+), 51 deletions(-) bisect found first bad commit > WARNING: ignoring environment value of R_HOME R version 4.4.3 (2025-02-28) -- "Trophy Case" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-03-30/deps.csv", task.str = "1351", release = "/scratch/th798/data.table-revdeps/2025-03-30/data.table_release_1.17.0.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-03-30/data.table_master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/16190373/R-release/1351" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/16190373/R-release/1351/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "slim" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/16190373/R-release/1351/library" [2] "/projects/genomic-ml/R/R-release/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-03-30 01:09:16 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/16190373/R-release/1351/library' (as 'lib' is unspecified) also installing the dependency 'jmcm' trying URL 'http://cloud.r-project.org/src/contrib/jmcm_0.2.4.tar.gz' Content type 'application/x-gzip' length 1019245 bytes (995 KB) ================================================== downloaded 995 KB trying URL 'http://cloud.r-project.org/src/contrib/slim_0.1.1.tar.gz' Content type 'application/x-gzip' length 284996 bytes (278 KB) ================================================== downloaded 278 KB * installing *source* package 'jmcm' ... ** package 'jmcm' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' using C++ compiler: 'g++ (Spack GCC) 12.2.0' using C++11 /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++11 -I"/home/th798/R/R-release/include" -DNDEBUG -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-release/library/roptim/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++11 -I"/home/th798/R/R-release/include" -DNDEBUG -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-release/library/roptim/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c external.cpp -o external.o In file included from /projects/genomic-ml/R/R-release/library/RcppArmadillo/include/armadillo:26, from /projects/genomic-ml/R/R-release/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /projects/genomic-ml/R/R-release/library/RcppArmadillo/include/RcppArmadillo.h:29, from external.cpp:20: /projects/genomic-ml/R/R-release/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /projects/genomic-ml/R/R-release/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /projects/genomic-ml/R/R-release/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppArmadillo/include' -I'/projects/genomic-ml/R/R-release/library/roptim/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++11 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o jmcm.so RcppExports.o external.o init.o -L/home/th798/R/R-release/lib -lRlapack -L/home/th798/R/R-release/lib -lRblas -lgfortran -lm -lquadmath installing to /tmp/th798/16190373/R-release/1351/library/00LOCK-jmcm/00new/jmcm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jmcm) * installing *source* package 'slim' ... ** package 'slim' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (slim) The downloaded source packages are in '/tmp/th798/16190373/RtmpfObCHB/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 19.740 1.845 38.808 > print(Sys.time()) [1] "2025-03-30 01:09:55 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-03-30 01:09:55 MST" Installing package into '/tmp/th798/16190373/R-release/1351/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16190373/R-release/1351/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-30 01:10:22 MST" * using log directory '/tmp/th798/16190373/R-release/1351/slim.Rcheck' * using R version 4.4.3 (2025-02-28) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'slim/DESCRIPTION' ... OK * this is package 'slim' version '0.1.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'slim' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) fit_slim.Rd:24: Lost braces; missing escapes or markup? 24 | sum(x' V^{-1} (y - x beta)) = 0 as the covariance V tends from V[, , 1] + | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ...sh: line 1: 3523073 Segmentation fault (core dumped) LANGUAGE=en _R_CHECK_INTERNALS2_=1 '/home/th798/R/R-release/bin/R' --vanilla > 'slim-Ex.Rout' 2>&1 < 'slim-Ex.R' ERROR Running examples in 'slim-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: slim > ### Title: Fit Singular Linear Models > ### Aliases: slim > > ### ** Examples > > slim_fit <- slim(renalfn ~ group + month, dialysis) > summary(slim_fit) Singular Linear Model Fit Call: slim(formula = renalfn ~ group + month, data = dialysis) Estimate Std. Error z value Pr(>|z|) (Intercept) 37.4212 4.5476 8.229 < 2e-16 *** groupB1 19.5866 8.4709 2.312 0.020766 * groupB2 25.1858 7.0129 3.591 0.000329 *** month -0.4941 0.2694 -1.834 0.066664 . --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 > > if(require("lme4")) { + lmer_fit <- lmer(renalfn ~ group + month + (1 + month | id), dialysis) + slim_fit <- slim(renalfn ~ 1 + group + month, dialysis, covariance = lmer_fit) + summary(slim_fit) + summary(slim_fit, empirical = FALSE) + } Loading required package: lme4 Loading required package: Matrix Warning in check_dep_version() : ABI version mismatch: lme4 was built with Matrix ABI version 1 Current Matrix ABI version is 2 Please re-install lme4 from source or restore original 'Matrix' package *** caught segfault *** address (nil), cause 'unknown' Traceback: 1: .Call(merPredDCreate, as(X, "matrix"), Lambdat, LamtUt, Lind, RZX, Ut, Utr, V, VtV, Vtr, Xwts, Zt, beta0, delb, delu, theta, u0) 2: initializePtr() 3: 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501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list()), theta = c(1, 0, 1), Lambdat = new("dgCMatrix", i = c(0L, 0L, 1L, 2L, 2L, 3L, 4L, 4L, 5L, 6L, 6L, 7L, 8L, 8L, 9L, 10L, 10L, 11L, 12L, 12L, 13L, 14L, 14L, 15L, 16L, 16L, 17L, 18L, 18L, 19L, 20L, 20L, 21L, 22L, 22L, 23L, 24L, 24L, 25L, 26L, 26L, 27L, 28L, 28L, 29L, 30L, 30L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 36L, 36L, 37L, 38L, 38L, 39L, 40L, 40L, 41L, 42L, 42L, 43L, 44L, 44L, 45L, 46L, 46L, 47L, 48L, 48L, 49L, 50L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 56L, 56L, 57L, 58L, 58L, 59L, 60L, 60L, 61L, 62L, 62L, 63L, 64L, 64L, 65L, 66L, 66L, 67L, 68L, 68L, 69L, 70L, 70L, 71L, 72L, 72L, 73L, 74L, 74L, 75L, 76L, 76L, 77L, 78L, 78L, 79L, 80L, 80L, 81L, 82L, 82L, 83L, 84L, 84L, 85L, 86L, 86L, 87L, 88L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 94L, 94L, 95L, 96L, 96L, 97L, 98L, 98L, 99L, 100L, 100L, 101L, 102L, 102L, 103L, 104L, 104L, 105L, 106L, 106L, 107L, 108L, 108L, 109L, 110L, 110L, 111L, 112L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 118L, 118L, 119L, 120L, 120L, 121L, 122L, 122L, 123L, 124L, 124L, 125L, 126L, 126L, 127L, 128L, 128L, 129L, 130L, 130L, 131L, 132L, 132L, 133L, 134L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 140L, 140L, 141L, 142L, 142L, 143L, 144L, 144L, 145L, 146L, 146L, 147L, 148L, 148L, 149L, 150L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 156L, 157L, 158L, 158L, 159L, 160L, 160L, 161L, 162L, 162L, 163L, 164L, 164L, 165L, 166L, 166L, 167L, 168L, 168L, 169L, 170L, 170L, 171L, 172L, 172L, 173L, 174L, 174L, 175L, 176L, 176L, 177L, 178L, 178L, 179L, 180L, 180L, 181L, 182L, 182L, 183L, 184L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 190L, 190L, 191L, 192L, 192L, 193L, 194L, 194L, 195L, 196L, 196L, 197L, 198L, 198L, 199L, 200L, 200L, 201L, 202L, 202L, 203L, 204L, 204L, 205L, 206L, 206L, 207L, 208L, 208L, 209L, 210L, 210L, 211L, 212L, 212L, 213L, 214L, 214L, 215L, 216L, 216L, 217L, 218L, 218L, 219L, 220L, 220L, 221L, 222L, 222L, 223L, 224L, 224L, 225L, 226L, 226L, 227L, 228L, 228L, 229L, 230L, 230L, 231L), p = c(0L, 1L, 3L, 4L, 6L, 7L, 9L, 10L, 12L, 13L, 15L, 16L, 18L, 19L, 21L, 22L, 24L, 25L, 27L, 28L, 30L, 31L, 33L, 34L, 36L, 37L, 39L, 40L, 42L, 43L, 45L, 46L, 48L, 49L, 51L, 52L, 54L, 55L, 57L, 58L, 60L, 61L, 63L, 64L, 66L, 67L, 69L, 70L, 72L, 73L, 75L, 76L, 78L, 79L, 81L, 82L, 84L, 85L, 87L, 88L, 90L, 91L, 93L, 94L, 96L, 97L, 99L, 100L, 102L, 103L, 105L, 106L, 108L, 109L, 111L, 112L, 114L, 115L, 117L, 118L, 120L, 121L, 123L, 124L, 126L, 127L, 129L, 130L, 132L, 133L, 135L, 136L, 138L, 139L, 141L, 142L, 144L, 145L, 147L, 148L, 150L, 151L, 153L, 154L, 156L, 157L, 159L, 160L, 162L, 163L, 165L, 166L, 168L, 169L, 171L, 172L, 174L, 175L, 177L, 178L, 180L, 181L, 183L, 184L, 186L, 187L, 189L, 190L, 192L, 193L, 195L, 196L, 198L, 199L, 201L, 202L, 204L, 205L, 207L, 208L, 210L, 211L, 213L, 214L, 216L, 217L, 219L, 220L, 222L, 223L, 225L, 226L, 228L, 229L, 231L, 232L, 234L, 235L, 237L, 238L, 240L, 241L, 243L, 244L, 246L, 247L, 249L, 250L, 252L, 253L, 255L, 256L, 258L, 259L, 261L, 262L, 264L, 265L, 267L, 268L, 270L, 271L, 273L, 274L, 276L, 277L, 279L, 280L, 282L, 283L, 285L, 286L, 288L, 289L, 291L, 292L, 294L, 295L, 297L, 298L, 300L, 301L, 303L, 304L, 306L, 307L, 309L, 310L, 312L, 313L, 315L, 316L, 318L, 319L, 321L, 322L, 324L, 325L, 327L, 328L, 330L, 331L, 333L, 334L, 336L, 337L, 339L, 340L, 342L, 343L, 345L, 346L, 348L), Dim = c(232L, 232L), Dimnames = list(NULL, NULL), x = c(1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1), factors = list()), Lind = c(1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L), n = 325L, X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 3, 12, 18, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 3, 0, 0, 3, 0, 3, 6, 12, 0, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 12, 18, 0, 3, 12, 18, 0, 3, 6, 0, 3, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 0, 0, 3, 6, 12, 3, 3, 0, 3, 0, 3, 6, 0, 0, 0, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 18, 0, 0, 0, 0, 3, 6, 0, 3, 0, 3, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 3, 6, 0, 3, 6, 12, 0, 3, 6, 12, 0, 0, 3, 6, 0, 3, 6, 12, 0, 0, 3, 6, 12, 0, 3, 0, 0, 3, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 0, 0)) 8: do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")], n = nrow(X), list(X = X))) 9: (function (fr, X, reTrms, REML = TRUE, start = NULL, verbose = 0, control = lmerControl(), ...) { p <- ncol(X) rho <- new.env(parent = parent.env(environment())) rho$pp <- do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")], n = nrow(X), list(X = X))) REMLpass <- if (REML) p else 0L rho$resp <- if (missing(fr)) mkRespMod(REML = REMLpass, ...) else mkRespMod(fr, REML = REMLpass) pp <- resp <- NULL rho$lmer_Deviance <- lmer_Deviance devfun <- function(theta) .Call(lmer_Deviance, pp$ptr(), resp$ptr(), as.double(theta)) environment(devfun) <- rho if (is.null(start) && all(reTrms$cnms == "(Intercept)") && length(reTrms$flist) == length(reTrms$lower) && !is.null(y <- model.response(fr))) { v <- sapply(reTrms$flist, function(f) var(ave(y, f))) v.e <- var(y) - sum(v) if (!is.na(v.e) && v.e > 0) { v.rel <- v/v.e if (all(v.rel >= reTrms$lower^2)) rho$pp$setTheta(sqrt(v.rel)) } } if (length(rho$resp$y) > 0) devfun(rho$pp$theta) rho$lower <- reTrms$lower devfun})(fr = list(renalfn = c(42.18586736, 49.51905287, 47.23348216, 39.73473231, 36.11415764, 37.42491267, 34.14163819, 26.04327878, 24.67424289, 19.81487005, 39.99183037, 15.65113698, 15.48588288, 21.99695355, 11.3932057, 9.53588487, 82.59920741, 76.91727194, 52.15558995, 65.1389285, 64.86346035, 39.95179609, 50.56206801, 28.30843237, 67.94587424, 77.4292773, 70.11531132, 66.52304926, 48.2394396, 5.451607605, 37.85757758, 45.14566278, 55.03341481, 55.37375416, 20.08144629, 23.9564735, 43.65902828, 43.37620076, 76.07346611, 62.00927319, 59.8989675, 40.08999968, 11.52689472, 20.11132827, 12.04998646, 18.11615025, 22.48976842, 37.86674412, 35.04611475, 28.59263822, 29.60880223, 49.96550183, 109.6231391, 56.66910092, 64.98448652, 57.27517688, 46.33897512, 34.24697034, 41.92067549, 34.75033195, 39.15380885, 6.80382564, 7.126706478, 46.75492217, 35.71149416, 33.13179689, 16.75454258, 11.48277344, 7.602473566, 21.44283134, 31.20087371, 36.98183744, 32.08173043, 34.96172372, 45.646201, 31.20137394, 0, 44.12534421, 32.76834655, 14.21453479, 0.105882491, 121.1754616, 117.5662607, 107.8338149, 139.1936234, 161.1990381, 53.65867982, 50.445678, 40.21797399, 40.59197363, 29.82666119, 36.03903868, 49.32301287, 0, 32.78791896, 21.62658234, 81.93357367, 107.5331678, 88.99389531, 72.31236096, 78.8435282, 85.04757041, 96.05567924, 67.36928107, 63.30875145, 45.18526414, 49.97540112, 36.76018406, 17.22466287, 17.33912102, 22.88105614, 89.54931054, 71.32771471, 10.61373458, 8.980027998, 7.019226351, 14.90427613, 51.79107016, 36.66299993, 44.42162233, 64.785, 89.74029077, 103.5283486, 104.4809636, 104.2746661, 105.4548067, 4.752889076, 132.2200424, 130.5470949, 116.8913188, 122.9002204, 80.75552035, 90.01184419, 91.44121597, 41.44378497, 47.94628411, 35.92233011, 29.61028881, 29.22080933, 26.21917337, 79.29260265, 140.7594971, 162.3960003, 35.1063268, 41.57645048, 34.24511205, 42.93623889, 52.42116017, 41.30087377, 89.15021371, 98.37062942, 97.24443456, 97.03840614, 106.2888672, 50.43584664, 68.0202125, 57.91159996, 51.76743074, 48.89565809, 33.34139612, 37.8873247, 0, 20.39777981, 20.70007244, 18.72075848, 14.76569952, 25.3532322, 39.22864856, 55.70579676, 39.94673395, 30.30189548, 26.31403197, 56.34815427, 0, 70.59392222, 31.86926319, 57.9309353, 98.21300621, 67.75250488, 4.74270391, 36.3687668, 36.29711213, 58.06070692, 83.05237431, 49.94386008, 78.83290828, 39.508697, 170.451781, 126.9514582, 152.0566652, 152.1644605, 106.0276161, 173.6986959, 287.2259033, 23.54035009, 44.60228944, 62.9768039, 39.74592189, 43.20937801, 35.98214312, 37.94726246, 38.97228691, 32.61803919, 52.49709881, 86.81892455, 75.18996084, 79.32729108, 76.40091499, 79.78470686, 12.0648936, 62.43477526, 73.31848193, 84.93916761, 75.59363999, 68.98294078, 90.40278291, 69.27276322, 38.33966042, 61.42101889, 36.8495074, 34.02620575, 67.75355192, 37.23641805, 29.43142346, 20.58376442, 27.72963035, 67.7571676, 39.68790341, 45.38935223, 53.18127087, 58.29921463, 40.88828569, 37.66537074, 56.04089768, 67.23438482, 95.74566306, 49.86866944, 45.84850798, 62.5067336, 59.94353034, 35.21367645, 46.81395026, 50.76742077, 44.02251342, 22.10353743, 25.11771761, 22.07181064, 42.48465985, 44.10234143, 25.94843318, 34.90916012, 14.08103309, 0.717020975, 76.45412278, 132.0241123, 101.4420685, 137.9372656, 141.4358769, 2.920897871, 17.35968778, 17.81253744, 9.590774804, 11.33943063, 48.48501476, 149.1301773, 81.14977925, 4.024634044, 4.845326384, 3.107417387, 56.55817988, 75.2695585, 54.87439127, 43.77320862, 33.58018314, 38.87148161, 42.57149814, 42.42230765, 37.53067522, 39.54480329, 47.9187051, 18.53460448, 14.77267792, 3.408872053, 75.17043351, 57.34094281, 43.89236486, 32.30668695, 51.03843718, 67.47048966, 62.56180559, 59.39539491, 48.5918411, 31.88905394, 23.19461554, 24.10428089, 98.30308598, 36.79821674, 45.23857973, 45.97087187, 61.6429385, 48.09861852, 55.95834257, 47.09101177, 44.63652643, 142.5124369, 89.03559242, 119.1255967, 23.09052106, 19.15149903, 78.20568201, 109.4382897, 88.74972644, 74.65859827, 110.404936, 92.35788667, 35.72311463, 26.18382875, 15.42929546, 91.68492361, 97.18725627, 101.038436, 46.31561871, 23.51898599, 115.4252479, 130.2801053), group = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 2L, 3L, 1L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 3L, 3L, 3L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 2L, 2L, 2L, 2L, 3L, 2L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 3L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 2L, 3L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 3L, 2L), month = c(3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 12L, 18L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 3L, 6L, 12L, 0L, 0L, 3L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 0L, 3L, 0L, 0L, 3L, 0L, 3L, 6L, 12L, 0L, 0L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 12L, 18L, 0L, 3L, 12L, 18L, 0L, 3L, 6L, 0L, 3L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 0L, 0L, 0L, 3L, 6L, 12L, 3L, 3L, 0L, 3L, 0L, 3L, 6L, 0L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 0L, 3L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 3L, 6L, 12L, 18L, 0L, 0L, 0L, 0L, 3L, 6L, 0L, 3L, 0L, 3L, 0L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 0L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 0L, 0L), id = c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 4L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 7L, 7L, 7L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 10L, 10L, 10L, 11L, 11L, 11L, 11L, 12L, 12L, 12L, 12L, 13L, 13L, 13L, 13L, 14L, 14L, 14L, 14L, 14L, 15L, 15L, 15L, 15L, 15L, 16L, 16L, 16L, 16L, 16L, 17L, 17L, 18L, 18L, 18L, 19L, 20L, 20L, 21L, 21L, 21L, 21L, 21L, 22L, 22L, 23L, 24L, 24L, 24L, 24L, 25L, 25L, 25L, 25L, 25L, 26L, 26L, 26L, 26L, 26L, 27L, 27L, 28L, 28L, 28L, 29L, 29L, 29L, 29L, 29L, 30L, 30L, 30L, 30L, 31L, 31L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 35L, 35L, 35L, 36L, 37L, 38L, 39L, 40L, 40L, 40L, 40L, 40L, 41L, 42L, 42L, 42L, 42L, 42L, 43L, 43L, 43L, 43L, 44L, 44L, 44L, 44L, 45L, 45L, 45L, 46L, 46L, 47L, 47L, 47L, 47L, 48L, 48L, 48L, 48L, 49L, 49L, 49L, 50L, 50L, 50L, 50L, 50L, 51L, 52L, 52L, 52L, 52L, 53L, 54L, 55L, 55L, 55L, 55L, 56L, 57L, 58L, 58L, 59L, 59L, 59L, 60L, 61L, 62L, 63L, 63L, 63L, 63L, 63L, 64L, 64L, 64L, 64L, 64L, 65L, 65L, 66L, 67L, 67L, 68L, 68L, 68L, 68L, 68L, 69L, 69L, 70L, 70L, 70L, 70L, 70L, 71L, 71L, 72L, 72L, 72L, 72L, 73L, 74L, 75L, 76L, 76L, 76L, 77L, 77L, 78L, 78L, 79L, 80L, 81L, 82L, 82L, 82L, 82L, 82L, 83L, 84L, 85L, 85L, 85L, 86L, 86L, 86L, 87L, 87L, 87L, 87L, 87L, 88L, 88L, 88L, 88L, 88L, 89L, 90L, 91L, 91L, 91L, 91L, 91L, 92L, 93L, 93L, 93L, 93L, 93L, 94L, 94L, 95L, 95L, 95L, 96L, 96L, 96L, 96L, 96L, 97L, 97L, 97L, 97L, 97L, 98L, 99L, 99L, 99L, 100L, 100L, 100L, 100L, 101L, 101L, 101L, 101L, 102L, 103L, 103L, 103L, 104L, 104L, 104L, 104L, 105L, 106L, 106L, 106L, 106L, 107L, 107L, 108L, 109L, 109L, 110L, 110L, 110L, 111L, 111L, 111L, 112L, 112L, 112L, 113L, 113L, 113L, 114L, 114L, 115L, 116L )), X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 3, 12, 18, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 3, 0, 0, 3, 0, 3, 6, 12, 0, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 12, 18, 0, 3, 12, 18, 0, 3, 6, 0, 3, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 0, 0, 3, 6, 12, 3, 3, 0, 3, 0, 3, 6, 0, 0, 0, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 18, 0, 0, 0, 0, 3, 6, 0, 3, 0, 3, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 3, 6, 0, 3, 6, 12, 0, 3, 6, 12, 0, 0, 3, 6, 0, 3, 6, 12, 0, 0, 3, 6, 12, 0, 3, 0, 0, 3, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 0, 0), reTrms = list(Zt = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L ), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list()), theta = c(1, 0, 1), Lind = c(1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L), Gp = c(0L, 232L ), lower = c(0, -Inf, 0), Lambdat = new("dgCMatrix", i = c(0L, 0L, 1L, 2L, 2L, 3L, 4L, 4L, 5L, 6L, 6L, 7L, 8L, 8L, 9L, 10L, 10L, 11L, 12L, 12L, 13L, 14L, 14L, 15L, 16L, 16L, 17L, 18L, 18L, 19L, 20L, 20L, 21L, 22L, 22L, 23L, 24L, 24L, 25L, 26L, 26L, 27L, 28L, 28L, 29L, 30L, 30L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 36L, 36L, 37L, 38L, 38L, 39L, 40L, 40L, 41L, 42L, 42L, 43L, 44L, 44L, 45L, 46L, 46L, 47L, 48L, 48L, 49L, 50L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 56L, 56L, 57L, 58L, 58L, 59L, 60L, 60L, 61L, 62L, 62L, 63L, 64L, 64L, 65L, 66L, 66L, 67L, 68L, 68L, 69L, 70L, 70L, 71L, 72L, 72L, 73L, 74L, 74L, 75L, 76L, 76L, 77L, 78L, 78L, 79L, 80L, 80L, 81L, 82L, 82L, 83L, 84L, 84L, 85L, 86L, 86L, 87L, 88L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 94L, 94L, 95L, 96L, 96L, 97L, 98L, 98L, 99L, 100L, 100L, 101L, 102L, 102L, 103L, 104L, 104L, 105L, 106L, 106L, 107L, 108L, 108L, 109L, 110L, 110L, 111L, 112L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 118L, 118L, 119L, 120L, 120L, 121L, 122L, 122L, 123L, 124L, 124L, 125L, 126L, 126L, 127L, 128L, 128L, 129L, 130L, 130L, 131L, 132L, 132L, 133L, 134L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 140L, 140L, 141L, 142L, 142L, 143L, 144L, 144L, 145L, 146L, 146L, 147L, 148L, 148L, 149L, 150L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 156L, 157L, 158L, 158L, 159L, 160L, 160L, 161L, 162L, 162L, 163L, 164L, 164L, 165L, 166L, 166L, 167L, 168L, 168L, 169L, 170L, 170L, 171L, 172L, 172L, 173L, 174L, 174L, 175L, 176L, 176L, 177L, 178L, 178L, 179L, 180L, 180L, 181L, 182L, 182L, 183L, 184L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 190L, 190L, 191L, 192L, 192L, 193L, 194L, 194L, 195L, 196L, 196L, 197L, 198L, 198L, 199L, 200L, 200L, 201L, 202L, 202L, 203L, 204L, 204L, 205L, 206L, 206L, 207L, 208L, 208L, 209L, 210L, 210L, 211L, 212L, 212L, 213L, 214L, 214L, 215L, 216L, 216L, 217L, 218L, 218L, 219L, 220L, 220L, 221L, 222L, 222L, 223L, 224L, 224L, 225L, 226L, 226L, 227L, 228L, 228L, 229L, 230L, 230L, 231L ), p = c(0L, 1L, 3L, 4L, 6L, 7L, 9L, 10L, 12L, 13L, 15L, 16L, 18L, 19L, 21L, 22L, 24L, 25L, 27L, 28L, 30L, 31L, 33L, 34L, 36L, 37L, 39L, 40L, 42L, 43L, 45L, 46L, 48L, 49L, 51L, 52L, 54L, 55L, 57L, 58L, 60L, 61L, 63L, 64L, 66L, 67L, 69L, 70L, 72L, 73L, 75L, 76L, 78L, 79L, 81L, 82L, 84L, 85L, 87L, 88L, 90L, 91L, 93L, 94L, 96L, 97L, 99L, 100L, 102L, 103L, 105L, 106L, 108L, 109L, 111L, 112L, 114L, 115L, 117L, 118L, 120L, 121L, 123L, 124L, 126L, 127L, 129L, 130L, 132L, 133L, 135L, 136L, 138L, 139L, 141L, 142L, 144L, 145L, 147L, 148L, 150L, 151L, 153L, 154L, 156L, 157L, 159L, 160L, 162L, 163L, 165L, 166L, 168L, 169L, 171L, 172L, 174L, 175L, 177L, 178L, 180L, 181L, 183L, 184L, 186L, 187L, 189L, 190L, 192L, 193L, 195L, 196L, 198L, 199L, 201L, 202L, 204L, 205L, 207L, 208L, 210L, 211L, 213L, 214L, 216L, 217L, 219L, 220L, 222L, 223L, 225L, 226L, 228L, 229L, 231L, 232L, 234L, 235L, 237L, 238L, 240L, 241L, 243L, 244L, 246L, 247L, 249L, 250L, 252L, 253L, 255L, 256L, 258L, 259L, 261L, 262L, 264L, 265L, 267L, 268L, 270L, 271L, 273L, 274L, 276L, 277L, 279L, 280L, 282L, 283L, 285L, 286L, 288L, 289L, 291L, 292L, 294L, 295L, 297L, 298L, 300L, 301L, 303L, 304L, 306L, 307L, 309L, 310L, 312L, 313L, 315L, 316L, 318L, 319L, 321L, 322L, 324L, 325L, 327L, 328L, 330L, 331L, 333L, 334L, 336L, 337L, 339L, 340L, 342L, 343L, 345L, 346L, 348L), Dim = c(232L, 232L), Dimnames = list(NULL, NULL), x = c(1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1), factors = list()), flist = list( id = c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 4L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 7L, 7L, 7L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 10L, 10L, 10L, 11L, 11L, 11L, 11L, 12L, 12L, 12L, 12L, 13L, 13L, 13L, 13L, 14L, 14L, 14L, 14L, 14L, 15L, 15L, 15L, 15L, 15L, 16L, 16L, 16L, 16L, 16L, 17L, 17L, 18L, 18L, 18L, 19L, 20L, 20L, 21L, 21L, 21L, 21L, 21L, 22L, 22L, 23L, 24L, 24L, 24L, 24L, 25L, 25L, 25L, 25L, 25L, 26L, 26L, 26L, 26L, 26L, 27L, 27L, 28L, 28L, 28L, 29L, 29L, 29L, 29L, 29L, 30L, 30L, 30L, 30L, 31L, 31L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 35L, 35L, 35L, 36L, 37L, 38L, 39L, 40L, 40L, 40L, 40L, 40L, 41L, 42L, 42L, 42L, 42L, 42L, 43L, 43L, 43L, 43L, 44L, 44L, 44L, 44L, 45L, 45L, 45L, 46L, 46L, 47L, 47L, 47L, 47L, 48L, 48L, 48L, 48L, 49L, 49L, 49L, 50L, 50L, 50L, 50L, 50L, 51L, 52L, 52L, 52L, 52L, 53L, 54L, 55L, 55L, 55L, 55L, 56L, 57L, 58L, 58L, 59L, 59L, 59L, 60L, 61L, 62L, 63L, 63L, 63L, 63L, 63L, 64L, 64L, 64L, 64L, 64L, 65L, 65L, 66L, 67L, 67L, 68L, 68L, 68L, 68L, 68L, 69L, 69L, 70L, 70L, 70L, 70L, 70L, 71L, 71L, 72L, 72L, 72L, 72L, 73L, 74L, 75L, 76L, 76L, 76L, 77L, 77L, 78L, 78L, 79L, 80L, 81L, 82L, 82L, 82L, 82L, 82L, 83L, 84L, 85L, 85L, 85L, 86L, 86L, 86L, 87L, 87L, 87L, 87L, 87L, 88L, 88L, 88L, 88L, 88L, 89L, 90L, 91L, 91L, 91L, 91L, 91L, 92L, 93L, 93L, 93L, 93L, 93L, 94L, 94L, 95L, 95L, 95L, 96L, 96L, 96L, 96L, 96L, 97L, 97L, 97L, 97L, 97L, 98L, 99L, 99L, 99L, 100L, 100L, 100L, 100L, 101L, 101L, 101L, 101L, 102L, 103L, 103L, 103L, 104L, 104L, 104L, 104L, 105L, 106L, 106L, 106L, 106L, 107L, 107L, 108L, 109L, 109L, 110L, 110L, 110L, 111L, 111L, 111L, 112L, 112L, 112L, 113L, 113L, 113L, 114L, 114L, 115L, 116L)), cnms = list( id = c("(Intercept)", "month")), Ztlist = list(`1 + month | id` = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129" ), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list())), nl = c(id = 116L)), REML = TRUE, wmsgs = character(0), start = NULL, verbose = 0L, control = list(optimizer = "nloptwrap", restart_edge = TRUE, boundary.tol = 1e-05, calc.derivs = TRUE, use.last.params = FALSE, checkControl = list(check.nobs.vs.rankZ = "ignore", check.nobs.vs.nlev = "stop", check.nlev.gtreq.5 = "ignore", check.nlev.gtr.1 = "stop", check.nobs.vs.nRE = "stop", check.rankX = "message+drop.cols", check.scaleX = "warning", check.formula.LHS = "stop"), checkConv = list(check.conv.grad = list(action = "warning", tol = 0.002, relTol = NULL), check.conv.singular = list( action = "message", tol = 1e-04), check.conv.hess = list( action = "warning", tol = 1e-06)), optCtrl = list())) 10: do.call(mkLmerDevfun, c(lmod, list(start = start, verbose = verbose, control = control))) 11: lmer(renalfn ~ group + month + (1 + month | id), dialysis) An irrecoverable exception occurred. R is aborting now ... * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ...sh: line 1: 3524068 Segmentation fault (core dumped) '/home/th798/R/R-release/bin/R' --vanilla --no-echo > '/tmp/th798/16190373/R-release/1351/slim.Rcheck/build_vignettes.log' 2>&1 < '/tmp/th798/16190373/Rtmph883dv/file35aa5a38efbf5e' ERROR Error(s) in re-building vignettes: --- re-building 'slim.Rmd' using rmarkdown *** caught segfault *** address (nil), cause 'unknown' Traceback: 1: .Call(merPredDCreate, as(X, "matrix"), Lambdat, LamtUt, Lind, RZX, Ut, Utr, V, VtV, Vtr, Xwts, Zt, beta0, delb, delu, theta, u0) 2: initializePtr() 3: .Object$initialize(...) 4: initialize(value, ...) 5: initialize(value, ...) 6: methods::new(def, ...) 7: (new("refMethodDef", .Data = function (...) { methods::new(def, ...)}, mayCall = c("methods", "new"), name = "new", refClassName = "refGeneratorSlot", superClassMethod = ""))(Zt = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list()), theta = c(1, 0, 1), Lambdat = new("dgCMatrix", i = c(0L, 0L, 1L, 2L, 2L, 3L, 4L, 4L, 5L, 6L, 6L, 7L, 8L, 8L, 9L, 10L, 10L, 11L, 12L, 12L, 13L, 14L, 14L, 15L, 16L, 16L, 17L, 18L, 18L, 19L, 20L, 20L, 21L, 22L, 22L, 23L, 24L, 24L, 25L, 26L, 26L, 27L, 28L, 28L, 29L, 30L, 30L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 36L, 36L, 37L, 38L, 38L, 39L, 40L, 40L, 41L, 42L, 42L, 43L, 44L, 44L, 45L, 46L, 46L, 47L, 48L, 48L, 49L, 50L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 56L, 56L, 57L, 58L, 58L, 59L, 60L, 60L, 61L, 62L, 62L, 63L, 64L, 64L, 65L, 66L, 66L, 67L, 68L, 68L, 69L, 70L, 70L, 71L, 72L, 72L, 73L, 74L, 74L, 75L, 76L, 76L, 77L, 78L, 78L, 79L, 80L, 80L, 81L, 82L, 82L, 83L, 84L, 84L, 85L, 86L, 86L, 87L, 88L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 94L, 94L, 95L, 96L, 96L, 97L, 98L, 98L, 99L, 100L, 100L, 101L, 102L, 102L, 103L, 104L, 104L, 105L, 106L, 106L, 107L, 108L, 108L, 109L, 110L, 110L, 111L, 112L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 118L, 118L, 119L, 120L, 120L, 121L, 122L, 122L, 123L, 124L, 124L, 125L, 126L, 126L, 127L, 128L, 128L, 129L, 130L, 130L, 131L, 132L, 132L, 133L, 134L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 140L, 140L, 141L, 142L, 142L, 143L, 144L, 144L, 145L, 146L, 146L, 147L, 148L, 148L, 149L, 150L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 156L, 157L, 158L, 158L, 159L, 160L, 160L, 161L, 162L, 162L, 163L, 164L, 164L, 165L, 166L, 166L, 167L, 168L, 168L, 169L, 170L, 170L, 171L, 172L, 172L, 173L, 174L, 174L, 175L, 176L, 176L, 177L, 178L, 178L, 179L, 180L, 180L, 181L, 182L, 182L, 183L, 184L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 190L, 190L, 191L, 192L, 192L, 193L, 194L, 194L, 195L, 196L, 196L, 197L, 198L, 198L, 199L, 200L, 200L, 201L, 202L, 202L, 203L, 204L, 204L, 205L, 206L, 206L, 207L, 208L, 208L, 209L, 210L, 210L, 211L, 212L, 212L, 213L, 214L, 214L, 215L, 216L, 216L, 217L, 218L, 218L, 219L, 220L, 220L, 221L, 222L, 222L, 223L, 224L, 224L, 225L, 226L, 226L, 227L, 228L, 228L, 229L, 230L, 230L, 231L), p = c(0L, 1L, 3L, 4L, 6L, 7L, 9L, 10L, 12L, 13L, 15L, 16L, 18L, 19L, 21L, 22L, 24L, 25L, 27L, 28L, 30L, 31L, 33L, 34L, 36L, 37L, 39L, 40L, 42L, 43L, 45L, 46L, 48L, 49L, 51L, 52L, 54L, 55L, 57L, 58L, 60L, 61L, 63L, 64L, 66L, 67L, 69L, 70L, 72L, 73L, 75L, 76L, 78L, 79L, 81L, 82L, 84L, 85L, 87L, 88L, 90L, 91L, 93L, 94L, 96L, 97L, 99L, 100L, 102L, 103L, 105L, 106L, 108L, 109L, 111L, 112L, 114L, 115L, 117L, 118L, 120L, 121L, 123L, 124L, 126L, 127L, 129L, 130L, 132L, 133L, 135L, 136L, 138L, 139L, 141L, 142L, 144L, 145L, 147L, 148L, 150L, 151L, 153L, 154L, 156L, 157L, 159L, 160L, 162L, 163L, 165L, 166L, 168L, 169L, 171L, 172L, 174L, 175L, 177L, 178L, 180L, 181L, 183L, 184L, 186L, 187L, 189L, 190L, 192L, 193L, 195L, 196L, 198L, 199L, 201L, 202L, 204L, 205L, 207L, 208L, 210L, 211L, 213L, 214L, 216L, 217L, 219L, 220L, 222L, 223L, 225L, 226L, 228L, 229L, 231L, 232L, 234L, 235L, 237L, 238L, 240L, 241L, 243L, 244L, 246L, 247L, 249L, 250L, 252L, 253L, 255L, 256L, 258L, 259L, 261L, 262L, 264L, 265L, 267L, 268L, 270L, 271L, 273L, 274L, 276L, 277L, 279L, 280L, 282L, 283L, 285L, 286L, 288L, 289L, 291L, 292L, 294L, 295L, 297L, 298L, 300L, 301L, 303L, 304L, 306L, 307L, 309L, 310L, 312L, 313L, 315L, 316L, 318L, 319L, 321L, 322L, 324L, 325L, 327L, 328L, 330L, 331L, 333L, 334L, 336L, 337L, 339L, 340L, 342L, 343L, 345L, 346L, 348L), Dim = c(232L, 232L), Dimnames = list(NULL, NULL), x = c(1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1), factors = list()), Lind = c(1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L), n = 325L, X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 3, 12, 18, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 3, 0, 0, 3, 0, 3, 6, 12, 0, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 12, 18, 0, 3, 12, 18, 0, 3, 6, 0, 3, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 0, 0, 3, 6, 12, 3, 3, 0, 3, 0, 3, 6, 0, 0, 0, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 18, 0, 0, 0, 0, 3, 6, 0, 3, 0, 3, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 3, 6, 0, 3, 6, 12, 0, 3, 6, 12, 0, 0, 3, 6, 0, 3, 6, 12, 0, 0, 3, 6, 12, 0, 3, 0, 0, 3, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 0, 0)) 8: do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")], n = nrow(X), list(X = X))) 9: (function (fr, X, reTrms, REML = TRUE, start = NULL, verbose = 0, control = lmerControl(), ...) { p <- ncol(X) rho <- new.env(parent = parent.env(environment())) rho$pp <- do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")], n = nrow(X), list(X = X))) REMLpass <- if (REML) p else 0L rho$resp <- if (missing(fr)) mkRespMod(REML = REMLpass, ...) else mkRespMod(fr, REML = REMLpass) pp <- resp <- NULL rho$lmer_Deviance <- lmer_Deviance devfun <- function(theta) .Call(lmer_Deviance, pp$ptr(), resp$ptr(), as.double(theta)) environment(devfun) <- rho if (is.null(start) && all(reTrms$cnms == "(Intercept)") && length(reTrms$flist) == length(reTrms$lower) && !is.null(y <- model.response(fr))) { v <- sapply(reTrms$flist, function(f) var(ave(y, f))) v.e <- var(y) - sum(v) if (!is.na(v.e) && v.e > 0) { v.rel <- v/v.e if (all(v.rel >= reTrms$lower^2)) rho$pp$setTheta(sqrt(v.rel)) } } if (length(rho$resp$y) > 0) devfun(rho$pp$theta) rho$lower <- reTrms$lower devfun})(fr = list(renalfn = c(42.18586736, 49.51905287, 47.23348216, 39.73473231, 36.11415764, 37.42491267, 34.14163819, 26.04327878, 24.67424289, 19.81487005, 39.99183037, 15.65113698, 15.48588288, 21.99695355, 11.3932057, 9.53588487, 82.59920741, 76.91727194, 52.15558995, 65.1389285, 64.86346035, 39.95179609, 50.56206801, 28.30843237, 67.94587424, 77.4292773, 70.11531132, 66.52304926, 48.2394396, 5.451607605, 37.85757758, 45.14566278, 55.03341481, 55.37375416, 20.08144629, 23.9564735, 43.65902828, 43.37620076, 76.07346611, 62.00927319, 59.8989675, 40.08999968, 11.52689472, 20.11132827, 12.04998646, 18.11615025, 22.48976842, 37.86674412, 35.04611475, 28.59263822, 29.60880223, 49.96550183, 109.6231391, 56.66910092, 64.98448652, 57.27517688, 46.33897512, 34.24697034, 41.92067549, 34.75033195, 39.15380885, 6.80382564, 7.126706478, 46.75492217, 35.71149416, 33.13179689, 16.75454258, 11.48277344, 7.602473566, 21.44283134, 31.20087371, 36.98183744, 32.08173043, 34.96172372, 45.646201, 31.20137394, 0, 44.12534421, 32.76834655, 14.21453479, 0.105882491, 121.1754616, 117.5662607, 107.8338149, 139.1936234, 161.1990381, 53.65867982, 50.445678, 40.21797399, 40.59197363, 29.82666119, 36.03903868, 49.32301287, 0, 32.78791896, 21.62658234, 81.93357367, 107.5331678, 88.99389531, 72.31236096, 78.8435282, 85.04757041, 96.05567924, 67.36928107, 63.30875145, 45.18526414, 49.97540112, 36.76018406, 17.22466287, 17.33912102, 22.88105614, 89.54931054, 71.32771471, 10.61373458, 8.980027998, 7.019226351, 14.90427613, 51.79107016, 36.66299993, 44.42162233, 64.785, 89.74029077, 103.5283486, 104.4809636, 104.2746661, 105.4548067, 4.752889076, 132.2200424, 130.5470949, 116.8913188, 122.9002204, 80.75552035, 90.01184419, 91.44121597, 41.44378497, 47.94628411, 35.92233011, 29.61028881, 29.22080933, 26.21917337, 79.29260265, 140.7594971, 162.3960003, 35.1063268, 41.57645048, 34.24511205, 42.93623889, 52.42116017, 41.30087377, 89.15021371, 98.37062942, 97.24443456, 97.03840614, 106.2888672, 50.43584664, 68.0202125, 57.91159996, 51.76743074, 48.89565809, 33.34139612, 37.8873247, 0, 20.39777981, 20.70007244, 18.72075848, 14.76569952, 25.3532322, 39.22864856, 55.70579676, 39.94673395, 30.30189548, 26.31403197, 56.34815427, 0, 70.59392222, 31.86926319, 57.9309353, 98.21300621, 67.75250488, 4.74270391, 36.3687668, 36.29711213, 58.06070692, 83.05237431, 49.94386008, 78.83290828, 39.508697, 170.451781, 126.9514582, 152.0566652, 152.1644605, 106.0276161, 173.6986959, 287.2259033, 23.54035009, 44.60228944, 62.9768039, 39.74592189, 43.20937801, 35.98214312, 37.94726246, 38.97228691, 32.61803919, 52.49709881, 86.81892455, 75.18996084, 79.32729108, 76.40091499, 79.78470686, 12.0648936, 62.43477526, 73.31848193, 84.93916761, 75.59363999, 68.98294078, 90.40278291, 69.27276322, 38.33966042, 61.42101889, 36.8495074, 34.02620575, 67.75355192, 37.23641805, 29.43142346, 20.58376442, 27.72963035, 67.7571676, 39.68790341, 45.38935223, 53.18127087, 58.29921463, 40.88828569, 37.66537074, 56.04089768, 67.23438482, 95.74566306, 49.86866944, 45.84850798, 62.5067336, 59.94353034, 35.21367645, 46.81395026, 50.76742077, 44.02251342, 22.10353743, 25.11771761, 22.07181064, 42.48465985, 44.10234143, 25.94843318, 34.90916012, 14.08103309, 0.717020975, 76.45412278, 132.0241123, 101.4420685, 137.9372656, 141.4358769, 2.920897871, 17.35968778, 17.81253744, 9.590774804, 11.33943063, 48.48501476, 149.1301773, 81.14977925, 4.024634044, 4.845326384, 3.107417387, 56.55817988, 75.2695585, 54.87439127, 43.77320862, 33.58018314, 38.87148161, 42.57149814, 42.42230765, 37.53067522, 39.54480329, 47.9187051, 18.53460448, 14.77267792, 3.408872053, 75.17043351, 57.34094281, 43.89236486, 32.30668695, 51.03843718, 67.47048966, 62.56180559, 59.39539491, 48.5918411, 31.88905394, 23.19461554, 24.10428089, 98.30308598, 36.79821674, 45.23857973, 45.97087187, 61.6429385, 48.09861852, 55.95834257, 47.09101177, 44.63652643, 142.5124369, 89.03559242, 119.1255967, 23.09052106, 19.15149903, 78.20568201, 109.4382897, 88.74972644, 74.65859827, 110.404936, 92.35788667, 35.72311463, 26.18382875, 15.42929546, 91.68492361, 97.18725627, 101.038436, 46.31561871, 23.51898599, 115.4252479, 130.2801053), group = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 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12L, 18L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 0L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 0L, 0L), id = c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 4L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 7L, 7L, 7L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 10L, 10L, 10L, 11L, 11L, 11L, 11L, 12L, 12L, 12L, 12L, 13L, 13L, 13L, 13L, 14L, 14L, 14L, 14L, 14L, 15L, 15L, 15L, 15L, 15L, 16L, 16L, 16L, 16L, 16L, 17L, 17L, 18L, 18L, 18L, 19L, 20L, 20L, 21L, 21L, 21L, 21L, 21L, 22L, 22L, 23L, 24L, 24L, 24L, 24L, 25L, 25L, 25L, 25L, 25L, 26L, 26L, 26L, 26L, 26L, 27L, 27L, 28L, 28L, 28L, 29L, 29L, 29L, 29L, 29L, 30L, 30L, 30L, 30L, 31L, 31L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 35L, 35L, 35L, 36L, 37L, 38L, 39L, 40L, 40L, 40L, 40L, 40L, 41L, 42L, 42L, 42L, 42L, 42L, 43L, 43L, 43L, 43L, 44L, 44L, 44L, 44L, 45L, 45L, 45L, 46L, 46L, 47L, 47L, 47L, 47L, 48L, 48L, 48L, 48L, 49L, 49L, 49L, 50L, 50L, 50L, 50L, 50L, 51L, 52L, 52L, 52L, 52L, 53L, 54L, 55L, 55L, 55L, 55L, 56L, 57L, 58L, 58L, 59L, 59L, 59L, 60L, 61L, 62L, 63L, 63L, 63L, 63L, 63L, 64L, 64L, 64L, 64L, 64L, 65L, 65L, 66L, 67L, 67L, 68L, 68L, 68L, 68L, 68L, 69L, 69L, 70L, 70L, 70L, 70L, 70L, 71L, 71L, 72L, 72L, 72L, 72L, 73L, 74L, 75L, 76L, 76L, 76L, 77L, 77L, 78L, 78L, 79L, 80L, 81L, 82L, 82L, 82L, 82L, 82L, 83L, 84L, 85L, 85L, 85L, 86L, 86L, 86L, 87L, 87L, 87L, 87L, 87L, 88L, 88L, 88L, 88L, 88L, 89L, 90L, 91L, 91L, 91L, 91L, 91L, 92L, 93L, 93L, 93L, 93L, 93L, 94L, 94L, 95L, 95L, 95L, 96L, 96L, 96L, 96L, 96L, 97L, 97L, 97L, 97L, 97L, 98L, 99L, 99L, 99L, 100L, 100L, 100L, 100L, 101L, 101L, 101L, 101L, 102L, 103L, 103L, 103L, 104L, 104L, 104L, 104L, 105L, 106L, 106L, 106L, 106L, 107L, 107L, 108L, 109L, 109L, 110L, 110L, 110L, 111L, 111L, 111L, 112L, 112L, 112L, 113L, 113L, 113L, 114L, 114L, 115L, 116L )), X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 3, 12, 18, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 3, 0, 0, 3, 0, 3, 6, 12, 0, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 12, 18, 0, 3, 12, 18, 0, 3, 6, 0, 3, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 0, 0, 3, 6, 12, 3, 3, 0, 3, 0, 3, 6, 0, 0, 0, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 18, 0, 0, 0, 0, 3, 6, 0, 3, 0, 3, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 3, 6, 0, 3, 6, 12, 0, 3, 6, 12, 0, 0, 3, 6, 0, 3, 6, 12, 0, 0, 3, 6, 12, 0, 3, 0, 0, 3, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 0, 0), reTrms = list(Zt = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L ), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list()), theta = c(1, 0, 1), Lind = c(1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L), Gp = c(0L, 232L ), lower = c(0, -Inf, 0), Lambdat = new("dgCMatrix", i = c(0L, 0L, 1L, 2L, 2L, 3L, 4L, 4L, 5L, 6L, 6L, 7L, 8L, 8L, 9L, 10L, 10L, 11L, 12L, 12L, 13L, 14L, 14L, 15L, 16L, 16L, 17L, 18L, 18L, 19L, 20L, 20L, 21L, 22L, 22L, 23L, 24L, 24L, 25L, 26L, 26L, 27L, 28L, 28L, 29L, 30L, 30L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 36L, 36L, 37L, 38L, 38L, 39L, 40L, 40L, 41L, 42L, 42L, 43L, 44L, 44L, 45L, 46L, 46L, 47L, 48L, 48L, 49L, 50L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 56L, 56L, 57L, 58L, 58L, 59L, 60L, 60L, 61L, 62L, 62L, 63L, 64L, 64L, 65L, 66L, 66L, 67L, 68L, 68L, 69L, 70L, 70L, 71L, 72L, 72L, 73L, 74L, 74L, 75L, 76L, 76L, 77L, 78L, 78L, 79L, 80L, 80L, 81L, 82L, 82L, 83L, 84L, 84L, 85L, 86L, 86L, 87L, 88L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 94L, 94L, 95L, 96L, 96L, 97L, 98L, 98L, 99L, 100L, 100L, 101L, 102L, 102L, 103L, 104L, 104L, 105L, 106L, 106L, 107L, 108L, 108L, 109L, 110L, 110L, 111L, 112L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 118L, 118L, 119L, 120L, 120L, 121L, 122L, 122L, 123L, 124L, 124L, 125L, 126L, 126L, 127L, 128L, 128L, 129L, 130L, 130L, 131L, 132L, 132L, 133L, 134L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 140L, 140L, 141L, 142L, 142L, 143L, 144L, 144L, 145L, 146L, 146L, 147L, 148L, 148L, 149L, 150L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 156L, 157L, 158L, 158L, 159L, 160L, 160L, 161L, 162L, 162L, 163L, 164L, 164L, 165L, 166L, 166L, 167L, 168L, 168L, 169L, 170L, 170L, 171L, 172L, 172L, 173L, 174L, 174L, 175L, 176L, 176L, 177L, 178L, 178L, 179L, 180L, 180L, 181L, 182L, 182L, 183L, 184L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 190L, 190L, 191L, 192L, 192L, 193L, 194L, 194L, 195L, 196L, 196L, 197L, 198L, 198L, 199L, 200L, 200L, 201L, 202L, 202L, 203L, 204L, 204L, 205L, 206L, 206L, 207L, 208L, 208L, 209L, 210L, 210L, 211L, 212L, 212L, 213L, 214L, 214L, 215L, 216L, 216L, 217L, 218L, 218L, 219L, 220L, 220L, 221L, 222L, 222L, 223L, 224L, 224L, 225L, 226L, 226L, 227L, 228L, 228L, 229L, 230L, 230L, 231L ), p = c(0L, 1L, 3L, 4L, 6L, 7L, 9L, 10L, 12L, 13L, 15L, 16L, 18L, 19L, 21L, 22L, 24L, 25L, 27L, 28L, 30L, 31L, 33L, 34L, 36L, 37L, 39L, 40L, 42L, 43L, 45L, 46L, 48L, 49L, 51L, 52L, 54L, 55L, 57L, 58L, 60L, 61L, 63L, 64L, 66L, 67L, 69L, 70L, 72L, 73L, 75L, 76L, 78L, 79L, 81L, 82L, 84L, 85L, 87L, 88L, 90L, 91L, 93L, 94L, 96L, 97L, 99L, 100L, 102L, 103L, 105L, 106L, 108L, 109L, 111L, 112L, 114L, 115L, 117L, 118L, 120L, 121L, 123L, 124L, 126L, 127L, 129L, 130L, 132L, 133L, 135L, 136L, 138L, 139L, 141L, 142L, 144L, 145L, 147L, 148L, 150L, 151L, 153L, 154L, 156L, 157L, 159L, 160L, 162L, 163L, 165L, 166L, 168L, 169L, 171L, 172L, 174L, 175L, 177L, 178L, 180L, 181L, 183L, 184L, 186L, 187L, 189L, 190L, 192L, 193L, 195L, 196L, 198L, 199L, 201L, 202L, 204L, 205L, 207L, 208L, 210L, 211L, 213L, 214L, 216L, 217L, 219L, 220L, 222L, 223L, 225L, 226L, 228L, 229L, 231L, 232L, 234L, 235L, 237L, 238L, 240L, 241L, 243L, 244L, 246L, 247L, 249L, 250L, 252L, 253L, 255L, 256L, 258L, 259L, 261L, 262L, 264L, 265L, 267L, 268L, 270L, 271L, 273L, 274L, 276L, 277L, 279L, 280L, 282L, 283L, 285L, 286L, 288L, 289L, 291L, 292L, 294L, 295L, 297L, 298L, 300L, 301L, 303L, 304L, 306L, 307L, 309L, 310L, 312L, 313L, 315L, 316L, 318L, 319L, 321L, 322L, 324L, 325L, 327L, 328L, 330L, 331L, 333L, 334L, 336L, 337L, 339L, 340L, 342L, 343L, 345L, 346L, 348L), Dim = c(232L, 232L), Dimnames = list(NULL, NULL), x = c(1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1), factors = list()), flist = list( id = c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 4L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 7L, 7L, 7L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 10L, 10L, 10L, 11L, 11L, 11L, 11L, 12L, 12L, 12L, 12L, 13L, 13L, 13L, 13L, 14L, 14L, 14L, 14L, 14L, 15L, 15L, 15L, 15L, 15L, 16L, 16L, 16L, 16L, 16L, 17L, 17L, 18L, 18L, 18L, 19L, 20L, 20L, 21L, 21L, 21L, 21L, 21L, 22L, 22L, 23L, 24L, 24L, 24L, 24L, 25L, 25L, 25L, 25L, 25L, 26L, 26L, 26L, 26L, 26L, 27L, 27L, 28L, 28L, 28L, 29L, 29L, 29L, 29L, 29L, 30L, 30L, 30L, 30L, 31L, 31L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 35L, 35L, 35L, 36L, 37L, 38L, 39L, 40L, 40L, 40L, 40L, 40L, 41L, 42L, 42L, 42L, 42L, 42L, 43L, 43L, 43L, 43L, 44L, 44L, 44L, 44L, 45L, 45L, 45L, 46L, 46L, 47L, 47L, 47L, 47L, 48L, 48L, 48L, 48L, 49L, 49L, 49L, 50L, 50L, 50L, 50L, 50L, 51L, 52L, 52L, 52L, 52L, 53L, 54L, 55L, 55L, 55L, 55L, 56L, 57L, 58L, 58L, 59L, 59L, 59L, 60L, 61L, 62L, 63L, 63L, 63L, 63L, 63L, 64L, 64L, 64L, 64L, 64L, 65L, 65L, 66L, 67L, 67L, 68L, 68L, 68L, 68L, 68L, 69L, 69L, 70L, 70L, 70L, 70L, 70L, 71L, 71L, 72L, 72L, 72L, 72L, 73L, 74L, 75L, 76L, 76L, 76L, 77L, 77L, 78L, 78L, 79L, 80L, 81L, 82L, 82L, 82L, 82L, 82L, 83L, 84L, 85L, 85L, 85L, 86L, 86L, 86L, 87L, 87L, 87L, 87L, 87L, 88L, 88L, 88L, 88L, 88L, 89L, 90L, 91L, 91L, 91L, 91L, 91L, 92L, 93L, 93L, 93L, 93L, 93L, 94L, 94L, 95L, 95L, 95L, 96L, 96L, 96L, 96L, 96L, 97L, 97L, 97L, 97L, 97L, 98L, 99L, 99L, 99L, 100L, 100L, 100L, 100L, 101L, 101L, 101L, 101L, 102L, 103L, 103L, 103L, 104L, 104L, 104L, 104L, 105L, 106L, 106L, 106L, 106L, 107L, 107L, 108L, 109L, 109L, 110L, 110L, 110L, 111L, 111L, 111L, 112L, 112L, 112L, 113L, 113L, 113L, 114L, 114L, 115L, 116L)), cnms = list( id = c("(Intercept)", "month")), Ztlist = list(`1 + month | id` = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129" ), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list())), nl = c(id = 116L)), REML = TRUE, wmsgs = character(0), start = NULL, verbose = 0L, control = list(optimizer = "nloptwrap", restart_edge = TRUE, boundary.tol = 1e-05, calc.derivs = TRUE, use.last.params = FALSE, checkControl = list(check.nobs.vs.rankZ = "ignore", check.nobs.vs.nlev = "stop", check.nlev.gtreq.5 = "ignore", check.nlev.gtr.1 = "stop", check.nobs.vs.nRE = "stop", check.rankX = "message+drop.cols", check.scaleX = "warning", check.formula.LHS = "stop"), checkConv = list(check.conv.grad = list(action = "warning", tol = 0.002, relTol = NULL), check.conv.singular = list( action = "message", tol = 1e-04), check.conv.hess = list( action = "warning", tol = 1e-06)), optCtrl = list())) 10: do.call(mkLmerDevfun, c(lmod, list(start = start, verbose = verbose, control = control))) 11: lmer(renalfn ~ group + month + (1 + month | id), dialysis) 12: eval(expr, envir, enclos) 13: eval(expr, envir, enclos) 14: eval_with_user_handlers(expr, envir, enclos, user_handlers) 15: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)) 16: withCallingHandlers(withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)), warning = wHandler, error = eHandler, message = mHandler) 17: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)), warning = wHandler, error = eHandler, message = mHandler)) 18: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)), warning = wHandler, error = eHandler, message = mHandler))) 19: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, log_echo = log_echo, log_warning = log_warning, output_handler = output_handler, include_timing = include_timing) 20: evaluate::evaluate(...) 21: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)) 22: in_dir(input_dir(), expr) 23: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))) 24: eng_r(options) 25: block_exec(params) 26: call_block(x) 27: process_group(group) 28: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)) 29: withCallingHandlers(expr, error = function(e) { loc = if (is.function(fun)) trimws(fun(label)) else "" if (loc != "") loc = sprintf(" at lines %s", loc) message(one_string(handler(e, loc)))}) 30: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)), function(e, loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from lines ", loc) }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) 31: process_file(text, output) 32: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 33: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) 34: vweave_rmarkdown(...) 35: engine$weave(file, quiet = quiet, encoding = enc) 36: doTryCatch(return(expr), name, parentenv, handler) 37: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 38: tryCatchList(expr, classes, parentenv, handlers) 39: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) 40: tools::buildVignettes(dir = "/tmp/th798/16190373/R-release/1351/slim.Rcheck/vign_test/slim", skip = TRUE, ser_elibs = "/tmp/th798/16190373/Rtmph883dv/file35aa5a14ab8871.rds") An irrecoverable exception occurred. R is aborting now ... * checking PDF version of manual ... OK * DONE Status: 2 ERRORs, 1 NOTE See '/tmp/th798/16190373/R-release/1351/slim.Rcheck/00check.log' for details. [1] "2025-03-30 01:11:38 MST" [1] "2025-03-30 01:11:38 MST" Installing package into '/tmp/th798/16190373/R-release/1351/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/16190373/R-release/1351/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-03-30 01:12:03 MST" * using log directory '/tmp/th798/16190373/R-release/1351/slim.Rcheck' * using R version 4.4.3 (2025-02-28) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'slim/DESCRIPTION' ... OK * this is package 'slim' version '0.1.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'slim' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) fit_slim.Rd:24: Lost braces; missing escapes or markup? 24 | sum(x' V^{-1} (y - x beta)) = 0 as the covariance V tends from V[, , 1] + | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ...sh: line 1: 3535508 Segmentation fault (core dumped) LANGUAGE=en _R_CHECK_INTERNALS2_=1 '/home/th798/R/R-release/bin/R' --vanilla > 'slim-Ex.Rout' 2>&1 < 'slim-Ex.R' ERROR Running examples in 'slim-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: slim > ### Title: Fit Singular Linear Models > ### Aliases: slim > > ### ** Examples > > slim_fit <- slim(renalfn ~ group + month, dialysis) > summary(slim_fit) Singular Linear Model Fit Call: slim(formula = renalfn ~ group + month, data = dialysis) Estimate Std. Error z value Pr(>|z|) (Intercept) 37.4212 4.5476 8.229 < 2e-16 *** groupB1 19.5866 8.4709 2.312 0.020766 * groupB2 25.1858 7.0129 3.591 0.000329 *** month -0.4941 0.2694 -1.834 0.066664 . --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 > > if(require("lme4")) { + lmer_fit <- lmer(renalfn ~ group + month + (1 + month | id), dialysis) + slim_fit <- slim(renalfn ~ 1 + group + month, dialysis, covariance = lmer_fit) + summary(slim_fit) + summary(slim_fit, empirical = FALSE) + } Loading required package: lme4 Loading required package: Matrix Warning in check_dep_version() : ABI version mismatch: lme4 was built with Matrix ABI version 1 Current Matrix ABI version is 2 Please re-install lme4 from source or restore original 'Matrix' package *** caught segfault *** address (nil), cause 'unknown' Traceback: 1: .Call(merPredDCreate, as(X, "matrix"), Lambdat, LamtUt, Lind, RZX, Ut, Utr, V, VtV, Vtr, Xwts, Zt, beta0, delb, delu, theta, u0) 2: initializePtr() 3: .Object$initialize(...) 4: initialize(value, ...) 5: initialize(value, ...) 6: methods::new(def, ...) 7: (new("refMethodDef", .Data = function (...) { methods::new(def, ...)}, mayCall = c("methods", "new"), name = "new", refClassName = "refGeneratorSlot", superClassMethod = ""))(Zt = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list()), theta = c(1, 0, 1), Lambdat = new("dgCMatrix", i = c(0L, 0L, 1L, 2L, 2L, 3L, 4L, 4L, 5L, 6L, 6L, 7L, 8L, 8L, 9L, 10L, 10L, 11L, 12L, 12L, 13L, 14L, 14L, 15L, 16L, 16L, 17L, 18L, 18L, 19L, 20L, 20L, 21L, 22L, 22L, 23L, 24L, 24L, 25L, 26L, 26L, 27L, 28L, 28L, 29L, 30L, 30L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 36L, 36L, 37L, 38L, 38L, 39L, 40L, 40L, 41L, 42L, 42L, 43L, 44L, 44L, 45L, 46L, 46L, 47L, 48L, 48L, 49L, 50L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 56L, 56L, 57L, 58L, 58L, 59L, 60L, 60L, 61L, 62L, 62L, 63L, 64L, 64L, 65L, 66L, 66L, 67L, 68L, 68L, 69L, 70L, 70L, 71L, 72L, 72L, 73L, 74L, 74L, 75L, 76L, 76L, 77L, 78L, 78L, 79L, 80L, 80L, 81L, 82L, 82L, 83L, 84L, 84L, 85L, 86L, 86L, 87L, 88L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 94L, 94L, 95L, 96L, 96L, 97L, 98L, 98L, 99L, 100L, 100L, 101L, 102L, 102L, 103L, 104L, 104L, 105L, 106L, 106L, 107L, 108L, 108L, 109L, 110L, 110L, 111L, 112L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 118L, 118L, 119L, 120L, 120L, 121L, 122L, 122L, 123L, 124L, 124L, 125L, 126L, 126L, 127L, 128L, 128L, 129L, 130L, 130L, 131L, 132L, 132L, 133L, 134L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 140L, 140L, 141L, 142L, 142L, 143L, 144L, 144L, 145L, 146L, 146L, 147L, 148L, 148L, 149L, 150L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 156L, 157L, 158L, 158L, 159L, 160L, 160L, 161L, 162L, 162L, 163L, 164L, 164L, 165L, 166L, 166L, 167L, 168L, 168L, 169L, 170L, 170L, 171L, 172L, 172L, 173L, 174L, 174L, 175L, 176L, 176L, 177L, 178L, 178L, 179L, 180L, 180L, 181L, 182L, 182L, 183L, 184L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 190L, 190L, 191L, 192L, 192L, 193L, 194L, 194L, 195L, 196L, 196L, 197L, 198L, 198L, 199L, 200L, 200L, 201L, 202L, 202L, 203L, 204L, 204L, 205L, 206L, 206L, 207L, 208L, 208L, 209L, 210L, 210L, 211L, 212L, 212L, 213L, 214L, 214L, 215L, 216L, 216L, 217L, 218L, 218L, 219L, 220L, 220L, 221L, 222L, 222L, 223L, 224L, 224L, 225L, 226L, 226L, 227L, 228L, 228L, 229L, 230L, 230L, 231L), p = c(0L, 1L, 3L, 4L, 6L, 7L, 9L, 10L, 12L, 13L, 15L, 16L, 18L, 19L, 21L, 22L, 24L, 25L, 27L, 28L, 30L, 31L, 33L, 34L, 36L, 37L, 39L, 40L, 42L, 43L, 45L, 46L, 48L, 49L, 51L, 52L, 54L, 55L, 57L, 58L, 60L, 61L, 63L, 64L, 66L, 67L, 69L, 70L, 72L, 73L, 75L, 76L, 78L, 79L, 81L, 82L, 84L, 85L, 87L, 88L, 90L, 91L, 93L, 94L, 96L, 97L, 99L, 100L, 102L, 103L, 105L, 106L, 108L, 109L, 111L, 112L, 114L, 115L, 117L, 118L, 120L, 121L, 123L, 124L, 126L, 127L, 129L, 130L, 132L, 133L, 135L, 136L, 138L, 139L, 141L, 142L, 144L, 145L, 147L, 148L, 150L, 151L, 153L, 154L, 156L, 157L, 159L, 160L, 162L, 163L, 165L, 166L, 168L, 169L, 171L, 172L, 174L, 175L, 177L, 178L, 180L, 181L, 183L, 184L, 186L, 187L, 189L, 190L, 192L, 193L, 195L, 196L, 198L, 199L, 201L, 202L, 204L, 205L, 207L, 208L, 210L, 211L, 213L, 214L, 216L, 217L, 219L, 220L, 222L, 223L, 225L, 226L, 228L, 229L, 231L, 232L, 234L, 235L, 237L, 238L, 240L, 241L, 243L, 244L, 246L, 247L, 249L, 250L, 252L, 253L, 255L, 256L, 258L, 259L, 261L, 262L, 264L, 265L, 267L, 268L, 270L, 271L, 273L, 274L, 276L, 277L, 279L, 280L, 282L, 283L, 285L, 286L, 288L, 289L, 291L, 292L, 294L, 295L, 297L, 298L, 300L, 301L, 303L, 304L, 306L, 307L, 309L, 310L, 312L, 313L, 315L, 316L, 318L, 319L, 321L, 322L, 324L, 325L, 327L, 328L, 330L, 331L, 333L, 334L, 336L, 337L, 339L, 340L, 342L, 343L, 345L, 346L, 348L), Dim = c(232L, 232L), Dimnames = list(NULL, NULL), x = c(1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1), factors = list()), Lind = c(1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L), n = 325L, X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 3, 12, 18, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 3, 0, 0, 3, 0, 3, 6, 12, 0, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 12, 18, 0, 3, 12, 18, 0, 3, 6, 0, 3, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 0, 0, 3, 6, 12, 3, 3, 0, 3, 0, 3, 6, 0, 0, 0, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 18, 0, 0, 0, 0, 3, 6, 0, 3, 0, 3, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 3, 6, 0, 3, 6, 12, 0, 3, 6, 12, 0, 0, 3, 6, 0, 3, 6, 12, 0, 0, 3, 6, 12, 0, 3, 0, 0, 3, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 0, 0)) 8: do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")], n = nrow(X), list(X = X))) 9: (function (fr, X, reTrms, REML = TRUE, start = NULL, verbose = 0, control = lmerControl(), ...) { p <- ncol(X) rho <- new.env(parent = parent.env(environment())) rho$pp <- do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")], n = nrow(X), list(X = X))) REMLpass <- if (REML) p else 0L rho$resp <- if (missing(fr)) mkRespMod(REML = REMLpass, ...) else mkRespMod(fr, REML = REMLpass) pp <- resp <- NULL rho$lmer_Deviance <- lmer_Deviance devfun <- function(theta) .Call(lmer_Deviance, pp$ptr(), resp$ptr(), as.double(theta)) environment(devfun) <- rho if (is.null(start) && all(reTrms$cnms == "(Intercept)") && length(reTrms$flist) == length(reTrms$lower) && !is.null(y <- model.response(fr))) { v <- sapply(reTrms$flist, function(f) var(ave(y, f))) v.e <- var(y) - sum(v) if (!is.na(v.e) && v.e > 0) { v.rel <- v/v.e if (all(v.rel >= reTrms$lower^2)) rho$pp$setTheta(sqrt(v.rel)) } } if (length(rho$resp$y) > 0) devfun(rho$pp$theta) rho$lower <- reTrms$lower devfun})(fr = list(renalfn = c(42.18586736, 49.51905287, 47.23348216, 39.73473231, 36.11415764, 37.42491267, 34.14163819, 26.04327878, 24.67424289, 19.81487005, 39.99183037, 15.65113698, 15.48588288, 21.99695355, 11.3932057, 9.53588487, 82.59920741, 76.91727194, 52.15558995, 65.1389285, 64.86346035, 39.95179609, 50.56206801, 28.30843237, 67.94587424, 77.4292773, 70.11531132, 66.52304926, 48.2394396, 5.451607605, 37.85757758, 45.14566278, 55.03341481, 55.37375416, 20.08144629, 23.9564735, 43.65902828, 43.37620076, 76.07346611, 62.00927319, 59.8989675, 40.08999968, 11.52689472, 20.11132827, 12.04998646, 18.11615025, 22.48976842, 37.86674412, 35.04611475, 28.59263822, 29.60880223, 49.96550183, 109.6231391, 56.66910092, 64.98448652, 57.27517688, 46.33897512, 34.24697034, 41.92067549, 34.75033195, 39.15380885, 6.80382564, 7.126706478, 46.75492217, 35.71149416, 33.13179689, 16.75454258, 11.48277344, 7.602473566, 21.44283134, 31.20087371, 36.98183744, 32.08173043, 34.96172372, 45.646201, 31.20137394, 0, 44.12534421, 32.76834655, 14.21453479, 0.105882491, 121.1754616, 117.5662607, 107.8338149, 139.1936234, 161.1990381, 53.65867982, 50.445678, 40.21797399, 40.59197363, 29.82666119, 36.03903868, 49.32301287, 0, 32.78791896, 21.62658234, 81.93357367, 107.5331678, 88.99389531, 72.31236096, 78.8435282, 85.04757041, 96.05567924, 67.36928107, 63.30875145, 45.18526414, 49.97540112, 36.76018406, 17.22466287, 17.33912102, 22.88105614, 89.54931054, 71.32771471, 10.61373458, 8.980027998, 7.019226351, 14.90427613, 51.79107016, 36.66299993, 44.42162233, 64.785, 89.74029077, 103.5283486, 104.4809636, 104.2746661, 105.4548067, 4.752889076, 132.2200424, 130.5470949, 116.8913188, 122.9002204, 80.75552035, 90.01184419, 91.44121597, 41.44378497, 47.94628411, 35.92233011, 29.61028881, 29.22080933, 26.21917337, 79.29260265, 140.7594971, 162.3960003, 35.1063268, 41.57645048, 34.24511205, 42.93623889, 52.42116017, 41.30087377, 89.15021371, 98.37062942, 97.24443456, 97.03840614, 106.2888672, 50.43584664, 68.0202125, 57.91159996, 51.76743074, 48.89565809, 33.34139612, 37.8873247, 0, 20.39777981, 20.70007244, 18.72075848, 14.76569952, 25.3532322, 39.22864856, 55.70579676, 39.94673395, 30.30189548, 26.31403197, 56.34815427, 0, 70.59392222, 31.86926319, 57.9309353, 98.21300621, 67.75250488, 4.74270391, 36.3687668, 36.29711213, 58.06070692, 83.05237431, 49.94386008, 78.83290828, 39.508697, 170.451781, 126.9514582, 152.0566652, 152.1644605, 106.0276161, 173.6986959, 287.2259033, 23.54035009, 44.60228944, 62.9768039, 39.74592189, 43.20937801, 35.98214312, 37.94726246, 38.97228691, 32.61803919, 52.49709881, 86.81892455, 75.18996084, 79.32729108, 76.40091499, 79.78470686, 12.0648936, 62.43477526, 73.31848193, 84.93916761, 75.59363999, 68.98294078, 90.40278291, 69.27276322, 38.33966042, 61.42101889, 36.8495074, 34.02620575, 67.75355192, 37.23641805, 29.43142346, 20.58376442, 27.72963035, 67.7571676, 39.68790341, 45.38935223, 53.18127087, 58.29921463, 40.88828569, 37.66537074, 56.04089768, 67.23438482, 95.74566306, 49.86866944, 45.84850798, 62.5067336, 59.94353034, 35.21367645, 46.81395026, 50.76742077, 44.02251342, 22.10353743, 25.11771761, 22.07181064, 42.48465985, 44.10234143, 25.94843318, 34.90916012, 14.08103309, 0.717020975, 76.45412278, 132.0241123, 101.4420685, 137.9372656, 141.4358769, 2.920897871, 17.35968778, 17.81253744, 9.590774804, 11.33943063, 48.48501476, 149.1301773, 81.14977925, 4.024634044, 4.845326384, 3.107417387, 56.55817988, 75.2695585, 54.87439127, 43.77320862, 33.58018314, 38.87148161, 42.57149814, 42.42230765, 37.53067522, 39.54480329, 47.9187051, 18.53460448, 14.77267792, 3.408872053, 75.17043351, 57.34094281, 43.89236486, 32.30668695, 51.03843718, 67.47048966, 62.56180559, 59.39539491, 48.5918411, 31.88905394, 23.19461554, 24.10428089, 98.30308598, 36.79821674, 45.23857973, 45.97087187, 61.6429385, 48.09861852, 55.95834257, 47.09101177, 44.63652643, 142.5124369, 89.03559242, 119.1255967, 23.09052106, 19.15149903, 78.20568201, 109.4382897, 88.74972644, 74.65859827, 110.404936, 92.35788667, 35.72311463, 26.18382875, 15.42929546, 91.68492361, 97.18725627, 101.038436, 46.31561871, 23.51898599, 115.4252479, 130.2801053), group = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 2L, 3L, 1L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 3L, 3L, 3L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 2L, 2L, 2L, 2L, 3L, 2L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 3L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 2L, 3L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 3L, 2L), month = c(3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 12L, 18L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 3L, 6L, 12L, 0L, 0L, 3L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 0L, 3L, 0L, 0L, 3L, 0L, 3L, 6L, 12L, 0L, 0L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 12L, 18L, 0L, 3L, 12L, 18L, 0L, 3L, 6L, 0L, 3L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 0L, 0L, 0L, 3L, 6L, 12L, 3L, 3L, 0L, 3L, 0L, 3L, 6L, 0L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 0L, 3L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 3L, 6L, 12L, 18L, 0L, 0L, 0L, 0L, 3L, 6L, 0L, 3L, 0L, 3L, 0L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 0L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 0L, 0L), id = c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 4L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 7L, 7L, 7L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 10L, 10L, 10L, 11L, 11L, 11L, 11L, 12L, 12L, 12L, 12L, 13L, 13L, 13L, 13L, 14L, 14L, 14L, 14L, 14L, 15L, 15L, 15L, 15L, 15L, 16L, 16L, 16L, 16L, 16L, 17L, 17L, 18L, 18L, 18L, 19L, 20L, 20L, 21L, 21L, 21L, 21L, 21L, 22L, 22L, 23L, 24L, 24L, 24L, 24L, 25L, 25L, 25L, 25L, 25L, 26L, 26L, 26L, 26L, 26L, 27L, 27L, 28L, 28L, 28L, 29L, 29L, 29L, 29L, 29L, 30L, 30L, 30L, 30L, 31L, 31L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 35L, 35L, 35L, 36L, 37L, 38L, 39L, 40L, 40L, 40L, 40L, 40L, 41L, 42L, 42L, 42L, 42L, 42L, 43L, 43L, 43L, 43L, 44L, 44L, 44L, 44L, 45L, 45L, 45L, 46L, 46L, 47L, 47L, 47L, 47L, 48L, 48L, 48L, 48L, 49L, 49L, 49L, 50L, 50L, 50L, 50L, 50L, 51L, 52L, 52L, 52L, 52L, 53L, 54L, 55L, 55L, 55L, 55L, 56L, 57L, 58L, 58L, 59L, 59L, 59L, 60L, 61L, 62L, 63L, 63L, 63L, 63L, 63L, 64L, 64L, 64L, 64L, 64L, 65L, 65L, 66L, 67L, 67L, 68L, 68L, 68L, 68L, 68L, 69L, 69L, 70L, 70L, 70L, 70L, 70L, 71L, 71L, 72L, 72L, 72L, 72L, 73L, 74L, 75L, 76L, 76L, 76L, 77L, 77L, 78L, 78L, 79L, 80L, 81L, 82L, 82L, 82L, 82L, 82L, 83L, 84L, 85L, 85L, 85L, 86L, 86L, 86L, 87L, 87L, 87L, 87L, 87L, 88L, 88L, 88L, 88L, 88L, 89L, 90L, 91L, 91L, 91L, 91L, 91L, 92L, 93L, 93L, 93L, 93L, 93L, 94L, 94L, 95L, 95L, 95L, 96L, 96L, 96L, 96L, 96L, 97L, 97L, 97L, 97L, 97L, 98L, 99L, 99L, 99L, 100L, 100L, 100L, 100L, 101L, 101L, 101L, 101L, 102L, 103L, 103L, 103L, 104L, 104L, 104L, 104L, 105L, 106L, 106L, 106L, 106L, 107L, 107L, 108L, 109L, 109L, 110L, 110L, 110L, 111L, 111L, 111L, 112L, 112L, 112L, 113L, 113L, 113L, 114L, 114L, 115L, 116L )), X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 3, 12, 18, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 3, 0, 0, 3, 0, 3, 6, 12, 0, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 12, 18, 0, 3, 12, 18, 0, 3, 6, 0, 3, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 0, 0, 3, 6, 12, 3, 3, 0, 3, 0, 3, 6, 0, 0, 0, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 18, 0, 0, 0, 0, 3, 6, 0, 3, 0, 3, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 3, 6, 0, 3, 6, 12, 0, 3, 6, 12, 0, 0, 3, 6, 0, 3, 6, 12, 0, 0, 3, 6, 12, 0, 3, 0, 0, 3, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 0, 0), reTrms = list(Zt = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L ), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list()), theta = c(1, 0, 1), Lind = c(1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L), Gp = c(0L, 232L ), lower = c(0, -Inf, 0), Lambdat = new("dgCMatrix", i = c(0L, 0L, 1L, 2L, 2L, 3L, 4L, 4L, 5L, 6L, 6L, 7L, 8L, 8L, 9L, 10L, 10L, 11L, 12L, 12L, 13L, 14L, 14L, 15L, 16L, 16L, 17L, 18L, 18L, 19L, 20L, 20L, 21L, 22L, 22L, 23L, 24L, 24L, 25L, 26L, 26L, 27L, 28L, 28L, 29L, 30L, 30L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 36L, 36L, 37L, 38L, 38L, 39L, 40L, 40L, 41L, 42L, 42L, 43L, 44L, 44L, 45L, 46L, 46L, 47L, 48L, 48L, 49L, 50L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 56L, 56L, 57L, 58L, 58L, 59L, 60L, 60L, 61L, 62L, 62L, 63L, 64L, 64L, 65L, 66L, 66L, 67L, 68L, 68L, 69L, 70L, 70L, 71L, 72L, 72L, 73L, 74L, 74L, 75L, 76L, 76L, 77L, 78L, 78L, 79L, 80L, 80L, 81L, 82L, 82L, 83L, 84L, 84L, 85L, 86L, 86L, 87L, 88L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 94L, 94L, 95L, 96L, 96L, 97L, 98L, 98L, 99L, 100L, 100L, 101L, 102L, 102L, 103L, 104L, 104L, 105L, 106L, 106L, 107L, 108L, 108L, 109L, 110L, 110L, 111L, 112L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 118L, 118L, 119L, 120L, 120L, 121L, 122L, 122L, 123L, 124L, 124L, 125L, 126L, 126L, 127L, 128L, 128L, 129L, 130L, 130L, 131L, 132L, 132L, 133L, 134L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 140L, 140L, 141L, 142L, 142L, 143L, 144L, 144L, 145L, 146L, 146L, 147L, 148L, 148L, 149L, 150L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 156L, 157L, 158L, 158L, 159L, 160L, 160L, 161L, 162L, 162L, 163L, 164L, 164L, 165L, 166L, 166L, 167L, 168L, 168L, 169L, 170L, 170L, 171L, 172L, 172L, 173L, 174L, 174L, 175L, 176L, 176L, 177L, 178L, 178L, 179L, 180L, 180L, 181L, 182L, 182L, 183L, 184L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 190L, 190L, 191L, 192L, 192L, 193L, 194L, 194L, 195L, 196L, 196L, 197L, 198L, 198L, 199L, 200L, 200L, 201L, 202L, 202L, 203L, 204L, 204L, 205L, 206L, 206L, 207L, 208L, 208L, 209L, 210L, 210L, 211L, 212L, 212L, 213L, 214L, 214L, 215L, 216L, 216L, 217L, 218L, 218L, 219L, 220L, 220L, 221L, 222L, 222L, 223L, 224L, 224L, 225L, 226L, 226L, 227L, 228L, 228L, 229L, 230L, 230L, 231L ), p = c(0L, 1L, 3L, 4L, 6L, 7L, 9L, 10L, 12L, 13L, 15L, 16L, 18L, 19L, 21L, 22L, 24L, 25L, 27L, 28L, 30L, 31L, 33L, 34L, 36L, 37L, 39L, 40L, 42L, 43L, 45L, 46L, 48L, 49L, 51L, 52L, 54L, 55L, 57L, 58L, 60L, 61L, 63L, 64L, 66L, 67L, 69L, 70L, 72L, 73L, 75L, 76L, 78L, 79L, 81L, 82L, 84L, 85L, 87L, 88L, 90L, 91L, 93L, 94L, 96L, 97L, 99L, 100L, 102L, 103L, 105L, 106L, 108L, 109L, 111L, 112L, 114L, 115L, 117L, 118L, 120L, 121L, 123L, 124L, 126L, 127L, 129L, 130L, 132L, 133L, 135L, 136L, 138L, 139L, 141L, 142L, 144L, 145L, 147L, 148L, 150L, 151L, 153L, 154L, 156L, 157L, 159L, 160L, 162L, 163L, 165L, 166L, 168L, 169L, 171L, 172L, 174L, 175L, 177L, 178L, 180L, 181L, 183L, 184L, 186L, 187L, 189L, 190L, 192L, 193L, 195L, 196L, 198L, 199L, 201L, 202L, 204L, 205L, 207L, 208L, 210L, 211L, 213L, 214L, 216L, 217L, 219L, 220L, 222L, 223L, 225L, 226L, 228L, 229L, 231L, 232L, 234L, 235L, 237L, 238L, 240L, 241L, 243L, 244L, 246L, 247L, 249L, 250L, 252L, 253L, 255L, 256L, 258L, 259L, 261L, 262L, 264L, 265L, 267L, 268L, 270L, 271L, 273L, 274L, 276L, 277L, 279L, 280L, 282L, 283L, 285L, 286L, 288L, 289L, 291L, 292L, 294L, 295L, 297L, 298L, 300L, 301L, 303L, 304L, 306L, 307L, 309L, 310L, 312L, 313L, 315L, 316L, 318L, 319L, 321L, 322L, 324L, 325L, 327L, 328L, 330L, 331L, 333L, 334L, 336L, 337L, 339L, 340L, 342L, 343L, 345L, 346L, 348L), Dim = c(232L, 232L), Dimnames = list(NULL, NULL), x = c(1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1), factors = list()), flist = list( id = c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 4L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 7L, 7L, 7L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 10L, 10L, 10L, 11L, 11L, 11L, 11L, 12L, 12L, 12L, 12L, 13L, 13L, 13L, 13L, 14L, 14L, 14L, 14L, 14L, 15L, 15L, 15L, 15L, 15L, 16L, 16L, 16L, 16L, 16L, 17L, 17L, 18L, 18L, 18L, 19L, 20L, 20L, 21L, 21L, 21L, 21L, 21L, 22L, 22L, 23L, 24L, 24L, 24L, 24L, 25L, 25L, 25L, 25L, 25L, 26L, 26L, 26L, 26L, 26L, 27L, 27L, 28L, 28L, 28L, 29L, 29L, 29L, 29L, 29L, 30L, 30L, 30L, 30L, 31L, 31L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 35L, 35L, 35L, 36L, 37L, 38L, 39L, 40L, 40L, 40L, 40L, 40L, 41L, 42L, 42L, 42L, 42L, 42L, 43L, 43L, 43L, 43L, 44L, 44L, 44L, 44L, 45L, 45L, 45L, 46L, 46L, 47L, 47L, 47L, 47L, 48L, 48L, 48L, 48L, 49L, 49L, 49L, 50L, 50L, 50L, 50L, 50L, 51L, 52L, 52L, 52L, 52L, 53L, 54L, 55L, 55L, 55L, 55L, 56L, 57L, 58L, 58L, 59L, 59L, 59L, 60L, 61L, 62L, 63L, 63L, 63L, 63L, 63L, 64L, 64L, 64L, 64L, 64L, 65L, 65L, 66L, 67L, 67L, 68L, 68L, 68L, 68L, 68L, 69L, 69L, 70L, 70L, 70L, 70L, 70L, 71L, 71L, 72L, 72L, 72L, 72L, 73L, 74L, 75L, 76L, 76L, 76L, 77L, 77L, 78L, 78L, 79L, 80L, 81L, 82L, 82L, 82L, 82L, 82L, 83L, 84L, 85L, 85L, 85L, 86L, 86L, 86L, 87L, 87L, 87L, 87L, 87L, 88L, 88L, 88L, 88L, 88L, 89L, 90L, 91L, 91L, 91L, 91L, 91L, 92L, 93L, 93L, 93L, 93L, 93L, 94L, 94L, 95L, 95L, 95L, 96L, 96L, 96L, 96L, 96L, 97L, 97L, 97L, 97L, 97L, 98L, 99L, 99L, 99L, 100L, 100L, 100L, 100L, 101L, 101L, 101L, 101L, 102L, 103L, 103L, 103L, 104L, 104L, 104L, 104L, 105L, 106L, 106L, 106L, 106L, 107L, 107L, 108L, 109L, 109L, 110L, 110L, 110L, 111L, 111L, 111L, 112L, 112L, 112L, 113L, 113L, 113L, 114L, 114L, 115L, 116L)), cnms = list( id = c("(Intercept)", "month")), Ztlist = list(`1 + month | id` = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129" ), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list())), nl = c(id = 116L)), REML = TRUE, wmsgs = character(0), start = NULL, verbose = 0L, control = list(optimizer = "nloptwrap", restart_edge = TRUE, boundary.tol = 1e-05, calc.derivs = TRUE, use.last.params = FALSE, checkControl = list(check.nobs.vs.rankZ = "ignore", check.nobs.vs.nlev = "stop", check.nlev.gtreq.5 = "ignore", check.nlev.gtr.1 = "stop", check.nobs.vs.nRE = "stop", check.rankX = "message+drop.cols", check.scaleX = "warning", check.formula.LHS = "stop"), checkConv = list(check.conv.grad = list(action = "warning", tol = 0.002, relTol = NULL), check.conv.singular = list( action = "message", tol = 1e-04), check.conv.hess = list( action = "warning", tol = 1e-06)), optCtrl = list())) 10: do.call(mkLmerDevfun, c(lmod, list(start = start, verbose = verbose, control = control))) 11: lmer(renalfn ~ group + month + (1 + month | id), dialysis) An irrecoverable exception occurred. R is aborting now ... * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ...sh: line 1: 3535768 Segmentation fault (core dumped) '/home/th798/R/R-release/bin/R' --vanilla --no-echo > '/tmp/th798/16190373/R-release/1351/slim.Rcheck/build_vignettes.log' 2>&1 < '/tmp/th798/16190373/RtmphamfQo/file35e6537153df69' ERROR Error(s) in re-building vignettes: --- re-building 'slim.Rmd' using rmarkdown *** caught segfault *** address (nil), cause 'unknown' Traceback: 1: .Call(merPredDCreate, as(X, "matrix"), Lambdat, LamtUt, Lind, RZX, Ut, Utr, V, VtV, Vtr, Xwts, Zt, beta0, delb, delu, theta, u0) 2: initializePtr() 3: .Object$initialize(...) 4: initialize(value, ...) 5: initialize(value, ...) 6: methods::new(def, ...) 7: (new("refMethodDef", .Data = function (...) { methods::new(def, ...)}, mayCall = c("methods", "new"), name = "new", refClassName = "refGeneratorSlot", superClassMethod = ""))(Zt = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list()), theta = c(1, 0, 1), Lambdat = new("dgCMatrix", i = c(0L, 0L, 1L, 2L, 2L, 3L, 4L, 4L, 5L, 6L, 6L, 7L, 8L, 8L, 9L, 10L, 10L, 11L, 12L, 12L, 13L, 14L, 14L, 15L, 16L, 16L, 17L, 18L, 18L, 19L, 20L, 20L, 21L, 22L, 22L, 23L, 24L, 24L, 25L, 26L, 26L, 27L, 28L, 28L, 29L, 30L, 30L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 36L, 36L, 37L, 38L, 38L, 39L, 40L, 40L, 41L, 42L, 42L, 43L, 44L, 44L, 45L, 46L, 46L, 47L, 48L, 48L, 49L, 50L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 56L, 56L, 57L, 58L, 58L, 59L, 60L, 60L, 61L, 62L, 62L, 63L, 64L, 64L, 65L, 66L, 66L, 67L, 68L, 68L, 69L, 70L, 70L, 71L, 72L, 72L, 73L, 74L, 74L, 75L, 76L, 76L, 77L, 78L, 78L, 79L, 80L, 80L, 81L, 82L, 82L, 83L, 84L, 84L, 85L, 86L, 86L, 87L, 88L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 94L, 94L, 95L, 96L, 96L, 97L, 98L, 98L, 99L, 100L, 100L, 101L, 102L, 102L, 103L, 104L, 104L, 105L, 106L, 106L, 107L, 108L, 108L, 109L, 110L, 110L, 111L, 112L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 118L, 118L, 119L, 120L, 120L, 121L, 122L, 122L, 123L, 124L, 124L, 125L, 126L, 126L, 127L, 128L, 128L, 129L, 130L, 130L, 131L, 132L, 132L, 133L, 134L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 140L, 140L, 141L, 142L, 142L, 143L, 144L, 144L, 145L, 146L, 146L, 147L, 148L, 148L, 149L, 150L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 156L, 157L, 158L, 158L, 159L, 160L, 160L, 161L, 162L, 162L, 163L, 164L, 164L, 165L, 166L, 166L, 167L, 168L, 168L, 169L, 170L, 170L, 171L, 172L, 172L, 173L, 174L, 174L, 175L, 176L, 176L, 177L, 178L, 178L, 179L, 180L, 180L, 181L, 182L, 182L, 183L, 184L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 190L, 190L, 191L, 192L, 192L, 193L, 194L, 194L, 195L, 196L, 196L, 197L, 198L, 198L, 199L, 200L, 200L, 201L, 202L, 202L, 203L, 204L, 204L, 205L, 206L, 206L, 207L, 208L, 208L, 209L, 210L, 210L, 211L, 212L, 212L, 213L, 214L, 214L, 215L, 216L, 216L, 217L, 218L, 218L, 219L, 220L, 220L, 221L, 222L, 222L, 223L, 224L, 224L, 225L, 226L, 226L, 227L, 228L, 228L, 229L, 230L, 230L, 231L), p = c(0L, 1L, 3L, 4L, 6L, 7L, 9L, 10L, 12L, 13L, 15L, 16L, 18L, 19L, 21L, 22L, 24L, 25L, 27L, 28L, 30L, 31L, 33L, 34L, 36L, 37L, 39L, 40L, 42L, 43L, 45L, 46L, 48L, 49L, 51L, 52L, 54L, 55L, 57L, 58L, 60L, 61L, 63L, 64L, 66L, 67L, 69L, 70L, 72L, 73L, 75L, 76L, 78L, 79L, 81L, 82L, 84L, 85L, 87L, 88L, 90L, 91L, 93L, 94L, 96L, 97L, 99L, 100L, 102L, 103L, 105L, 106L, 108L, 109L, 111L, 112L, 114L, 115L, 117L, 118L, 120L, 121L, 123L, 124L, 126L, 127L, 129L, 130L, 132L, 133L, 135L, 136L, 138L, 139L, 141L, 142L, 144L, 145L, 147L, 148L, 150L, 151L, 153L, 154L, 156L, 157L, 159L, 160L, 162L, 163L, 165L, 166L, 168L, 169L, 171L, 172L, 174L, 175L, 177L, 178L, 180L, 181L, 183L, 184L, 186L, 187L, 189L, 190L, 192L, 193L, 195L, 196L, 198L, 199L, 201L, 202L, 204L, 205L, 207L, 208L, 210L, 211L, 213L, 214L, 216L, 217L, 219L, 220L, 222L, 223L, 225L, 226L, 228L, 229L, 231L, 232L, 234L, 235L, 237L, 238L, 240L, 241L, 243L, 244L, 246L, 247L, 249L, 250L, 252L, 253L, 255L, 256L, 258L, 259L, 261L, 262L, 264L, 265L, 267L, 268L, 270L, 271L, 273L, 274L, 276L, 277L, 279L, 280L, 282L, 283L, 285L, 286L, 288L, 289L, 291L, 292L, 294L, 295L, 297L, 298L, 300L, 301L, 303L, 304L, 306L, 307L, 309L, 310L, 312L, 313L, 315L, 316L, 318L, 319L, 321L, 322L, 324L, 325L, 327L, 328L, 330L, 331L, 333L, 334L, 336L, 337L, 339L, 340L, 342L, 343L, 345L, 346L, 348L), Dim = c(232L, 232L), Dimnames = list(NULL, NULL), x = c(1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1), factors = list()), Lind = c(1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L), n = 325L, X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 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1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 3, 12, 18, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 3, 0, 0, 3, 0, 3, 6, 12, 0, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 12, 18, 0, 3, 12, 18, 0, 3, 6, 0, 3, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 0, 0, 3, 6, 12, 3, 3, 0, 3, 0, 3, 6, 0, 0, 0, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 18, 0, 0, 0, 0, 3, 6, 0, 3, 0, 3, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 3, 6, 0, 3, 6, 12, 0, 3, 6, 12, 0, 0, 3, 6, 0, 3, 6, 12, 0, 0, 3, 6, 12, 0, 3, 0, 0, 3, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 0, 0)) 8: do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")], n = nrow(X), list(X = X))) 9: (function (fr, X, reTrms, REML = TRUE, start = NULL, verbose = 0, control = lmerControl(), ...) { p <- ncol(X) rho <- new.env(parent = parent.env(environment())) rho$pp <- do.call(merPredD$new, c(reTrms[c("Zt", "theta", "Lambdat", "Lind")], n = nrow(X), list(X = X))) REMLpass <- if (REML) p else 0L rho$resp <- if (missing(fr)) mkRespMod(REML = REMLpass, ...) else mkRespMod(fr, REML = REMLpass) pp <- resp <- NULL rho$lmer_Deviance <- lmer_Deviance devfun <- function(theta) .Call(lmer_Deviance, pp$ptr(), resp$ptr(), as.double(theta)) environment(devfun) <- rho if (is.null(start) && all(reTrms$cnms == "(Intercept)") && length(reTrms$flist) == length(reTrms$lower) && !is.null(y <- model.response(fr))) { v <- sapply(reTrms$flist, function(f) var(ave(y, f))) v.e <- var(y) - sum(v) if (!is.na(v.e) && v.e > 0) { v.rel <- v/v.e if (all(v.rel >= reTrms$lower^2)) rho$pp$setTheta(sqrt(v.rel)) } } if (length(rho$resp$y) > 0) devfun(rho$pp$theta) rho$lower <- reTrms$lower devfun})(fr = list(renalfn = c(42.18586736, 49.51905287, 47.23348216, 39.73473231, 36.11415764, 37.42491267, 34.14163819, 26.04327878, 24.67424289, 19.81487005, 39.99183037, 15.65113698, 15.48588288, 21.99695355, 11.3932057, 9.53588487, 82.59920741, 76.91727194, 52.15558995, 65.1389285, 64.86346035, 39.95179609, 50.56206801, 28.30843237, 67.94587424, 77.4292773, 70.11531132, 66.52304926, 48.2394396, 5.451607605, 37.85757758, 45.14566278, 55.03341481, 55.37375416, 20.08144629, 23.9564735, 43.65902828, 43.37620076, 76.07346611, 62.00927319, 59.8989675, 40.08999968, 11.52689472, 20.11132827, 12.04998646, 18.11615025, 22.48976842, 37.86674412, 35.04611475, 28.59263822, 29.60880223, 49.96550183, 109.6231391, 56.66910092, 64.98448652, 57.27517688, 46.33897512, 34.24697034, 41.92067549, 34.75033195, 39.15380885, 6.80382564, 7.126706478, 46.75492217, 35.71149416, 33.13179689, 16.75454258, 11.48277344, 7.602473566, 21.44283134, 31.20087371, 36.98183744, 32.08173043, 34.96172372, 45.646201, 31.20137394, 0, 44.12534421, 32.76834655, 14.21453479, 0.105882491, 121.1754616, 117.5662607, 107.8338149, 139.1936234, 161.1990381, 53.65867982, 50.445678, 40.21797399, 40.59197363, 29.82666119, 36.03903868, 49.32301287, 0, 32.78791896, 21.62658234, 81.93357367, 107.5331678, 88.99389531, 72.31236096, 78.8435282, 85.04757041, 96.05567924, 67.36928107, 63.30875145, 45.18526414, 49.97540112, 36.76018406, 17.22466287, 17.33912102, 22.88105614, 89.54931054, 71.32771471, 10.61373458, 8.980027998, 7.019226351, 14.90427613, 51.79107016, 36.66299993, 44.42162233, 64.785, 89.74029077, 103.5283486, 104.4809636, 104.2746661, 105.4548067, 4.752889076, 132.2200424, 130.5470949, 116.8913188, 122.9002204, 80.75552035, 90.01184419, 91.44121597, 41.44378497, 47.94628411, 35.92233011, 29.61028881, 29.22080933, 26.21917337, 79.29260265, 140.7594971, 162.3960003, 35.1063268, 41.57645048, 34.24511205, 42.93623889, 52.42116017, 41.30087377, 89.15021371, 98.37062942, 97.24443456, 97.03840614, 106.2888672, 50.43584664, 68.0202125, 57.91159996, 51.76743074, 48.89565809, 33.34139612, 37.8873247, 0, 20.39777981, 20.70007244, 18.72075848, 14.76569952, 25.3532322, 39.22864856, 55.70579676, 39.94673395, 30.30189548, 26.31403197, 56.34815427, 0, 70.59392222, 31.86926319, 57.9309353, 98.21300621, 67.75250488, 4.74270391, 36.3687668, 36.29711213, 58.06070692, 83.05237431, 49.94386008, 78.83290828, 39.508697, 170.451781, 126.9514582, 152.0566652, 152.1644605, 106.0276161, 173.6986959, 287.2259033, 23.54035009, 44.60228944, 62.9768039, 39.74592189, 43.20937801, 35.98214312, 37.94726246, 38.97228691, 32.61803919, 52.49709881, 86.81892455, 75.18996084, 79.32729108, 76.40091499, 79.78470686, 12.0648936, 62.43477526, 73.31848193, 84.93916761, 75.59363999, 68.98294078, 90.40278291, 69.27276322, 38.33966042, 61.42101889, 36.8495074, 34.02620575, 67.75355192, 37.23641805, 29.43142346, 20.58376442, 27.72963035, 67.7571676, 39.68790341, 45.38935223, 53.18127087, 58.29921463, 40.88828569, 37.66537074, 56.04089768, 67.23438482, 95.74566306, 49.86866944, 45.84850798, 62.5067336, 59.94353034, 35.21367645, 46.81395026, 50.76742077, 44.02251342, 22.10353743, 25.11771761, 22.07181064, 42.48465985, 44.10234143, 25.94843318, 34.90916012, 14.08103309, 0.717020975, 76.45412278, 132.0241123, 101.4420685, 137.9372656, 141.4358769, 2.920897871, 17.35968778, 17.81253744, 9.590774804, 11.33943063, 48.48501476, 149.1301773, 81.14977925, 4.024634044, 4.845326384, 3.107417387, 56.55817988, 75.2695585, 54.87439127, 43.77320862, 33.58018314, 38.87148161, 42.57149814, 42.42230765, 37.53067522, 39.54480329, 47.9187051, 18.53460448, 14.77267792, 3.408872053, 75.17043351, 57.34094281, 43.89236486, 32.30668695, 51.03843718, 67.47048966, 62.56180559, 59.39539491, 48.5918411, 31.88905394, 23.19461554, 24.10428089, 98.30308598, 36.79821674, 45.23857973, 45.97087187, 61.6429385, 48.09861852, 55.95834257, 47.09101177, 44.63652643, 142.5124369, 89.03559242, 119.1255967, 23.09052106, 19.15149903, 78.20568201, 109.4382897, 88.74972644, 74.65859827, 110.404936, 92.35788667, 35.72311463, 26.18382875, 15.42929546, 91.68492361, 97.18725627, 101.038436, 46.31561871, 23.51898599, 115.4252479, 130.2801053), group = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 2L, 3L, 1L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 1L, 1L, 1L, 1L, 3L, 3L, 3L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 3L, 2L, 2L, 2L, 2L, 3L, 2L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 3L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 2L, 3L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 1L, 1L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 2L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 2L, 3L, 2L), month = c(3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 12L, 18L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 3L, 6L, 12L, 0L, 0L, 3L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 0L, 3L, 0L, 0L, 3L, 0L, 3L, 6L, 12L, 0L, 0L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 12L, 18L, 0L, 3L, 12L, 18L, 0L, 3L, 6L, 0L, 3L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 0L, 0L, 0L, 3L, 6L, 12L, 3L, 3L, 0L, 3L, 0L, 3L, 6L, 0L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 0L, 3L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 3L, 6L, 12L, 18L, 0L, 0L, 0L, 0L, 3L, 6L, 0L, 3L, 0L, 3L, 0L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 18L, 0L, 3L, 6L, 12L, 18L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 0L, 3L, 6L, 12L, 0L, 0L, 3L, 6L, 0L, 3L, 6L, 12L, 0L, 0L, 3L, 6L, 12L, 0L, 3L, 0L, 0L, 3L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 6L, 0L, 3L, 0L, 0L), id = c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 4L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 7L, 7L, 7L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 10L, 10L, 10L, 11L, 11L, 11L, 11L, 12L, 12L, 12L, 12L, 13L, 13L, 13L, 13L, 14L, 14L, 14L, 14L, 14L, 15L, 15L, 15L, 15L, 15L, 16L, 16L, 16L, 16L, 16L, 17L, 17L, 18L, 18L, 18L, 19L, 20L, 20L, 21L, 21L, 21L, 21L, 21L, 22L, 22L, 23L, 24L, 24L, 24L, 24L, 25L, 25L, 25L, 25L, 25L, 26L, 26L, 26L, 26L, 26L, 27L, 27L, 28L, 28L, 28L, 29L, 29L, 29L, 29L, 29L, 30L, 30L, 30L, 30L, 31L, 31L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 35L, 35L, 35L, 36L, 37L, 38L, 39L, 40L, 40L, 40L, 40L, 40L, 41L, 42L, 42L, 42L, 42L, 42L, 43L, 43L, 43L, 43L, 44L, 44L, 44L, 44L, 45L, 45L, 45L, 46L, 46L, 47L, 47L, 47L, 47L, 48L, 48L, 48L, 48L, 49L, 49L, 49L, 50L, 50L, 50L, 50L, 50L, 51L, 52L, 52L, 52L, 52L, 53L, 54L, 55L, 55L, 55L, 55L, 56L, 57L, 58L, 58L, 59L, 59L, 59L, 60L, 61L, 62L, 63L, 63L, 63L, 63L, 63L, 64L, 64L, 64L, 64L, 64L, 65L, 65L, 66L, 67L, 67L, 68L, 68L, 68L, 68L, 68L, 69L, 69L, 70L, 70L, 70L, 70L, 70L, 71L, 71L, 72L, 72L, 72L, 72L, 73L, 74L, 75L, 76L, 76L, 76L, 77L, 77L, 78L, 78L, 79L, 80L, 81L, 82L, 82L, 82L, 82L, 82L, 83L, 84L, 85L, 85L, 85L, 86L, 86L, 86L, 87L, 87L, 87L, 87L, 87L, 88L, 88L, 88L, 88L, 88L, 89L, 90L, 91L, 91L, 91L, 91L, 91L, 92L, 93L, 93L, 93L, 93L, 93L, 94L, 94L, 95L, 95L, 95L, 96L, 96L, 96L, 96L, 96L, 97L, 97L, 97L, 97L, 97L, 98L, 99L, 99L, 99L, 100L, 100L, 100L, 100L, 101L, 101L, 101L, 101L, 102L, 103L, 103L, 103L, 104L, 104L, 104L, 104L, 105L, 106L, 106L, 106L, 106L, 107L, 107L, 108L, 109L, 109L, 110L, 110L, 110L, 111L, 111L, 111L, 112L, 112L, 112L, 113L, 113L, 113L, 114L, 114L, 115L, 116L )), X = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 3, 12, 18, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 6, 12, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 0, 3, 6, 0, 3, 0, 0, 3, 0, 3, 6, 12, 0, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 12, 18, 0, 3, 12, 18, 0, 3, 6, 0, 3, 0, 3, 6, 12, 0, 3, 6, 12, 0, 3, 6, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 0, 0, 0, 3, 6, 12, 3, 3, 0, 3, 0, 3, 6, 0, 0, 0, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 3, 0, 0, 3, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 12, 18, 0, 3, 3, 6, 12, 18, 0, 0, 0, 0, 3, 6, 0, 3, 0, 3, 0, 0, 0, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 0, 3, 6, 12, 18, 0, 0, 3, 6, 12, 18, 0, 3, 0, 3, 6, 0, 3, 6, 12, 18, 0, 3, 6, 12, 18, 0, 0, 3, 6, 0, 3, 6, 12, 0, 3, 6, 12, 0, 0, 3, 6, 0, 3, 6, 12, 0, 0, 3, 6, 12, 0, 3, 0, 0, 3, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 6, 0, 3, 0, 0), reTrms = list(Zt = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L ), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129"), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list()), theta = c(1, 0, 1), Lind = c(1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L, 1L, 2L, 3L), Gp = c(0L, 232L ), lower = c(0, -Inf, 0), Lambdat = new("dgCMatrix", i = c(0L, 0L, 1L, 2L, 2L, 3L, 4L, 4L, 5L, 6L, 6L, 7L, 8L, 8L, 9L, 10L, 10L, 11L, 12L, 12L, 13L, 14L, 14L, 15L, 16L, 16L, 17L, 18L, 18L, 19L, 20L, 20L, 21L, 22L, 22L, 23L, 24L, 24L, 25L, 26L, 26L, 27L, 28L, 28L, 29L, 30L, 30L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 36L, 36L, 37L, 38L, 38L, 39L, 40L, 40L, 41L, 42L, 42L, 43L, 44L, 44L, 45L, 46L, 46L, 47L, 48L, 48L, 49L, 50L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 56L, 56L, 57L, 58L, 58L, 59L, 60L, 60L, 61L, 62L, 62L, 63L, 64L, 64L, 65L, 66L, 66L, 67L, 68L, 68L, 69L, 70L, 70L, 71L, 72L, 72L, 73L, 74L, 74L, 75L, 76L, 76L, 77L, 78L, 78L, 79L, 80L, 80L, 81L, 82L, 82L, 83L, 84L, 84L, 85L, 86L, 86L, 87L, 88L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 94L, 94L, 95L, 96L, 96L, 97L, 98L, 98L, 99L, 100L, 100L, 101L, 102L, 102L, 103L, 104L, 104L, 105L, 106L, 106L, 107L, 108L, 108L, 109L, 110L, 110L, 111L, 112L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 118L, 118L, 119L, 120L, 120L, 121L, 122L, 122L, 123L, 124L, 124L, 125L, 126L, 126L, 127L, 128L, 128L, 129L, 130L, 130L, 131L, 132L, 132L, 133L, 134L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 140L, 140L, 141L, 142L, 142L, 143L, 144L, 144L, 145L, 146L, 146L, 147L, 148L, 148L, 149L, 150L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 156L, 157L, 158L, 158L, 159L, 160L, 160L, 161L, 162L, 162L, 163L, 164L, 164L, 165L, 166L, 166L, 167L, 168L, 168L, 169L, 170L, 170L, 171L, 172L, 172L, 173L, 174L, 174L, 175L, 176L, 176L, 177L, 178L, 178L, 179L, 180L, 180L, 181L, 182L, 182L, 183L, 184L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 190L, 190L, 191L, 192L, 192L, 193L, 194L, 194L, 195L, 196L, 196L, 197L, 198L, 198L, 199L, 200L, 200L, 201L, 202L, 202L, 203L, 204L, 204L, 205L, 206L, 206L, 207L, 208L, 208L, 209L, 210L, 210L, 211L, 212L, 212L, 213L, 214L, 214L, 215L, 216L, 216L, 217L, 218L, 218L, 219L, 220L, 220L, 221L, 222L, 222L, 223L, 224L, 224L, 225L, 226L, 226L, 227L, 228L, 228L, 229L, 230L, 230L, 231L ), p = c(0L, 1L, 3L, 4L, 6L, 7L, 9L, 10L, 12L, 13L, 15L, 16L, 18L, 19L, 21L, 22L, 24L, 25L, 27L, 28L, 30L, 31L, 33L, 34L, 36L, 37L, 39L, 40L, 42L, 43L, 45L, 46L, 48L, 49L, 51L, 52L, 54L, 55L, 57L, 58L, 60L, 61L, 63L, 64L, 66L, 67L, 69L, 70L, 72L, 73L, 75L, 76L, 78L, 79L, 81L, 82L, 84L, 85L, 87L, 88L, 90L, 91L, 93L, 94L, 96L, 97L, 99L, 100L, 102L, 103L, 105L, 106L, 108L, 109L, 111L, 112L, 114L, 115L, 117L, 118L, 120L, 121L, 123L, 124L, 126L, 127L, 129L, 130L, 132L, 133L, 135L, 136L, 138L, 139L, 141L, 142L, 144L, 145L, 147L, 148L, 150L, 151L, 153L, 154L, 156L, 157L, 159L, 160L, 162L, 163L, 165L, 166L, 168L, 169L, 171L, 172L, 174L, 175L, 177L, 178L, 180L, 181L, 183L, 184L, 186L, 187L, 189L, 190L, 192L, 193L, 195L, 196L, 198L, 199L, 201L, 202L, 204L, 205L, 207L, 208L, 210L, 211L, 213L, 214L, 216L, 217L, 219L, 220L, 222L, 223L, 225L, 226L, 228L, 229L, 231L, 232L, 234L, 235L, 237L, 238L, 240L, 241L, 243L, 244L, 246L, 247L, 249L, 250L, 252L, 253L, 255L, 256L, 258L, 259L, 261L, 262L, 264L, 265L, 267L, 268L, 270L, 271L, 273L, 274L, 276L, 277L, 279L, 280L, 282L, 283L, 285L, 286L, 288L, 289L, 291L, 292L, 294L, 295L, 297L, 298L, 300L, 301L, 303L, 304L, 306L, 307L, 309L, 310L, 312L, 313L, 315L, 316L, 318L, 319L, 321L, 322L, 324L, 325L, 327L, 328L, 330L, 331L, 333L, 334L, 336L, 337L, 339L, 340L, 342L, 343L, 345L, 346L, 348L), Dim = c(232L, 232L), Dimnames = list(NULL, NULL), x = c(1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1, 1, 0, 1), factors = list()), flist = list( id = c(1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 4L, 5L, 5L, 5L, 5L, 6L, 6L, 6L, 6L, 6L, 7L, 7L, 7L, 8L, 8L, 8L, 8L, 8L, 9L, 10L, 10L, 10L, 10L, 11L, 11L, 11L, 11L, 12L, 12L, 12L, 12L, 13L, 13L, 13L, 13L, 14L, 14L, 14L, 14L, 14L, 15L, 15L, 15L, 15L, 15L, 16L, 16L, 16L, 16L, 16L, 17L, 17L, 18L, 18L, 18L, 19L, 20L, 20L, 21L, 21L, 21L, 21L, 21L, 22L, 22L, 23L, 24L, 24L, 24L, 24L, 25L, 25L, 25L, 25L, 25L, 26L, 26L, 26L, 26L, 26L, 27L, 27L, 28L, 28L, 28L, 29L, 29L, 29L, 29L, 29L, 30L, 30L, 30L, 30L, 31L, 31L, 31L, 32L, 32L, 33L, 34L, 34L, 35L, 35L, 35L, 35L, 36L, 37L, 38L, 39L, 40L, 40L, 40L, 40L, 40L, 41L, 42L, 42L, 42L, 42L, 42L, 43L, 43L, 43L, 43L, 44L, 44L, 44L, 44L, 45L, 45L, 45L, 46L, 46L, 47L, 47L, 47L, 47L, 48L, 48L, 48L, 48L, 49L, 49L, 49L, 50L, 50L, 50L, 50L, 50L, 51L, 52L, 52L, 52L, 52L, 53L, 54L, 55L, 55L, 55L, 55L, 56L, 57L, 58L, 58L, 59L, 59L, 59L, 60L, 61L, 62L, 63L, 63L, 63L, 63L, 63L, 64L, 64L, 64L, 64L, 64L, 65L, 65L, 66L, 67L, 67L, 68L, 68L, 68L, 68L, 68L, 69L, 69L, 70L, 70L, 70L, 70L, 70L, 71L, 71L, 72L, 72L, 72L, 72L, 73L, 74L, 75L, 76L, 76L, 76L, 77L, 77L, 78L, 78L, 79L, 80L, 81L, 82L, 82L, 82L, 82L, 82L, 83L, 84L, 85L, 85L, 85L, 86L, 86L, 86L, 87L, 87L, 87L, 87L, 87L, 88L, 88L, 88L, 88L, 88L, 89L, 90L, 91L, 91L, 91L, 91L, 91L, 92L, 93L, 93L, 93L, 93L, 93L, 94L, 94L, 95L, 95L, 95L, 96L, 96L, 96L, 96L, 96L, 97L, 97L, 97L, 97L, 97L, 98L, 99L, 99L, 99L, 100L, 100L, 100L, 100L, 101L, 101L, 101L, 101L, 102L, 103L, 103L, 103L, 104L, 104L, 104L, 104L, 105L, 106L, 106L, 106L, 106L, 107L, 107L, 108L, 109L, 109L, 110L, 110L, 110L, 111L, 111L, 111L, 112L, 112L, 112L, 113L, 113L, 113L, 114L, 114L, 115L, 116L)), cnms = list( id = c("(Intercept)", "month")), Ztlist = list(`1 + month | id` = new("dgCMatrix", i = c(0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 2L, 2L, 3L, 2L, 3L, 2L, 3L, 4L, 4L, 5L, 4L, 5L, 6L, 8L, 8L, 9L, 8L, 9L, 8L, 9L, 10L, 10L, 11L, 10L, 11L, 10L, 11L, 10L, 11L, 12L, 12L, 13L, 12L, 13L, 14L, 14L, 15L, 14L, 15L, 14L, 15L, 14L, 15L, 16L, 18L, 18L, 19L, 18L, 19L, 18L, 19L, 20L, 20L, 21L, 20L, 21L, 20L, 21L, 22L, 22L, 23L, 22L, 23L, 22L, 23L, 24L, 24L, 25L, 24L, 25L, 24L, 25L, 26L, 26L, 27L, 26L, 27L, 26L, 27L, 26L, 27L, 28L, 28L, 29L, 28L, 29L, 28L, 29L, 28L, 29L, 30L, 30L, 31L, 30L, 31L, 30L, 31L, 30L, 31L, 32L, 32L, 33L, 34L, 35L, 34L, 35L, 34L, 35L, 36L, 38L, 38L, 39L, 40L, 40L, 41L, 40L, 41L, 40L, 41L, 40L, 41L, 42L, 42L, 43L, 44L, 46L, 46L, 47L, 46L, 47L, 46L, 47L, 48L, 48L, 49L, 48L, 49L, 48L, 49L, 48L, 49L, 50L, 50L, 51L, 50L, 51L, 50L, 51L, 50L, 51L, 52L, 52L, 53L, 54L, 54L, 55L, 54L, 55L, 56L, 56L, 57L, 56L, 57L, 56L, 57L, 56L, 57L, 58L, 58L, 59L, 58L, 59L, 58L, 59L, 60L, 60L, 61L, 60L, 61L, 62L, 62L, 63L, 64L, 66L, 66L, 67L, 68L, 68L, 69L, 68L, 69L, 68L, 69L, 70L, 72L, 74L, 76L, 78L, 78L, 79L, 78L, 79L, 78L, 79L, 78L, 79L, 80L, 82L, 82L, 83L, 82L, 83L, 82L, 83L, 82L, 83L, 84L, 84L, 85L, 84L, 85L, 84L, 85L, 86L, 86L, 87L, 86L, 87L, 86L, 87L, 88L, 88L, 89L, 88L, 89L, 90L, 90L, 91L, 92L, 92L, 93L, 92L, 93L, 92L, 93L, 94L, 94L, 95L, 94L, 95L, 94L, 95L, 96L, 96L, 97L, 96L, 97L, 98L, 98L, 99L, 98L, 99L, 98L, 99L, 98L, 99L, 100L, 102L, 102L, 103L, 102L, 103L, 102L, 103L, 104L, 106L, 108L, 108L, 109L, 108L, 109L, 108L, 109L, 110L, 111L, 112L, 113L, 114L, 114L, 115L, 116L, 116L, 117L, 116L, 117L, 118L, 120L, 122L, 124L, 124L, 125L, 124L, 125L, 124L, 125L, 124L, 125L, 126L, 126L, 127L, 126L, 127L, 126L, 127L, 126L, 127L, 128L, 128L, 129L, 130L, 132L, 132L, 133L, 134L, 134L, 135L, 134L, 135L, 134L, 135L, 134L, 135L, 136L, 136L, 137L, 138L, 138L, 139L, 138L, 139L, 138L, 139L, 138L, 139L, 140L, 140L, 141L, 142L, 143L, 142L, 143L, 142L, 143L, 142L, 143L, 144L, 146L, 148L, 150L, 150L, 151L, 150L, 151L, 152L, 152L, 153L, 154L, 154L, 155L, 156L, 158L, 160L, 162L, 162L, 163L, 162L, 163L, 162L, 163L, 162L, 163L, 164L, 166L, 168L, 168L, 169L, 168L, 169L, 170L, 170L, 171L, 170L, 171L, 172L, 172L, 173L, 172L, 173L, 172L, 173L, 172L, 173L, 174L, 174L, 175L, 174L, 175L, 174L, 175L, 174L, 175L, 176L, 178L, 180L, 180L, 181L, 180L, 181L, 180L, 181L, 180L, 181L, 182L, 184L, 184L, 185L, 184L, 185L, 184L, 185L, 184L, 185L, 186L, 186L, 187L, 188L, 188L, 189L, 188L, 189L, 190L, 190L, 191L, 190L, 191L, 190L, 191L, 190L, 191L, 192L, 192L, 193L, 192L, 193L, 192L, 193L, 192L, 193L, 194L, 196L, 196L, 197L, 196L, 197L, 198L, 198L, 199L, 198L, 199L, 198L, 199L, 200L, 200L, 201L, 200L, 201L, 200L, 201L, 202L, 204L, 204L, 205L, 204L, 205L, 206L, 206L, 207L, 206L, 207L, 206L, 207L, 208L, 210L, 210L, 211L, 210L, 211L, 210L, 211L, 212L, 212L, 213L, 214L, 216L, 216L, 217L, 218L, 218L, 219L, 218L, 219L, 220L, 220L, 221L, 220L, 221L, 222L, 222L, 223L, 222L, 223L, 224L, 224L, 225L, 224L, 225L, 226L, 226L, 227L, 228L, 230L), p = c(0L, 2L, 4L, 6L, 8L, 9L, 11L, 13L, 15L, 16L, 18L, 20L, 21L, 22L, 24L, 26L, 28L, 29L, 31L, 33L, 35L, 37L, 38L, 40L, 42L, 43L, 45L, 47L, 49L, 51L, 52L, 53L, 55L, 57L, 59L, 60L, 62L, 64L, 66L, 67L, 69L, 71L, 73L, 74L, 76L, 78L, 80L, 81L, 83L, 85L, 87L, 89L, 90L, 92L, 94L, 96L, 98L, 99L, 101L, 103L, 105L, 107L, 108L, 110L, 112L, 114L, 116L, 117L, 118L, 120L, 121L, 123L, 125L, 127L, 129L, 130L, 132L, 133L, 134L, 136L, 138L, 140L, 141L, 143L, 145L, 147L, 149L, 150L, 152L, 154L, 156L, 158L, 159L, 161L, 162L, 164L, 166L, 167L, 169L, 171L, 173L, 175L, 176L, 178L, 180L, 182L, 183L, 185L, 187L, 188L, 190L, 191L, 192L, 194L, 195L, 197L, 199L, 201L, 202L, 203L, 204L, 205L, 206L, 208L, 210L, 212L, 214L, 215L, 216L, 218L, 220L, 222L, 224L, 225L, 227L, 229L, 231L, 232L, 234L, 236L, 238L, 239L, 241L, 243L, 244L, 246L, 247L, 249L, 251L, 253L, 254L, 256L, 258L, 260L, 261L, 263L, 265L, 266L, 268L, 270L, 272L, 274L, 275L, 276L, 278L, 280L, 282L, 283L, 284L, 285L, 287L, 289L, 291L, 293L, 295L, 296L, 298L, 299L, 301L, 303L, 304L, 305L, 306L, 307L, 309L, 311L, 313L, 315L, 316L, 318L, 320L, 322L, 324L, 325L, 327L, 328L, 329L, 331L, 332L, 334L, 336L, 338L, 340L, 341L, 343L, 344L, 346L, 348L, 350L, 352L, 353L, 355L, 357L, 359L, 361L, 363L, 364L, 365L, 366L, 367L, 369L, 371L, 372L, 374L, 375L, 377L, 378L, 379L, 380L, 381L, 383L, 385L, 387L, 389L, 390L, 391L, 392L, 394L, 396L, 397L, 399L, 401L, 402L, 404L, 406L, 408L, 410L, 411L, 413L, 415L, 417L, 419L, 420L, 421L, 422L, 424L, 426L, 428L, 430L, 431L, 432L, 434L, 436L, 438L, 440L, 441L, 443L, 444L, 446L, 448L, 449L, 451L, 453L, 455L, 457L, 458L, 460L, 462L, 464L, 466L, 467L, 468L, 470L, 472L, 473L, 475L, 477L, 479L, 480L, 482L, 484L, 486L, 487L, 488L, 490L, 492L, 493L, 495L, 497L, 499L, 500L, 501L, 503L, 505L, 507L, 508L, 510L, 511L, 512L, 514L, 515L, 517L, 519L, 520L, 522L, 524L, 525L, 527L, 529L, 530L, 532L, 534L, 535L, 537L, 538L, 539L), Dim = c(232L, 325L), Dimnames = list(c("G-01-001", "G-01-001", "G-01-002", "G-01-002", "G-01-003", "G-01-003", "G-01-004", "G-01-004", "G-01-005", "G-01-005", "G-01-006", "G-01-006", "G-01-007", "G-01-007", "G-01-008", "G-01-008", "G-01-009", "G-01-009", "G-01-010", "G-01-010", "G-01-011", "G-01-011", "G-01-012", "G-01-012", "G-01-013", "G-01-013", "G-01-014", "G-01-014", "G-01-015", "G-01-015", "G-01-016", "G-01-016", "G-01-017", "G-01-017", "G-01-018", "G-01-018", "G-01-019", "G-01-019", "G-01-020", "G-01-020", "G-01-021", "G-01-021", "G-01-022", "G-01-022", "G-01-023", "G-01-023", "G-01-024", "G-01-024", "G-01-025", "G-01-025", "G-01-026", "G-01-026", "G-01-027", "G-01-027", "G-01-028", "G-01-028", "G-01-029", "G-01-029", "G-01-030", "G-01-030", "G-01-031", "G-01-031", "G-01-032", "G-01-032", "G-01-034", "G-01-034", "G-01-035", "G-01-035", "G-01-036", "G-01-036", "G-01-037", "G-01-037", "G-01-038", "G-01-038", "G-01-040", "G-01-040", "G-01-042", "G-01-042", "G-01-043", "G-01-043", "G-01-044", "G-01-044", "G-01-045", "G-01-045", "G-01-046", "G-01-046", "G-01-047", "G-01-047", "G-01-049", "G-01-049", "G-01-050", "G-01-050", "G-01-051", "G-01-051", "G-01-053", "G-01-053", "G-01-054", "G-01-054", "G-01-055", "G-01-055", "G-01-056", "G-01-056", "G-01-057", "G-01-057", "G-01-058", "G-01-058", "G-01-059", "G-01-059", "G-01-060", "G-01-060", "G-01-061", "G-01-061", "G-01-062", "G-01-062", "G-01-063", "G-01-063", "G-01-064", "G-01-064", "G-01-065", "G-01-065", "G-01-066", "G-01-066", "G-01-067", "G-01-067", "G-01-069", "G-01-069", "G-01-070", "G-01-070", "G-01-071", "G-01-071", "G-01-072", "G-01-072", "G-01-073", "G-01-073", "G-01-074", "G-01-074", "G-01-075", "G-01-075", "G-01-076", "G-01-076", "G-01-077", "G-01-077", "G-01-078", "G-01-078", "G-01-079", "G-01-079", "G-01-080", "G-01-080", "G-01-082", "G-01-082", "G-01-084", "G-01-084", "G-01-085", "G-01-085", "G-01-086", "G-01-086", "G-01-088", "G-01-088", "G-01-089", "G-01-089", "G-01-091", "G-01-091", "G-01-092", "G-01-092", "G-01-093", "G-01-093", "G-01-094", "G-01-094", "G-01-096", "G-01-096", "G-01-097", "G-01-097", "G-01-098", "G-01-098", "G-01-099", "G-01-099", "G-01-100", "G-01-100", "G-01-101", "G-01-101", "G-01-102", "G-01-102", "G-01-103", "G-01-103", "G-01-104", "G-01-104", "G-01-105", "G-01-105", "G-01-106", "G-01-106", "G-01-107", "G-01-107", "G-01-108", "G-01-108", "G-01-109", "G-01-109", "G-01-110", "G-01-110", "G-01-111", "G-01-111", "G-01-112", "G-01-112", "G-01-113", "G-01-113", "G-01-114", "G-01-114", "G-01-115", "G-01-115", "G-01-116", "G-01-116", "G-01-117", "G-01-117", "G-01-118", "G-01-118", "G-01-119", "G-01-119", "G-01-120", "G-01-120", "G-01-121", "G-01-121", "G-01-122", "G-01-122", "G-01-124", "G-01-124", "G-01-125", "G-01-125", "G-01-127", "G-01-127", "G-01-128", "G-01-128", "G-01-129", "G-01-129" ), c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31", "32", "33", "34", "35", "36", "37", "38", "39", "40", "41", "42", "43", "44", "45", "46", "47", "48", "49", "50", "51", "52", "53", "54", "55", "56", "57", "58", "59", "60", "61", "62", "63", "64", "65", "66", "67", "68", "69", "70", "71", "72", "73", "74", "75", "76", "77", "78", "79", "80", "81", "82", "83", "84", "85", "86", "87", "88", "89", "90", "91", "92", "93", "94", "95", "96", "97", "98", "99", "100", "101", "102", "103", "104", "105", "106", "107", "108", "109", "110", "111", "112", "113", "114", "115", "116", "117", "118", "119", "120", "121", "122", "123", "124", "125", "126", "127", "128", "129", "130", "131", "132", "133", "134", "135", "136", "137", "138", "139", "140", "141", "142", "143", "144", "145", "146", "147", "148", "149", "150", "151", "152", "153", "154", "155", "156", "157", "158", "159", "160", "161", "162", "163", "164", "165", "166", "167", "168", "169", "170", "171", "172", "173", "174", "175", "176", "177", "178", "179", "180", "181", "182", "183", "184", "185", "186", "187", "188", "189", "190", "191", "192", "193", "194", "195", "196", "197", "198", "199", "200", "201", "202", "203", "204", "205", "206", "207", "208", "209", "210", "211", "212", "213", "214", "215", "216", "217", "218", "219", "220", "221", "222", "223", "224", "225", "226", "227", "228", "229", "230", "231", "232", "233", "234", "235", "236", "237", "238", "239", "240", "241", "242", "243", "244", "245", "246", "247", "248", "249", "250", "251", "252", "253", "254", "255", "256", "257", "258", "259", "260", "261", "262", "263", "264", "265", "266", "267", "268", "269", "270", "271", "272", "273", "274", "275", "276", "277", "278", "279", "280", "281", "282", "283", "284", "285", "286", "287", "288", "289", "290", "291", "292", "293", "294", "295", "296", "297", "298", "299", "300", "301", "302", "303", "304", "305", "306", "307", "308", "309", "310", "311", "312", "313", "314", "315", "316", "317", "318", "319", "320", "321", "322", "323", "324", "325")), x = c(1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 3, 1, 3, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1, 3, 1, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 3, 1, 6, 1, 12, 1, 18, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 12, 1, 1, 1, 3, 1, 6, 1, 12, 1, 1, 3, 1, 1, 1, 3, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 6, 1, 1, 3, 1, 1), factors = list())), nl = c(id = 116L)), REML = TRUE, wmsgs = character(0), start = NULL, verbose = 0L, control = list(optimizer = "nloptwrap", restart_edge = TRUE, boundary.tol = 1e-05, calc.derivs = TRUE, use.last.params = FALSE, checkControl = list(check.nobs.vs.rankZ = "ignore", check.nobs.vs.nlev = "stop", check.nlev.gtreq.5 = "ignore", check.nlev.gtr.1 = "stop", check.nobs.vs.nRE = "stop", check.rankX = "message+drop.cols", check.scaleX = "warning", check.formula.LHS = "stop"), checkConv = list(check.conv.grad = list(action = "warning", tol = 0.002, relTol = NULL), check.conv.singular = list( action = "message", tol = 1e-04), check.conv.hess = list( action = "warning", tol = 1e-06)), optCtrl = list())) 10: do.call(mkLmerDevfun, c(lmod, list(start = start, verbose = verbose, control = control))) 11: lmer(renalfn ~ group + month + (1 + month | id), dialysis) 12: eval(expr, envir, enclos) 13: eval(expr, envir, enclos) 14: eval_with_user_handlers(expr, envir, enclos, user_handlers) 15: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)) 16: withCallingHandlers(withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)), warning = wHandler, error = eHandler, message = mHandler) 17: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)), warning = wHandler, error = eHandler, message = mHandler)) 18: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)), warning = wHandler, error = eHandler, message = mHandler))) 19: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, log_echo = log_echo, log_warning = log_warning, output_handler = output_handler, include_timing = include_timing) 20: evaluate::evaluate(...) 21: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)) 22: in_dir(input_dir(), expr) 23: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))) 24: eng_r(options) 25: block_exec(params) 26: call_block(x) 27: process_group(group) 28: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)) 29: withCallingHandlers(expr, error = function(e) { loc = if (is.function(fun)) trimws(fun(label)) else "" if (loc != "") loc = sprintf(" at lines %s", loc) message(one_string(handler(e, loc)))}) 30: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)), function(e, loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from lines ", loc) }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) 31: process_file(text, output) 32: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 33: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) 34: vweave_rmarkdown(...) 35: engine$weave(file, quiet = quiet, encoding = enc) 36: doTryCatch(return(expr), name, parentenv, handler) 37: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 38: tryCatchList(expr, classes, parentenv, handlers) 39: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) 40: tools::buildVignettes(dir = "/tmp/th798/16190373/R-release/1351/slim.Rcheck/vign_test/slim", skip = TRUE, ser_elibs = "/tmp/th798/16190373/RtmphamfQo/file35e6533ca6695.rds") An irrecoverable exception occurred. R is aborting now ... * checking PDF version of manual ... OK * DONE Status: 2 ERRORs, 1 NOTE See '/tmp/th798/16190373/R-release/1351/slim.Rcheck/00check.log' for details. [1] "2025-03-30 01:12:55 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) --- R_version_4.4.3_2025-02-28/release_1.17.0.Rcheck/00check.log 2025-03-30 01:11:38.298831335 -0700 +++ R_version_4.4.3_2025-02-28/master_1.17.99.2cb03162a21328cc5f68a8c3b0e554f5edfcb5b9.Rcheck/00check.log 2025-03-30 01:12:55.324252419 -0700 @@ -162,7 +162,7 @@ 37: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 38: tryCatchList(expr, classes, parentenv, handlers) 39: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) -40: tools::buildVignettes(dir = "/tmp/th798/16190373/R-release/1351/slim.Rcheck/vign_test/slim", skip = TRUE, ser_elibs = "/tmp/th798/16190373/Rtmph883dv/file35aa5a14ab8871.rds") +40: tools::buildVignettes(dir = "/tmp/th798/16190373/R-release/1351/slim.Rcheck/vign_test/slim", skip = TRUE, ser_elibs = "/tmp/th798/16190373/RtmphamfQo/file35e6533ca6695.rds") An irrecoverable exception occurred. R is aborting now ... * checking PDF version of manual ... OK > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: Empty data.table (0 rows and 3 cols): checking,master,release > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } >