Note: the module "R" cannot be unloaded because it was not loaded. WARNING: ignoring environment value of R_HOME R Under development (unstable) (2025-07-06 r88390) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-07-07/deps.csv", task.str = "949", release = "/scratch/th798/data.table-revdeps/2025-07-07/data.table_release_1.17.6.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-07-07/data.table_master_1.17.99.35544d34ce779599cb2ed8900da2ffbac0ffbf29.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/18347080/R-devel/949" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/18347080/R-devel/949/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "OmicNavigator" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/18347080/R-devel/949/library" [2] "/projects/genomic-ml/R/R-devel/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-07-07 01:05:01 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/18347080/R-devel/949/library' (as 'lib' is unspecified) also installing the dependencies 'tinysnapshot', 'faviconPlease', 'tinytest', 'ttdo' trying URL 'http://cloud.r-project.org/src/contrib/tinysnapshot_0.1.0.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/faviconPlease_0.1.4.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/tinytest_1.4.1.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/ttdo_0.0.10.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/OmicNavigator_1.15.0.tar.gz' * installing *source* package 'faviconPlease' ... ** this is package 'faviconPlease' version '0.1.4' ** package 'faviconPlease' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (faviconPlease) * installing *source* package 'tinytest' ... ** this is package 'tinytest' version '1.4.1' ** package 'tinytest' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytest) * installing *source* package 'OmicNavigator' ... ** this is package 'OmicNavigator' version '1.15.0' ** package 'OmicNavigator' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmicNavigator) * installing *source* package 'tinysnapshot' ... ** this is package 'tinysnapshot' version '0.1.0' ** package 'tinysnapshot' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinysnapshot) * installing *source* package 'ttdo' ... ** this is package 'ttdo' version '0.0.10' ** package 'ttdo' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ttdo) The downloaded source packages are in '/tmp/th798/18347080/Rtmp9iZKhO/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 22.571 2.489 33.552 > print(Sys.time()) [1] "2025-07-07 01:05:35 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-07-07 01:05:35 MST" Installing package into '/tmp/th798/18347080/R-devel/949/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/18347080/R-devel/949/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-07-07 01:06:02 MST" * using log directory '/tmp/th798/18347080/R-devel/949/OmicNavigator.Rcheck' * using R Under development (unstable) (2025-07-06 r88390) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'OmicNavigator/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'OmicNavigator' version '1.15.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'OmicNavigator' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'tinytest.R' ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > # Test files in inst/tinytest/ > if (requireNamespace("tinytest", quietly = TRUE)) { + suppressMessages(tinytest::test_package("OmicNavigator")) + } testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 6 tests OK testAdd.R..................... 6 tests OK testAdd.R..................... 7 tests OK testAdd.R..................... 7 tests OK 2.9s testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 1 tests OK testApp.R..................... 2 tests OK testApp.R..................... 3 tests OK testApp.R..................... 4 tests OK testApp.R..................... 5 tests OK testApp.R..................... 6 tests OK testApp.R..................... 7 tests OK testApp.R..................... 8 tests OK testApp.R..................... 9 tests OK testApp.R..................... 10 tests OK testApp.R..................... 11 tests OK testApp.R..................... 12 tests OK testApp.R..................... 13 tests OK testApp.R..................... 14 tests OK testApp.R..................... 15 tests OK testApp.R..................... 16 tests OK testApp.R..................... 16 tests OK testApp.R..................... 17 tests OK testApp.R..................... 17 tests OK testApp.R..................... 18 tests OK testApp.R..................... 18 tests OK testApp.R..................... 19 tests OK testApp.R..................... 20 tests OK testApp.R..................... 21 tests OK testApp.R..................... 22 tests OK testApp.R..................... 22 tests OK testApp.R..................... 22 tests OK testApp.R..................... 23 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 25 tests OK testApp.R..................... 26 tests OK testApp.R..................... 27 tests OK testApp.R..................... 27 tests OK testApp.R..................... 28 tests OK testApp.R..................... 29 tests OK testApp.R..................... 30 tests OK testApp.R..................... 31 tests OK testApp.R..................... 31 tests OK testApp.R..................... 32 tests OK testApp.R..................... 33 tests OK testApp.R..................... 34 tests OK testApp.R..................... 35 tests OK testApp.R..................... 36 tests OK testApp.R..................... 37 tests OK testApp.R..................... 38 tests OK testApp.R..................... 41 tests OK testApp.R..................... 42 tests OK testApp.R..................... 43 tests OK testApp.R..................... 43 tests OK testApp.R..................... 44 tests OK testApp.R..................... 45 tests OK testApp.R..................... 46 tests OK testApp.R..................... 47 tests OK testApp.R..................... 47 tests OK testApp.R..................... 48 tests OK testApp.R..................... 49 tests OK testApp.R..................... 50 tests OK testApp.R..................... 51 tests OK testApp.R..................... 51 tests OK testApp.R..................... 52 tests OK testApp.R..................... 52 tests OK testApp.R..................... 53 tests OK testApp.R..................... 54 tests OK testApp.R..................... 55 tests OK testApp.R..................... 55 tests OK testApp.R..................... 56 tests OK testApp.R..................... 57 tests OK testApp.R..................... 58 tests OK testApp.R..................... 59 tests OK testApp.R..................... 60 tests OK testApp.R..................... 61 tests OK testApp.R..................... 62 tests OK testApp.R..................... 62 tests OK testApp.R..................... 63 tests OK testApp.R..................... 63 tests OK testApp.R..................... 63 tests OK 7.6s testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 1 tests OK testBugs.R.................... 1 tests OK testBugs.R.................... 1 tests OK testBugs.R.................... 2 tests OK testBugs.R.................... 2 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 4 tests OK testBugs.R.................... 5 tests OK testBugs.R.................... 6 tests OK testBugs.R.................... 7 tests OK testBugs.R.................... 7 tests OK testBugs.R.................... 8 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 18 tests OK 0.4s testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 1 tests OK testCheck.R................... 2 tests OK testCheck.R................... 3 tests OK testCheck.R................... 4 tests OK testCheck.R................... 5 tests OK testCheck.R................... 6 tests OK testCheck.R................... 6 tests OK testCheck.R................... 16 tests OK testCheck.R................... 17 tests OK testCheck.R................... 18 tests OK testCheck.R................... 19 tests OK testCheck.R................... 20 tests OK testCheck.R................... 21 tests OK testCheck.R................... 22 tests OK testCheck.R................... 23 tests OK testCheck.R................... 24 tests OK testCheck.R................... 25 tests OK testCheck.R................... 26 tests OK testCheck.R................... 27 tests OK testCheck.R................... 28 tests OK testCheck.R................... 29 tests OK testCheck.R................... 30 tests OK testCheck.R................... 31 tests OK testCheck.R................... 32 tests OK testCheck.R................... 33 tests OK testCheck.R................... 34 tests OK testCheck.R................... 35 tests OK testCheck.R................... 36 tests OK testCheck.R................... 37 tests OK testCheck.R................... 38 tests OK testCheck.R................... 39 tests OK testCheck.R................... 40 tests OK testCheck.R................... 41 tests OK testCheck.R................... 42 tests OK testCheck.R................... 43 tests OK testCheck.R................... 44 tests OK testCheck.R................... 45 tests OK testCheck.R................... 46 tests OK testCheck.R................... 47 tests OK testCheck.R................... 48 tests OK testCheck.R................... 49 tests OK testCheck.R................... 50 tests OK testCheck.R................... 50 tests OK testCheck.R................... 51 tests OK testCheck.R................... 51 tests OK testCheck.R................... 52 tests OK testCheck.R................... 53 tests OK testCheck.R................... 53 tests OK testCheck.R................... 54 tests OK testCheck.R................... 55 tests OK testCheck.R................... 56 tests OK testCheck.R................... 57 tests OK testCheck.R................... 58 tests OK testCheck.R................... 59 tests OK testCheck.R................... 59 tests OK testCheck.R................... 69 tests OK testCheck.R................... 69 tests OK testCheck.R................... 70 tests OK testCheck.R................... 71 tests OK testCheck.R................... 71 tests OK testCheck.R................... 72 tests OK testCheck.R................... 73 tests OK testCheck.R................... 74 tests OK testCheck.R................... 75 tests OK testCheck.R................... 76 tests OK testCheck.R................... 77 tests OK testCheck.R................... 77 tests OK testCheck.R................... 87 tests OK testCheck.R................... 87 tests OK testCheck.R................... 88 tests OK testCheck.R................... 89 tests OK testCheck.R................... 90 tests OK testCheck.R................... 91 tests OK testCheck.R................... 92 tests OK testCheck.R................... 93 tests OK testCheck.R................... 94 tests OK testCheck.R................... 94 tests OK testCheck.R................... 95 tests OK testCheck.R................... 95 tests OK testCheck.R................... 96 tests OK testCheck.R................... 97 tests OK testCheck.R................... 97 tests OK testCheck.R................... 98 tests OK testCheck.R................... 98 tests OK testCheck.R................... 98 tests OK testCheck.R................... 99 tests OK testCheck.R................... 99 tests OK testCheck.R................... 99 tests OK testCheck.R................... 100 tests OK testCheck.R................... 101 tests OK testCheck.R................... 102 tests OK testCheck.R................... 103 tests OK testCheck.R................... 103 tests OK testCheck.R................... 103 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 106 tests OK testCheck.R................... 106 tests OK testCheck.R................... 107 tests OK testCheck.R................... 108 tests OK testCheck.R................... 109 tests OK testCheck.R................... 109 tests OK testCheck.R................... 109 tests OK testCheck.R................... 110 tests OK testCheck.R................... 110 tests OK testCheck.R................... 110 tests OK testCheck.R................... 111 tests OK testCheck.R................... 111 tests OK testCheck.R................... 112 tests OK testCheck.R................... 112 tests OK testCheck.R................... 112 tests OK testCheck.R................... 113 tests OK testCheck.R................... 113 tests OK testCheck.R................... 113 tests OK testCheck.R................... 114 tests OK testCheck.R................... 114 tests OK testCheck.R................... 114 tests OK testCheck.R................... 115 tests OK testCheck.R................... 115 tests OK testCheck.R................... 115 tests OK testCheck.R................... 116 tests OK testCheck.R................... 116 tests OK testCheck.R................... 116 tests OK testCheck.R................... 117 tests OK testCheck.R................... 117 tests OK testCheck.R................... 117 tests OK testCheck.R................... 118 tests OK testCheck.R................... 118 tests OK testCheck.R................... 118 tests OK testCheck.R................... 119 tests OK testCheck.R................... 119 tests OK testCheck.R................... 119 tests OK testCheck.R................... 120 tests OK testCheck.R................... 121 tests OK testCheck.R................... 122 tests OK testCheck.R................... 123 tests OK testCheck.R................... 124 tests OK testCheck.R................... 125 tests OK testCheck.R................... 126 tests OK testCheck.R................... 127 tests OK testCheck.R................... 128 tests OK 0.3s testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 2 tests OK testCombine.R................. 2 tests OK testCombine.R................. 3 tests OK testCombine.R................. 3 tests OK testCombine.R................. 4 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 6 tests OK testCombine.R................. 6 tests OK testCombine.R................. 7 tests OK testCombine.R................. 8 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 10 tests OK testCombine.R................. 11 tests OK testCombine.R................. 12 tests OK testCombine.R................. 13 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 15 tests OK testCombine.R................. 16 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 18 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 20 tests OK 4.6s testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 1 tests 1 fails testExport.R.................. 1 tests 1 fails testExport.R.................. 1 tests 1 fails testExport.R.................. 2 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 4 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 6 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 8 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 10 tests 1 fails testExport.R.................. 11 tests 1 fails testExport.R.................. 12 tests 1 fails testExport.R.................. 13 tests 1 fails testExport.R.................. 14 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 16 tests 1 fails testExport.R.................. 17 tests 1 fails testExport.R.................. 18 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 20 tests 1 fails testExport.R.................. 21 tests 1 fails testExport.R.................. 22 tests 1 fails testExport.R.................. 23 tests 1 fails testExport.R.................. 24 tests 1 fails testExport.R.................. 25 tests 1 fails testExport.R.................. 25 tests 1 fails 12.0s testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 1 tests OK testExtraMetadata.R........... 1 tests OK testExtraMetadata.R........... 2 tests OK testExtraMetadata.R........... 3 tests OK testExtraMetadata.R........... 4 tests OK testExtraMetadata.R........... 5 tests OK testExtraMetadata.R........... 6 tests OK testExtraMetadata.R........... 7 tests OK testExtraMetadata.R........... 7 tests OK testExtraMetadata.R........... 8 tests OK testExtraMetadata.R........... 9 tests OK testExtraMetadata.R........... 10 tests OK testExtraMetadata.R........... 11 tests OK testExtraMetadata.R........... 12 tests OK testExtraMetadata.R........... 12 tests OK testExtraMetadata.R........... 13 tests OK testExtraMetadata.R........... 14 tests OK testExtraMetadata.R........... 15 tests OK testExtraMetadata.R........... 16 tests OK testExtraMetadata.R........... 16 tests OK testExtraMetadata.R........... 17 tests OK testExtraMetadata.R........... 18 tests OK testExtraMetadata.R........... 18 tests OK testExtraMetadata.R........... 18 tests OK 3.1s testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 1 tests OK testGet.R..................... 2 tests OK testGet.R..................... 3 tests OK testGet.R..................... 4 tests OK testGet.R..................... 5 tests OK testGet.R..................... 6 tests OK testGet.R..................... 7 tests OK testGet.R..................... 8 tests OK testGet.R..................... 9 tests OK testGet.R..................... 10 tests OK testGet.R..................... 11 tests OK testGet.R..................... 12 tests OK testGet.R..................... 13 tests OK testGet.R..................... 14 tests OK testGet.R..................... 15 tests OK testGet.R..................... 16 tests OK testGet.R..................... 17 tests OK testGet.R..................... 18 tests OK testGet.R..................... 19 tests OK testGet.R..................... 20 tests OK testGet.R..................... 21 tests OK testGet.R..................... 22 tests OK testGet.R..................... 23 tests OK testGet.R..................... 24 tests OK testGet.R..................... 25 tests OK testGet.R..................... 26 tests OK testGet.R..................... 27 tests OK testGet.R..................... 28 tests OK testGet.R..................... 29 tests OK testGet.R..................... 30 tests OK testGet.R..................... 31 tests OK testGet.R..................... 32 tests OK testGet.R..................... 33 tests OK testGet.R..................... 34 tests OK testGet.R..................... 35 tests OK testGet.R..................... 36 tests OK testGet.R..................... 37 tests OK testGet.R..................... 38 tests OK testGet.R..................... 39 tests OK testGet.R..................... 40 tests OK testGet.R..................... 41 tests OK testGet.R..................... 42 tests OK testGet.R..................... 43 tests OK testGet.R..................... 44 tests OK testGet.R..................... 45 tests OK testGet.R..................... 46 tests OK testGet.R..................... 47 tests OK testGet.R..................... 48 tests OK testGet.R..................... 49 tests OK testGet.R..................... 50 tests OK testGet.R..................... 51 tests OK testGet.R..................... 52 tests OK testGet.R..................... 53 tests OK testGet.R..................... 54 tests OK testGet.R..................... 55 tests OK testGet.R..................... 56 tests OK testGet.R..................... 57 tests OK testGet.R..................... 58 tests OK testGet.R..................... 59 tests OK testGet.R..................... 60 tests OK testGet.R..................... 61 tests OK testGet.R..................... 62 tests OK testGet.R..................... 63 tests OK testGet.R..................... 64 tests OK testGet.R..................... 65 tests OK testGet.R..................... 66 tests OK testGet.R..................... 67 tests OK testGet.R..................... 68 tests OK testGet.R..................... 69 tests OK testGet.R..................... 70 tests OK testGet.R..................... 71 tests OK testGet.R..................... 72 tests OK testGet.R..................... 73 tests OK testGet.R..................... 74 tests OK testGet.R..................... 75 tests OK testGet.R..................... 76 tests OK testGet.R..................... 77 tests OK testGet.R..................... 78 tests OK testGet.R..................... 79 tests OK testGet.R..................... 80 tests OK testGet.R..................... 81 tests OK testGet.R..................... 82 tests OK testGet.R..................... 83 tests OK testGet.R..................... 84 tests OK testGet.R..................... 85 tests OK testGet.R..................... 86 tests OK testGet.R..................... 87 tests OK testGet.R..................... 88 tests OK testGet.R..................... 89 tests OK testGet.R..................... 90 tests OK testGet.R..................... 91 tests OK testGet.R..................... 92 tests OK testGet.R..................... 93 tests OK testGet.R..................... 94 tests OK testGet.R..................... 95 tests OK testGet.R..................... 96 tests OK testGet.R..................... 97 tests OK testGet.R..................... 98 tests OK testGet.R..................... 99 tests OK testGet.R..................... 100 tests OK testGet.R..................... 101 tests OK testGet.R..................... 102 tests OK testGet.R..................... 103 tests OK testGet.R..................... 104 tests OK testGet.R..................... 105 tests OK testGet.R..................... 106 tests OK testGet.R..................... 107 tests OK testGet.R..................... 108 tests OK testGet.R..................... 109 tests OK testGet.R..................... 110 tests OK testGet.R..................... 111 tests OK testGet.R..................... 112 tests OK testGet.R..................... 113 tests OK testGet.R..................... 114 tests OK testGet.R..................... 115 tests OK testGet.R..................... 116 tests OK testGet.R..................... 117 tests OK testGet.R..................... 118 tests OK testGet.R..................... 119 tests OK testGet.R..................... 120 tests OK testGet.R..................... 121 tests OK testGet.R..................... 122 tests OK testGet.R..................... 123 tests OK testGet.R..................... 124 tests OK testGet.R..................... 125 tests OK testGet.R..................... 126 tests OK testGet.R..................... 127 tests OK testGet.R..................... 128 tests OK testGet.R..................... 129 tests OK testGet.R..................... 130 tests OK testGet.R..................... 131 tests OK testGet.R..................... 132 tests OK testGet.R..................... 133 tests OK testGet.R..................... 134 tests OK testGet.R..................... 135 tests OK testGet.R..................... 136 tests OK testGet.R..................... 137 tests OK testGet.R..................... 138 tests OK testGet.R..................... 139 tests OK testGet.R..................... 140 tests OK testGet.R..................... 141 tests OK testGet.R..................... 142 tests OK testGet.R..................... 143 tests OK testGet.R..................... 144 tests OK testGet.R..................... 145 tests OK testGet.R..................... 146 tests OK testGet.R..................... 147 tests OK testGet.R..................... 148 tests OK testGet.R..................... 149 tests OK testGet.R..................... 150 tests OK testGet.R..................... 150 tests OK testGet.R..................... 150 tests OK 15.9s testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 1 tests OK testGetNumeric.R.............. 2 tests OK testGetNumeric.R.............. 3 tests OK testGetNumeric.R.............. 4 tests OK testGetNumeric.R.............. 5 tests OK testGetNumeric.R.............. 6 tests OK testGetNumeric.R.............. 7 tests OK testGetNumeric.R.............. 8 tests OK testGetNumeric.R.............. 9 tests OK testGetNumeric.R.............. 10 tests OK testGetNumeric.R.............. 11 tests OK testGetNumeric.R.............. 12 tests OK testGetNumeric.R.............. 13 tests OK testGetNumeric.R.............. 14 tests OK testGetNumeric.R.............. 15 tests OK testGetNumeric.R.............. 16 tests OK testGetNumeric.R.............. 17 tests OK testGetNumeric.R.............. 18 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 20 tests OK testGetNumeric.R.............. 21 tests OK testGetNumeric.R.............. 22 tests OK testGetNumeric.R.............. 23 tests OK testGetNumeric.R.............. 24 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 26 tests OK testGetNumeric.R.............. 27 tests OK testGetNumeric.R.............. 28 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 30 tests OK testGetNumeric.R.............. 31 tests OK testGetNumeric.R.............. 32 tests OK testGetNumeric.R.............. 32 tests OK testGetNumeric.R.............. 32 tests OK 8.8s testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 1 tests OK testImport.R.................. 2 tests OK testImport.R.................. 3 tests OK testImport.R.................. 4 tests OK testImport.R.................. 5 tests OK testImport.R.................. 6 tests OK testImport.R.................. 7 tests OK testImport.R.................. 8 tests OK testImport.R.................. 9 tests OK testImport.R.................. 10 tests OK testImport.R.................. 11 tests OK testImport.R.................. 12 tests OK testImport.R.................. 13 tests OK testImport.R.................. 14 tests OK testImport.R.................. 15 tests OK testImport.R.................. 16 tests OK testImport.R.................. 17 tests OK testImport.R.................. 18 tests OK testImport.R.................. 19 tests OK testImport.R.................. 20 tests OK testImport.R.................. 20 tests OK testImport.R.................. 21 tests OK testImport.R.................. 22 tests OK testImport.R.................. 23 tests OK testImport.R.................. 24 tests OK testImport.R.................. 25 tests OK testImport.R.................. 26 tests OK testImport.R.................. 27 tests OK testImport.R.................. 28 tests OK testImport.R.................. 29 tests OK testImport.R.................. 30 tests OK testImport.R.................. 31 tests OK testImport.R.................. 32 tests OK testImport.R.................. 33 tests OK testImport.R.................. 34 tests OK testImport.R.................. 35 tests OK testImport.R.................. 36 tests OK testImport.R.................. 37 tests OK testImport.R.................. 38 tests OK testImport.R.................. 39 tests OK testImport.R.................. 39 tests OK testImport.R.................. 39 tests OK 11.0s testOverlaps.R................ 0 tests testOverlaps.R................ 0 tests testOverlaps.R................ 0 tests testOverlaps.R................ 1 tests OK testOverlaps.R................ 2 tests OK testOverlaps.R................ 3 tests OK testOverlaps.R................ 3 tests OK testOverlaps.R................ 4 tests OK 0.3s testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 1 tests OK testPiecemeal.R............... 2 tests OK testPiecemeal.R............... 3 tests OK testPiecemeal.R............... 4 tests OK testPiecemeal.R............... 5 tests OK testPiecemeal.R............... 5 tests OK testPiecemeal.R............... 6 tests OK testPiecemeal.R............... 7 tests OK testPiecemeal.R............... 8 tests OK testPiecemeal.R............... 9 tests OK testPiecemeal.R............... 10 tests OK testPiecemeal.R............... 11 tests OK testPiecemeal.R............... 11 tests OK testPiecemeal.R............... 11 tests OK testPiecemeal.R............... 12 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 14 tests OK testPiecemeal.R............... 15 tests OK testPiecemeal.R............... 16 tests OK testPiecemeal.R............... 17 tests OK testPiecemeal.R............... 18 tests OK testPiecemeal.R............... 18 tests OK testPiecemeal.R............... 19 tests OK testPiecemeal.R............... 20 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK 5.0s testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 1 tests OK testPlot.R.................... 1 tests OK testPlot.R.................... 1 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 3 tests OK testPlot.R.................... 3 tests OK testPlot.R.................... 4 tests OK testPlot.R.................... 4 tests OK testPlot.R.................... 4 tests OK testPlot.R.................... 5 tests OK testPlot.R.................... 6 tests OK testPlot.R.................... 7 tests OK testPlot.R.................... 8 tests OK testPlot.R.................... 9 tests OK testPlot.R.................... 10 tests OK testPlot.R.................... 11 tests OK testPlot.R.................... 12 tests OK testPlot.R.................... 13 tests OK testPlot.R.................... 13 tests OK testPlot.R.................... 14 tests OK testPlot.R.................... 15 tests OK testPlot.R.................... 16 tests OK testPlot.R.................... 17 tests OK testPlot.R.................... 18 tests OK testPlot.R.................... 19 tests OK testPlot.R.................... 20 tests OK testPlot.R.................... 21 tests OK testPlot.R.................... 22 tests OK testPlot.R.................... 22 tests OK testPlot.R.................... 23 tests OK testPlot.R.................... 23 tests OK testPlot.R.................... 24 tests OK testPlot.R.................... 25 tests OK testPlot.R.................... 26 tests OK testPlot.R.................... 27 tests OK testPlot.R.................... 27 tests OK testPlot.R.................... 27 tests OK testPlot.R.................... 28 tests OK testPlot.R.................... 29 tests OK testPlot.R.................... 30 tests OK testPlot.R.................... 31 tests OK testPlot.R.................... 32 tests OK testPlot.R.................... 33 tests OK testPlot.R.................... 34 tests OK testPlot.R.................... 35 tests OK testPlot.R.................... 36 tests OK testPlot.R.................... 37 tests OK testPlot.R.................... 38 tests OK testPlot.R.................... 39 tests OK testPlot.R.................... 40 tests OK testPlot.R.................... 41 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 43 tests OK testPlot.R.................... 44 tests OK testPlot.R.................... 45 tests OK testPlot.R.................... 46 tests OK testPlot.R.................... 47 tests OK testPlot.R.................... 48 tests OK testPlot.R.................... 49 tests OK testPlot.R.................... 50 tests OK testPlot.R.................... 50 tests OK testPlot.R.................... 51 tests OK testPlot.R.................... 52 tests OK testPlot.R.................... 53 tests OK testPlot.R.................... 54 tests OK testPlot.R.................... 55 tests OK testPlot.R.................... 56 tests OK testPlot.R.................... 57 tests OK testPlot.R.................... 58 tests OK testPlot.R.................... 58 tests OK testPlot.R.................... 59 tests OK testPlot.R.................... 60 tests OK testPlot.R.................... 61 tests OK testPlot.R.................... 62 tests OK testPlot.R.................... 63 tests OK testPlot.R.................... 64 tests OK testPlot.R.................... 65 tests OK testPlot.R.................... 65 tests OK testPlot.R.................... 66 tests OK testPlot.R.................... 67 tests OK testPlot.R.................... 68 tests OK testPlot.R.................... 69 tests OK testPlot.R.................... 70 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 72 tests OK testPlot.R.................... 73 tests OK testPlot.R.................... 74 tests OK testPlot.R.................... 75 tests OK testPlot.R.................... 76 tests OK testPlot.R.................... 77 tests OK testPlot.R.................... 78 tests OK testPlot.R.................... 79 tests OK testPlot.R.................... 80 tests OK testPlot.R.................... 81 tests OK testPlot.R.................... 82 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK 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142 tests OK testPlot.R.................... 143 tests OK testPlot.R.................... 143 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK 10.5s testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 1 tests OK testPrint.R................... 2 tests OK testPrint.R................... 3 tests OK 90ms testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 0 tests 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testValidate.R................ 10 tests OK testValidate.R................ 10 tests OK testValidate.R................ 10 tests OK testValidate.R................ 11 tests OK testValidate.R................ 11 tests OK testValidate.R................ 11 tests OK testValidate.R................ 12 tests OK testValidate.R................ 12 tests OK testValidate.R................ 12 tests OK testValidate.R................ 13 tests OK testValidate.R................ 13 tests OK testValidate.R................ 13 tests OK testValidate.R................ 14 tests OK testValidate.R................ 14 tests OK testValidate.R................ 14 tests OK testValidate.R................ 14 tests OK testValidate.R................ 15 tests OK testValidate.R................ 15 tests OK testValidate.R................ 15 tests OK testValidate.R................ 16 tests OK testValidate.R................ 17 tests OK testValidate.R................ 17 tests OK testValidate.R................ 17 tests OK testValidate.R................ 17 tests OK testValidate.R................ 18 tests OK testValidate.R................ 18 tests OK testValidate.R................ 18 tests OK testValidate.R................ 19 tests OK testValidate.R................ 19 tests OK testValidate.R................ 19 tests OK testValidate.R................ 20 tests OK testValidate.R................ 20 tests OK testValidate.R................ 20 tests OK testValidate.R................ 21 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 23 tests OK testValidate.R................ 23 tests OK testValidate.R................ 23 tests OK testValidate.R................ 24 tests OK testValidate.R................ 24 tests OK testValidate.R................ 24 tests OK testValidate.R................ 25 tests OK testValidate.R................ 25 tests OK testValidate.R................ 25 tests OK testValidate.R................ 26 tests OK 1.9s ----- FAILED[data]: testExport.R<31--32> call| expect_identical_xl(as.character(observed), specialDesc, info = "Export special character in description field") diff| < target diff| > current diff| @@ 1 / 1 @@  diff| < [1] "\316\262\342\200\220catenin and neural cell adhesion molecule (NCAM)" diff| > [1] "<80><90>catenin and neural cell adhesion\nmolecule (NCAM)" info| Export special character in description field Error: 1 out of 771 tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR See '/tmp/th798/18347080/R-devel/949/OmicNavigator.Rcheck/00check.log' for details. [1] "2025-07-07 01:09:25 MST" [1] "2025-07-07 01:09:25 MST" Installing package into '/tmp/th798/18347080/R-devel/949/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.99' ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mergelist.c -o mergelist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/18347080/R-devel/949/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-07-07 01:09:55 MST" * using log directory '/tmp/th798/18347080/R-devel/949/OmicNavigator.Rcheck' * using R Under development (unstable) (2025-07-06 r88390) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'OmicNavigator/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'OmicNavigator' version '1.15.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'OmicNavigator' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'tinytest.R' ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > # Test files in inst/tinytest/ > if (requireNamespace("tinytest", quietly = TRUE)) { + suppressMessages(tinytest::test_package("OmicNavigator")) + } testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 6 tests OK testAdd.R..................... 6 tests OK testAdd.R..................... 7 tests OK testAdd.R..................... 7 tests OK 2.6s testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 1 tests OK testApp.R..................... 2 tests OK testApp.R..................... 3 tests OK testApp.R..................... 4 tests OK testApp.R..................... 5 tests OK testApp.R..................... 6 tests OK testApp.R..................... 7 tests OK testApp.R..................... 8 tests OK testApp.R..................... 9 tests OK testApp.R..................... 10 tests OK testApp.R..................... 11 tests OK testApp.R..................... 12 tests OK testApp.R..................... 13 tests OK testApp.R..................... 14 tests OK testApp.R..................... 15 tests OK testApp.R..................... 16 tests OK testApp.R..................... 16 tests OK testApp.R..................... 17 tests OK testApp.R..................... 17 tests OK testApp.R..................... 18 tests OK testApp.R..................... 18 tests OK testApp.R..................... 19 tests OK testApp.R..................... 20 tests OK testApp.R..................... 21 tests OK testApp.R..................... 22 tests OK testApp.R..................... 22 tests OK testApp.R..................... 22 tests OK testApp.R..................... 23 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 25 tests OK testApp.R..................... 26 tests OK testApp.R..................... 27 tests OK testApp.R..................... 27 tests OK testApp.R..................... 28 tests OK testApp.R..................... 29 tests OK testApp.R..................... 30 tests OK testApp.R..................... 31 tests OK testApp.R..................... 31 tests OK testApp.R..................... 32 tests OK testApp.R..................... 33 tests OK testApp.R..................... 34 tests OK testApp.R..................... 35 tests OK testApp.R..................... 36 tests OK testApp.R..................... 37 tests OK testApp.R..................... 38 tests OK testApp.R..................... 41 tests OK testApp.R..................... 42 tests OK testApp.R..................... 43 tests OK testApp.R..................... 43 tests OK testApp.R..................... 44 tests OK testApp.R..................... 45 tests OK testApp.R..................... 46 tests OK testApp.R..................... 47 tests OK testApp.R..................... 47 tests OK testApp.R..................... 48 tests OK testApp.R..................... 49 tests OK testApp.R..................... 50 tests OK testApp.R..................... 51 tests OK testApp.R..................... 51 tests OK testApp.R..................... 52 tests OK testApp.R..................... 52 tests OK testApp.R..................... 53 tests OK testApp.R..................... 54 tests OK testApp.R..................... 55 tests OK testApp.R..................... 55 tests OK testApp.R..................... 56 tests OK testApp.R..................... 57 tests OK testApp.R..................... 58 tests OK testApp.R..................... 59 tests OK testApp.R..................... 60 tests OK testApp.R..................... 61 tests OK testApp.R..................... 62 tests OK testApp.R..................... 62 tests OK testApp.R..................... 63 tests OK testApp.R..................... 63 tests OK testApp.R..................... 63 tests OK 6.5s testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 1 tests OK testBugs.R.................... 1 tests OK testBugs.R.................... 1 tests OK testBugs.R.................... 2 tests OK testBugs.R.................... 2 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 4 tests OK testBugs.R.................... 5 tests OK testBugs.R.................... 6 tests OK testBugs.R.................... 7 tests OK testBugs.R.................... 7 tests OK testBugs.R.................... 8 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 18 tests OK 0.3s testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 1 tests OK testCheck.R................... 2 tests OK testCheck.R................... 3 tests OK testCheck.R................... 4 tests OK testCheck.R................... 5 tests OK testCheck.R................... 6 tests OK testCheck.R................... 6 tests OK testCheck.R................... 16 tests OK testCheck.R................... 17 tests OK testCheck.R................... 18 tests OK testCheck.R................... 19 tests OK testCheck.R................... 20 tests OK testCheck.R................... 21 tests OK testCheck.R................... 22 tests OK testCheck.R................... 23 tests OK testCheck.R................... 24 tests OK testCheck.R................... 25 tests OK testCheck.R................... 26 tests OK testCheck.R................... 27 tests OK testCheck.R................... 28 tests OK testCheck.R................... 29 tests OK testCheck.R................... 30 tests OK testCheck.R................... 31 tests OK testCheck.R................... 32 tests OK testCheck.R................... 33 tests OK testCheck.R................... 34 tests OK testCheck.R................... 35 tests OK testCheck.R................... 36 tests OK testCheck.R................... 37 tests OK testCheck.R................... 38 tests OK testCheck.R................... 39 tests OK testCheck.R................... 40 tests OK testCheck.R................... 41 tests OK testCheck.R................... 42 tests OK testCheck.R................... 43 tests OK testCheck.R................... 44 tests OK testCheck.R................... 45 tests OK testCheck.R................... 46 tests OK testCheck.R................... 47 tests OK testCheck.R................... 48 tests OK testCheck.R................... 49 tests OK testCheck.R................... 50 tests OK testCheck.R................... 50 tests OK testCheck.R................... 51 tests OK testCheck.R................... 51 tests OK testCheck.R................... 52 tests OK testCheck.R................... 53 tests OK testCheck.R................... 53 tests OK testCheck.R................... 54 tests OK testCheck.R................... 55 tests OK testCheck.R................... 56 tests OK testCheck.R................... 57 tests OK testCheck.R................... 58 tests OK testCheck.R................... 59 tests OK testCheck.R................... 59 tests OK testCheck.R................... 69 tests OK testCheck.R................... 69 tests OK testCheck.R................... 70 tests OK testCheck.R................... 71 tests OK testCheck.R................... 71 tests OK testCheck.R................... 72 tests OK testCheck.R................... 73 tests OK testCheck.R................... 74 tests OK testCheck.R................... 75 tests OK testCheck.R................... 76 tests OK testCheck.R................... 77 tests OK testCheck.R................... 77 tests OK testCheck.R................... 87 tests OK testCheck.R................... 87 tests OK testCheck.R................... 88 tests OK testCheck.R................... 89 tests OK testCheck.R................... 90 tests OK testCheck.R................... 91 tests OK testCheck.R................... 92 tests OK testCheck.R................... 93 tests OK testCheck.R................... 94 tests OK testCheck.R................... 94 tests OK testCheck.R................... 95 tests OK testCheck.R................... 95 tests OK testCheck.R................... 96 tests OK testCheck.R................... 97 tests OK testCheck.R................... 97 tests OK testCheck.R................... 98 tests OK testCheck.R................... 98 tests OK testCheck.R................... 98 tests OK testCheck.R................... 99 tests OK testCheck.R................... 99 tests OK testCheck.R................... 99 tests OK testCheck.R................... 100 tests OK testCheck.R................... 101 tests OK testCheck.R................... 102 tests OK testCheck.R................... 103 tests OK testCheck.R................... 103 tests OK testCheck.R................... 103 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 106 tests OK testCheck.R................... 106 tests OK testCheck.R................... 107 tests OK testCheck.R................... 108 tests OK testCheck.R................... 109 tests OK testCheck.R................... 109 tests OK testCheck.R................... 109 tests OK testCheck.R................... 110 tests OK testCheck.R................... 110 tests OK testCheck.R................... 110 tests OK testCheck.R................... 111 tests OK testCheck.R................... 111 tests OK testCheck.R................... 112 tests OK testCheck.R................... 112 tests OK testCheck.R................... 112 tests OK testCheck.R................... 113 tests OK testCheck.R................... 113 tests OK testCheck.R................... 113 tests OK testCheck.R................... 114 tests OK testCheck.R................... 114 tests OK testCheck.R................... 114 tests OK testCheck.R................... 115 tests OK testCheck.R................... 115 tests OK testCheck.R................... 115 tests OK testCheck.R................... 116 tests OK testCheck.R................... 116 tests OK testCheck.R................... 116 tests OK testCheck.R................... 117 tests OK testCheck.R................... 117 tests OK testCheck.R................... 117 tests OK testCheck.R................... 118 tests OK testCheck.R................... 118 tests OK testCheck.R................... 118 tests OK testCheck.R................... 119 tests OK testCheck.R................... 119 tests OK testCheck.R................... 119 tests OK testCheck.R................... 120 tests OK testCheck.R................... 121 tests OK testCheck.R................... 122 tests OK testCheck.R................... 123 tests OK testCheck.R................... 124 tests OK testCheck.R................... 125 tests OK testCheck.R................... 126 tests OK testCheck.R................... 127 tests OK testCheck.R................... 128 tests OK 0.2s testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 2 tests OK testCombine.R................. 2 tests OK testCombine.R................. 3 tests OK testCombine.R................. 3 tests OK testCombine.R................. 4 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 6 tests OK testCombine.R................. 6 tests OK testCombine.R................. 7 tests OK testCombine.R................. 8 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 10 tests OK testCombine.R................. 11 tests OK testCombine.R................. 12 tests OK testCombine.R................. 13 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 15 tests OK testCombine.R................. 16 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 18 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 20 tests OK 4.3s testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 1 tests 1 fails testExport.R.................. 1 tests 1 fails testExport.R.................. 1 tests 1 fails testExport.R.................. 2 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 4 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 6 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 8 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 10 tests 1 fails testExport.R.................. 11 tests 1 fails testExport.R.................. 12 tests 1 fails testExport.R.................. 13 tests 1 fails testExport.R.................. 14 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 16 tests 1 fails testExport.R.................. 17 tests 1 fails testExport.R.................. 18 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 20 tests 1 fails testExport.R.................. 21 tests 1 fails testExport.R.................. 22 tests 1 fails testExport.R.................. 23 tests 1 fails testExport.R.................. 24 tests 1 fails testExport.R.................. 25 tests 1 fails testExport.R.................. 25 tests 1 fails 11.1s testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 1 tests OK testExtraMetadata.R........... 1 tests OK testExtraMetadata.R........... 2 tests OK testExtraMetadata.R........... 3 tests OK testExtraMetadata.R........... 4 tests OK testExtraMetadata.R........... 5 tests OK testExtraMetadata.R........... 6 tests OK testExtraMetadata.R........... 7 tests OK testExtraMetadata.R........... 7 tests OK testExtraMetadata.R........... 8 tests OK testExtraMetadata.R........... 9 tests OK testExtraMetadata.R........... 10 tests OK testExtraMetadata.R........... 11 tests OK testExtraMetadata.R........... 12 tests OK testExtraMetadata.R........... 12 tests OK testExtraMetadata.R........... 13 tests OK testExtraMetadata.R........... 14 tests OK testExtraMetadata.R........... 15 tests OK testExtraMetadata.R........... 16 tests OK testExtraMetadata.R........... 16 tests OK testExtraMetadata.R........... 17 tests OK testExtraMetadata.R........... 18 tests OK testExtraMetadata.R........... 18 tests OK testExtraMetadata.R........... 18 tests OK 3.0s testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 1 tests OK testGet.R..................... 2 tests OK testGet.R..................... 3 tests OK testGet.R..................... 4 tests OK testGet.R..................... 5 tests OK testGet.R..................... 6 tests OK testGet.R..................... 7 tests OK testGet.R..................... 8 tests OK testGet.R..................... 9 tests OK testGet.R..................... 10 tests OK testGet.R..................... 11 tests OK testGet.R..................... 12 tests OK testGet.R..................... 13 tests OK testGet.R..................... 14 tests OK testGet.R..................... 15 tests OK testGet.R..................... 16 tests OK testGet.R..................... 17 tests OK testGet.R..................... 18 tests OK testGet.R..................... 19 tests OK testGet.R..................... 20 tests OK testGet.R..................... 21 tests OK testGet.R..................... 22 tests OK testGet.R..................... 23 tests OK testGet.R..................... 24 tests OK testGet.R..................... 25 tests OK testGet.R..................... 26 tests OK testGet.R..................... 27 tests OK testGet.R..................... 28 tests OK testGet.R..................... 29 tests OK testGet.R..................... 30 tests OK testGet.R..................... 31 tests OK testGet.R..................... 32 tests OK testGet.R..................... 33 tests OK testGet.R..................... 34 tests OK testGet.R..................... 35 tests OK testGet.R..................... 36 tests OK testGet.R..................... 37 tests OK testGet.R..................... 38 tests OK testGet.R..................... 39 tests OK testGet.R..................... 40 tests OK testGet.R..................... 41 tests OK testGet.R..................... 42 tests OK testGet.R..................... 43 tests OK testGet.R..................... 44 tests OK testGet.R..................... 45 tests OK testGet.R..................... 46 tests OK testGet.R..................... 47 tests OK testGet.R..................... 48 tests OK testGet.R..................... 49 tests OK testGet.R..................... 50 tests OK testGet.R..................... 51 tests OK testGet.R..................... 52 tests OK testGet.R..................... 53 tests OK testGet.R..................... 54 tests OK testGet.R..................... 55 tests OK testGet.R..................... 56 tests OK testGet.R..................... 57 tests OK testGet.R..................... 58 tests OK testGet.R..................... 59 tests OK testGet.R..................... 60 tests OK testGet.R..................... 61 tests OK testGet.R..................... 62 tests OK testGet.R..................... 63 tests OK testGet.R..................... 64 tests OK testGet.R..................... 65 tests OK testGet.R..................... 66 tests OK testGet.R..................... 67 tests OK testGet.R..................... 68 tests OK testGet.R..................... 69 tests OK testGet.R..................... 70 tests OK testGet.R..................... 71 tests OK testGet.R..................... 72 tests OK testGet.R..................... 73 tests OK testGet.R..................... 74 tests OK testGet.R..................... 75 tests OK testGet.R..................... 76 tests OK testGet.R..................... 77 tests OK testGet.R..................... 78 tests OK testGet.R..................... 79 tests OK testGet.R..................... 80 tests OK testGet.R..................... 81 tests OK testGet.R..................... 82 tests OK testGet.R..................... 83 tests OK testGet.R..................... 84 tests OK testGet.R..................... 85 tests OK testGet.R..................... 86 tests OK testGet.R..................... 87 tests OK testGet.R..................... 88 tests OK testGet.R..................... 89 tests OK testGet.R..................... 90 tests OK testGet.R..................... 91 tests OK testGet.R..................... 92 tests OK testGet.R..................... 93 tests OK testGet.R..................... 94 tests OK testGet.R..................... 95 tests OK testGet.R..................... 96 tests OK testGet.R..................... 97 tests OK testGet.R..................... 98 tests OK testGet.R..................... 99 tests OK testGet.R..................... 100 tests OK testGet.R..................... 101 tests OK testGet.R..................... 102 tests OK testGet.R..................... 103 tests OK testGet.R..................... 104 tests OK testGet.R..................... 105 tests OK testGet.R..................... 106 tests OK testGet.R..................... 107 tests OK testGet.R..................... 108 tests OK testGet.R..................... 109 tests OK testGet.R..................... 110 tests OK testGet.R..................... 111 tests OK testGet.R..................... 112 tests OK testGet.R..................... 113 tests OK testGet.R..................... 114 tests OK testGet.R..................... 115 tests OK testGet.R..................... 116 tests OK testGet.R..................... 117 tests OK testGet.R..................... 118 tests OK testGet.R..................... 119 tests OK testGet.R..................... 120 tests OK testGet.R..................... 121 tests OK testGet.R..................... 122 tests OK testGet.R..................... 123 tests OK testGet.R..................... 124 tests OK testGet.R..................... 125 tests OK testGet.R..................... 126 tests OK testGet.R..................... 127 tests OK testGet.R..................... 128 tests OK testGet.R..................... 129 tests OK testGet.R..................... 130 tests OK testGet.R..................... 131 tests OK testGet.R..................... 132 tests OK testGet.R..................... 133 tests OK testGet.R..................... 134 tests OK testGet.R..................... 135 tests OK testGet.R..................... 136 tests OK testGet.R..................... 137 tests OK testGet.R..................... 138 tests OK testGet.R..................... 139 tests OK testGet.R..................... 140 tests OK testGet.R..................... 141 tests OK testGet.R..................... 142 tests OK testGet.R..................... 143 tests OK testGet.R..................... 144 tests OK testGet.R..................... 145 tests OK testGet.R..................... 146 tests OK testGet.R..................... 147 tests OK testGet.R..................... 148 tests OK testGet.R..................... 149 tests OK testGet.R..................... 150 tests OK testGet.R..................... 150 tests OK testGet.R..................... 150 tests OK 15.7s testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 1 tests OK testGetNumeric.R.............. 2 tests OK testGetNumeric.R.............. 3 tests OK testGetNumeric.R.............. 4 tests OK testGetNumeric.R.............. 5 tests OK testGetNumeric.R.............. 6 tests OK testGetNumeric.R.............. 7 tests OK testGetNumeric.R.............. 8 tests OK testGetNumeric.R.............. 9 tests OK testGetNumeric.R.............. 10 tests OK testGetNumeric.R.............. 11 tests OK testGetNumeric.R.............. 12 tests OK testGetNumeric.R.............. 13 tests OK testGetNumeric.R.............. 14 tests OK testGetNumeric.R.............. 15 tests OK testGetNumeric.R.............. 16 tests OK testGetNumeric.R.............. 17 tests OK testGetNumeric.R.............. 18 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 20 tests OK testGetNumeric.R.............. 21 tests OK testGetNumeric.R.............. 22 tests OK testGetNumeric.R.............. 23 tests OK testGetNumeric.R.............. 24 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 26 tests OK testGetNumeric.R.............. 27 tests OK testGetNumeric.R.............. 28 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 30 tests OK testGetNumeric.R.............. 31 tests OK testGetNumeric.R.............. 32 tests OK testGetNumeric.R.............. 32 tests OK testGetNumeric.R.............. 32 tests OK 8.5s testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 1 tests OK testImport.R.................. 2 tests OK testImport.R.................. 3 tests OK testImport.R.................. 4 tests OK testImport.R.................. 5 tests OK testImport.R.................. 6 tests OK testImport.R.................. 7 tests OK testImport.R.................. 8 tests OK testImport.R.................. 9 tests OK testImport.R.................. 10 tests OK testImport.R.................. 11 tests OK testImport.R.................. 12 tests OK testImport.R.................. 13 tests OK testImport.R.................. 14 tests OK testImport.R.................. 15 tests OK testImport.R.................. 16 tests OK testImport.R.................. 17 tests OK testImport.R.................. 18 tests OK testImport.R.................. 19 tests OK testImport.R.................. 20 tests OK testImport.R.................. 20 tests OK testImport.R.................. 21 tests OK testImport.R.................. 22 tests OK testImport.R.................. 23 tests OK testImport.R.................. 24 tests OK testImport.R.................. 25 tests OK testImport.R.................. 26 tests OK testImport.R.................. 27 tests OK testImport.R.................. 28 tests OK testImport.R.................. 29 tests OK testImport.R.................. 30 tests OK testImport.R.................. 31 tests OK testImport.R.................. 32 tests OK testImport.R.................. 33 tests OK testImport.R.................. 34 tests OK testImport.R.................. 35 tests OK testImport.R.................. 36 tests OK testImport.R.................. 37 tests OK testImport.R.................. 38 tests OK testImport.R.................. 39 tests OK testImport.R.................. 39 tests OK testImport.R.................. 39 tests OK 10.7s testOverlaps.R................ 0 tests testOverlaps.R................ 0 tests testOverlaps.R................ 0 tests testOverlaps.R................ 1 tests OK testOverlaps.R................ 2 tests OK testOverlaps.R................ 3 tests OK testOverlaps.R................ 3 tests OK testOverlaps.R................ 4 tests OK 0.2s testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 1 tests OK testPiecemeal.R............... 2 tests OK testPiecemeal.R............... 3 tests OK testPiecemeal.R............... 4 tests OK testPiecemeal.R............... 5 tests OK testPiecemeal.R............... 5 tests OK testPiecemeal.R............... 6 tests OK testPiecemeal.R............... 7 tests OK testPiecemeal.R............... 8 tests OK testPiecemeal.R............... 9 tests OK testPiecemeal.R............... 10 tests OK testPiecemeal.R............... 11 tests OK testPiecemeal.R............... 11 tests OK testPiecemeal.R............... 11 tests OK testPiecemeal.R............... 12 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 14 tests OK testPiecemeal.R............... 15 tests OK testPiecemeal.R............... 16 tests OK testPiecemeal.R............... 17 tests OK testPiecemeal.R............... 18 tests OK testPiecemeal.R............... 18 tests OK testPiecemeal.R............... 19 tests OK testPiecemeal.R............... 20 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK 4.2s testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 1 tests OK testPlot.R.................... 1 tests OK testPlot.R.................... 1 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 3 tests OK testPlot.R.................... 3 tests OK testPlot.R.................... 4 tests OK testPlot.R.................... 4 tests OK testPlot.R.................... 4 tests OK testPlot.R.................... 5 tests OK testPlot.R.................... 6 tests OK testPlot.R.................... 7 tests OK testPlot.R.................... 8 tests OK testPlot.R.................... 9 tests OK testPlot.R.................... 10 tests OK testPlot.R.................... 11 tests OK testPlot.R.................... 12 tests OK testPlot.R.................... 13 tests OK testPlot.R.................... 13 tests OK testPlot.R.................... 14 tests OK testPlot.R.................... 15 tests OK testPlot.R.................... 16 tests OK testPlot.R.................... 17 tests OK testPlot.R.................... 18 tests OK testPlot.R.................... 19 tests OK testPlot.R.................... 20 tests OK testPlot.R.................... 21 tests OK testPlot.R.................... 22 tests OK testPlot.R.................... 22 tests OK testPlot.R.................... 23 tests OK testPlot.R.................... 23 tests OK testPlot.R.................... 24 tests OK testPlot.R.................... 25 tests OK testPlot.R.................... 26 tests OK testPlot.R.................... 27 tests OK testPlot.R.................... 27 tests OK testPlot.R.................... 27 tests OK testPlot.R.................... 28 tests OK testPlot.R.................... 29 tests OK testPlot.R.................... 30 tests OK testPlot.R.................... 31 tests OK testPlot.R.................... 32 tests OK testPlot.R.................... 33 tests OK testPlot.R.................... 34 tests OK testPlot.R.................... 35 tests OK testPlot.R.................... 36 tests OK testPlot.R.................... 37 tests OK testPlot.R.................... 38 tests OK testPlot.R.................... 39 tests OK testPlot.R.................... 40 tests OK testPlot.R.................... 41 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 43 tests OK testPlot.R.................... 44 tests OK testPlot.R.................... 45 tests OK testPlot.R.................... 46 tests OK testPlot.R.................... 47 tests OK testPlot.R.................... 48 tests OK testPlot.R.................... 49 tests OK testPlot.R.................... 50 tests OK testPlot.R.................... 50 tests OK testPlot.R.................... 51 tests OK testPlot.R.................... 52 tests OK testPlot.R.................... 53 tests OK testPlot.R.................... 54 tests OK testPlot.R.................... 55 tests OK testPlot.R.................... 56 tests OK testPlot.R.................... 57 tests OK testPlot.R.................... 58 tests OK testPlot.R.................... 58 tests OK testPlot.R.................... 59 tests OK testPlot.R.................... 60 tests OK testPlot.R.................... 61 tests OK testPlot.R.................... 62 tests OK testPlot.R.................... 63 tests OK testPlot.R.................... 64 tests OK testPlot.R.................... 65 tests OK testPlot.R.................... 65 tests OK testPlot.R.................... 66 tests OK testPlot.R.................... 67 tests OK testPlot.R.................... 68 tests OK testPlot.R.................... 69 tests OK testPlot.R.................... 70 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 72 tests OK testPlot.R.................... 73 tests OK testPlot.R.................... 74 tests OK testPlot.R.................... 75 tests OK testPlot.R.................... 76 tests OK testPlot.R.................... 77 tests OK testPlot.R.................... 78 tests OK testPlot.R.................... 79 tests OK testPlot.R.................... 80 tests OK testPlot.R.................... 81 tests OK testPlot.R.................... 82 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 84 tests OK testPlot.R.................... 85 tests OK testPlot.R.................... 86 tests OK testPlot.R.................... 87 tests OK testPlot.R.................... 88 tests OK testPlot.R.................... 89 tests OK testPlot.R.................... 90 tests OK testPlot.R.................... 91 tests OK testPlot.R.................... 92 tests OK testPlot.R.................... 93 tests OK testPlot.R.................... 94 tests OK testPlot.R.................... 95 tests OK testPlot.R.................... 95 tests OK testPlot.R.................... 95 tests OK testPlot.R.................... 96 tests OK testPlot.R.................... 97 tests OK testPlot.R.................... 98 tests OK testPlot.R.................... 99 tests OK testPlot.R.................... 100 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 102 tests OK testPlot.R.................... 103 tests OK testPlot.R.................... 104 tests OK testPlot.R.................... 104 tests OK testPlot.R.................... 104 tests OK testPlot.R.................... 104 tests OK testPlot.R.................... 105 tests OK testPlot.R.................... 106 tests OK testPlot.R.................... 106 tests OK testPlot.R.................... 106 tests OK testPlot.R.................... 107 tests OK testPlot.R.................... 108 tests OK testPlot.R.................... 109 tests OK testPlot.R.................... 110 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 112 tests OK testPlot.R.................... 113 tests OK testPlot.R.................... 114 tests OK testPlot.R.................... 115 tests OK testPlot.R.................... 116 tests OK testPlot.R.................... 117 tests OK testPlot.R.................... 118 tests OK testPlot.R.................... 119 tests OK testPlot.R.................... 120 tests OK testPlot.R.................... 121 tests OK testPlot.R.................... 121 tests OK testPlot.R.................... 122 tests OK testPlot.R.................... 123 tests OK testPlot.R.................... 124 tests OK testPlot.R.................... 125 tests OK testPlot.R.................... 126 tests OK testPlot.R.................... 127 tests OK testPlot.R.................... 128 tests OK testPlot.R.................... 129 tests OK testPlot.R.................... 130 tests OK testPlot.R.................... 131 tests OK testPlot.R.................... 131 tests OK testPlot.R.................... 132 tests OK testPlot.R.................... 133 tests OK testPlot.R.................... 134 tests OK testPlot.R.................... 135 tests OK testPlot.R.................... 136 tests OK testPlot.R.................... 137 tests OK testPlot.R.................... 138 tests OK testPlot.R.................... 139 tests OK testPlot.R.................... 140 tests OK testPlot.R.................... 140 tests OK testPlot.R.................... 140 tests OK testPlot.R.................... 141 tests OK testPlot.R.................... 141 tests OK testPlot.R.................... 141 tests OK testPlot.R.................... 142 tests OK testPlot.R.................... 142 tests OK testPlot.R.................... 143 tests OK testPlot.R.................... 143 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK 9.4s testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 1 tests OK testPrint.R................... 2 tests OK testPrint.R................... 3 tests OK 0.1s testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 1 tests OK testSummary.R................. 2 tests OK testSummary.R................. 3 tests OK testSummary.R................. 4 tests OK 0.1s testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 1 tests OK testUpset.R................... 2 tests OK testUpset.R................... 2 tests OK testUpset.R................... 3 tests OK testUpset.R................... 4 tests OK testUpset.R................... 4 tests OK testUpset.R................... 5 tests OK testUpset.R................... 6 tests OK testUpset.R................... 7 tests OK testUpset.R................... 7 tests OK testUpset.R................... 8 tests OK testUpset.R................... 9 tests OK testUpset.R................... 9 tests OK testUpset.R................... 9 tests OK testUpset.R................... 10 tests OK testUpset.R................... 10 tests OK testUpset.R................... 11 tests OK testUpset.R................... 12 tests OK testUpset.R................... 13 tests OK testUpset.R................... 13 tests OK testUpset.R................... 13 tests OK testUpset.R................... 14 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 16 tests OK testUpset.R................... 17 tests OK testUpset.R................... 18 tests OK testUpset.R................... 18 tests OK testUpset.R................... 18 tests OK testUpset.R................... 19 tests OK testUpset.R................... 20 tests OK testUpset.R................... 21 tests OK testUpset.R................... 21 tests OK testUpset.R................... 21 tests OK testUpset.R................... 21 tests OK testUpset.R................... 22 tests OK testUpset.R................... 23 tests OK testUpset.R................... 23 tests OK testUpset.R................... 24 tests OK testUpset.R................... 25 tests OK testUpset.R................... 25 tests OK testUpset.R................... 26 tests OK testUpset.R................... 26 tests OK testUpset.R................... 26 tests OK testUpset.R................... 26 tests OK testUpset.R................... 27 tests OK testUpset.R................... 27 tests OK testUpset.R................... 27 tests OK testUpset.R................... 27 tests OK testUpset.R................... 28 tests OK testUpset.R................... 28 tests OK testUpset.R................... 28 tests OK testUpset.R................... 28 tests OK testUpset.R................... 29 tests OK testUpset.R................... 29 tests OK testUpset.R................... 29 tests OK testUpset.R................... 29 tests OK testUpset.R................... 30 tests OK testUpset.R................... 30 tests OK testUpset.R................... 31 tests OK testUpset.R................... 33 tests OK testUpset.R................... 33 tests OK testUpset.R................... 34 tests OK testUpset.R................... 38 tests OK testUpset.R................... 38 tests OK testUpset.R................... 39 tests OK testUpset.R................... 43 tests OK testUpset.R................... 44 tests OK testUpset.R................... 45 tests OK testUpset.R................... 45 tests OK testUpset.R................... 45 tests OK testUpset.R................... 45 tests OK testUpset.R................... 46 tests OK testUpset.R................... 46 tests OK testUpset.R................... 47 tests OK testUpset.R................... 47 tests OK testUpset.R................... 48 tests OK testUpset.R................... 49 tests OK testUpset.R................... 50 tests OK testUpset.R................... 50 tests OK testUpset.R................... 50 tests OK testUpset.R................... 51 tests OK testUpset.R................... 52 tests OK testUpset.R................... 53 tests OK testUpset.R................... 54 tests OK testUpset.R................... 54 tests OK testUpset.R................... 54 tests OK testUpset.R................... 54 tests OK testUpset.R................... 55 tests OK testUpset.R................... 55 tests OK testUpset.R................... 55 tests OK testUpset.R................... 56 tests OK testUpset.R................... 57 tests OK testUpset.R................... 58 tests OK testUpset.R................... 58 tests OK testUpset.R................... 58 tests OK testUpset.R................... 59 tests OK testUpset.R................... 60 tests OK testUpset.R................... 61 tests OK testUpset.R................... 61 tests OK testUpset.R................... 61 tests OK testUpset.R................... 61 tests OK testUpset.R................... 61 tests OK testUpset.R................... 62 tests OK testUpset.R................... 62 tests OK testUpset.R................... 62 tests OK testUpset.R................... 63 tests OK testUpset.R................... 63 tests OK testUpset.R................... 64 tests OK testUpset.R................... 65 tests OK testUpset.R................... 65 tests OK testUpset.R................... 65 tests OK 19.6s testUtility.R................. 0 tests testUtility.R................. 0 tests testUtility.R................. 0 tests testUtility.R................. 0 tests testUtility.R................. 0 tests testUtility.R................. 0 tests testUtility.R................. 1 tests OK testUtility.R................. 1 tests OK testUtility.R................. 1 tests OK testUtility.R................. 1 tests OK testUtility.R................. 2 tests OK testUtility.R................. 2 tests OK testUtility.R................. 3 tests OK 0.2s testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 1 tests OK testValidate.R................ 2 tests OK testValidate.R................ 3 tests OK testValidate.R................ 3 tests OK testValidate.R................ 3 tests OK testValidate.R................ 4 tests OK testValidate.R................ 4 tests OK testValidate.R................ 4 tests OK testValidate.R................ 5 tests OK testValidate.R................ 5 tests OK testValidate.R................ 5 tests OK testValidate.R................ 6 tests OK testValidate.R................ 6 tests OK testValidate.R................ 6 tests OK testValidate.R................ 6 tests OK testValidate.R................ 7 tests OK testValidate.R................ 7 tests OK testValidate.R................ 7 tests OK testValidate.R................ 8 tests OK testValidate.R................ 9 tests OK testValidate.R................ 10 tests OK testValidate.R................ 10 tests OK testValidate.R................ 10 tests OK testValidate.R................ 11 tests OK testValidate.R................ 11 tests OK testValidate.R................ 11 tests OK testValidate.R................ 12 tests OK testValidate.R................ 12 tests OK testValidate.R................ 12 tests OK testValidate.R................ 13 tests OK testValidate.R................ 13 tests OK testValidate.R................ 13 tests OK testValidate.R................ 14 tests OK testValidate.R................ 14 tests OK testValidate.R................ 14 tests OK testValidate.R................ 14 tests OK testValidate.R................ 15 tests OK testValidate.R................ 15 tests OK testValidate.R................ 15 tests OK testValidate.R................ 16 tests OK testValidate.R................ 17 tests OK testValidate.R................ 17 tests OK testValidate.R................ 17 tests OK testValidate.R................ 17 tests OK testValidate.R................ 18 tests OK testValidate.R................ 18 tests OK testValidate.R................ 18 tests OK testValidate.R................ 19 tests OK testValidate.R................ 19 tests OK testValidate.R................ 19 tests OK testValidate.R................ 20 tests OK testValidate.R................ 20 tests OK testValidate.R................ 20 tests OK testValidate.R................ 21 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 23 tests OK testValidate.R................ 23 tests OK testValidate.R................ 23 tests OK testValidate.R................ 24 tests OK testValidate.R................ 24 tests OK testValidate.R................ 24 tests OK testValidate.R................ 25 tests OK testValidate.R................ 25 tests OK testValidate.R................ 25 tests OK testValidate.R................ 26 tests OK 1.9s ----- FAILED[data]: testExport.R<31--32> call| expect_identical_xl(as.character(observed), specialDesc, info = "Export special character in description field") diff| < target diff| > current diff| @@ 1 / 1 @@  diff| < [1] "\316\262\342\200\220catenin and neural cell adhesion molecule (NCAM)" diff| > [1] "<80><90>catenin and neural cell adhesion\nmolecule (NCAM)" info| Export special character in description field Error: 1 out of 771 tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR See '/tmp/th798/18347080/R-devel/949/OmicNavigator.Rcheck/00check.log' for details. [1] "2025-07-07 01:13:15 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) --- R_Under_development_unstable_2025-07-06_r88390/release_1.17.6.Rcheck/00check.log 2025-07-07 01:09:25.710818737 -0700 +++ R_Under_development_unstable_2025-07-06_r88390/master_1.17.99.35544d34ce779599cb2ed8900da2ffbac0ffbf29.Rcheck/00check.log 2025-07-07 01:13:15.705026628 -0700 @@ -142,7 +142,7 @@ testAdd.R..................... 6 tests OK testAdd.R..................... 6 tests OK testAdd.R..................... 7 tests OK - testAdd.R..................... 7 tests OK 2.9s + testAdd.R..................... 7 tests OK 2.6s testApp.R..................... 0 tests testApp.R..................... 0 tests @@ -250,7 +250,7 @@ testApp.R..................... 62 tests OK testApp.R..................... 63 tests OK testApp.R..................... 63 tests OK - testApp.R..................... 63 tests OK 7.6s + testApp.R..................... 63 tests OK 6.5s testBugs.R.................... 0 tests testBugs.R.................... 0 tests @@ -278,7 +278,7 @@ testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK - testBugs.R.................... 18 tests OK 0.4s + testBugs.R.................... 18 tests OK 0.3s testCheck.R................... 0 tests testCheck.R................... 0 tests @@ -432,7 +432,7 @@ testCheck.R................... 125 tests OK testCheck.R................... 126 tests OK testCheck.R................... 127 tests OK - testCheck.R................... 128 tests OK 0.3s + testCheck.R................... 128 tests OK 0.2s testCombine.R................. 0 tests testCombine.R................. 0 tests @@ -489,7 +489,7 @@ testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK - testCombine.R................. 20 tests OK 4.6s + testCombine.R................. 20 tests OK 4.3s testExport.R.................. 0 tests testExport.R.................. 0 tests @@ -556,7 +556,7 @@ testExport.R.................. 23 tests 1 fails testExport.R.................. 24 tests 1 fails testExport.R.................. 25 tests 1 fails - testExport.R.................. 25 tests 1 fails 12.0s + testExport.R.................. 25 tests 1 fails 11.1s testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests @@ -591,7 +591,7 @@ testExtraMetadata.R........... 17 tests OK testExtraMetadata.R........... 18 tests OK testExtraMetadata.R........... 18 tests OK - testExtraMetadata.R........... 18 tests OK 3.1s + testExtraMetadata.R........... 18 tests OK 3.0s testGet.R..................... 0 tests testGet.R..................... 0 tests @@ -760,7 +760,7 @@ testGet.R..................... 149 tests OK testGet.R..................... 150 tests OK testGet.R..................... 150 tests OK - testGet.R..................... 150 tests OK 15.9s + testGet.R..................... 150 tests OK 15.7s testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests @@ -818,7 +818,7 @@ testGetNumeric.R.............. 31 tests OK testGetNumeric.R.............. 32 tests OK testGetNumeric.R.............. 32 tests OK - testGetNumeric.R.............. 32 tests OK 8.8s + testGetNumeric.R.............. 32 tests OK 8.5s testImport.R.................. 0 tests testImport.R.................. 0 tests @@ -879,7 +879,7 @@ testImport.R.................. 38 tests OK testImport.R.................. 39 tests OK testImport.R.................. 39 tests OK - testImport.R.................. 39 tests OK 11.0s + testImport.R.................. 39 tests OK 10.7s testOverlaps.R................ 0 tests testOverlaps.R................ 0 tests @@ -888,7 +888,7 @@ testOverlaps.R................ 2 tests OK testOverlaps.R................ 3 tests OK testOverlaps.R................ 3 tests OK - testOverlaps.R................ 4 tests OK 0.3s + testOverlaps.R................ 4 tests OK 0.2s testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests @@ -948,7 +948,7 @@ testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK - testPiecemeal.R............... 21 tests OK 5.0s + testPiecemeal.R............... 21 tests OK 4.2s testPlot.R.................... 0 tests testPlot.R.................... 0 tests @@ -1177,7 +1177,7 @@ testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK - testPlot.R.................... 145 tests OK 10.5s + testPlot.R.................... 145 tests OK 9.4s testPrint.R................... 0 tests testPrint.R................... 0 tests @@ -1187,7 +1187,7 @@ testPrint.R................... 0 tests testPrint.R................... 1 tests OK testPrint.R................... 2 tests OK - testPrint.R................... 3 tests OK 90ms + testPrint.R................... 3 tests OK 0.1s testSummary.R................. 0 tests testSummary.R................. 0 tests @@ -1340,7 +1340,7 @@ testUpset.R................... 64 tests OK testUpset.R................... 65 tests OK testUpset.R................... 65 tests OK - testUpset.R................... 65 tests OK 19.2s + testUpset.R................... 65 tests OK 19.6s testUtility.R................. 0 tests testUtility.R................. 0 tests > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: Empty data.table (0 rows and 3 cols): checking,master,release > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } > WARNING: ignoring environment value of R_HOME R version 4.5.1 (2025-06-13) -- "Great Square Root" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-07-07/deps.csv", task.str = "949", release = "/scratch/th798/data.table-revdeps/2025-07-07/data.table_release_1.17.6.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-07-07/data.table_master_1.17.99.35544d34ce779599cb2ed8900da2ffbac0ffbf29.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/18347080/R-release/949" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/18347080/R-release/949/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "OmicNavigator" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/18347080/R-release/949/library" [2] "/projects/genomic-ml/R/R-release/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-07-07 01:13:23 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/18347080/R-release/949/library' (as 'lib' is unspecified) also installing the dependencies 'tinysnapshot', 'faviconPlease', 'tinytest', 'ttdo' trying URL 'http://cloud.r-project.org/src/contrib/tinysnapshot_0.1.0.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/faviconPlease_0.1.4.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/tinytest_1.4.1.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/ttdo_0.0.10.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/OmicNavigator_1.15.0.tar.gz' * installing *source* package 'faviconPlease' ... ** this is package 'faviconPlease' version '0.1.4' ** package 'faviconPlease' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (faviconPlease) * installing *source* package 'tinytest' ... ** this is package 'tinytest' version '1.4.1' ** package 'tinytest' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytest) * installing *source* package 'OmicNavigator' ... ** this is package 'OmicNavigator' version '1.15.0' ** package 'OmicNavigator' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmicNavigator) * installing *source* package 'tinysnapshot' ... ** this is package 'tinysnapshot' version '0.1.0' ** package 'tinysnapshot' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinysnapshot) * installing *source* package 'ttdo' ... ** this is package 'ttdo' version '0.0.10' ** package 'ttdo' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ttdo) The downloaded source packages are in '/tmp/th798/18347080/RtmpqNg4Ns/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 22.634 2.138 30.452 > print(Sys.time()) [1] "2025-07-07 01:13:53 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-07-07 01:13:53 MST" Installing package into '/tmp/th798/18347080/R-release/949/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/18347080/R-release/949/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-07-07 01:14:22 MST" * using log directory '/tmp/th798/18347080/R-release/949/OmicNavigator.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'OmicNavigator/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'OmicNavigator' version '1.15.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'OmicNavigator' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'tinytest.R' ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > # Test files in inst/tinytest/ > if (requireNamespace("tinytest", quietly = TRUE)) { + suppressMessages(tinytest::test_package("OmicNavigator")) + } testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 6 tests OK testAdd.R..................... 6 tests OK testAdd.R..................... 7 tests OK testAdd.R..................... 7 tests OK 3.0s testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 1 tests OK testApp.R..................... 2 tests OK testApp.R..................... 3 tests OK testApp.R..................... 4 tests OK testApp.R..................... 5 tests OK testApp.R..................... 6 tests OK testApp.R..................... 7 tests OK testApp.R..................... 8 tests OK testApp.R..................... 9 tests OK testApp.R..................... 10 tests OK testApp.R..................... 11 tests OK testApp.R..................... 12 tests OK testApp.R..................... 13 tests OK testApp.R..................... 14 tests OK testApp.R..................... 15 tests OK testApp.R..................... 16 tests OK testApp.R..................... 16 tests OK testApp.R..................... 17 tests OK testApp.R..................... 17 tests OK testApp.R..................... 18 tests OK testApp.R..................... 18 tests OK testApp.R..................... 19 tests OK testApp.R..................... 20 tests OK testApp.R..................... 21 tests OK testApp.R..................... 22 tests OK testApp.R..................... 22 tests OK testApp.R..................... 22 tests OK testApp.R..................... 23 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 25 tests OK testApp.R..................... 26 tests OK testApp.R..................... 27 tests OK testApp.R..................... 27 tests OK testApp.R..................... 28 tests OK testApp.R..................... 29 tests OK testApp.R..................... 30 tests OK testApp.R..................... 31 tests OK testApp.R..................... 31 tests OK testApp.R..................... 32 tests OK testApp.R..................... 33 tests OK testApp.R..................... 34 tests OK testApp.R..................... 35 tests OK testApp.R..................... 36 tests OK testApp.R..................... 37 tests OK testApp.R..................... 38 tests OK testApp.R..................... 41 tests OK testApp.R..................... 42 tests OK testApp.R..................... 43 tests OK testApp.R..................... 43 tests OK testApp.R..................... 44 tests OK testApp.R..................... 45 tests OK testApp.R..................... 46 tests OK testApp.R..................... 47 tests OK testApp.R..................... 47 tests OK testApp.R..................... 48 tests OK testApp.R..................... 49 tests OK testApp.R..................... 50 tests OK testApp.R..................... 51 tests OK testApp.R..................... 51 tests OK testApp.R..................... 52 tests OK testApp.R..................... 52 tests OK testApp.R..................... 53 tests OK testApp.R..................... 54 tests OK testApp.R..................... 55 tests OK testApp.R..................... 55 tests OK testApp.R..................... 56 tests OK testApp.R..................... 57 tests OK testApp.R..................... 58 tests OK testApp.R..................... 59 tests OK testApp.R..................... 60 tests OK testApp.R..................... 61 tests OK testApp.R..................... 62 tests OK testApp.R..................... 62 tests OK testApp.R..................... 63 tests OK testApp.R..................... 63 tests OK testApp.R..................... 63 tests OK 7.5s testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 1 tests OK testBugs.R.................... 1 tests OK testBugs.R.................... 1 tests OK testBugs.R.................... 2 tests OK testBugs.R.................... 2 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 4 tests OK testBugs.R.................... 5 tests OK testBugs.R.................... 6 tests OK testBugs.R.................... 7 tests OK testBugs.R.................... 7 tests OK testBugs.R.................... 8 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 18 tests OK 0.3s testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 1 tests OK testCheck.R................... 2 tests OK testCheck.R................... 3 tests OK testCheck.R................... 4 tests OK testCheck.R................... 5 tests OK testCheck.R................... 6 tests OK testCheck.R................... 6 tests OK testCheck.R................... 16 tests OK testCheck.R................... 17 tests OK testCheck.R................... 18 tests OK testCheck.R................... 19 tests OK testCheck.R................... 20 tests OK testCheck.R................... 21 tests OK testCheck.R................... 22 tests OK testCheck.R................... 23 tests OK testCheck.R................... 24 tests OK testCheck.R................... 25 tests OK testCheck.R................... 26 tests OK testCheck.R................... 27 tests OK testCheck.R................... 28 tests OK testCheck.R................... 29 tests OK testCheck.R................... 30 tests OK testCheck.R................... 31 tests OK testCheck.R................... 32 tests OK testCheck.R................... 33 tests OK testCheck.R................... 34 tests OK testCheck.R................... 35 tests OK testCheck.R................... 36 tests OK testCheck.R................... 37 tests OK testCheck.R................... 38 tests OK testCheck.R................... 39 tests OK testCheck.R................... 40 tests OK testCheck.R................... 41 tests OK testCheck.R................... 42 tests OK testCheck.R................... 43 tests OK testCheck.R................... 44 tests OK testCheck.R................... 45 tests OK testCheck.R................... 46 tests OK testCheck.R................... 47 tests OK testCheck.R................... 48 tests OK testCheck.R................... 49 tests OK testCheck.R................... 50 tests OK testCheck.R................... 50 tests OK testCheck.R................... 51 tests OK testCheck.R................... 51 tests OK testCheck.R................... 52 tests OK testCheck.R................... 53 tests OK testCheck.R................... 53 tests OK testCheck.R................... 54 tests OK testCheck.R................... 55 tests OK testCheck.R................... 56 tests OK testCheck.R................... 57 tests OK testCheck.R................... 58 tests OK testCheck.R................... 59 tests OK testCheck.R................... 59 tests OK testCheck.R................... 69 tests OK testCheck.R................... 69 tests OK testCheck.R................... 70 tests OK testCheck.R................... 71 tests OK testCheck.R................... 71 tests OK testCheck.R................... 72 tests OK testCheck.R................... 73 tests OK testCheck.R................... 74 tests OK testCheck.R................... 75 tests OK testCheck.R................... 76 tests OK testCheck.R................... 77 tests OK testCheck.R................... 77 tests OK testCheck.R................... 87 tests OK testCheck.R................... 87 tests OK testCheck.R................... 88 tests OK testCheck.R................... 89 tests OK testCheck.R................... 90 tests OK testCheck.R................... 91 tests OK testCheck.R................... 92 tests OK testCheck.R................... 93 tests OK testCheck.R................... 94 tests OK testCheck.R................... 94 tests OK testCheck.R................... 95 tests OK testCheck.R................... 95 tests OK testCheck.R................... 96 tests OK testCheck.R................... 97 tests OK testCheck.R................... 97 tests OK testCheck.R................... 98 tests OK testCheck.R................... 98 tests OK testCheck.R................... 98 tests OK testCheck.R................... 99 tests OK testCheck.R................... 99 tests OK testCheck.R................... 99 tests OK testCheck.R................... 100 tests OK testCheck.R................... 101 tests OK testCheck.R................... 102 tests OK testCheck.R................... 103 tests OK testCheck.R................... 103 tests OK testCheck.R................... 103 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 106 tests OK testCheck.R................... 106 tests OK testCheck.R................... 107 tests OK testCheck.R................... 108 tests OK testCheck.R................... 109 tests OK testCheck.R................... 109 tests OK testCheck.R................... 109 tests OK testCheck.R................... 110 tests OK testCheck.R................... 110 tests OK testCheck.R................... 110 tests OK testCheck.R................... 111 tests OK testCheck.R................... 111 tests OK testCheck.R................... 112 tests OK testCheck.R................... 112 tests OK testCheck.R................... 112 tests OK testCheck.R................... 113 tests OK testCheck.R................... 113 tests OK testCheck.R................... 113 tests OK testCheck.R................... 114 tests OK testCheck.R................... 114 tests OK testCheck.R................... 114 tests OK testCheck.R................... 115 tests OK testCheck.R................... 115 tests OK testCheck.R................... 115 tests OK testCheck.R................... 116 tests OK testCheck.R................... 116 tests OK testCheck.R................... 116 tests OK testCheck.R................... 117 tests OK testCheck.R................... 117 tests OK testCheck.R................... 117 tests OK testCheck.R................... 118 tests OK testCheck.R................... 118 tests OK testCheck.R................... 118 tests OK testCheck.R................... 119 tests OK testCheck.R................... 119 tests OK testCheck.R................... 119 tests OK testCheck.R................... 120 tests OK testCheck.R................... 121 tests OK testCheck.R................... 122 tests OK testCheck.R................... 123 tests OK testCheck.R................... 124 tests OK testCheck.R................... 125 tests OK testCheck.R................... 126 tests OK testCheck.R................... 127 tests OK testCheck.R................... 128 tests OK 0.2s testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 2 tests OK testCombine.R................. 2 tests OK testCombine.R................. 3 tests OK testCombine.R................. 3 tests OK testCombine.R................. 4 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 6 tests OK testCombine.R................. 6 tests OK testCombine.R................. 7 tests OK testCombine.R................. 8 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 10 tests OK testCombine.R................. 11 tests OK testCombine.R................. 12 tests OK testCombine.R................. 13 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 15 tests OK testCombine.R................. 16 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 18 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 20 tests OK 4.4s testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 1 tests 1 fails testExport.R.................. 1 tests 1 fails testExport.R.................. 1 tests 1 fails testExport.R.................. 2 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 4 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 6 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 8 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 10 tests 1 fails testExport.R.................. 11 tests 1 fails testExport.R.................. 12 tests 1 fails testExport.R.................. 13 tests 1 fails testExport.R.................. 14 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 16 tests 1 fails testExport.R.................. 17 tests 1 fails testExport.R.................. 18 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 20 tests 1 fails testExport.R.................. 21 tests 1 fails testExport.R.................. 22 tests 1 fails testExport.R.................. 23 tests 1 fails testExport.R.................. 24 tests 1 fails testExport.R.................. 25 tests 1 fails testExport.R.................. 25 tests 1 fails 10.9s testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 1 tests OK testExtraMetadata.R........... 1 tests OK testExtraMetadata.R........... 2 tests OK testExtraMetadata.R........... 3 tests OK testExtraMetadata.R........... 4 tests OK testExtraMetadata.R........... 5 tests OK testExtraMetadata.R........... 6 tests OK testExtraMetadata.R........... 7 tests OK testExtraMetadata.R........... 7 tests OK testExtraMetadata.R........... 8 tests OK testExtraMetadata.R........... 9 tests OK testExtraMetadata.R........... 10 tests OK testExtraMetadata.R........... 11 tests OK testExtraMetadata.R........... 12 tests OK testExtraMetadata.R........... 12 tests OK testExtraMetadata.R........... 13 tests OK testExtraMetadata.R........... 14 tests OK testExtraMetadata.R........... 15 tests OK testExtraMetadata.R........... 16 tests OK testExtraMetadata.R........... 16 tests OK testExtraMetadata.R........... 17 tests OK testExtraMetadata.R........... 18 tests OK testExtraMetadata.R........... 18 tests OK testExtraMetadata.R........... 18 tests OK 3.2s testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 1 tests OK testGet.R..................... 2 tests OK testGet.R..................... 3 tests OK testGet.R..................... 4 tests OK testGet.R..................... 5 tests OK testGet.R..................... 6 tests OK testGet.R..................... 7 tests OK testGet.R..................... 8 tests OK testGet.R..................... 9 tests OK testGet.R..................... 10 tests OK testGet.R..................... 11 tests OK testGet.R..................... 12 tests OK testGet.R..................... 13 tests OK testGet.R..................... 14 tests OK testGet.R..................... 15 tests OK testGet.R..................... 16 tests OK testGet.R..................... 17 tests OK testGet.R..................... 18 tests OK testGet.R..................... 19 tests OK testGet.R..................... 20 tests OK testGet.R..................... 21 tests OK testGet.R..................... 22 tests OK testGet.R..................... 23 tests OK testGet.R..................... 24 tests OK testGet.R..................... 25 tests OK testGet.R..................... 26 tests OK testGet.R..................... 27 tests OK testGet.R..................... 28 tests OK testGet.R..................... 29 tests OK testGet.R..................... 30 tests OK testGet.R..................... 31 tests OK testGet.R..................... 32 tests OK testGet.R..................... 33 tests OK testGet.R..................... 34 tests OK testGet.R..................... 35 tests OK testGet.R..................... 36 tests OK testGet.R..................... 37 tests OK testGet.R..................... 38 tests OK testGet.R..................... 39 tests OK testGet.R..................... 40 tests OK testGet.R..................... 41 tests OK testGet.R..................... 42 tests OK testGet.R..................... 43 tests OK testGet.R..................... 44 tests OK testGet.R..................... 45 tests OK testGet.R..................... 46 tests OK testGet.R..................... 47 tests OK testGet.R..................... 48 tests OK testGet.R..................... 49 tests OK testGet.R..................... 50 tests OK testGet.R..................... 51 tests OK testGet.R..................... 52 tests OK testGet.R..................... 53 tests OK testGet.R..................... 54 tests OK testGet.R..................... 55 tests OK testGet.R..................... 56 tests OK testGet.R..................... 57 tests OK testGet.R..................... 58 tests OK testGet.R..................... 59 tests OK testGet.R..................... 60 tests OK testGet.R..................... 61 tests OK testGet.R..................... 62 tests OK testGet.R..................... 63 tests OK testGet.R..................... 64 tests OK testGet.R..................... 65 tests OK testGet.R..................... 66 tests OK testGet.R..................... 67 tests OK testGet.R..................... 68 tests OK testGet.R..................... 69 tests OK testGet.R..................... 70 tests OK testGet.R..................... 71 tests OK testGet.R..................... 72 tests OK testGet.R..................... 73 tests OK testGet.R..................... 74 tests OK testGet.R..................... 75 tests OK testGet.R..................... 76 tests OK testGet.R..................... 77 tests OK testGet.R..................... 78 tests OK testGet.R..................... 79 tests OK testGet.R..................... 80 tests OK testGet.R..................... 81 tests OK testGet.R..................... 82 tests OK testGet.R..................... 83 tests OK testGet.R..................... 84 tests OK testGet.R..................... 85 tests OK testGet.R..................... 86 tests OK testGet.R..................... 87 tests OK testGet.R..................... 88 tests OK testGet.R..................... 89 tests OK testGet.R..................... 90 tests OK testGet.R..................... 91 tests OK testGet.R..................... 92 tests OK testGet.R..................... 93 tests OK testGet.R..................... 94 tests OK testGet.R..................... 95 tests OK testGet.R..................... 96 tests OK testGet.R..................... 97 tests OK testGet.R..................... 98 tests OK testGet.R..................... 99 tests OK testGet.R..................... 100 tests OK testGet.R..................... 101 tests OK testGet.R..................... 102 tests OK testGet.R..................... 103 tests OK testGet.R..................... 104 tests OK testGet.R..................... 105 tests OK testGet.R..................... 106 tests OK testGet.R..................... 107 tests OK testGet.R..................... 108 tests OK testGet.R..................... 109 tests OK testGet.R..................... 110 tests OK testGet.R..................... 111 tests OK testGet.R..................... 112 tests OK testGet.R..................... 113 tests OK testGet.R..................... 114 tests OK testGet.R..................... 115 tests OK testGet.R..................... 116 tests OK testGet.R..................... 117 tests OK testGet.R..................... 118 tests OK testGet.R..................... 119 tests OK testGet.R..................... 120 tests OK testGet.R..................... 121 tests OK testGet.R..................... 122 tests OK testGet.R..................... 123 tests OK testGet.R..................... 124 tests OK testGet.R..................... 125 tests OK testGet.R..................... 126 tests OK testGet.R..................... 127 tests OK testGet.R..................... 128 tests OK testGet.R..................... 129 tests OK testGet.R..................... 130 tests OK testGet.R..................... 131 tests OK testGet.R..................... 132 tests OK testGet.R..................... 133 tests OK testGet.R..................... 134 tests OK testGet.R..................... 135 tests OK testGet.R..................... 136 tests OK testGet.R..................... 137 tests OK testGet.R..................... 138 tests OK testGet.R..................... 139 tests OK testGet.R..................... 140 tests OK testGet.R..................... 141 tests OK testGet.R..................... 142 tests OK testGet.R..................... 143 tests OK testGet.R..................... 144 tests OK testGet.R..................... 145 tests OK testGet.R..................... 146 tests OK testGet.R..................... 147 tests OK testGet.R..................... 148 tests OK testGet.R..................... 149 tests OK testGet.R..................... 150 tests OK testGet.R..................... 150 tests OK testGet.R..................... 150 tests OK 16.5s testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 1 tests OK testGetNumeric.R.............. 2 tests OK testGetNumeric.R.............. 3 tests OK testGetNumeric.R.............. 4 tests OK testGetNumeric.R.............. 5 tests OK testGetNumeric.R.............. 6 tests OK testGetNumeric.R.............. 7 tests OK testGetNumeric.R.............. 8 tests OK testGetNumeric.R.............. 9 tests OK testGetNumeric.R.............. 10 tests OK testGetNumeric.R.............. 11 tests OK testGetNumeric.R.............. 12 tests OK testGetNumeric.R.............. 13 tests OK testGetNumeric.R.............. 14 tests OK testGetNumeric.R.............. 15 tests OK testGetNumeric.R.............. 16 tests OK testGetNumeric.R.............. 17 tests OK testGetNumeric.R.............. 18 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 20 tests OK testGetNumeric.R.............. 21 tests OK testGetNumeric.R.............. 22 tests OK testGetNumeric.R.............. 23 tests OK testGetNumeric.R.............. 24 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 26 tests OK testGetNumeric.R.............. 27 tests OK testGetNumeric.R.............. 28 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 30 tests OK testGetNumeric.R.............. 31 tests OK testGetNumeric.R.............. 32 tests OK testGetNumeric.R.............. 32 tests OK testGetNumeric.R.............. 32 tests OK 9.1s testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 1 tests OK testImport.R.................. 2 tests OK testImport.R.................. 3 tests OK testImport.R.................. 4 tests OK testImport.R.................. 5 tests OK testImport.R.................. 6 tests OK testImport.R.................. 7 tests OK testImport.R.................. 8 tests OK testImport.R.................. 9 tests OK testImport.R.................. 10 tests OK testImport.R.................. 11 tests OK testImport.R.................. 12 tests OK testImport.R.................. 13 tests OK testImport.R.................. 14 tests OK testImport.R.................. 15 tests OK testImport.R.................. 16 tests OK testImport.R.................. 17 tests OK testImport.R.................. 18 tests OK testImport.R.................. 19 tests OK testImport.R.................. 20 tests OK testImport.R.................. 20 tests OK testImport.R.................. 21 tests OK testImport.R.................. 22 tests OK testImport.R.................. 23 tests OK testImport.R.................. 24 tests OK testImport.R.................. 25 tests OK testImport.R.................. 26 tests OK testImport.R.................. 27 tests OK testImport.R.................. 28 tests OK testImport.R.................. 29 tests OK testImport.R.................. 30 tests OK testImport.R.................. 31 tests OK testImport.R.................. 32 tests OK testImport.R.................. 33 tests OK testImport.R.................. 34 tests OK testImport.R.................. 35 tests OK testImport.R.................. 36 tests OK testImport.R.................. 37 tests OK testImport.R.................. 38 tests OK testImport.R.................. 39 tests OK testImport.R.................. 39 tests OK testImport.R.................. 39 tests OK 12.2s testOverlaps.R................ 0 tests testOverlaps.R................ 0 tests testOverlaps.R................ 0 tests testOverlaps.R................ 1 tests OK testOverlaps.R................ 2 tests OK testOverlaps.R................ 3 tests OK testOverlaps.R................ 3 tests OK testOverlaps.R................ 4 tests OK 0.3s testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 1 tests OK testPiecemeal.R............... 2 tests OK testPiecemeal.R............... 3 tests OK testPiecemeal.R............... 4 tests OK testPiecemeal.R............... 5 tests OK testPiecemeal.R............... 5 tests OK testPiecemeal.R............... 6 tests OK testPiecemeal.R............... 7 tests OK testPiecemeal.R............... 8 tests OK testPiecemeal.R............... 9 tests OK 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testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 1 tests OK testSummary.R................. 2 tests OK testSummary.R................. 3 tests OK testSummary.R................. 4 tests OK 0.1s testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 1 tests OK testUpset.R................... 2 tests OK testUpset.R................... 2 tests OK 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testValidate.R................ 17 tests OK testValidate.R................ 18 tests OK testValidate.R................ 18 tests OK testValidate.R................ 18 tests OK testValidate.R................ 19 tests OK testValidate.R................ 19 tests OK testValidate.R................ 19 tests OK testValidate.R................ 20 tests OK testValidate.R................ 20 tests OK testValidate.R................ 20 tests OK testValidate.R................ 21 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 23 tests OK testValidate.R................ 23 tests OK testValidate.R................ 23 tests OK testValidate.R................ 24 tests OK testValidate.R................ 24 tests OK testValidate.R................ 24 tests OK testValidate.R................ 25 tests OK testValidate.R................ 25 tests OK testValidate.R................ 25 tests OK testValidate.R................ 26 tests OK 1.9s ----- FAILED[data]: testExport.R<31--32> call| expect_identical_xl(as.character(observed), specialDesc, info = "Export special character in description field") diff| < target diff| > current diff| @@ 1 / 1 @@  diff| < [1] "\316\262\342\200\220catenin and neural cell adhesion molecule (NCAM)" diff| > [1] "<80><90>catenin and neural cell adhesion\nmolecule (NCAM)" info| Export special character in description field Error: 1 out of 771 tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR See '/tmp/th798/18347080/R-release/949/OmicNavigator.Rcheck/00check.log' for details. [1] "2025-07-07 01:17:45 MST" [1] "2025-07-07 01:17:45 MST" Installing package into '/tmp/th798/18347080/R-release/949/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.99' ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mergelist.c -o mergelist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/18347080/R-release/949/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-07-07 01:18:16 MST" * using log directory '/tmp/th798/18347080/R-release/949/OmicNavigator.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'OmicNavigator/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'OmicNavigator' version '1.15.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'OmicNavigator' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'tinytest.R' ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > # Test files in inst/tinytest/ > if (requireNamespace("tinytest", quietly = TRUE)) { + suppressMessages(tinytest::test_package("OmicNavigator")) + } testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 0 tests testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 1 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 2 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 3 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 4 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 5 tests OK testAdd.R..................... 6 tests OK testAdd.R..................... 6 tests OK testAdd.R..................... 7 tests OK testAdd.R..................... 7 tests OK 2.9s testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 0 tests testApp.R..................... 1 tests OK testApp.R..................... 2 tests OK testApp.R..................... 3 tests OK testApp.R..................... 4 tests OK testApp.R..................... 5 tests OK testApp.R..................... 6 tests OK testApp.R..................... 7 tests OK testApp.R..................... 8 tests OK testApp.R..................... 9 tests OK testApp.R..................... 10 tests OK testApp.R..................... 11 tests OK testApp.R..................... 12 tests OK testApp.R..................... 13 tests OK testApp.R..................... 14 tests OK testApp.R..................... 15 tests OK testApp.R..................... 16 tests OK testApp.R..................... 16 tests OK testApp.R..................... 17 tests OK testApp.R..................... 17 tests OK testApp.R..................... 18 tests OK testApp.R..................... 18 tests OK testApp.R..................... 19 tests OK testApp.R..................... 20 tests OK testApp.R..................... 21 tests OK testApp.R..................... 22 tests OK testApp.R..................... 22 tests OK testApp.R..................... 22 tests OK testApp.R..................... 23 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 24 tests OK testApp.R..................... 25 tests OK testApp.R..................... 26 tests OK testApp.R..................... 27 tests OK testApp.R..................... 27 tests OK testApp.R..................... 28 tests OK testApp.R..................... 29 tests OK testApp.R..................... 30 tests OK testApp.R..................... 31 tests OK testApp.R..................... 31 tests OK testApp.R..................... 32 tests OK testApp.R..................... 33 tests OK testApp.R..................... 34 tests OK testApp.R..................... 35 tests OK testApp.R..................... 36 tests OK testApp.R..................... 37 tests OK testApp.R..................... 38 tests OK testApp.R..................... 41 tests OK testApp.R..................... 42 tests OK testApp.R..................... 43 tests OK testApp.R..................... 43 tests OK testApp.R..................... 44 tests OK testApp.R..................... 45 tests OK testApp.R..................... 46 tests OK testApp.R..................... 47 tests OK testApp.R..................... 47 tests OK testApp.R..................... 48 tests OK testApp.R..................... 49 tests OK testApp.R..................... 50 tests OK testApp.R..................... 51 tests OK testApp.R..................... 51 tests OK testApp.R..................... 52 tests OK testApp.R..................... 52 tests OK testApp.R..................... 53 tests OK testApp.R..................... 54 tests OK testApp.R..................... 55 tests OK testApp.R..................... 55 tests OK testApp.R..................... 56 tests OK testApp.R..................... 57 tests OK testApp.R..................... 58 tests OK testApp.R..................... 59 tests OK testApp.R..................... 60 tests OK testApp.R..................... 61 tests OK testApp.R..................... 62 tests OK testApp.R..................... 62 tests OK testApp.R..................... 63 tests OK testApp.R..................... 63 tests OK testApp.R..................... 63 tests OK 7.5s testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 0 tests testBugs.R.................... 1 tests OK testBugs.R.................... 1 tests OK testBugs.R.................... 1 tests OK testBugs.R.................... 2 tests OK testBugs.R.................... 2 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 3 tests OK testBugs.R.................... 4 tests OK testBugs.R.................... 5 tests OK testBugs.R.................... 6 tests OK testBugs.R.................... 7 tests OK testBugs.R.................... 7 tests OK testBugs.R.................... 8 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 17 tests OK testBugs.R.................... 18 tests OK 0.3s testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 0 tests testCheck.R................... 1 tests OK testCheck.R................... 2 tests OK testCheck.R................... 3 tests OK testCheck.R................... 4 tests OK testCheck.R................... 5 tests OK testCheck.R................... 6 tests OK testCheck.R................... 6 tests OK testCheck.R................... 16 tests OK testCheck.R................... 17 tests OK testCheck.R................... 18 tests OK testCheck.R................... 19 tests OK testCheck.R................... 20 tests OK testCheck.R................... 21 tests OK testCheck.R................... 22 tests OK testCheck.R................... 23 tests OK testCheck.R................... 24 tests OK testCheck.R................... 25 tests OK testCheck.R................... 26 tests OK testCheck.R................... 27 tests OK testCheck.R................... 28 tests OK testCheck.R................... 29 tests OK testCheck.R................... 30 tests OK testCheck.R................... 31 tests OK testCheck.R................... 32 tests OK testCheck.R................... 33 tests OK testCheck.R................... 34 tests OK testCheck.R................... 35 tests OK testCheck.R................... 36 tests OK testCheck.R................... 37 tests OK testCheck.R................... 38 tests OK testCheck.R................... 39 tests OK testCheck.R................... 40 tests OK testCheck.R................... 41 tests OK testCheck.R................... 42 tests OK testCheck.R................... 43 tests OK testCheck.R................... 44 tests OK testCheck.R................... 45 tests OK testCheck.R................... 46 tests OK testCheck.R................... 47 tests OK testCheck.R................... 48 tests OK testCheck.R................... 49 tests OK testCheck.R................... 50 tests OK testCheck.R................... 50 tests OK testCheck.R................... 51 tests OK testCheck.R................... 51 tests OK testCheck.R................... 52 tests OK testCheck.R................... 53 tests OK testCheck.R................... 53 tests OK testCheck.R................... 54 tests OK testCheck.R................... 55 tests OK testCheck.R................... 56 tests OK testCheck.R................... 57 tests OK testCheck.R................... 58 tests OK testCheck.R................... 59 tests OK testCheck.R................... 59 tests OK testCheck.R................... 69 tests OK testCheck.R................... 69 tests OK testCheck.R................... 70 tests OK testCheck.R................... 71 tests OK testCheck.R................... 71 tests OK testCheck.R................... 72 tests OK testCheck.R................... 73 tests OK testCheck.R................... 74 tests OK testCheck.R................... 75 tests OK testCheck.R................... 76 tests OK testCheck.R................... 77 tests OK testCheck.R................... 77 tests OK testCheck.R................... 87 tests OK testCheck.R................... 87 tests OK testCheck.R................... 88 tests OK testCheck.R................... 89 tests OK testCheck.R................... 90 tests OK testCheck.R................... 91 tests OK testCheck.R................... 92 tests OK testCheck.R................... 93 tests OK testCheck.R................... 94 tests OK testCheck.R................... 94 tests OK testCheck.R................... 95 tests OK testCheck.R................... 95 tests OK testCheck.R................... 96 tests OK testCheck.R................... 97 tests OK testCheck.R................... 97 tests OK testCheck.R................... 98 tests OK testCheck.R................... 98 tests OK testCheck.R................... 98 tests OK testCheck.R................... 99 tests OK testCheck.R................... 99 tests OK testCheck.R................... 99 tests OK testCheck.R................... 100 tests OK testCheck.R................... 101 tests OK testCheck.R................... 102 tests OK testCheck.R................... 103 tests OK testCheck.R................... 103 tests OK testCheck.R................... 103 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 104 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 105 tests OK testCheck.R................... 106 tests OK testCheck.R................... 106 tests OK testCheck.R................... 107 tests OK testCheck.R................... 108 tests OK testCheck.R................... 109 tests OK testCheck.R................... 109 tests OK testCheck.R................... 109 tests OK testCheck.R................... 110 tests OK testCheck.R................... 110 tests OK testCheck.R................... 110 tests OK testCheck.R................... 111 tests OK testCheck.R................... 111 tests OK testCheck.R................... 112 tests OK testCheck.R................... 112 tests OK testCheck.R................... 112 tests OK testCheck.R................... 113 tests OK testCheck.R................... 113 tests OK testCheck.R................... 113 tests OK testCheck.R................... 114 tests OK testCheck.R................... 114 tests OK testCheck.R................... 114 tests OK testCheck.R................... 115 tests OK testCheck.R................... 115 tests OK testCheck.R................... 115 tests OK testCheck.R................... 116 tests OK testCheck.R................... 116 tests OK testCheck.R................... 116 tests OK testCheck.R................... 117 tests OK testCheck.R................... 117 tests OK testCheck.R................... 117 tests OK testCheck.R................... 118 tests OK testCheck.R................... 118 tests OK testCheck.R................... 118 tests OK testCheck.R................... 119 tests OK testCheck.R................... 119 tests OK testCheck.R................... 119 tests OK testCheck.R................... 120 tests OK testCheck.R................... 121 tests OK testCheck.R................... 122 tests OK testCheck.R................... 123 tests OK testCheck.R................... 124 tests OK testCheck.R................... 125 tests OK testCheck.R................... 126 tests OK testCheck.R................... 127 tests OK testCheck.R................... 128 tests OK 0.2s testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 0 tests testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 1 tests OK testCombine.R................. 2 tests OK testCombine.R................. 2 tests OK testCombine.R................. 3 tests OK testCombine.R................. 3 tests OK testCombine.R................. 4 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 5 tests OK testCombine.R................. 6 tests OK testCombine.R................. 6 tests OK testCombine.R................. 7 tests OK testCombine.R................. 8 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 9 tests OK testCombine.R................. 10 tests OK testCombine.R................. 11 tests OK testCombine.R................. 12 tests OK testCombine.R................. 13 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 14 tests OK testCombine.R................. 15 tests OK testCombine.R................. 16 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 17 tests OK testCombine.R................. 18 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 20 tests OK 4.5s testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 0 tests testExport.R.................. 1 tests 1 fails testExport.R.................. 1 tests 1 fails testExport.R.................. 1 tests 1 fails testExport.R.................. 2 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 3 tests 1 fails testExport.R.................. 4 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 5 tests 1 fails testExport.R.................. 6 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 7 tests 1 fails testExport.R.................. 8 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 9 tests 1 fails testExport.R.................. 10 tests 1 fails testExport.R.................. 11 tests 1 fails testExport.R.................. 12 tests 1 fails testExport.R.................. 13 tests 1 fails testExport.R.................. 14 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 15 tests 1 fails testExport.R.................. 16 tests 1 fails testExport.R.................. 17 tests 1 fails testExport.R.................. 18 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 19 tests 1 fails testExport.R.................. 20 tests 1 fails testExport.R.................. 21 tests 1 fails testExport.R.................. 22 tests 1 fails testExport.R.................. 23 tests 1 fails testExport.R.................. 24 tests 1 fails testExport.R.................. 25 tests 1 fails testExport.R.................. 25 tests 1 fails 13.1s testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 1 tests OK testExtraMetadata.R........... 1 tests OK testExtraMetadata.R........... 2 tests OK testExtraMetadata.R........... 3 tests OK testExtraMetadata.R........... 4 tests OK testExtraMetadata.R........... 5 tests OK testExtraMetadata.R........... 6 tests OK testExtraMetadata.R........... 7 tests OK testExtraMetadata.R........... 7 tests OK testExtraMetadata.R........... 8 tests OK testExtraMetadata.R........... 9 tests OK testExtraMetadata.R........... 10 tests OK testExtraMetadata.R........... 11 tests OK testExtraMetadata.R........... 12 tests OK testExtraMetadata.R........... 12 tests OK testExtraMetadata.R........... 13 tests OK testExtraMetadata.R........... 14 tests OK testExtraMetadata.R........... 15 tests OK testExtraMetadata.R........... 16 tests OK testExtraMetadata.R........... 16 tests OK testExtraMetadata.R........... 17 tests OK testExtraMetadata.R........... 18 tests OK testExtraMetadata.R........... 18 tests OK testExtraMetadata.R........... 18 tests OK 4.1s testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 0 tests testGet.R..................... 1 tests OK testGet.R..................... 2 tests OK testGet.R..................... 3 tests OK testGet.R..................... 4 tests OK testGet.R..................... 5 tests OK testGet.R..................... 6 tests OK testGet.R..................... 7 tests OK testGet.R..................... 8 tests OK testGet.R..................... 9 tests OK testGet.R..................... 10 tests OK testGet.R..................... 11 tests OK testGet.R..................... 12 tests OK testGet.R..................... 13 tests OK testGet.R..................... 14 tests OK testGet.R..................... 15 tests OK testGet.R..................... 16 tests OK testGet.R..................... 17 tests OK testGet.R..................... 18 tests OK testGet.R..................... 19 tests OK testGet.R..................... 20 tests OK testGet.R..................... 21 tests OK testGet.R..................... 22 tests OK testGet.R..................... 23 tests OK testGet.R..................... 24 tests OK testGet.R..................... 25 tests OK testGet.R..................... 26 tests OK testGet.R..................... 27 tests OK testGet.R..................... 28 tests OK testGet.R..................... 29 tests OK testGet.R..................... 30 tests OK testGet.R..................... 31 tests OK testGet.R..................... 32 tests OK testGet.R..................... 33 tests OK testGet.R..................... 34 tests OK testGet.R..................... 35 tests OK testGet.R..................... 36 tests OK testGet.R..................... 37 tests OK testGet.R..................... 38 tests OK testGet.R..................... 39 tests OK testGet.R..................... 40 tests OK testGet.R..................... 41 tests OK testGet.R..................... 42 tests OK testGet.R..................... 43 tests OK testGet.R..................... 44 tests OK testGet.R..................... 45 tests OK testGet.R..................... 46 tests OK testGet.R..................... 47 tests OK testGet.R..................... 48 tests OK testGet.R..................... 49 tests OK testGet.R..................... 50 tests OK testGet.R..................... 51 tests OK testGet.R..................... 52 tests OK testGet.R..................... 53 tests OK testGet.R..................... 54 tests OK testGet.R..................... 55 tests OK testGet.R..................... 56 tests OK testGet.R..................... 57 tests OK testGet.R..................... 58 tests OK testGet.R..................... 59 tests OK testGet.R..................... 60 tests OK testGet.R..................... 61 tests OK testGet.R..................... 62 tests OK testGet.R..................... 63 tests OK testGet.R..................... 64 tests OK testGet.R..................... 65 tests OK testGet.R..................... 66 tests OK testGet.R..................... 67 tests OK testGet.R..................... 68 tests OK testGet.R..................... 69 tests OK testGet.R..................... 70 tests OK testGet.R..................... 71 tests OK testGet.R..................... 72 tests OK testGet.R..................... 73 tests OK testGet.R..................... 74 tests OK testGet.R..................... 75 tests OK testGet.R..................... 76 tests OK testGet.R..................... 77 tests OK testGet.R..................... 78 tests OK testGet.R..................... 79 tests OK testGet.R..................... 80 tests OK testGet.R..................... 81 tests OK testGet.R..................... 82 tests OK testGet.R..................... 83 tests OK testGet.R..................... 84 tests OK testGet.R..................... 85 tests OK testGet.R..................... 86 tests OK testGet.R..................... 87 tests OK testGet.R..................... 88 tests OK testGet.R..................... 89 tests OK testGet.R..................... 90 tests OK testGet.R..................... 91 tests OK testGet.R..................... 92 tests OK testGet.R..................... 93 tests OK testGet.R..................... 94 tests OK testGet.R..................... 95 tests OK testGet.R..................... 96 tests OK testGet.R..................... 97 tests OK testGet.R..................... 98 tests OK testGet.R..................... 99 tests OK testGet.R..................... 100 tests OK testGet.R..................... 101 tests OK testGet.R..................... 102 tests OK testGet.R..................... 103 tests OK testGet.R..................... 104 tests OK testGet.R..................... 105 tests OK testGet.R..................... 106 tests OK testGet.R..................... 107 tests OK testGet.R..................... 108 tests OK testGet.R..................... 109 tests OK testGet.R..................... 110 tests OK testGet.R..................... 111 tests OK testGet.R..................... 112 tests OK testGet.R..................... 113 tests OK testGet.R..................... 114 tests OK testGet.R..................... 115 tests OK testGet.R..................... 116 tests OK testGet.R..................... 117 tests OK testGet.R..................... 118 tests OK testGet.R..................... 119 tests OK testGet.R..................... 120 tests OK testGet.R..................... 121 tests OK testGet.R..................... 122 tests OK testGet.R..................... 123 tests OK testGet.R..................... 124 tests OK testGet.R..................... 125 tests OK testGet.R..................... 126 tests OK testGet.R..................... 127 tests OK testGet.R..................... 128 tests OK testGet.R..................... 129 tests OK testGet.R..................... 130 tests OK testGet.R..................... 131 tests OK testGet.R..................... 132 tests OK testGet.R..................... 133 tests OK testGet.R..................... 134 tests OK testGet.R..................... 135 tests OK testGet.R..................... 136 tests OK testGet.R..................... 137 tests OK testGet.R..................... 138 tests OK testGet.R..................... 139 tests OK testGet.R..................... 140 tests OK testGet.R..................... 141 tests OK testGet.R..................... 142 tests OK testGet.R..................... 143 tests OK testGet.R..................... 144 tests OK testGet.R..................... 145 tests OK testGet.R..................... 146 tests OK testGet.R..................... 147 tests OK testGet.R..................... 148 tests OK testGet.R..................... 149 tests OK testGet.R..................... 150 tests OK testGet.R..................... 150 tests OK testGet.R..................... 150 tests OK 17.9s testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 1 tests OK testGetNumeric.R.............. 2 tests OK testGetNumeric.R.............. 3 tests OK testGetNumeric.R.............. 4 tests OK testGetNumeric.R.............. 5 tests OK testGetNumeric.R.............. 6 tests OK testGetNumeric.R.............. 7 tests OK testGetNumeric.R.............. 8 tests OK testGetNumeric.R.............. 9 tests OK testGetNumeric.R.............. 10 tests OK testGetNumeric.R.............. 11 tests OK testGetNumeric.R.............. 12 tests OK testGetNumeric.R.............. 13 tests OK testGetNumeric.R.............. 14 tests OK testGetNumeric.R.............. 15 tests OK testGetNumeric.R.............. 16 tests OK testGetNumeric.R.............. 17 tests OK testGetNumeric.R.............. 18 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 19 tests OK testGetNumeric.R.............. 20 tests OK testGetNumeric.R.............. 21 tests OK testGetNumeric.R.............. 22 tests OK testGetNumeric.R.............. 23 tests OK testGetNumeric.R.............. 24 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 25 tests OK testGetNumeric.R.............. 26 tests OK testGetNumeric.R.............. 27 tests OK testGetNumeric.R.............. 28 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 29 tests OK testGetNumeric.R.............. 30 tests OK testGetNumeric.R.............. 31 tests OK testGetNumeric.R.............. 32 tests OK testGetNumeric.R.............. 32 tests OK testGetNumeric.R.............. 32 tests OK 9.5s testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 0 tests testImport.R.................. 1 tests OK testImport.R.................. 2 tests OK testImport.R.................. 3 tests OK testImport.R.................. 4 tests OK testImport.R.................. 5 tests OK testImport.R.................. 6 tests OK testImport.R.................. 7 tests OK testImport.R.................. 8 tests OK testImport.R.................. 9 tests OK testImport.R.................. 10 tests OK testImport.R.................. 11 tests OK testImport.R.................. 12 tests OK testImport.R.................. 13 tests OK testImport.R.................. 14 tests OK testImport.R.................. 15 tests OK testImport.R.................. 16 tests OK testImport.R.................. 17 tests OK testImport.R.................. 18 tests OK testImport.R.................. 19 tests OK testImport.R.................. 20 tests OK testImport.R.................. 20 tests OK testImport.R.................. 21 tests OK testImport.R.................. 22 tests OK testImport.R.................. 23 tests OK testImport.R.................. 24 tests OK testImport.R.................. 25 tests OK testImport.R.................. 26 tests OK testImport.R.................. 27 tests OK testImport.R.................. 28 tests OK testImport.R.................. 29 tests OK testImport.R.................. 30 tests OK testImport.R.................. 31 tests OK testImport.R.................. 32 tests OK testImport.R.................. 33 tests OK testImport.R.................. 34 tests OK testImport.R.................. 35 tests OK testImport.R.................. 36 tests OK testImport.R.................. 37 tests OK testImport.R.................. 38 tests OK testImport.R.................. 39 tests OK testImport.R.................. 39 tests OK testImport.R.................. 39 tests OK 11.7s testOverlaps.R................ 0 tests testOverlaps.R................ 0 tests testOverlaps.R................ 0 tests testOverlaps.R................ 1 tests OK testOverlaps.R................ 2 tests OK testOverlaps.R................ 3 tests OK testOverlaps.R................ 3 tests OK testOverlaps.R................ 4 tests OK 0.3s testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 0 tests testPiecemeal.R............... 1 tests OK testPiecemeal.R............... 2 tests OK testPiecemeal.R............... 3 tests OK testPiecemeal.R............... 4 tests OK testPiecemeal.R............... 5 tests OK testPiecemeal.R............... 5 tests OK testPiecemeal.R............... 6 tests OK testPiecemeal.R............... 7 tests OK testPiecemeal.R............... 8 tests OK testPiecemeal.R............... 9 tests OK testPiecemeal.R............... 10 tests OK testPiecemeal.R............... 11 tests OK testPiecemeal.R............... 11 tests OK testPiecemeal.R............... 11 tests OK testPiecemeal.R............... 12 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 13 tests OK testPiecemeal.R............... 14 tests OK testPiecemeal.R............... 15 tests OK testPiecemeal.R............... 16 tests OK testPiecemeal.R............... 17 tests OK testPiecemeal.R............... 18 tests OK testPiecemeal.R............... 18 tests OK testPiecemeal.R............... 19 tests OK testPiecemeal.R............... 20 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK testPiecemeal.R............... 21 tests OK 4.3s testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 0 tests testPlot.R.................... 1 tests OK testPlot.R.................... 1 tests OK testPlot.R.................... 1 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 2 tests OK testPlot.R.................... 3 tests OK testPlot.R.................... 3 tests OK testPlot.R.................... 4 tests OK testPlot.R.................... 4 tests OK testPlot.R.................... 4 tests OK testPlot.R.................... 5 tests OK testPlot.R.................... 6 tests OK testPlot.R.................... 7 tests OK testPlot.R.................... 8 tests OK testPlot.R.................... 9 tests OK testPlot.R.................... 10 tests OK testPlot.R.................... 11 tests OK testPlot.R.................... 12 tests OK testPlot.R.................... 13 tests OK testPlot.R.................... 13 tests OK testPlot.R.................... 14 tests OK testPlot.R.................... 15 tests OK testPlot.R.................... 16 tests OK testPlot.R.................... 17 tests OK testPlot.R.................... 18 tests OK testPlot.R.................... 19 tests OK testPlot.R.................... 20 tests OK testPlot.R.................... 21 tests OK testPlot.R.................... 22 tests OK testPlot.R.................... 22 tests OK testPlot.R.................... 23 tests OK testPlot.R.................... 23 tests OK testPlot.R.................... 24 tests OK testPlot.R.................... 25 tests OK testPlot.R.................... 26 tests OK testPlot.R.................... 27 tests OK testPlot.R.................... 27 tests OK testPlot.R.................... 27 tests OK testPlot.R.................... 28 tests OK testPlot.R.................... 29 tests OK testPlot.R.................... 30 tests OK testPlot.R.................... 31 tests OK testPlot.R.................... 32 tests OK testPlot.R.................... 33 tests OK testPlot.R.................... 34 tests OK testPlot.R.................... 35 tests OK testPlot.R.................... 36 tests OK testPlot.R.................... 37 tests OK testPlot.R.................... 38 tests OK testPlot.R.................... 39 tests OK testPlot.R.................... 40 tests OK testPlot.R.................... 41 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 42 tests OK testPlot.R.................... 43 tests OK testPlot.R.................... 44 tests OK testPlot.R.................... 45 tests OK testPlot.R.................... 46 tests OK testPlot.R.................... 47 tests OK testPlot.R.................... 48 tests OK testPlot.R.................... 49 tests OK testPlot.R.................... 50 tests OK testPlot.R.................... 50 tests OK testPlot.R.................... 51 tests OK testPlot.R.................... 52 tests OK testPlot.R.................... 53 tests OK testPlot.R.................... 54 tests OK testPlot.R.................... 55 tests OK testPlot.R.................... 56 tests OK testPlot.R.................... 57 tests OK testPlot.R.................... 58 tests OK testPlot.R.................... 58 tests OK testPlot.R.................... 59 tests OK testPlot.R.................... 60 tests OK testPlot.R.................... 61 tests OK testPlot.R.................... 62 tests OK testPlot.R.................... 63 tests OK testPlot.R.................... 64 tests OK testPlot.R.................... 65 tests OK testPlot.R.................... 65 tests OK testPlot.R.................... 66 tests OK testPlot.R.................... 67 tests OK testPlot.R.................... 68 tests OK testPlot.R.................... 69 tests OK testPlot.R.................... 70 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 71 tests OK testPlot.R.................... 72 tests OK testPlot.R.................... 73 tests OK testPlot.R.................... 74 tests OK testPlot.R.................... 75 tests OK testPlot.R.................... 76 tests OK testPlot.R.................... 77 tests OK testPlot.R.................... 78 tests OK testPlot.R.................... 79 tests OK testPlot.R.................... 80 tests OK testPlot.R.................... 81 tests OK testPlot.R.................... 82 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 83 tests OK testPlot.R.................... 84 tests OK testPlot.R.................... 85 tests OK testPlot.R.................... 86 tests OK testPlot.R.................... 87 tests OK testPlot.R.................... 88 tests OK testPlot.R.................... 89 tests OK testPlot.R.................... 90 tests OK testPlot.R.................... 91 tests OK testPlot.R.................... 92 tests OK testPlot.R.................... 93 tests OK testPlot.R.................... 94 tests OK testPlot.R.................... 95 tests OK testPlot.R.................... 95 tests OK testPlot.R.................... 95 tests OK testPlot.R.................... 96 tests OK testPlot.R.................... 97 tests OK testPlot.R.................... 98 tests OK testPlot.R.................... 99 tests OK testPlot.R.................... 100 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 101 tests OK testPlot.R.................... 102 tests OK testPlot.R.................... 103 tests OK testPlot.R.................... 104 tests OK testPlot.R.................... 104 tests OK testPlot.R.................... 104 tests OK testPlot.R.................... 104 tests OK testPlot.R.................... 105 tests OK testPlot.R.................... 106 tests OK testPlot.R.................... 106 tests OK testPlot.R.................... 106 tests OK testPlot.R.................... 107 tests OK testPlot.R.................... 108 tests OK testPlot.R.................... 109 tests OK testPlot.R.................... 110 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 111 tests OK testPlot.R.................... 112 tests OK testPlot.R.................... 113 tests OK testPlot.R.................... 114 tests OK testPlot.R.................... 115 tests OK testPlot.R.................... 116 tests OK testPlot.R.................... 117 tests OK testPlot.R.................... 118 tests OK testPlot.R.................... 119 tests OK testPlot.R.................... 120 tests OK testPlot.R.................... 121 tests OK testPlot.R.................... 121 tests OK testPlot.R.................... 122 tests OK testPlot.R.................... 123 tests OK testPlot.R.................... 124 tests OK testPlot.R.................... 125 tests OK testPlot.R.................... 126 tests OK testPlot.R.................... 127 tests OK testPlot.R.................... 128 tests OK testPlot.R.................... 129 tests OK testPlot.R.................... 130 tests OK testPlot.R.................... 131 tests OK testPlot.R.................... 131 tests OK testPlot.R.................... 132 tests OK testPlot.R.................... 133 tests OK testPlot.R.................... 134 tests OK testPlot.R.................... 135 tests OK testPlot.R.................... 136 tests OK testPlot.R.................... 137 tests OK testPlot.R.................... 138 tests OK testPlot.R.................... 139 tests OK testPlot.R.................... 140 tests OK testPlot.R.................... 140 tests OK testPlot.R.................... 140 tests OK testPlot.R.................... 141 tests OK testPlot.R.................... 141 tests OK testPlot.R.................... 141 tests OK testPlot.R.................... 142 tests OK testPlot.R.................... 142 tests OK testPlot.R.................... 143 tests OK testPlot.R.................... 143 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 144 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK 9.5s testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 0 tests testPrint.R................... 1 tests OK testPrint.R................... 2 tests OK testPrint.R................... 3 tests OK 92ms testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 0 tests testSummary.R................. 1 tests OK testSummary.R................. 2 tests OK testSummary.R................. 3 tests OK testSummary.R................. 4 tests OK 0.1s testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 0 tests testUpset.R................... 1 tests OK testUpset.R................... 2 tests OK testUpset.R................... 2 tests OK testUpset.R................... 3 tests OK testUpset.R................... 4 tests OK testUpset.R................... 4 tests OK testUpset.R................... 5 tests OK testUpset.R................... 6 tests OK testUpset.R................... 7 tests OK testUpset.R................... 7 tests OK testUpset.R................... 8 tests OK testUpset.R................... 9 tests OK testUpset.R................... 9 tests OK testUpset.R................... 9 tests OK testUpset.R................... 10 tests OK testUpset.R................... 10 tests OK testUpset.R................... 11 tests OK testUpset.R................... 12 tests OK testUpset.R................... 13 tests OK testUpset.R................... 13 tests OK testUpset.R................... 13 tests OK testUpset.R................... 14 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 15 tests OK testUpset.R................... 16 tests OK testUpset.R................... 17 tests OK testUpset.R................... 18 tests OK testUpset.R................... 18 tests OK testUpset.R................... 18 tests OK testUpset.R................... 19 tests OK testUpset.R................... 20 tests OK testUpset.R................... 21 tests OK testUpset.R................... 21 tests OK testUpset.R................... 21 tests OK testUpset.R................... 21 tests OK testUpset.R................... 22 tests OK testUpset.R................... 23 tests OK testUpset.R................... 23 tests OK testUpset.R................... 24 tests OK testUpset.R................... 25 tests OK testUpset.R................... 25 tests OK testUpset.R................... 26 tests OK testUpset.R................... 26 tests OK testUpset.R................... 26 tests OK testUpset.R................... 26 tests OK testUpset.R................... 27 tests OK testUpset.R................... 27 tests OK testUpset.R................... 27 tests OK testUpset.R................... 27 tests OK testUpset.R................... 28 tests OK testUpset.R................... 28 tests OK testUpset.R................... 28 tests OK testUpset.R................... 28 tests OK testUpset.R................... 29 tests OK testUpset.R................... 29 tests OK testUpset.R................... 29 tests OK testUpset.R................... 29 tests OK testUpset.R................... 30 tests OK testUpset.R................... 30 tests OK testUpset.R................... 31 tests OK testUpset.R................... 33 tests OK testUpset.R................... 33 tests OK testUpset.R................... 34 tests OK testUpset.R................... 38 tests OK testUpset.R................... 38 tests OK testUpset.R................... 39 tests OK testUpset.R................... 43 tests OK testUpset.R................... 44 tests OK testUpset.R................... 45 tests OK testUpset.R................... 45 tests OK testUpset.R................... 45 tests OK testUpset.R................... 45 tests OK testUpset.R................... 46 tests OK testUpset.R................... 46 tests OK testUpset.R................... 47 tests OK testUpset.R................... 47 tests OK testUpset.R................... 48 tests OK testUpset.R................... 49 tests OK testUpset.R................... 50 tests OK testUpset.R................... 50 tests OK testUpset.R................... 50 tests OK testUpset.R................... 51 tests OK testUpset.R................... 52 tests OK testUpset.R................... 53 tests OK testUpset.R................... 54 tests OK testUpset.R................... 54 tests OK testUpset.R................... 54 tests OK testUpset.R................... 54 tests OK testUpset.R................... 55 tests OK testUpset.R................... 55 tests OK testUpset.R................... 55 tests OK testUpset.R................... 56 tests OK testUpset.R................... 57 tests OK testUpset.R................... 58 tests OK testUpset.R................... 58 tests OK testUpset.R................... 58 tests OK testUpset.R................... 59 tests OK testUpset.R................... 60 tests OK testUpset.R................... 61 tests OK testUpset.R................... 61 tests OK testUpset.R................... 61 tests OK testUpset.R................... 61 tests OK testUpset.R................... 61 tests OK testUpset.R................... 62 tests OK testUpset.R................... 62 tests OK testUpset.R................... 62 tests OK testUpset.R................... 63 tests OK testUpset.R................... 63 tests OK testUpset.R................... 64 tests OK testUpset.R................... 65 tests OK testUpset.R................... 65 tests OK testUpset.R................... 65 tests OK 18.8s testUtility.R................. 0 tests testUtility.R................. 0 tests testUtility.R................. 0 tests testUtility.R................. 0 tests testUtility.R................. 0 tests testUtility.R................. 0 tests testUtility.R................. 1 tests OK testUtility.R................. 1 tests OK testUtility.R................. 1 tests OK testUtility.R................. 1 tests OK testUtility.R................. 2 tests OK testUtility.R................. 2 tests OK testUtility.R................. 3 tests OK 0.2s testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 0 tests testValidate.R................ 1 tests OK testValidate.R................ 2 tests OK testValidate.R................ 3 tests OK testValidate.R................ 3 tests OK testValidate.R................ 3 tests OK testValidate.R................ 4 tests OK testValidate.R................ 4 tests OK testValidate.R................ 4 tests OK testValidate.R................ 5 tests OK testValidate.R................ 5 tests OK testValidate.R................ 5 tests OK testValidate.R................ 6 tests OK testValidate.R................ 6 tests OK testValidate.R................ 6 tests OK testValidate.R................ 6 tests OK testValidate.R................ 7 tests OK testValidate.R................ 7 tests OK testValidate.R................ 7 tests OK testValidate.R................ 8 tests OK testValidate.R................ 9 tests OK testValidate.R................ 10 tests OK testValidate.R................ 10 tests OK testValidate.R................ 10 tests OK testValidate.R................ 11 tests OK testValidate.R................ 11 tests OK testValidate.R................ 11 tests OK testValidate.R................ 12 tests OK testValidate.R................ 12 tests OK testValidate.R................ 12 tests OK testValidate.R................ 13 tests OK testValidate.R................ 13 tests OK testValidate.R................ 13 tests OK testValidate.R................ 14 tests OK testValidate.R................ 14 tests OK testValidate.R................ 14 tests OK testValidate.R................ 14 tests OK testValidate.R................ 15 tests OK testValidate.R................ 15 tests OK testValidate.R................ 15 tests OK testValidate.R................ 16 tests OK testValidate.R................ 17 tests OK testValidate.R................ 17 tests OK testValidate.R................ 17 tests OK testValidate.R................ 17 tests OK testValidate.R................ 18 tests OK testValidate.R................ 18 tests OK testValidate.R................ 18 tests OK testValidate.R................ 19 tests OK testValidate.R................ 19 tests OK testValidate.R................ 19 tests OK testValidate.R................ 20 tests OK testValidate.R................ 20 tests OK testValidate.R................ 20 tests OK testValidate.R................ 21 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 22 tests OK testValidate.R................ 23 tests OK testValidate.R................ 23 tests OK testValidate.R................ 23 tests OK testValidate.R................ 24 tests OK testValidate.R................ 24 tests OK testValidate.R................ 24 tests OK testValidate.R................ 25 tests OK testValidate.R................ 25 tests OK testValidate.R................ 25 tests OK testValidate.R................ 26 tests OK 1.8s ----- FAILED[data]: testExport.R<31--32> call| expect_identical_xl(as.character(observed), specialDesc, info = "Export special character in description field") diff| < target diff| > current diff| @@ 1 / 1 @@  diff| < [1] "\316\262\342\200\220catenin and neural cell adhesion molecule (NCAM)" diff| > [1] "<80><90>catenin and neural cell adhesion\nmolecule (NCAM)" info| Export special character in description field Error: 1 out of 771 tests failed Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR See '/tmp/th798/18347080/R-release/949/OmicNavigator.Rcheck/00check.log' for details. [1] "2025-07-07 01:21:36 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) --- R_version_4.5.1_2025-06-13/release_1.17.6.Rcheck/00check.log 2025-07-07 01:17:45.978289466 -0700 +++ R_version_4.5.1_2025-06-13/master_1.17.99.35544d34ce779599cb2ed8900da2ffbac0ffbf29.Rcheck/00check.log 2025-07-07 01:21:36.498506948 -0700 @@ -142,7 +142,7 @@ testAdd.R..................... 6 tests OK testAdd.R..................... 6 tests OK testAdd.R..................... 7 tests OK - testAdd.R..................... 7 tests OK 3.0s + testAdd.R..................... 7 tests OK 2.9s testApp.R..................... 0 tests testApp.R..................... 0 tests @@ -489,7 +489,7 @@ testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK testCombine.R................. 19 tests OK - testCombine.R................. 20 tests OK 4.4s + testCombine.R................. 20 tests OK 4.5s testExport.R.................. 0 tests testExport.R.................. 0 tests @@ -556,7 +556,7 @@ testExport.R.................. 23 tests 1 fails testExport.R.................. 24 tests 1 fails testExport.R.................. 25 tests 1 fails - testExport.R.................. 25 tests 1 fails 10.9s + testExport.R.................. 25 tests 1 fails 13.1s testExtraMetadata.R........... 0 tests testExtraMetadata.R........... 0 tests @@ -591,7 +591,7 @@ testExtraMetadata.R........... 17 tests OK testExtraMetadata.R........... 18 tests OK testExtraMetadata.R........... 18 tests OK - testExtraMetadata.R........... 18 tests OK 3.2s + testExtraMetadata.R........... 18 tests OK 4.1s testGet.R..................... 0 tests testGet.R..................... 0 tests @@ -760,7 +760,7 @@ testGet.R..................... 149 tests OK testGet.R..................... 150 tests OK testGet.R..................... 150 tests OK - testGet.R..................... 150 tests OK 16.5s + testGet.R..................... 150 tests OK 17.9s testGetNumeric.R.............. 0 tests testGetNumeric.R.............. 0 tests @@ -818,7 +818,7 @@ testGetNumeric.R.............. 31 tests OK testGetNumeric.R.............. 32 tests OK testGetNumeric.R.............. 32 tests OK - testGetNumeric.R.............. 32 tests OK 9.1s + testGetNumeric.R.............. 32 tests OK 9.5s testImport.R.................. 0 tests testImport.R.................. 0 tests @@ -879,7 +879,7 @@ testImport.R.................. 38 tests OK testImport.R.................. 39 tests OK testImport.R.................. 39 tests OK - testImport.R.................. 39 tests OK 12.2s + testImport.R.................. 39 tests OK 11.7s testOverlaps.R................ 0 tests testOverlaps.R................ 0 tests @@ -1177,7 +1177,7 @@ testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK testPlot.R.................... 145 tests OK - testPlot.R.................... 145 tests OK 9.3s + testPlot.R.................... 145 tests OK 9.5s testPrint.R................... 0 tests testPrint.R................... 0 tests @@ -1187,7 +1187,7 @@ testPrint.R................... 0 tests testPrint.R................... 1 tests OK testPrint.R................... 2 tests OK - testPrint.R................... 3 tests OK 91ms + testPrint.R................... 3 tests OK 92ms testSummary.R................. 0 tests testSummary.R................. 0 tests @@ -1340,7 +1340,7 @@ testUpset.R................... 64 tests OK testUpset.R................... 65 tests OK testUpset.R................... 65 tests OK - testUpset.R................... 65 tests OK 18.7s + testUpset.R................... 65 tests OK 18.8s testUtility.R................. 0 tests testUtility.R................. 0 tests @@ -1431,7 +1431,7 @@ testValidate.R................ 25 tests OK testValidate.R................ 25 tests OK testValidate.R................ 25 tests OK - testValidate.R................ 26 tests OK 1.9s + testValidate.R................ 26 tests OK 1.8s ----- FAILED[data]: testExport.R<31--32> call| expect_identical_xl(as.character(observed), specialDesc, info = "Export special character in description field") diff| < target > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: Empty data.table (0 rows and 3 cols): checking,master,release > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } >