Note: the module "R" cannot be unloaded because it was not loaded. WARNING: ignoring environment value of R_HOME R Under development (unstable) (2025-07-08 r88392) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-07-09/deps.csv", task.str = "358", release = "/scratch/th798/data.table-revdeps/2025-07-09/data.table_release_1.17.6.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-07-09/data.table_master_1.17.99.8b1e3f9bd6909257c545c000f5ff8d12580553b5.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/18389421/R-devel/358" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/18389421/R-devel/358/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "dtts" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/18389421/R-devel/358/library" [2] "/projects/genomic-ml/R/R-devel/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-07-09 00:56:43 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) also installing the dependency 'tinytest' trying URL 'http://cloud.r-project.org/src/contrib/tinytest_1.4.1.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/dtts_0.1.3.tar.gz' * installing *source* package 'tinytest' ... ** this is package 'tinytest' version '1.4.1' ** package 'tinytest' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytest) * installing *source* package 'dtts' ... ** this is package 'dtts' version '0.1.3' ** package 'dtts' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppCCTZ/include' -I'/projects/genomic-ml/R/R-devel/library/RcppDate/include' -I'/projects/genomic-ml/R/R-devel/library/nanotime/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppCCTZ/include' -I'/projects/genomic-ml/R/R-devel/library/RcppDate/include' -I'/projects/genomic-ml/R/R-devel/library/nanotime/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c align.cpp -o align.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o dtts.so RcppExports.o align.o installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-dtts/00new/dtts/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dtts) The downloaded source packages are in '/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 11.837 1.102 21.813 > print(Sys.time()) [1] "2025-07-09 00:57:05 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-07-09 00:57:05 MST" Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-07-09 00:57:27 MST" * using log directory '/tmp/th798/18389421/R-devel/358/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'tinytest.R' OK * checking PDF version of manual ... OK * DONE Status: OK [1] "2025-07-09 00:58:45 MST" [1] "2025-07-09 00:58:45 MST" Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.99' ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mergelist.c -o mergelist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-07-09 00:59:09 MST" * using log directory '/tmp/th798/18389421/R-devel/358/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'tinytest.R' ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > pkg <- "dtts" > > if (requireNamespace("tinytest", quietly=TRUE)) { + tinytest::test_package(pkg) + } test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 11 tests OK test_dtts.R................... 12 tests OK test_dtts.R................... 13 tests OK test_dtts.R................... 14 tests OK test_dtts.R................... 15 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 23 tests OK test_dtts.R................... 24 tests OK test_dtts.R................... 25 tests OK test_dtts.R................... 26 tests OK test_dtts.R................... 27 tests OK test_dtts.R................... 28 tests OK test_dtts.R................... 29 tests OK test_dtts.R................... 30 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 54 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 66 tests 13 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 70 tests 17 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 74 tests 21 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails 0.9s ----- FAILED[attr]: test_dtts.R<333--333> call| expect_equal(align(dt1, t2, start = -as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<353--353> call| expect_equal(align(dt1, t2, end = as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<379--379> call| expect_equal(align(dt1, t2, start = -one_second_period, eopen = FALSE, call| --> func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<390--390> call| expect_equal(align(dt1, t2, start = -one_second_period, func = nrow, call| --> tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<401--401> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<467--467> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<479--479> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<495--495> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<550--550> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<561--561> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<572--572> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> sopen = FALSE, eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<582--582> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<584--584> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<585--585> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<587--587> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<597--597> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<599--599> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<600--600> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<602--602> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<612--612> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<614--614> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<615--615> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<617--617> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names Error: 23 out of 102 tests failed Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR See '/tmp/th798/18389421/R-devel/358/dtts.Rcheck/00check.log' for details. [1] "2025-07-09 01:00:20 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) --- R_Under_development_unstable_2025-07-08_r88392/release_1.17.6.Rcheck/00check.log 2025-07-09 00:58:45.437665510 -0700 +++ R_Under_development_unstable_2025-07-08_r88392/master_1.17.99.8b1e3f9bd6909257c545c000f5ff8d12580553b5.Rcheck/00check.log 2025-07-09 01:00:20.914200031 -0700 @@ -53,8 +53,657 @@ * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK -* checking tests ... OK +* checking tests ... ERROR Running 'tinytest.R' +Running the tests in 'tests/tinytest.R' failed. +Complete output: + > pkg <- "dtts" + > + > if (requireNamespace("tinytest", quietly=TRUE)) { + + tinytest::test_package(pkg) + + } + + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 1 tests OK + test_dtts.R................... 1 tests OK + test_dtts.R................... 1 tests OK + test_dtts.R................... 2 tests OK + test_dtts.R................... 2 tests OK + test_dtts.R................... 2 tests OK + test_dtts.R................... 3 tests OK + test_dtts.R................... 3 tests OK + test_dtts.R................... 3 tests OK + test_dtts.R................... 4 tests OK + test_dtts.R................... 4 tests OK + test_dtts.R................... 4 tests OK + test_dtts.R................... 5 tests OK + test_dtts.R................... 5 tests OK + test_dtts.R................... 5 tests OK + test_dtts.R................... 6 tests OK + test_dtts.R................... 6 tests OK + test_dtts.R................... 6 tests OK + test_dtts.R................... 7 tests OK + test_dtts.R................... 7 tests OK + test_dtts.R................... 7 tests OK + test_dtts.R................... 8 tests OK + test_dtts.R................... 8 tests OK + test_dtts.R................... 8 tests OK + test_dtts.R................... 9 tests OK + test_dtts.R................... 9 tests OK + test_dtts.R................... 9 tests OK + test_dtts.R................... 10 tests OK + test_dtts.R................... 10 tests OK + test_dtts.R................... 10 tests OK + test_dtts.R................... 11 tests OK + test_dtts.R................... 12 tests OK + test_dtts.R................... 13 tests OK + test_dtts.R................... 14 tests OK + test_dtts.R................... 15 tests OK + test_dtts.R................... 16 tests OK + test_dtts.R................... 16 tests OK + test_dtts.R................... 16 tests OK + test_dtts.R................... 16 tests OK + test_dtts.R................... 16 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 23 tests OK + test_dtts.R................... 24 tests OK + test_dtts.R................... 25 tests OK + test_dtts.R................... 26 tests OK + test_dtts.R................... 27 tests OK + test_dtts.R................... 28 tests OK + test_dtts.R................... 29 tests OK + test_dtts.R................... 30 tests OK + test_dtts.R................... 31 tests OK + test_dtts.R................... 31 tests OK + test_dtts.R................... 31 tests OK + test_dtts.R................... 32 tests OK + test_dtts.R................... 32 tests OK + test_dtts.R................... 32 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 47 tests 5 fails + test_dtts.R................... 47 tests 5 fails + test_dtts.R................... 47 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 49 tests 5 fails + test_dtts.R................... 49 tests 5 fails + test_dtts.R................... 49 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 54 tests 8 fails + test_dtts.R................... 55 tests 8 fails + test_dtts.R................... 55 tests 8 fails + test_dtts.R................... 55 tests 8 fails + test_dtts.R................... 55 tests 8 fails + test_dtts.R................... 56 tests 8 fails + test_dtts.R................... 56 tests 8 fails + test_dtts.R................... 56 tests 8 fails + test_dtts.R................... 57 tests 8 fails + test_dtts.R................... 57 tests 8 fails + test_dtts.R................... 57 tests 8 fails + test_dtts.R................... 58 tests 8 fails + test_dtts.R................... 58 tests 8 fails + test_dtts.R................... 58 tests 8 fails + test_dtts.R................... 58 tests 8 fails + test_dtts.R................... 59 tests 8 fails + test_dtts.R................... 59 tests 8 fails + test_dtts.R................... 59 tests 8 fails + test_dtts.R................... 59 tests 8 fails + test_dtts.R................... 60 tests 8 fails + test_dtts.R................... 60 tests 8 fails + test_dtts.R................... 60 tests 8 fails + test_dtts.R................... 60 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 65 tests 12 fails + test_dtts.R................... 65 tests 12 fails + test_dtts.R................... 66 tests 13 fails + test_dtts.R................... 67 tests 14 fails + test_dtts.R................... 67 tests 14 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 69 tests 16 fails + test_dtts.R................... 69 tests 16 fails + test_dtts.R................... 70 tests 17 fails + test_dtts.R................... 71 tests 18 fails + test_dtts.R................... 71 tests 18 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 73 tests 20 fails + test_dtts.R................... 73 tests 20 fails + test_dtts.R................... 74 tests 21 fails + test_dtts.R................... 75 tests 22 fails + test_dtts.R................... 75 tests 22 fails + test_dtts.R................... 76 tests 23 fails + test_dtts.R................... 76 tests 23 fails + test_dtts.R................... 76 tests 23 fails + test_dtts.R................... 77 tests 23 fails + test_dtts.R................... 77 tests 23 fails + test_dtts.R................... 77 tests 23 fails + test_dtts.R................... 78 tests 23 fails + test_dtts.R................... 78 tests 23 fails + test_dtts.R................... 78 tests 23 fails + test_dtts.R................... 79 tests 23 fails + test_dtts.R................... 79 tests 23 fails + test_dtts.R................... 79 tests 23 fails + test_dtts.R................... 80 tests 23 fails + test_dtts.R................... 80 tests 23 fails + test_dtts.R................... 80 tests 23 fails + test_dtts.R................... 81 tests 23 fails + test_dtts.R................... 81 tests 23 fails + test_dtts.R................... 81 tests 23 fails + test_dtts.R................... 82 tests 23 fails + test_dtts.R................... 82 tests 23 fails + test_dtts.R................... 82 tests 23 fails + test_dtts.R................... 83 tests 23 fails + test_dtts.R................... 83 tests 23 fails + test_dtts.R................... 83 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 102 tests 23 fails + test_dtts.R................... 102 tests 23 fails + test_dtts.R................... 102 tests 23 fails 0.9s + ----- FAILED[attr]: test_dtts.R<333--333> + call| expect_equal(align(dt1, t2, start = -as.nanoperiod("1d"), tz = "America/New_York", + call| --> func = nrow), expected) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<353--353> + call| expect_equal(align(dt1, t2, end = as.nanoperiod("1d"), tz = "America/New_York", + call| --> func = nrow), expected) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<379--379> + call| expect_equal(align(dt1, t2, start = -one_second_period, eopen = FALSE, + call| --> func = nrow, tz = "America/New_York"), exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<390--390> + call| expect_equal(align(dt1, t2, start = -one_second_period, func = nrow, + call| --> tz = "America/New_York"), exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<401--401> + call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, + call| --> eopen = FALSE, func = nrow, tz = "America/New_York"), exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<467--467> + call| expect_equal(res, exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<479--479> + call| expect_equal(res, exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<495--495> + call| expect_equal(res, exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<550--550> + call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, + call| --> func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<561--561> + call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, + call| --> func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<572--572> + call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, + call| --> sopen = FALSE, eopen = FALSE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<582--582> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, + call| --> eopen = TRUE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<584--584> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, + call| --> eopen = FALSE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<585--585> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, + call| --> eopen = TRUE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<587--587> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, + call| --> eopen = FALSE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<597--597> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, + call| --> eopen = TRUE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<599--599> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, + call| --> eopen = FALSE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<600--600> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, + call| --> eopen = TRUE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<602--602> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, + call| --> eopen = FALSE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<612--612> + call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, + call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<614--614> + call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, + call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<615--615> + call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, + call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<617--617> + call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, + call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) + diff| Different column names + Error: 23 out of 102 tests failed + Execution halted * checking PDF version of manual ... OK * DONE -Status: OK +Status: 1 ERROR > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: checking master release 1: tests ERROR OK > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } From https://github.com/rdatatable/data.table 9367451c..87397fb7 DataCodeIntegration -> origin/DataCodeIntegration ! [rejected] 1.15.0 -> 1.15.0 (would clobber existing tag) Cloning into '/tmp/th798/18389421/R-devel/358/data.table.git'... done. [1] "cd /tmp/th798/18389421/R-devel/358/data.table.git && git bisect start && git bisect old 770e80b6d83bad5870d1df2df252d5b00ddd5134 && git bisect new master && git bisect run /home/th798/R/R-devel/bin/Rscript ~/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R 'tests' OK /tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz 1.17.6" Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' See '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck/00check.log' for details. Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' See '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck/00check.log' for details. Installing package into '/tmp/th798/18389421/R-devel/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-devel/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' See '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck/00check.log' for details. status: waiting for both good and bad commits status: waiting for bad commit, 1 good commit known Bisecting: 140 revisions left to test after this (roughly 7 steps) [289a51feb516fa270e9969c88898a138f27f6d94] Merge branch 'master' into devBranch1 running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 70 revisions left to test after this (roughly 6 steps) [2642b8427c4a6c1bbde8f51b2fa8f79796699fc0] Avoid `memcpy(dst, NULL, 0)` in `forder.c` (#7055) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 35 revisions left to test after this (roughly 5 steps) [7f1b3bb520ea2befcabfc0c02697d6b3bfa5f07f] new helper function fctr to retain order of input in levels, closes #… (#4843) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > pkg <- "dtts" > > if (requireNamespace("tinytest", quietly=TRUE)) { + tinytest::test_package(pkg) + } test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 11 tests OK test_dtts.R................... 12 tests OK test_dtts.R................... 13 tests OK test_dtts.R................... 14 tests OK test_dtts.R................... 15 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 23 tests OK test_dtts.R................... 24 tests OK test_dtts.R................... 25 tests OK test_dtts.R................... 26 tests OK test_dtts.R................... 27 tests OK test_dtts.R................... 28 tests OK test_dtts.R................... 29 tests OK test_dtts.R................... 30 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 54 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 66 tests 13 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 70 tests 17 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 74 tests 21 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails 0.8s ----- FAILED[attr]: test_dtts.R<333--333> call| expect_equal(align(dt1, t2, start = -as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<353--353> call| expect_equal(align(dt1, t2, end = as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<379--379> call| expect_equal(align(dt1, t2, start = -one_second_period, eopen = FALSE, call| --> func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<390--390> call| expect_equal(align(dt1, t2, start = -one_second_period, func = nrow, call| --> tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<401--401> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<467--467> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<479--479> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<495--495> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<550--550> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<561--561> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<572--572> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> sopen = FALSE, eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<582--582> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<584--584> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<585--585> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<587--587> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<597--597> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<599--599> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<600--600> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<602--602> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<612--612> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<614--614> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<615--615> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<617--617> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names Error: 23 out of 102 tests failed Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests ERROR 44: PDF version of manual OK checking msg checking msg 1: tests ERROR Bisecting: 17 revisions left to test after this (roughly 4 steps) [8090fd737ebf5a6e987c924d3ce60f3254f8da66] mirror.packages: download newer versions (#7089) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 8 revisions left to test after this (roughly 3 steps) [6a6147e777cb3bcfa3257daa4d778d77848c059a] mention pipeline runs on branches (#7103) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 4 revisions left to test after this (roughly 2 steps) [ad2e22db6ea41050f095ea6dfb2a5a36157d0b0f] Expand altrep in assign (#5401) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 2 revisions left to test after this (roughly 1 step) [94f4081b9f8be13192fd8a43d0f721e246d5c347] Add error handling for gzipped file decompression and external command failures in fread() (#7097) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 0 revisions left to test after this (roughly 1 step) [d2b3ea723532d1a9e04357c7b1bbe5cae264bc29] additional formatting improvements for fread (#7106) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > pkg <- "dtts" > > if (requireNamespace("tinytest", quietly=TRUE)) { + tinytest::test_package(pkg) + } test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 11 tests OK test_dtts.R................... 12 tests OK test_dtts.R................... 13 tests OK test_dtts.R................... 14 tests OK test_dtts.R................... 15 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 23 tests OK test_dtts.R................... 24 tests OK test_dtts.R................... 25 tests OK test_dtts.R................... 26 tests OK test_dtts.R................... 27 tests OK test_dtts.R................... 28 tests OK test_dtts.R................... 29 tests OK test_dtts.R................... 30 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 54 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 66 tests 13 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 70 tests 17 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 74 tests 21 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails 0.8s ----- FAILED[attr]: test_dtts.R<333--333> call| expect_equal(align(dt1, t2, start = -as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<353--353> call| expect_equal(align(dt1, t2, end = as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<379--379> call| expect_equal(align(dt1, t2, start = -one_second_period, eopen = FALSE, call| --> func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<390--390> call| expect_equal(align(dt1, t2, start = -one_second_period, func = nrow, call| --> tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<401--401> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<467--467> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<479--479> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<495--495> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<550--550> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<561--561> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<572--572> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> sopen = FALSE, eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<582--582> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<584--584> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<585--585> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<587--587> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<597--597> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<599--599> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<600--600> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<602--602> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<612--612> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<614--614> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<615--615> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<617--617> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names Error: 23 out of 102 tests failed Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests ERROR 44: PDF version of manual OK checking msg checking msg 1: tests ERROR Bisecting: 0 revisions left to test after this (roughly 0 steps) [131af20abaa9400ae0604ea91f42f33e065f603e] data.table names handling for unnamed matrix (#4363) running '/home/th798/R/R-devel/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/Rtmp20vXL1/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-devel/358/data.table.git/dtts.Rcheck' * using R Under development (unstable) (2025-07-08 r88392) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > pkg <- "dtts" > > if (requireNamespace("tinytest", quietly=TRUE)) { + tinytest::test_package(pkg) + } test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 11 tests OK test_dtts.R................... 12 tests OK test_dtts.R................... 13 tests OK test_dtts.R................... 14 tests OK test_dtts.R................... 15 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 23 tests OK test_dtts.R................... 24 tests OK test_dtts.R................... 25 tests OK test_dtts.R................... 26 tests OK test_dtts.R................... 27 tests OK test_dtts.R................... 28 tests OK test_dtts.R................... 29 tests OK test_dtts.R................... 30 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 54 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 66 tests 13 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 70 tests 17 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 74 tests 21 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails 0.8s ----- FAILED[attr]: test_dtts.R<333--333> call| expect_equal(align(dt1, t2, start = -as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<353--353> call| expect_equal(align(dt1, t2, end = as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<379--379> call| expect_equal(align(dt1, t2, start = -one_second_period, eopen = FALSE, call| --> func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<390--390> call| expect_equal(align(dt1, t2, start = -one_second_period, func = nrow, call| --> tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<401--401> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<467--467> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<479--479> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<495--495> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<550--550> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<561--561> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<572--572> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> sopen = FALSE, eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<582--582> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<584--584> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<585--585> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<587--587> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<597--597> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<599--599> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<600--600> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<602--602> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<612--612> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<614--614> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<615--615> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<617--617> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names Error: 23 out of 102 tests failed Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests ERROR 44: PDF version of manual OK checking msg checking msg 1: tests ERROR 131af20abaa9400ae0604ea91f42f33e065f603e is the first new commit commit 131af20abaa9400ae0604ea91f42f33e065f603e Author: Jan Gorecki Date: Sat Jun 28 11:08:00 2025 +0200 data.table names handling for unnamed matrix (#4363) * data.table names handling for unnamed matrix * tweak NEWS * tighten up tests * walk back update for check.names default * retain column vector's name, if present * further shrink diff --------- Co-authored-by: Michael Chirico NEWS.md | 2 ++ R/as.data.table.R | 6 +++++- inst/tests/tests.Rraw | 23 ++++++++++++++++------- 3 files changed, 23 insertions(+), 8 deletions(-) bisect found first bad commit > WARNING: ignoring environment value of R_HOME R version 4.5.1 (2025-06-13) -- "Great Square Root" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-07-09/deps.csv", task.str = "358", release = "/scratch/th798/data.table-revdeps/2025-07-09/data.table_release_1.17.6.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-07-09/data.table_master_1.17.99.8b1e3f9bd6909257c545c000f5ff8d12580553b5.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/18389421/R-release/358" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/18389421/R-release/358/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "dtts" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/18389421/R-release/358/library" [2] "/projects/genomic-ml/R/R-release/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-07-09 01:13:52 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) also installing the dependency 'tinytest' trying URL 'http://cloud.r-project.org/src/contrib/tinytest_1.4.1.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/dtts_0.1.3.tar.gz' * installing *source* package 'tinytest' ... ** this is package 'tinytest' version '1.4.1' ** package 'tinytest' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytest) * installing *source* package 'dtts' ... ** this is package 'dtts' version '0.1.3' ** package 'dtts' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppCCTZ/include' -I'/projects/genomic-ml/R/R-release/library/RcppDate/include' -I'/projects/genomic-ml/R/R-release/library/nanotime/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppCCTZ/include' -I'/projects/genomic-ml/R/R-release/library/RcppDate/include' -I'/projects/genomic-ml/R/R-release/library/nanotime/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c align.cpp -o align.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o dtts.so RcppExports.o align.o installing to /tmp/th798/18389421/R-release/358/library/00LOCK-dtts/00new/dtts/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dtts) The downloaded source packages are in '/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 14.256 1.024 34.612 > print(Sys.time()) [1] "2025-07-09 01:14:27 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-07-09 01:14:27 MST" Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-07-09 01:14:48 MST" * using log directory '/tmp/th798/18389421/R-release/358/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'tinytest.R' OK * checking PDF version of manual ... OK * DONE Status: OK [1] "2025-07-09 01:16:27 MST" [1] "2025-07-09 01:16:27 MST" Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.99' ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mergelist.c -o mergelist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-07-09 01:16:57 MST" * using log directory '/tmp/th798/18389421/R-release/358/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'tinytest.R' ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > pkg <- "dtts" > > if (requireNamespace("tinytest", quietly=TRUE)) { + tinytest::test_package(pkg) + } test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 11 tests OK test_dtts.R................... 12 tests OK test_dtts.R................... 13 tests OK test_dtts.R................... 14 tests OK test_dtts.R................... 15 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 23 tests OK test_dtts.R................... 24 tests OK test_dtts.R................... 25 tests OK test_dtts.R................... 26 tests OK test_dtts.R................... 27 tests OK test_dtts.R................... 28 tests OK test_dtts.R................... 29 tests OK test_dtts.R................... 30 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 54 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 66 tests 13 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 70 tests 17 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 74 tests 21 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails 0.8s ----- FAILED[attr]: test_dtts.R<333--333> call| expect_equal(align(dt1, t2, start = -as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<353--353> call| expect_equal(align(dt1, t2, end = as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<379--379> call| expect_equal(align(dt1, t2, start = -one_second_period, eopen = FALSE, call| --> func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<390--390> call| expect_equal(align(dt1, t2, start = -one_second_period, func = nrow, call| --> tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<401--401> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<467--467> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<479--479> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<495--495> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<550--550> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<561--561> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<572--572> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> sopen = FALSE, eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<582--582> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<584--584> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<585--585> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<587--587> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<597--597> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<599--599> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<600--600> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<602--602> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<612--612> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<614--614> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<615--615> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<617--617> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names Error: 23 out of 102 tests failed Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR See '/tmp/th798/18389421/R-release/358/dtts.Rcheck/00check.log' for details. [1] "2025-07-09 01:18:33 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) --- R_version_4.5.1_2025-06-13/release_1.17.6.Rcheck/00check.log 2025-07-09 01:16:27.842476868 -0700 +++ R_version_4.5.1_2025-06-13/master_1.17.99.8b1e3f9bd6909257c545c000f5ff8d12580553b5.Rcheck/00check.log 2025-07-09 01:18:33.105851072 -0700 @@ -53,8 +53,657 @@ * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK -* checking tests ... OK +* checking tests ... ERROR Running 'tinytest.R' +Running the tests in 'tests/tinytest.R' failed. +Complete output: + > pkg <- "dtts" + > + > if (requireNamespace("tinytest", quietly=TRUE)) { + + tinytest::test_package(pkg) + + } + + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 0 tests + test_dtts.R................... 1 tests OK + test_dtts.R................... 1 tests OK + test_dtts.R................... 1 tests OK + test_dtts.R................... 2 tests OK + test_dtts.R................... 2 tests OK + test_dtts.R................... 2 tests OK + test_dtts.R................... 3 tests OK + test_dtts.R................... 3 tests OK + test_dtts.R................... 3 tests OK + test_dtts.R................... 4 tests OK + test_dtts.R................... 4 tests OK + test_dtts.R................... 4 tests OK + test_dtts.R................... 5 tests OK + test_dtts.R................... 5 tests OK + test_dtts.R................... 5 tests OK + test_dtts.R................... 6 tests OK + test_dtts.R................... 6 tests OK + test_dtts.R................... 6 tests OK + test_dtts.R................... 7 tests OK + test_dtts.R................... 7 tests OK + test_dtts.R................... 7 tests OK + test_dtts.R................... 8 tests OK + test_dtts.R................... 8 tests OK + test_dtts.R................... 8 tests OK + test_dtts.R................... 9 tests OK + test_dtts.R................... 9 tests OK + test_dtts.R................... 9 tests OK + test_dtts.R................... 10 tests OK + test_dtts.R................... 10 tests OK + test_dtts.R................... 10 tests OK + test_dtts.R................... 11 tests OK + test_dtts.R................... 12 tests OK + test_dtts.R................... 13 tests OK + test_dtts.R................... 14 tests OK + test_dtts.R................... 15 tests OK + test_dtts.R................... 16 tests OK + test_dtts.R................... 16 tests OK + test_dtts.R................... 16 tests OK + test_dtts.R................... 16 tests OK + test_dtts.R................... 16 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 17 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 18 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 19 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 20 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 21 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 22 tests OK + test_dtts.R................... 23 tests OK + test_dtts.R................... 24 tests OK + test_dtts.R................... 25 tests OK + test_dtts.R................... 26 tests OK + test_dtts.R................... 27 tests OK + test_dtts.R................... 28 tests OK + test_dtts.R................... 29 tests OK + test_dtts.R................... 30 tests OK + test_dtts.R................... 31 tests OK + test_dtts.R................... 31 tests OK + test_dtts.R................... 31 tests OK + test_dtts.R................... 32 tests OK + test_dtts.R................... 32 tests OK + test_dtts.R................... 32 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 33 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 34 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 35 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 36 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 37 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 38 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 39 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 40 tests OK + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 41 tests 1 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 42 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 43 tests 2 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 44 tests 3 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 45 tests 4 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 46 tests 5 fails + test_dtts.R................... 47 tests 5 fails + test_dtts.R................... 47 tests 5 fails + test_dtts.R................... 47 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 48 tests 5 fails + test_dtts.R................... 49 tests 5 fails + test_dtts.R................... 49 tests 5 fails + test_dtts.R................... 49 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 50 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 51 tests 5 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 52 tests 6 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 53 tests 7 fails + test_dtts.R................... 54 tests 8 fails + test_dtts.R................... 55 tests 8 fails + test_dtts.R................... 55 tests 8 fails + test_dtts.R................... 55 tests 8 fails + test_dtts.R................... 55 tests 8 fails + test_dtts.R................... 56 tests 8 fails + test_dtts.R................... 56 tests 8 fails + test_dtts.R................... 56 tests 8 fails + test_dtts.R................... 57 tests 8 fails + test_dtts.R................... 57 tests 8 fails + test_dtts.R................... 57 tests 8 fails + test_dtts.R................... 58 tests 8 fails + test_dtts.R................... 58 tests 8 fails + test_dtts.R................... 58 tests 8 fails + test_dtts.R................... 58 tests 8 fails + test_dtts.R................... 59 tests 8 fails + test_dtts.R................... 59 tests 8 fails + test_dtts.R................... 59 tests 8 fails + test_dtts.R................... 59 tests 8 fails + test_dtts.R................... 60 tests 8 fails + test_dtts.R................... 60 tests 8 fails + test_dtts.R................... 60 tests 8 fails + test_dtts.R................... 60 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 61 tests 8 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 62 tests 9 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 63 tests 10 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 64 tests 11 fails + test_dtts.R................... 65 tests 12 fails + test_dtts.R................... 65 tests 12 fails + test_dtts.R................... 66 tests 13 fails + test_dtts.R................... 67 tests 14 fails + test_dtts.R................... 67 tests 14 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 68 tests 15 fails + test_dtts.R................... 69 tests 16 fails + test_dtts.R................... 69 tests 16 fails + test_dtts.R................... 70 tests 17 fails + test_dtts.R................... 71 tests 18 fails + test_dtts.R................... 71 tests 18 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 72 tests 19 fails + test_dtts.R................... 73 tests 20 fails + test_dtts.R................... 73 tests 20 fails + test_dtts.R................... 74 tests 21 fails + test_dtts.R................... 75 tests 22 fails + test_dtts.R................... 75 tests 22 fails + test_dtts.R................... 76 tests 23 fails + test_dtts.R................... 76 tests 23 fails + test_dtts.R................... 76 tests 23 fails + test_dtts.R................... 77 tests 23 fails + test_dtts.R................... 77 tests 23 fails + test_dtts.R................... 77 tests 23 fails + test_dtts.R................... 78 tests 23 fails + test_dtts.R................... 78 tests 23 fails + test_dtts.R................... 78 tests 23 fails + test_dtts.R................... 79 tests 23 fails + test_dtts.R................... 79 tests 23 fails + test_dtts.R................... 79 tests 23 fails + test_dtts.R................... 80 tests 23 fails + test_dtts.R................... 80 tests 23 fails + test_dtts.R................... 80 tests 23 fails + test_dtts.R................... 81 tests 23 fails + test_dtts.R................... 81 tests 23 fails + test_dtts.R................... 81 tests 23 fails + test_dtts.R................... 82 tests 23 fails + test_dtts.R................... 82 tests 23 fails + test_dtts.R................... 82 tests 23 fails + test_dtts.R................... 83 tests 23 fails + test_dtts.R................... 83 tests 23 fails + test_dtts.R................... 83 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 84 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 85 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 86 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 87 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 88 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 89 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 90 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 91 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 92 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 93 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 94 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 95 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 96 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 97 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 98 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 99 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 100 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 101 tests 23 fails + test_dtts.R................... 102 tests 23 fails + test_dtts.R................... 102 tests 23 fails + test_dtts.R................... 102 tests 23 fails 0.8s + ----- FAILED[attr]: test_dtts.R<333--333> + call| expect_equal(align(dt1, t2, start = -as.nanoperiod("1d"), tz = "America/New_York", + call| --> func = nrow), expected) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<353--353> + call| expect_equal(align(dt1, t2, end = as.nanoperiod("1d"), tz = "America/New_York", + call| --> func = nrow), expected) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<379--379> + call| expect_equal(align(dt1, t2, start = -one_second_period, eopen = FALSE, + call| --> func = nrow, tz = "America/New_York"), exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<390--390> + call| expect_equal(align(dt1, t2, start = -one_second_period, func = nrow, + call| --> tz = "America/New_York"), exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<401--401> + call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, + call| --> eopen = FALSE, func = nrow, tz = "America/New_York"), exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<467--467> + call| expect_equal(res, exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<479--479> + call| expect_equal(res, exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<495--495> + call| expect_equal(res, exp) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<550--550> + call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, + call| --> func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<561--561> + call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, + call| --> func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<572--572> + call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, + call| --> sopen = FALSE, eopen = FALSE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<582--582> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, + call| --> eopen = TRUE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<584--584> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, + call| --> eopen = FALSE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<585--585> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, + call| --> eopen = TRUE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<587--587> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, + call| --> eopen = FALSE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<597--597> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, + call| --> eopen = TRUE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<599--599> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, + call| --> eopen = FALSE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<600--600> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, + call| --> eopen = TRUE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<602--602> + call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, + call| --> eopen = FALSE, func = sum), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<612--612> + call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, + call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<614--614> + call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, + call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<615--615> + call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, + call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) + diff| Different column names + ----- FAILED[attr]: test_dtts.R<617--617> + call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, + call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) + diff| Different column names + Error: 23 out of 102 tests failed + Execution halted * checking PDF version of manual ... OK * DONE -Status: OK +Status: 1 ERROR > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: checking master release 1: tests ERROR OK > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } From https://github.com/rdatatable/data.table ! [rejected] 1.15.0 -> 1.15.0 (would clobber existing tag) Cloning into '/tmp/th798/18389421/R-release/358/data.table.git'... done. [1] "cd /tmp/th798/18389421/R-release/358/data.table.git && git bisect start && git bisect old 770e80b6d83bad5870d1df2df252d5b00ddd5134 && git bisect new master && git bisect run /home/th798/R/R-release/bin/Rscript ~/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R 'tests' OK /tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz 1.17.6" Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' See '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck/00check.log' for details. Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' See '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck/00check.log' for details. Installing package into '/tmp/th798/18389421/R-release/358/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.6' ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' installing to /tmp/th798/18389421/R-release/358/library/00LOCK-data.table.git/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) Running 'tinytest.R' See '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck/00check.log' for details. status: waiting for both good and bad commits status: waiting for bad commit, 1 good commit known Bisecting: 140 revisions left to test after this (roughly 7 steps) [289a51feb516fa270e9969c88898a138f27f6d94] Merge branch 'master' into devBranch1 running '/home/th798/R/R-release/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 70 revisions left to test after this (roughly 6 steps) [2642b8427c4a6c1bbde8f51b2fa8f79796699fc0] Avoid `memcpy(dst, NULL, 0)` in `forder.c` (#7055) running '/home/th798/R/R-release/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 35 revisions left to test after this (roughly 5 steps) [7f1b3bb520ea2befcabfc0c02697d6b3bfa5f07f] new helper function fctr to retain order of input in levels, closes #… (#4843) running '/home/th798/R/R-release/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > pkg <- "dtts" > > if (requireNamespace("tinytest", quietly=TRUE)) { + tinytest::test_package(pkg) + } test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 11 tests OK test_dtts.R................... 12 tests OK test_dtts.R................... 13 tests OK test_dtts.R................... 14 tests OK test_dtts.R................... 15 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 23 tests OK test_dtts.R................... 24 tests OK test_dtts.R................... 25 tests OK test_dtts.R................... 26 tests OK test_dtts.R................... 27 tests OK test_dtts.R................... 28 tests OK test_dtts.R................... 29 tests OK test_dtts.R................... 30 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 54 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 66 tests 13 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 70 tests 17 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 74 tests 21 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails 0.8s ----- FAILED[attr]: test_dtts.R<333--333> call| expect_equal(align(dt1, t2, start = -as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<353--353> call| expect_equal(align(dt1, t2, end = as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<379--379> call| expect_equal(align(dt1, t2, start = -one_second_period, eopen = FALSE, call| --> func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<390--390> call| expect_equal(align(dt1, t2, start = -one_second_period, func = nrow, call| --> tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<401--401> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<467--467> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<479--479> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<495--495> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<550--550> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<561--561> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<572--572> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> sopen = FALSE, eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<582--582> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<584--584> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<585--585> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<587--587> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<597--597> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<599--599> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<600--600> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<602--602> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<612--612> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<614--614> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<615--615> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<617--617> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names Error: 23 out of 102 tests failed Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests ERROR 44: PDF version of manual OK checking msg checking msg 1: tests ERROR Bisecting: 17 revisions left to test after this (roughly 4 steps) [8090fd737ebf5a6e987c924d3ce60f3254f8da66] mirror.packages: download newer versions (#7089) running '/home/th798/R/R-release/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 8 revisions left to test after this (roughly 3 steps) [6a6147e777cb3bcfa3257daa4d778d77848c059a] mention pipeline runs on branches (#7103) running '/home/th798/R/R-release/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 4 revisions left to test after this (roughly 2 steps) [ad2e22db6ea41050f095ea6dfb2a5a36157d0b0f] Expand altrep in assign (#5401) running '/home/th798/R/R-release/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 2 revisions left to test after this (roughly 1 step) [94f4081b9f8be13192fd8a43d0f721e246d5c347] Add error handling for gzipped file decompression and external command failures in fread() (#7097) running '/home/th798/R/R-release/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... OK * checking PDF version of manual ... OK * DONE Status: OK checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests OK 44: PDF version of manual OK checking msg checking msg 1: tests OK Bisecting: 0 revisions left to test after this (roughly 1 step) [d2b3ea723532d1a9e04357c7b1bbe5cae264bc29] additional formatting improvements for fread (#7106) running '/home/th798/R/R-release/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > pkg <- "dtts" > > if (requireNamespace("tinytest", quietly=TRUE)) { + tinytest::test_package(pkg) + } test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 11 tests OK test_dtts.R................... 12 tests OK test_dtts.R................... 13 tests OK test_dtts.R................... 14 tests OK test_dtts.R................... 15 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 23 tests OK test_dtts.R................... 24 tests OK test_dtts.R................... 25 tests OK test_dtts.R................... 26 tests OK test_dtts.R................... 27 tests OK test_dtts.R................... 28 tests OK test_dtts.R................... 29 tests OK test_dtts.R................... 30 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 54 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 66 tests 13 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 70 tests 17 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 74 tests 21 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails 0.8s ----- FAILED[attr]: test_dtts.R<333--333> call| expect_equal(align(dt1, t2, start = -as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<353--353> call| expect_equal(align(dt1, t2, end = as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<379--379> call| expect_equal(align(dt1, t2, start = -one_second_period, eopen = FALSE, call| --> func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<390--390> call| expect_equal(align(dt1, t2, start = -one_second_period, func = nrow, call| --> tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<401--401> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<467--467> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<479--479> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<495--495> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<550--550> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<561--561> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<572--572> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> sopen = FALSE, eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<582--582> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<584--584> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<585--585> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<587--587> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<597--597> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<599--599> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<600--600> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<602--602> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<612--612> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<614--614> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<615--615> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<617--617> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names Error: 23 out of 102 tests failed Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests ERROR 44: PDF version of manual OK checking msg checking msg 1: tests ERROR Bisecting: 0 revisions left to test after this (roughly 0 steps) [131af20abaa9400ae0604ea91f42f33e065f603e] data.table names handling for unnamed matrix (#4363) running '/home/th798/R/R-release/bin/Rscript' '/home/th798/genomic-ml/data.table-revdeps/install_dt_then_check_dep.R' 'tests' 'OK' '/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz' '1.17.6' checking "tests" expected "OK" rev_dep_tar_gz "/tmp/th798/18389421/RtmpDwaeKs/downloaded_packages/dtts_0.1.3.tar.gz" dt_release_version "1.17.6" zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi * using log directory '/tmp/th798/18389421/R-release/358/data.table.git/dtts.Rcheck' * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'dtts/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'dtts' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'dtts' can be installed ... OK * used C++ compiler: 'g++ (Spack GCC) 12.2.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ERROR Running the tests in 'tests/tinytest.R' failed. Complete output: > pkg <- "dtts" > > if (requireNamespace("tinytest", quietly=TRUE)) { + tinytest::test_package(pkg) + } test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 0 tests test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 1 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 2 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 3 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 4 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 5 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 6 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 7 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 8 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 9 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 10 tests OK test_dtts.R................... 11 tests OK test_dtts.R................... 12 tests OK test_dtts.R................... 13 tests OK test_dtts.R................... 14 tests OK test_dtts.R................... 15 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 16 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 17 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 18 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 19 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 20 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 21 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 22 tests OK test_dtts.R................... 23 tests OK test_dtts.R................... 24 tests OK test_dtts.R................... 25 tests OK test_dtts.R................... 26 tests OK test_dtts.R................... 27 tests OK test_dtts.R................... 28 tests OK test_dtts.R................... 29 tests OK test_dtts.R................... 30 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 31 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 32 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 33 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 34 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 35 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 36 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 37 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 38 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 39 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 40 tests OK test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 41 tests 1 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 42 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 43 tests 2 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 44 tests 3 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 45 tests 4 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 46 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 47 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 48 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 49 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 50 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 51 tests 5 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 52 tests 6 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 53 tests 7 fails test_dtts.R................... 54 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 55 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 56 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 57 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 58 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 59 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 60 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 61 tests 8 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 62 tests 9 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 63 tests 10 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 64 tests 11 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 65 tests 12 fails test_dtts.R................... 66 tests 13 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 67 tests 14 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 68 tests 15 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 69 tests 16 fails test_dtts.R................... 70 tests 17 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 71 tests 18 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 72 tests 19 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 73 tests 20 fails test_dtts.R................... 74 tests 21 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 75 tests 22 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 76 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 77 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 78 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 79 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 80 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 81 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 82 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 83 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 84 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 85 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 86 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 87 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 88 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 89 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 90 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 91 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 92 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 93 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 94 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 95 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 96 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 97 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 98 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 99 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 100 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 101 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails test_dtts.R................... 102 tests 23 fails 0.8s ----- FAILED[attr]: test_dtts.R<333--333> call| expect_equal(align(dt1, t2, start = -as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<353--353> call| expect_equal(align(dt1, t2, end = as.nanoperiod("1d"), tz = "America/New_York", call| --> func = nrow), expected) diff| Different column names ----- FAILED[attr]: test_dtts.R<379--379> call| expect_equal(align(dt1, t2, start = -one_second_period, eopen = FALSE, call| --> func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<390--390> call| expect_equal(align(dt1, t2, start = -one_second_period, func = nrow, call| --> tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<401--401> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = nrow, tz = "America/New_York"), exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<467--467> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<479--479> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<495--495> call| expect_equal(res, exp) diff| Different column names ----- FAILED[attr]: test_dtts.R<550--550> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<561--561> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<572--572> call| expect_equal(align(dt1, t2, start = -2 * one_second_duration, call| --> sopen = FALSE, eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<582--582> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<584--584> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<585--585> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<587--587> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<597--597> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<599--599> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = TRUE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<600--600> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = TRUE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<602--602> call| expect_equal(align(dt1, t2, start = -one_second_duration, sopen = FALSE, call| --> eopen = FALSE, func = sum), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<612--612> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<614--614> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = TRUE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<615--615> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = TRUE, func = sum, tz = "UTC"), dt2) diff| Different column names ----- FAILED[attr]: test_dtts.R<617--617> call| expect_equal(align(dt1, t2, start = -one_second_period, sopen = FALSE, call| --> eopen = FALSE, func = sum, tz = "UTC"), dt2) diff| Different column names Error: 23 out of 102 tests failed Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR checking msg 1: for file 'dtts/DESCRIPTION' OK 2: package namespace information OK 3: package dependencies OK 4: if this is a source package OK 5: if there is a namespace OK 6: for executable files OK 7: for hidden files and directories OK 8: for portable file names OK 9: for sufficient/correct file permissions OK 10: whether package 'dtts' can be installed OK 11: package directory OK 12: DESCRIPTION meta-information OK 13: top-level files OK 14: for left-over files OK 15: index information OK 16: package subdirectories OK 17: code files for non-ASCII characters OK 18: R files for syntax errors OK 19: whether the package can be loaded OK 20: whether the package can be loaded with stated dependencies OK 21: whether the package can be unloaded cleanly OK 22: whether the namespace can be loaded with stated dependencies OK 23: whether the namespace can be unloaded cleanly OK 24: loading without being on the library search path OK 25: dependencies in R code OK 26: S3 generic/method consistency OK 27: replacement functions OK 28: foreign function calls OK 29: R code for possible problems OK 30: Rd files OK 31: Rd metadata OK 32: Rd cross-references OK 33: for missing documentation entries OK 34: for code/documentation mismatches OK 35: Rd \\usage sections OK 36: Rd contents OK 37: for unstated dependencies in examples OK 38: line endings in shell scripts OK 39: line endings in C/C++/Fortran sources/headers OK 40: compiled code OK 41: examples OK 42: for unstated dependencies in 'tests' OK 43: tests ERROR 44: PDF version of manual OK checking msg checking msg 1: tests ERROR 131af20abaa9400ae0604ea91f42f33e065f603e is the first new commit commit 131af20abaa9400ae0604ea91f42f33e065f603e Author: Jan Gorecki Date: Sat Jun 28 11:08:00 2025 +0200 data.table names handling for unnamed matrix (#4363) * data.table names handling for unnamed matrix * tweak NEWS * tighten up tests * walk back update for check.names default * retain column vector's name, if present * further shrink diff --------- Co-authored-by: Michael Chirico NEWS.md | 2 ++ R/as.data.table.R | 6 +++++- inst/tests/tests.Rraw | 23 ++++++++++++++++------- 3 files changed, 23 insertions(+), 8 deletions(-) bisect found first bad commit >