Note: the module "R" cannot be unloaded because it was not loaded.

WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-12-13 r89166) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> cargs <- commandArgs(trailingOnly=TRUE)
> if(length(cargs)==0){
+   ## before running interactively, make sure to start emacs/R with
+   ## environment defined in /scratch/...check_one.sh, particularly
+   ## R_LIBS_USER=/tmp/... otherwise we get error when installing
+   ## data.table.
+   base <- "/scratch/th798/data.table-revdeps/*"
+   cargs <- c(
+     Sys.glob(file.path(base,"deps.csv")),
+     "349",
+     Sys.glob(file.path(base, "data.table_release_*tar.gz")),
+     Sys.glob(file.path(base, "data.table_master_*tar.gz"))
+   )
+ }
> names(cargs) <- c("deps.csv", "task.str", "release", "master")
> dput(cargs)
c(deps.csv = "/scratch/th798/data.table-revdeps/2025-12-14/deps.csv", 
task.str = "1541", release = "/scratch/th798/data.table-revdeps/2025-12-14/data.table_release_1.17.8.tar.gz", 
master = "/scratch/th798/data.table-revdeps/2025-12-14/data.table_master_1.17.99.6329d94b83b72bb1f05dc2a10374e84a61ff950d.tar.gz"
)
> (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers
[1] "/tmp/th798/25892271/R-devel/1541"
> if(requireNamespace("R.cache"))R.cache::getCachePath()
Loading required namespace: R.cache
[1] "/tmp/th798/25892271/R-devel/1541/R.cache"
> task.id <- as.integer(cargs[["task.str"]])
> deps.df <- read.csv(cargs[["deps.csv"]])
> (rev.dep <- deps.df$Package[task.id])
[1] "trtswitch"
> job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id)
> setwd(task.dir)
> .libPaths()
[1] "/tmp/th798/25892271/R-devel/1541/library"
[2] "/projects/genomic-ml/R/R-devel/library"  
> options(repos=c(#this should be in ~/.Rprofile too.
+   CRAN="http://cloud.r-project.org"))
> print(Sys.time())
[1] "2025-12-14 01:28:27 MST"
> install.time <- system.time({
+   install.packages(rev.dep, dep=TRUE)
+ })
Installing package into '/tmp/th798/25892271/R-devel/1541/library'
(as 'lib' is unspecified)
also installing the dependencies 'scales', 'ggplot2', 'xfun', 'yaml', 'Rcpp', 'cowplot', 'knitr', 'rmarkdown'

trying URL 'http://cloud.r-project.org/src/contrib/scales_1.4.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/ggplot2_4.0.1.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/xfun_0.54.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/yaml_2.3.12.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/4.6.0/Other/Rcpp_1.1.0.8.1.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/cowplot_1.2.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/knitr_1.50.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/rmarkdown_2.30.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/trtswitch_0.2.2.tar.gz'
* installing *source* package 'scales' ...
** this is package 'scales' version '1.4.0'
** package 'scales' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scales)
* installing *source* package 'xfun' ...
** this is package 'xfun' version '0.54'
** package 'xfun' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c base64.c -o base64.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rand_lcg.c -o rand_lcg.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o xfun.so base64.o init.o rand_lcg.o
installing to /tmp/th798/25892271/R-devel/1541/library/00LOCK-xfun/00new/xfun/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xfun)
* installing *source* package 'yaml' ...
** this is package 'yaml' version '2.3.12'
** package 'yaml' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c api.c -o api.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dumper.c -o dumper.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c emitter.c -o emitter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c implicit.c -o implicit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c loader.c -o loader.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c parser.c -o parser.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c r_emit.c -o r_emit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c r_ext.c -o r_ext.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c r_parse.c -o r_parse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reader.c -o reader.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c scanner.c -o scanner.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c writer.c -o writer.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o
installing to /tmp/th798/25892271/R-devel/1541/library/00LOCK-yaml/00new/yaml/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (yaml)
* installing *source* package 'Rcpp' ...
** this is package 'Rcpp' version '1.1.0.8.1'
** package 'Rcpp' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c api.cpp -o api.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c attributes.cpp -o attributes.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c barrier.cpp -o barrier.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c date.cpp -o date.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c module.cpp -o module.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c rcpp_init.cpp -o rcpp_init.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o
installing to /tmp/th798/25892271/R-devel/1541/library/00LOCK-Rcpp/00new/Rcpp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpp)
* installing *source* package 'ggplot2' ...
** this is package 'ggplot2' version '4.0.1'
** package 'ggplot2' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggplot2)
* installing *source* package 'knitr' ...
** this is package 'knitr' version '1.50'
** package 'knitr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (knitr)
* installing *source* package 'cowplot' ...
** this is package 'cowplot' version '1.2.0'
** package 'cowplot' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cowplot)
* installing *source* package 'rmarkdown' ...
** this is package 'rmarkdown' version '2.30'
** package 'rmarkdown' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rmarkdown)
* installing *source* package 'trtswitch' ...
** this is package 'trtswitch' version '0.2.2'
** package 'trtswitch' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RcppExports.cpp -o RcppExports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c ipcw.cpp -o ipcw.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c ipe.cpp -o ipe.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c logistic_regression.cpp -o logistic_regression.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c msm.cpp -o msm.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c recensor_sim_rpsftm.cpp -o recensor_sim_rpsftm.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c rpsftm.cpp -o rpsftm.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c splines.cpp -o splines.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c survival_analysis.cpp -o survival_analysis.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c tsegest.cpp -o tsegest.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c tsegestsim.cpp -o tsegestsim.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c tsesimp.cpp -o tsesimp.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c tssim.cpp -o tssim.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/25892271/R-devel/1541/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c utilities.cpp -o utilities.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o trtswitch.so RcppExports.o ipcw.o ipe.o logistic_regression.o msm.o recensor_sim_rpsftm.o rpsftm.o splines.o survival_analysis.o tsegest.o tsegestsim.o tsesimp.o tssim.o utilities.o
installing to /tmp/th798/25892271/R-devel/1541/library/00LOCK-trtswitch/00new/trtswitch/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so':
  /projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so: undefined symbol: Rf_GetOption
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package 'trtswitch'
* removing '/tmp/th798/25892271/R-devel/1541/library/trtswitch'

The downloaded source packages are in
	'/tmp/th798/25892271/RtmpSR4kNR/downloaded_packages'
Warning message:
In install.packages(rev.dep, dep = TRUE) :
  installation of package 'trtswitch' had non-zero exit status
> cat("Time to install revdep:\n")
Time to install revdep:
> print(install.time)
   user  system elapsed 
127.891   7.115 138.599 
> print(Sys.time())
[1] "2025-12-14 01:30:45 MST"
> downloaded_packages <- file.path(
+   tempdir(),
+   "downloaded_packages")
> dl.glob <- file.path(
+   downloaded_packages,
+   paste0(rev.dep,"_*.tar.gz"))
> rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob))
> colnames(rev.dep.dl.row) <- c("pkg","path")
> rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE)
> pkg.Rcheck <- paste0(rev.dep, ".Rcheck")
> 
> proj.dir <- "~/genomic-ml/data.table-revdeps"
> source(file.path(proj.dir, "myStatus.R"))
> Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]]))
> dir.create(Rvers, showWarnings=FALSE)
> Rcheck.list <- list()
> for(dt.version.short in c("release", "master")){
+   dt.tar.gz <- cargs[[dt.version.short]]
+   dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz)
+   print(Sys.time())
+   install.packages(dt.tar.gz, repos=NULL)
+   print(Sys.time())
+   check.cmd <- get_check_cmd(rev.dep.release.tar.gz)
+   system(check.cmd)
+   print(Sys.time())
+   dest.Rcheck <- file.path(
+     Rvers,
+     paste0(dt.version, ".Rcheck"))
+   unlink(dest.Rcheck, recursive=TRUE)
+   file.rename(pkg.Rcheck, dest.Rcheck)
+   Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log")
+ }
[1] "2025-12-14 01:30:45 MST"
Installing package into '/tmp/th798/25892271/R-devel/1541/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.17.8'
** package 'data.table' successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/25892271/R-devel/1541/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-12-14 01:31:05 MST"
* using log directory '/tmp/th798/25892271/R-devel/1541/trtswitch.Rcheck'
* using R Under development (unstable) (2025-12-13 r89166)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'trtswitch/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'trtswitch' version '0.2.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'trtswitch' can be installed ... OK
* used C++ compiler: 'g++ (Spack GCC) 12.2.0'
* checking installed package size ... INFO
  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   4.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'trtswitch-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ipcw
> ### Title: Inverse Probability of Censoring Weights (IPCW) for Treatment
> ###   Switching
> ### Aliases: ipcw
> 
> ### ** Examples
> 
> 
> # Example 1: pooled logistic regression switching model
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(trtswitch)
  > 
  > test_check("trtswitch")
  [ FAIL 12 | WARN 70 | SKIP 0 | PASS 37 ]
  
  == Failed tests ================================================================
  -- Error ('test-ipcw.R:1:1'): (code run outside of `test_that()`) --------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-ipcw.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-ipe.R:1:1'): (code run outside of `test_that()`) ---------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-ipe.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-liferegr.R:1:1'): (code run outside of `test_that()`) ----------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-liferegr.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-msm.R:1:1'): (code run outside of `test_that()`) ---------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-msm.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-phregr.R:1:1'): (code run outside of `test_that()`) ------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-phregr.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-residuals_liferegr.R:1:1'): (code run outside of `test_that()`) --
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-residuals_liferegr.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-residuals_phregr.R:1:1'): (code run outside of `test_that()`) --
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-residuals_phregr.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-rmest.R:1:1'): (code run outside of `test_that()`) -------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-rmest.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-rpsftm.R:1:1'): (code run outside of `test_that()`) ------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-rpsftm.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-survfit_phregr.R:1:1'): (code run outside of `test_that()`) ----
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-survfit_phregr.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-tsegest.R:1:1'): (code run outside of `test_that()`) -----------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-tsegest.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-tsesimp.R:1:1'): (code run outside of `test_that()`) -----------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-tsesimp.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  
  [ FAIL 12 | WARN 70 | SKIP 0 | PASS 37 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'ipcw.Rmd' using rmarkdown

Quitting from ipcw.Rmd:17-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ipcw.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'ipcw.Rmd'

--- re-building 'ipe.Rmd' using rmarkdown

Quitting from ipe.Rmd:17-22 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ipe.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'ipe.Rmd'

--- re-building 'msm.Rmd' using rmarkdown

Quitting from msm.Rmd:17-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'msm.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'msm.Rmd'

--- re-building 'rpsftm.Rmd' using rmarkdown

Quitting from rpsftm.Rmd:17-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rpsftm.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'rpsftm.Rmd'

--- re-building 'tsegest.Rmd' using rmarkdown

Quitting from tsegest.Rmd:17-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tsegest.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'tsegest.Rmd'

--- re-building 'tsesimp.Rmd' using rmarkdown

Quitting from tsesimp.Rmd:17-20 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tsesimp.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'tsesimp.Rmd'

SUMMARY: processing the following files failed:
  'ipcw.Rmd' 'ipe.Rmd' 'msm.Rmd' 'rpsftm.Rmd' 'tsegest.Rmd'
  'tsesimp.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs
See
  '/tmp/th798/25892271/R-devel/1541/trtswitch.Rcheck/00check.log'
for details.

[1] "2025-12-14 01:33:10 MST"
[1] "2025-12-14 01:33:10 MST"
Installing package into '/tmp/th798/25892271/R-devel/1541/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.17.99'
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollapply.c -o frollapply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mergelist.c -o mergelist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shellsort.c -o shellsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/25892271/R-devel/1541/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-12-14 01:33:31 MST"
* using log directory '/tmp/th798/25892271/R-devel/1541/trtswitch.Rcheck'
* using R Under development (unstable) (2025-12-13 r89166)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'trtswitch/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'trtswitch' version '0.2.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'trtswitch' can be installed ... OK
* used C++ compiler: 'g++ (Spack GCC) 12.2.0'
* checking installed package size ... INFO
  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    libs   4.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'trtswitch-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ipcw
> ### Title: Inverse Probability of Censoring Weights (IPCW) for Treatment
> ###   Switching
> ### Aliases: ipcw
> 
> ### ** Examples
> 
> 
> # Example 1: pooled logistic regression switching model
> library(dplyr)
Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(trtswitch)
  > 
  > test_check("trtswitch")
  [ FAIL 12 | WARN 70 | SKIP 0 | PASS 37 ]
  
  == Failed tests ================================================================
  -- Error ('test-ipcw.R:1:1'): (code run outside of `test_that()`) --------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-ipcw.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-ipe.R:1:1'): (code run outside of `test_that()`) ---------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-ipe.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-liferegr.R:1:1'): (code run outside of `test_that()`) ----------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-liferegr.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-msm.R:1:1'): (code run outside of `test_that()`) ---------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-msm.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-phregr.R:1:1'): (code run outside of `test_that()`) ------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-phregr.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-residuals_liferegr.R:1:1'): (code run outside of `test_that()`) --
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-residuals_liferegr.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-residuals_phregr.R:1:1'): (code run outside of `test_that()`) --
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-residuals_phregr.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-rmest.R:1:1'): (code run outside of `test_that()`) -------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-rmest.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-rpsftm.R:1:1'): (code run outside of `test_that()`) ------------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-rpsftm.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-survfit_phregr.R:1:1'): (code run outside of `test_that()`) ----
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-survfit_phregr.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-tsegest.R:1:1'): (code run outside of `test_that()`) -----------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-tsegest.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  -- Error ('test-tsesimp.R:1:1'): (code run outside of `test_that()`) -----------
  Error: package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
   unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Backtrace:
      x
   1. \-base::library(dplyr, warn.conflicts = FALSE) at test-tsesimp.R:1:1
   2.   \-base::tryCatch(...)
   3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
   4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   5.         \-value[[3L]](cond)
  
  [ FAIL 12 | WARN 70 | SKIP 0 | PASS 37 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'ipcw.Rmd' using rmarkdown

Quitting from ipcw.Rmd:17-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ipcw.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'ipcw.Rmd'

--- re-building 'ipe.Rmd' using rmarkdown

Quitting from ipe.Rmd:17-22 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ipe.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'ipe.Rmd'

--- re-building 'msm.Rmd' using rmarkdown

Quitting from msm.Rmd:17-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'msm.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'msm.Rmd'

--- re-building 'rpsftm.Rmd' using rmarkdown

Quitting from rpsftm.Rmd:17-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rpsftm.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'rpsftm.Rmd'

--- re-building 'tsegest.Rmd' using rmarkdown

Quitting from tsegest.Rmd:17-21 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tsegest.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'tsegest.Rmd'

--- re-building 'tsesimp.Rmd' using rmarkdown

Quitting from tsesimp.Rmd:17-20 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. \-tools:::.buildOneVignette(...)
  2.   +-base::tryCatch(...)
  3.   | \-base (local) tryCatchList(expr, classes, parentenv, handlers)
  4.   |   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  5.   |     \-base (local) doTryCatch(return(expr), name, parentenv, handler)
  6.   \-engine$weave(file, quiet = quiet, encoding = enc)
  7.     \-knitr:::vweave_rmarkdown(...)
  8.       \-rmarkdown::render(...)
  9.         \-knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
 10.           \-knitr:::process_file(text, output)
 11.             +-xfun:::handle_error(...)
 12.             +-base::withCallingHandlers(...)
 13.             \-knitr:::process_group(group)
 14.               \-knitr:::call_block(x)
 15.                 \-knitr:::block_exec(params)
 16.                   \-knitr:::eng_r(options)
 17.                     +-knitr:::in_input_dir(...)
 18.                     | \-knitr:::in_dir(input_dir(), expr)
 19.                     \-knitr (local) evaluate(...)
 20.                       \-evaluate::evaluate(...)
 21.                         \-base::withRestarts(...)
 22.                           \-base (local) withRestartList(expr, restarts)
 23.                             \-base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
 24.                               \-base (local) docall(restart$handler, restartArgs)
 25.                                 +-base::do.call("fun", lapply(args, enquote))
 26.                                 \-evaluate (local) fun(base::quote(`<S3: simpleError>`))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'tsesimp.Rmd' failed with diagnostics:
package or namespace load failed for 'dplyr' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'tsesimp.Rmd'

SUMMARY: processing the following files failed:
  'ipcw.Rmd' 'ipe.Rmd' 'msm.Rmd' 'rpsftm.Rmd' 'tsegest.Rmd'
  'tsesimp.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs
See
  '/tmp/th798/25892271/R-devel/1541/trtswitch.Rcheck/00check.log'
for details.

[1] "2025-12-14 01:35:37 MST"
> system(paste(c("diff -u", Rcheck.list), collapse=" "))
> library(data.table, lib.loc=R.home("library"))
Error: package or namespace load failed for 'data.table' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so':
  /projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so: undefined symbol: Rf_GetOption
Execution halted
WARNING: ignoring environment value of R_HOME

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> cargs <- commandArgs(trailingOnly=TRUE)
> if(length(cargs)==0){
+   ## before running interactively, make sure to start emacs/R with
+   ## environment defined in /scratch/...check_one.sh, particularly
+   ## R_LIBS_USER=/tmp/... otherwise we get error when installing
+   ## data.table.
+   base <- "/scratch/th798/data.table-revdeps/*"
+   cargs <- c(
+     Sys.glob(file.path(base,"deps.csv")),
+     "349",
+     Sys.glob(file.path(base, "data.table_release_*tar.gz")),
+     Sys.glob(file.path(base, "data.table_master_*tar.gz"))
+   )
+ }
> names(cargs) <- c("deps.csv", "task.str", "release", "master")
> dput(cargs)
c(deps.csv = "/scratch/th798/data.table-revdeps/2025-12-14/deps.csv", 
task.str = "1541", release = "/scratch/th798/data.table-revdeps/2025-12-14/data.table_release_1.17.8.tar.gz", 
master = "/scratch/th798/data.table-revdeps/2025-12-14/data.table_master_1.17.99.6329d94b83b72bb1f05dc2a10374e84a61ff950d.tar.gz"
)
> (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers
[1] "/tmp/th798/25892271/R-release/1541"
> if(requireNamespace("R.cache"))R.cache::getCachePath()
Loading required namespace: R.cache
[1] "/tmp/th798/25892271/R-release/1541/R.cache"
> task.id <- as.integer(cargs[["task.str"]])
> deps.df <- read.csv(cargs[["deps.csv"]])
> (rev.dep <- deps.df$Package[task.id])
[1] "trtswitch"
> job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id)
> setwd(task.dir)
> .libPaths()
[1] "/tmp/th798/25892271/R-release/1541/library"
[2] "/projects/genomic-ml/R/R-release/library"  
> options(repos=c(#this should be in ~/.Rprofile too.
+   CRAN="http://cloud.r-project.org"))
> print(Sys.time())
[1] "2025-12-14 01:35:42 MST"
> install.time <- system.time({
+   install.packages(rev.dep, dep=TRUE)
+ })
Installing package into '/tmp/th798/25892271/R-release/1541/library'
(as 'lib' is unspecified)
also installing the dependencies 'gtable', 'S7', 'scales', 'ggplot2', 'cowplot'

trying URL 'http://cloud.r-project.org/src/contrib/gtable_0.3.6.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/S7_0.2.1.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/scales_1.4.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/ggplot2_4.0.1.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/cowplot_1.2.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/trtswitch_0.2.2.tar.gz'
* installing *source* package 'gtable' ...
** this is package 'gtable' version '0.3.6'
** package 'gtable' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gtable)
* installing *source* package 'S7' ...
** this is package 'S7' version '0.2.1'
** package 'S7' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c method-dispatch.c -o method-dispatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c prop.c -o prop.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o S7.so init.o method-dispatch.o prop.o
installing to /tmp/th798/25892271/R-release/1541/library/00LOCK-S7/00new/S7/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (S7)
* installing *source* package 'scales' ...
** this is package 'scales' version '1.4.0'
** package 'scales' successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scales)
* installing *source* package 'ggplot2' ...
** this is package 'ggplot2' version '4.0.1'
** package 'ggplot2' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggplot2)
* installing *source* package 'cowplot' ...
** this is package 'cowplot' version '1.2.0'
** package 'cowplot' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cowplot)
* installing *source* package 'trtswitch' ...
** this is package 'trtswitch' version '0.2.2'
** package 'trtswitch' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RcppExports.cpp -o RcppExports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c ipcw.cpp -o ipcw.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c ipe.cpp -o ipe.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c logistic_regression.cpp -o logistic_regression.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c msm.cpp -o msm.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG  -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c recensor_sim_rpsftm.cpp -o recensor_sim_rpsftm.o
recensor_sim_rpsftm.cpp: In function 'Rcpp::DataFrame recensor_sim_rpsftm(int, int, double, double, double, double, double, double, double, double, double, double, double, double, double, int, bool, bool, double, std::string, double, bool, int, int)':
recensor_sim_rpsftm.cpp:666:39: error: no matching function for call to 'Rcpp::DataFrame_Impl<Rcpp::PreserveStorage>::create(Rcpp::traits::named_object<int>, Rcpp::traits::named_object<bool>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>, Rcpp::traits::named_object<double>)'
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
In file included from /projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/DataFrame.h:121,
                 from /projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp.h:57,
                 from utilities.h:1,
                 from recensor_sim_rpsftm.cpp:1:
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:28:23: note: candidate: 'template<class T1> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&) [with StoragePolicy = Rcpp::PreserveStorage]'
   28 | static DataFrame_Impl create( const T1& t1 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:28:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 1 argument, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:34:23: note: candidate: 'template<class T1, class T2> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&) [with T2 = T1; StoragePolicy = Rcpp::PreserveStorage]'
   34 | static DataFrame_Impl create( const T1& t1, const T2& t2 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:34:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 2 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:40:23: note: candidate: 'template<class T1, class T2, class T3> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&) [with T2 = T1; T3 = T2; StoragePolicy = Rcpp::PreserveStorage]'
   40 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:40:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 3 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:46:23: note: candidate: 'template<class T1, class T2, class T3, class T4> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&) [with T2 = T1; T3 = T2; T4 = T3; StoragePolicy = Rcpp::PreserveStorage]'
   46 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:46:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 4 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:52:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; StoragePolicy = Rcpp::PreserveStorage]'
   52 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:52:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 5 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:58:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; StoragePolicy = Rcpp::PreserveStorage]'
   58 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:58:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 6 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:64:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; StoragePolicy = Rcpp::PreserveStorage]'
   64 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:64:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 7 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:70:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; StoragePolicy = Rcpp::PreserveStorage]'
   70 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:70:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 8 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:76:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; StoragePolicy = Rcpp::PreserveStorage]'
   76 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:76:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 9 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:82:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; StoragePolicy = Rcpp::PreserveStorage]'
   82 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:82:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 10 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:88:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10, class T11> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&, const T11&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; T11 = T10; StoragePolicy = Rcpp::PreserveStorage]'
   88 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10, const T11& t11 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:88:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 11 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:94:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10, class T11, class T12> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&, const T11&, const T12&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; T11 = T10; T12 = T11; StoragePolicy = Rcpp::PreserveStorage]'
   94 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10, const T11& t11, const T12& t12 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:94:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 12 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:100:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10, class T11, class T12, class T13> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&, const T11&, const T12&, const T13&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; T11 = T10; T12 = T11; T13 = T12; StoragePolicy = Rcpp::PreserveStorage]'
  100 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10, const T11& t11, const T12& t12, const T13& t13 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:100:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 13 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:106:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10, class T11, class T12, class T13, class T14> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&, const T11&, const T12&, const T13&, const T14&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; T11 = T10; T12 = T11; T13 = T12; T14 = T13; StoragePolicy = Rcpp::PreserveStorage]'
  106 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10, const T11& t11, const T12& t12, const T13& t13, const T14& t14 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:106:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 14 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:112:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10, class T11, class T12, class T13, class T14, class T15> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&, const T11&, const T12&, const T13&, const T14&, const T15&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; T11 = T10; T12 = T11; T13 = T12; T14 = T13; T15 = T14; StoragePolicy = Rcpp::PreserveStorage]'
  112 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10, const T11& t11, const T12& t12, const T13& t13, const T14& t14, const T15& t15 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:112:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 15 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:118:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10, class T11, class T12, class T13, class T14, class T15, class T16> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&, const T11&, const T12&, const T13&, const T14&, const T15&, const T16&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; T11 = T10; T12 = T11; T13 = T12; T14 = T13; T15 = T14; T16 = T15; StoragePolicy = Rcpp::PreserveStorage]'
  118 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10, const T11& t11, const T12& t12, const T13& t13, const T14& t14, const T15& t15, const T16& t16 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:118:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 16 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:124:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10, class T11, class T12, class T13, class T14, class T15, class T16, class T17> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&, const T11&, const T12&, const T13&, const T14&, const T15&, const T16&, const T17&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; T11 = T10; T12 = T11; T13 = T12; T14 = T13; T15 = T14; T16 = T15; T17 = T16; StoragePolicy = Rcpp::PreserveStorage]'
  124 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10, const T11& t11, const T12& t12, const T13& t13, const T14& t14, const T15& t15, const T16& t16, const T17& t17 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:124:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 17 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:130:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10, class T11, class T12, class T13, class T14, class T15, class T16, class T17, class T18> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&, const T11&, const T12&, const T13&, const T14&, const T15&, const T16&, const T17&, const T18&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; T11 = T10; T12 = T11; T13 = T12; T14 = T13; T15 = T14; T16 = T15; T17 = T16; T18 = T17; StoragePolicy = Rcpp::PreserveStorage]'
  130 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10, const T11& t11, const T12& t12, const T13& t13, const T14& t14, const T15& t15, const T16& t16, const T17& t17, const T18& t18 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:130:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 18 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:136:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10, class T11, class T12, class T13, class T14, class T15, class T16, class T17, class T18, class T19> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&, const T11&, const T12&, const T13&, const T14&, const T15&, const T16&, const T17&, const T18&, const T19&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; T11 = T10; T12 = T11; T13 = T12; T14 = T13; T15 = T14; T16 = T15; T17 = T16; T18 = T17; T19 = T18; StoragePolicy = Rcpp::PreserveStorage]'
  136 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10, const T11& t11, const T12& t12, const T13& t13, const T14& t14, const T15& t15, const T16& t16, const T17& t17, const T18& t18, const T19& t19 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:136:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 19 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:142:23: note: candidate: 'template<class T1, class T2, class T3, class T4, class T5, class T6, class T7, class T8, class T9, class T10, class T11, class T12, class T13, class T14, class T15, class T16, class T17, class T18, class T19, class T20> static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create(const T1&, const T2&, const T3&, const T4&, const T5&, const T6&, const T7&, const T8&, const T9&, const T10&, const T11&, const T12&, const T13&, const T14&, const T15&, const T16&, const T17&, const T18&, const T19&, const T20&) [with T2 = T1; T3 = T2; T4 = T3; T5 = T4; T6 = T5; T7 = T6; T8 = T7; T9 = T8; T10 = T9; T11 = T10; T12 = T11; T13 = T12; T14 = T13; T15 = T14; T16 = T15; T17 = T16; T18 = T17; T19 = T18; T20 = T19; StoragePolicy = Rcpp::PreserveStorage]'
  142 | static DataFrame_Impl create( const T1& t1, const T2& t2, const T3& t3, const T4& t4, const T5& t5, const T6& t6, const T7& t7, const T8& t8, const T9& t9, const T10& t10, const T11& t11, const T12& t12, const T13& t13, const T14& t14, const T15& t15, const T16& t16, const T17& t17, const T18& t18, const T19& t19, const T20& t20 ) {
      |                       ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/generated/DataFrame_generated.h:142:23: note:   template argument deduction/substitution failed:
recensor_sim_rpsftm.cpp:666:39: note:   candidate expects 20 arguments, 30 provided
  666 |   DataFrame result = DataFrame::create(
      |                      ~~~~~~~~~~~~~~~~~^
  667 |     Named("recensor_type") = recensor_type,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  668 |     Named("admin_recensor_only") = admin_recensor_only,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  669 |     Named("p_event_1") = p_event_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  670 |     Named("p_dropout_1") = p_dropout_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  671 |     Named("p_admin_censor_1") = p_admin_censor_1,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  672 |     Named("p_event_0") = p_event_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  673 |     Named("p_dropout_0") = p_dropout_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  674 |     Named("p_admin_censor_0") = p_admin_censor_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  675 |     Named("p_pd_0") = p_pd_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  676 |     Named("p_swtrt_0") = p_swtrt_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  677 |     Named("p_recensored_0") = p_recensored_0,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  678 |     Named("psi") = psi,
      |     ~~~~~~~~~~~~~~~~~~~                
  679 |     Named("psi_est") = psi_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  680 |     Named("psi_bias") = psi_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  681 |     Named("psi_se") = psi_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  682 |     Named("psi_mse") = psi_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~        
  683 |     Named("loghr") = loghr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~            
  684 |     Named("loghr_est") = loghr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  685 |     Named("loghr_bias") = loghr_bias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  686 |     Named("loghr_se") = loghr_se,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
  687 |     Named("loghr_mse") = loghr_mse,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~    
  688 |     Named("hr") = hr,
      |     ~~~~~~~~~~~~~~~~~                  
  689 |     Named("hr_est") = hr_est,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~          
  690 |     Named("hr_pctbias") = hr_pctbias,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  
  691 |     Named("loghr_se_cox") = loghr_se_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  692 |     Named("loghr_se_lr") = loghr_se_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  693 |     Named("loghr_se_boot") = loghr_se_boot,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  694 |     Named("hr_ci_cover_cox") = hr_ci_cover_cox,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |     Named("hr_ci_cover_lr") = hr_ci_cover_lr,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  696 |     Named("hr_ci_cover_boot") = hr_ci_cover_boot
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  697 |   );
      |   ~                                    
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/DataFrame.h:117:31: note: candidate: 'static Rcpp::DataFrame_Impl<StoragePolicy> Rcpp::DataFrame_Impl<StoragePolicy>::create() [with StoragePolicy = Rcpp::PreserveStorage]'
  117 |         static DataFrame_Impl create(){
      |                               ^~~~~~
/projects/genomic-ml/R/R-release/library/Rcpp/include/Rcpp/DataFrame.h:117:31: note:   candidate expects 0 arguments, 30 provided
make: *** [/home/th798/R/R-release/etc/Makeconf:211: recensor_sim_rpsftm.o] Error 1
ERROR: compilation failed for package 'trtswitch'
* removing '/tmp/th798/25892271/R-release/1541/library/trtswitch'

The downloaded source packages are in
	'/tmp/th798/25892271/RtmpgOWYwZ/downloaded_packages'
Warning message:
In install.packages(rev.dep, dep = TRUE) :
  installation of package 'trtswitch' had non-zero exit status
> cat("Time to install revdep:\n")
Time to install revdep:
> print(install.time)
   user  system elapsed 
 78.203   3.963  86.877 
> print(Sys.time())
[1] "2025-12-14 01:37:09 MST"
> downloaded_packages <- file.path(
+   tempdir(),
+   "downloaded_packages")
> dl.glob <- file.path(
+   downloaded_packages,
+   paste0(rev.dep,"_*.tar.gz"))
> rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob))
> colnames(rev.dep.dl.row) <- c("pkg","path")
> rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE)
> pkg.Rcheck <- paste0(rev.dep, ".Rcheck")
> 
> proj.dir <- "~/genomic-ml/data.table-revdeps"
> source(file.path(proj.dir, "myStatus.R"))
> Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]]))
> dir.create(Rvers, showWarnings=FALSE)
> Rcheck.list <- list()
> for(dt.version.short in c("release", "master")){
+   dt.tar.gz <- cargs[[dt.version.short]]
+   dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz)
+   print(Sys.time())
+   install.packages(dt.tar.gz, repos=NULL)
+   print(Sys.time())
+   check.cmd <- get_check_cmd(rev.dep.release.tar.gz)
+   system(check.cmd)
+   print(Sys.time())
+   dest.Rcheck <- file.path(
+     Rvers,
+     paste0(dt.version, ".Rcheck"))
+   unlink(dest.Rcheck, recursive=TRUE)
+   file.rename(pkg.Rcheck, dest.Rcheck)
+   Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log")
+ }
[1] "2025-12-14 01:37:09 MST"
Installing package into '/tmp/th798/25892271/R-release/1541/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.17.8'
** package 'data.table' successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/25892271/R-release/1541/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-12-14 01:37:28 MST"
* using log directory '/tmp/th798/25892271/R-release/1541/trtswitch.Rcheck'
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'trtswitch/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'trtswitch' version '0.2.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'trtswitch' can be installed ... ERROR
Installation failed.
See '/tmp/th798/25892271/R-release/1541/trtswitch.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  '/tmp/th798/25892271/R-release/1541/trtswitch.Rcheck/00check.log'
for details.

[1] "2025-12-14 01:37:57 MST"
[1] "2025-12-14 01:37:57 MST"
Installing package into '/tmp/th798/25892271/R-release/1541/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.17.99'
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollapply.c -o frollapply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mergelist.c -o mergelist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shellsort.c -o shellsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/25892271/R-release/1541/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2025-12-14 01:38:18 MST"
* using log directory '/tmp/th798/25892271/R-release/1541/trtswitch.Rcheck'
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'trtswitch/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'trtswitch' version '0.2.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'trtswitch' can be installed ... ERROR
Installation failed.
See '/tmp/th798/25892271/R-release/1541/trtswitch.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  '/tmp/th798/25892271/R-release/1541/trtswitch.Rcheck/00check.log'
for details.

[1] "2025-12-14 01:38:46 MST"
> system(paste(c("diff -u", Rcheck.list), collapse=" "))
> library(data.table, lib.loc=R.home("library"))
> (sig.diff.dt <- myDiff(Rvers))
Key: <checking>
Empty data.table (0 rows and 3 cols): checking,master,release
> 
> ## If there are significant differences, use git bisect to find when
> ## they started.
> if(nrow(sig.diff.dt)){
+   dt.git <- file.path(task.dir, "data.table.git")
+   unlink(dt.git, recursive=TRUE, force=TRUE)
+   system(paste("cd ~/R/data.table && git fetch --tags"))
+   system(paste("git clone ~/R/data.table", dt.git))
+   release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]])
+   rev.parse.cmd <- paste(
+     "cd", dt.git, "&& git rev-parse master")
+   master.sha <- system(rev.parse.cmd, intern=TRUE)
+   merge.base.cmd <- paste(
+     "cd", dt.git, "&& git merge-base master", release.tag)
+   merge.base.sha <- system(merge.base.cmd, intern=TRUE)
+   old.sha <- merge.base.sha
+   run_R <- file.path(proj.dir, "install_dt_then_check_dep.R")
+   sig.diff.dt[, first.bad.commit := NA_character_]
+   sig.diff.dt[, comments := NA_character_]
+   for(diff.i in 1:nrow(sig.diff.dt)){
+     sig.diff.row <- sig.diff.dt[diff.i]
+     bisect.cmd <- paste(
+       "cd", dt.git, "&&",
+       "git bisect start &&",
+       "git bisect old", old.sha, "&&",
+       "git bisect new master &&",
+       "git bisect run",
+       R.home('bin/Rscript'),
+       run_R,
+       shQuote(sig.diff.row$checking),
+       sig.diff.row$release,
+       rev.dep.release.tar.gz,
+       release.tag)
+     print(bisect.cmd)
+     bisect.out <- system(bisect.cmd, intern=TRUE)
+     cat(bisect.out,sep="\n")
+     if(is.null(attr(bisect.out,"status"))){
+       first.bad.sha <- nc::capture_all_str(
+         bisect.out,
+         sha="[0-9a-f]+",
+         " is the first new commit")$sha
+       parent.cmd <- paste(
+         "cd ~/R/data.table && git log --pretty=%P -n 1",
+         first.bad.sha)
+       parent.sha <- system(parent.cmd, intern=TRUE)
+       sig.diff.dt[diff.i, first.bad.commit := first.bad.sha]
+       parent.msg <- paste0("parent=", parent.sha)
+       this.comment <- if(parent.sha==old.sha){
+         paste(parent.msg, "same as git bisect old")
+       }else if(first.bad.sha==master.sha){
+         paste("same as git bisect new=master,", parent.msg)
+       }else{
+         parent.msg
+       }
+       sig.diff.dt[diff.i, comments := this.comment]
+     }
+   }
+   ## add CRAN column.
+   sig.diff.dt[, CRAN := {
+     flavor <- get_flavor(Rvers)
+     details <- data.table(flavor=unique(flavor))[, {
+       base <- "https://www.r-project.org/nosvn/R.check/"
+       u <- paste0(base, flavor, "/", rev.dep, "-00check.txt")
+       check.txt <- tempfile()
+       tryCatch({
+         download.file(u, check.txt, quiet=TRUE)
+       }, error=function(e){
+         NULL
+       })
+       check.lines <- if(file.exists(check.txt)){
+         readLines(check.txt,encoding="UTF-8")
+       }else{
+         ""
+       }
+       repl.lines <- gsub("[\u2018\u2019]", "'", check.lines)
+       ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C.
+       myStatus(line.vec=repl.lines)
+     }, by=flavor]
+     select.dt <- data.table(flavor, checking)
+     details[select.dt, msg, on=.(flavor, checking)]
+   }]
+   dir.create(file.path(job.dir, Rvers))
+   diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv")
+   data.table::fwrite(sig.diff.dt, diffs.csv)
+   print(sig.diff.dt)
+ }
>