Note: the module "R" cannot be unloaded because it was not loaded. WARNING: ignoring environment value of R_HOME R Under development (unstable) (2025-12-14 r89168) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-12-15/deps.csv", task.str = "1136", release = "/scratch/th798/data.table-revdeps/2025-12-15/data.table_release_1.17.8.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-12-15/data.table_master_1.17.99.4f8695fa560beaa7d7d8034ee41fa6146e2998b5.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/25909878/R-devel/1136" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/25909878/R-devel/1136/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "quickcheck" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/25909878/R-devel/1136/library" [2] "/projects/genomic-ml/R/R-devel/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-12-15 00:36:16 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/25909878/R-devel/1136/library' (as 'lib' is unspecified) also installing the dependencies 'xfun', 'yaml', 'hedgehog', 'knitr', 'rmarkdown', 'covr' trying URL 'http://cloud.r-project.org/src/contrib/xfun_0.54.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/yaml_2.3.12.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/hedgehog_0.2.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/knitr_1.50.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/rmarkdown_2.30.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/covr_3.6.5.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/quickcheck_0.1.3.tar.gz' * installing *source* package 'xfun' ... ** this is package 'xfun' version '0.54' ** package 'xfun' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c base64.c -o base64.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rand_lcg.c -o rand_lcg.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o xfun.so base64.o init.o rand_lcg.o installing to /tmp/th798/25909878/R-devel/1136/library/00LOCK-xfun/00new/xfun/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xfun) * installing *source* package 'yaml' ... ** this is package 'yaml' version '2.3.12' ** package 'yaml' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c api.c -o api.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dumper.c -o dumper.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c emitter.c -o emitter.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c implicit.c -o implicit.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c loader.c -o loader.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c parser.c -o parser.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c r_emit.c -o r_emit.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c r_ext.c -o r_ext.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c r_parse.c -o r_parse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reader.c -o reader.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c scanner.c -o scanner.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c writer.c -o writer.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o installing to /tmp/th798/25909878/R-devel/1136/library/00LOCK-yaml/00new/yaml/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yaml) * installing *source* package 'hedgehog' ... ** this is package 'hedgehog' version '0.2' ** package 'hedgehog' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hedgehog) * installing *source* package 'knitr' ... ** this is package 'knitr' version '1.50' ** package 'knitr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitr) * installing *source* package 'covr' ... ** this is package 'covr' version '3.6.5' ** package 'covr' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reassign.c -o reassign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o covr.so reassign.o installing to /tmp/th798/25909878/R-devel/1136/library/00LOCK-covr/00new/covr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (covr) * installing *source* package 'quickcheck' ... ** this is package 'quickcheck' version '0.1.3' ** package 'quickcheck' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to 'sqrt' ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quickcheck) * installing *source* package 'rmarkdown' ... ** this is package 'rmarkdown' version '2.30' ** package 'rmarkdown' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmarkdown) The downloaded source packages are in '/tmp/th798/25909878/RtmpkMRfGf/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 43.566 3.698 55.573 > print(Sys.time()) [1] "2025-12-15 00:37:12 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-12-15 00:37:12 MST" Installing package into '/tmp/th798/25909878/R-devel/1136/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.8' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/25909878/R-devel/1136/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-12-15 00:37:36 MST" * using log directory '/tmp/th798/25909878/R-devel/1136/quickcheck.Rcheck' * using R Under development (unstable) (2025-12-14 r89168) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'quickcheck/DESCRIPTION' ... OK * this is package 'quickcheck' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'quickcheck' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ERROR Running examples in 'quickcheck-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: any_data.table > ### Title: Any data.table generator > ### Aliases: any_data.table > > ### ** Examples > > any_data.table(rows = 3L, cols = 3L) %>% show_example() Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Calls: %>% ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(quickcheck) > test_check("quickcheck") [ FAIL 49 | WARN 833 | SKIP 0 | PASS 414 ] == Failed tests ================================================================ -- Error ('test-any_data-table.R:1:1'): generator can generate empty data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-any_data-table.R:1:1'): generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-any_data-table.R:1:1'): generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 0 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-any_data-table.R:1:1'): generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 5 $max [1] 9 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-any_data_frame.R:1:1'): generator can generate empty data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-any_data_frame.R:1:1'): generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-any_data_frame.R:1:1'): generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 1 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-any_data_frame.R:1:1'): generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 4 $max [1] 6 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-any_tibble.R:1:1'): generator can generate empty data frames --- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.map(m, tree) 15. | \-quickcheck (local) f(x$root) 16. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 17. | \-base::withCallingHandlers(...) 18. \-base::loadNamespace(x) 19. +-base::namespaceImportFrom(...) 20. | \-base::asNamespace(ns) 21. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. \-base::library.dynam(lib, package, package.lib) 26. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-any_tibble.R:1:1'): generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.map(m, tree) 15. | \-quickcheck (local) f(x$root) 16. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 17. | \-base::withCallingHandlers(...) 18. \-base::loadNamespace(x) 19. +-base::namespaceImportFrom(...) 20. | \-base::asNamespace(ns) 21. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. \-base::library.dynam(lib, package, package.lib) 26. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-any_tibble.R:1:1'): generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 4 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-any_tibble.R:1:1'): generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 3 $max [1] 5 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-anything.R:2:3'): anything generates data frames, vectors, or undefined values -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-anything.R:2:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.bind(...) 15. | \-hedgehog (local) f(x$root) 16. | \-hedgehog::gen.run(f(x), size) 17. | \-hedgehog:::unfoldgenerator(generator, size) 18. | \-generator$unGen(size) 19. | \-hedgehog:::tree.map(m, tree) 20. | \-quickcheck (local) f(x$root) 21. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 22. | \-base::withCallingHandlers(...) 23. \-base::loadNamespace(x) 24. +-base::namespaceImportFrom(...) 25. | \-base::asNamespace(ns) 26. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 27. +-base::namespaceImportFrom(...) 28. | \-base::asNamespace(ns) 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 30. \-base::library.dynam(lib, package, package.lib) 31. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-anything.R:10:3'): anything can exclude empty vectors and data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-anything.R:10:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.bind(...) 15. | \-hedgehog (local) f(x$root) 16. | \-hedgehog::gen.run(f(x), size) 17. | \-hedgehog:::unfoldgenerator(generator, size) 18. | \-generator$unGen(size) 19. | \-hedgehog:::tree.map(m, tree) 20. | \-quickcheck (local) f(x$root) 21. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 22. | \-base::withCallingHandlers(...) 23. \-base::loadNamespace(x) 24. +-base::namespaceImportFrom(...) 25. | \-base::asNamespace(ns) 26. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 27. +-base::namespaceImportFrom(...) 28. | \-base::asNamespace(ns) 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 30. \-base::library.dynam(lib, package, package.lib) 31. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-anything.R:18:3'): anything can exclude undefined values ------- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-anything.R:18:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.bind(...) 15. | \-hedgehog (local) f(x$root) 16. | \-hedgehog::gen.run(f(x), size) 17. | \-hedgehog:::unfoldgenerator(generator, size) 18. | \-generator$unGen(size) 19. | \-hedgehog:::tree.map(m, tree) 20. | \-quickcheck (local) f(x$root) 21. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 22. | \-base::withCallingHandlers(...) 23. \-base::loadNamespace(x) 24. +-base::namespaceImportFrom(...) 25. | \-base::asNamespace(ns) 26. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 27. +-base::namespaceImportFrom(...) 28. | \-base::asNamespace(ns) 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 30. \-base::library.dynam(lib, package, package.lib) 31. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data-table.R:1:1'): generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data-table.R:1:1'): single_col_generator can generate empty data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data-table.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-data-table.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $rows [1] 3 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-data-table.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 2 $max [1] 5 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-data-table_of.R:1:1'): single_col_generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data-table_of.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-data-table_of.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 4 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-data-table_of.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 5 $max [1] 9 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-data_frame.R:1:1'): generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data_frame.R:1:1'): single_col_generator can generate empty data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data_frame.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-data_frame.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 5 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-data_frame.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 2 $max [1] 10 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-data_frame_of.R:1:1'): single_col_generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data_frame_of.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-data_frame_of.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 3 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-data_frame_of.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 2 $max [1] 5 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-list.R:24:3'): list_ maintains names --------------------------- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-list.R:24:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 12. | \-hedgehog (local) FUN(X[[i]], ...) 13. | \-hedgehog:::unfoldgenerator(g, size) 14. | \-generator$unGen(size) 15. | \-hedgehog:::tree.bind(...) 16. | \-hedgehog (local) f(x$root) 17. | \-hedgehog::gen.run(f(x), size) 18. | \-hedgehog:::unfoldgenerator(generator, size) 19. | \-generator$unGen(size) 20. | \-hedgehog::gen.run(g, size) 21. | \-hedgehog:::unfoldgenerator(generator, size) 22. | \-generator$unGen(size) 23. | \-hedgehog:::tree.bind(...) 24. | \-hedgehog (local) f(x$root) 25. | \-hedgehog::gen.run(f(x), size) 26. | \-hedgehog:::unfoldgenerator(generator, size) 27. | \-generator$unGen(size) 28. | \-hedgehog:::tree.map(m, tree) 29. | \-quickcheck (local) f(x$root) 30. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 31. | \-base::withCallingHandlers(...) 32. \-base::loadNamespace(x) 33. +-base::namespaceImportFrom(...) 34. | \-base::asNamespace(ns) 35. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 36. +-base::namespaceImportFrom(...) 37. | \-base::asNamespace(ns) 38. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 39. \-base::library.dynam(lib, package, package.lib) 40. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-list_of.R:1:1'): list_of_anything generates correct values ----- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog::gen.run(f(size), size) 13. | \-hedgehog:::unfoldgenerator(generator, size) 14. | \-generator$unGen(size) 15. | \-hedgehog:::tree.bind(...) 16. | \-hedgehog (local) f(x$root) 17. | \-hedgehog::gen.run(f(x), size) 18. | \-hedgehog:::unfoldgenerator(generator, size) 19. | \-generator$unGen(size) 20. | +-hedgehog:::tree.expand(shrinker, gen.run(g, size)) 21. | | \-hedgehog:::tree.check(x) 22. | \-hedgehog::gen.run(g, size) 23. | \-hedgehog:::unfoldgenerator(generator, size) 24. | \-generator$unGen(size) 25. | \-hedgehog:::tree.replicate(...) 26. | \-base::replicate(num, ma(), simplify = FALSE) 27. | \-base::sapply(...) 28. | \-base::lapply(X = X, FUN = FUN, ...) 29. | \-hedgehog (local) FUN(X[[i]], ...) 30. | \-hedgehog (local) ma() 31. | \-hedgehog::gen.run(generator, size) 32. | \-hedgehog:::unfoldgenerator(generator, size) 33. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 34. | \-hedgehog (local) FUN(X[[i]], ...) 35. | \-hedgehog:::unfoldgenerator(g, size) 36. | \-generator$unGen(size) 37. | \-hedgehog:::tree.bind(...) 38. | \-hedgehog (local) f(x$root) 39. | \-hedgehog::gen.run(f(x), size) 40. | \-hedgehog:::unfoldgenerator(generator, size) 41. | \-generator$unGen(size) 42. | \-hedgehog::gen.run(g, size) 43. | \-hedgehog:::unfoldgenerator(generator, size) 44. | \-generator$unGen(size) 45. | \-hedgehog:::tree.bind(...) 46. | \-hedgehog (local) f(x$root) 47. | \-hedgehog::gen.run(f(x), size) 48. | \-hedgehog:::unfoldgenerator(generator, size) 49. | \-generator$unGen(size) 50. | \-hedgehog:::tree.map(m, tree) 51. | \-quickcheck (local) f(x$root) 52. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 53. | \-base::withCallingHandlers(...) 54. \-base::loadNamespace(x) 55. +-base::namespaceImportFrom(...) 56. | \-base::asNamespace(ns) 57. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 58. +-base::namespaceImportFrom(...) 59. | \-base::asNamespace(ns) 60. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 61. \-base::library.dynam(lib, package, package.lib) 62. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-list_of.R:1:1'): list_of_anything can generate empty vectors --- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 12. | \-hedgehog (local) FUN(X[[i]], ...) 13. | \-hedgehog:::unfoldgenerator(g, size) 14. | \-generator$unGen(size) 15. | \-hedgehog:::tree.bind(...) 16. | \-hedgehog (local) f(x$root) 17. | \-hedgehog::gen.run(f(x), size) 18. | \-hedgehog:::unfoldgenerator(generator, size) 19. | \-generator$unGen(size) 20. | \-hedgehog::gen.run(g, size) 21. | \-hedgehog:::unfoldgenerator(generator, size) 22. | \-generator$unGen(size) 23. | \-hedgehog:::tree.bind(...) 24. | \-hedgehog (local) f(x$root) 25. | \-hedgehog::gen.run(f(x), size) 26. | \-hedgehog:::unfoldgenerator(generator, size) 27. | \-generator$unGen(size) 28. | \-hedgehog:::tree.map(m, tree) 29. | \-quickcheck (local) f(x$root) 30. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 31. | \-base::withCallingHandlers(...) 32. \-base::loadNamespace(x) 33. +-base::namespaceImportFrom(...) 34. | \-base::asNamespace(ns) 35. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 36. +-base::namespaceImportFrom(...) 37. | \-base::asNamespace(ns) 38. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 39. \-base::library.dynam(lib, package, package.lib) 40. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-list_of.R:1:1'): list_of_anything generates vectors with lengths between 1 and 10 inclusive -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog::gen.run(f(size), size) 13. | \-hedgehog:::unfoldgenerator(generator, size) 14. | \-generator$unGen(size) 15. | \-hedgehog:::tree.bind(...) 16. | \-hedgehog (local) f(x$root) 17. | \-hedgehog::gen.run(f(x), size) 18. | \-hedgehog:::unfoldgenerator(generator, size) 19. | \-generator$unGen(size) 20. | +-hedgehog:::tree.expand(shrinker, gen.run(g, size)) 21. | | \-hedgehog:::tree.check(x) 22. | \-hedgehog::gen.run(g, size) 23. | \-hedgehog:::unfoldgenerator(generator, size) 24. | \-generator$unGen(size) 25. | \-hedgehog:::tree.replicate(...) 26. | \-base::replicate(num, ma(), simplify = FALSE) 27. | \-base::sapply(...) 28. | \-base::lapply(X = X, FUN = FUN, ...) 29. | \-hedgehog (local) FUN(X[[i]], ...) 30. | \-hedgehog (local) ma() 31. | \-hedgehog::gen.run(generator, size) 32. | \-hedgehog:::unfoldgenerator(generator, size) 33. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 34. | \-hedgehog (local) FUN(X[[i]], ...) 35. | \-hedgehog:::unfoldgenerator(g, size) 36. | \-generator$unGen(size) 37. | \-hedgehog:::tree.bind(...) 38. | \-hedgehog (local) f(x$root) 39. | \-hedgehog::gen.run(f(x), size) 40. | \-hedgehog:::unfoldgenerator(generator, size) 41. | \-generator$unGen(size) 42. | \-hedgehog:::tree.bind(...) 43. | \-hedgehog (local) f(x$root) 44. | \-hedgehog::gen.run(f(x), size) 45. | \-hedgehog:::unfoldgenerator(generator, size) 46. | \-generator$unGen(size) 47. | \-hedgehog:::tree.map(m, tree) 48. | \-quickcheck (local) f(x$root) 49. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 50. | \-base::withCallingHandlers(...) 51. \-base::loadNamespace(x) 52. +-base::namespaceImportFrom(...) 53. | \-base::asNamespace(ns) 54. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 55. +-base::namespaceImportFrom(...) 56. | \-base::asNamespace(ns) 57. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 58. \-base::library.dynam(lib, package, package.lib) 59. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-list_of.R:1:1'): list_of_anything generates vectors of a specific length -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $len [1] 10 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-list_of.R:1:1'): list_of_anything generates vectors within a range of lengths -- Falsifiable after 1 tests, and 3 shrinks Counterexample: $min [1] 3 $max [1] 7 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-one_of.R:2:3'): one_of doesn't modify a single generator ------- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-one_of.R:2:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog::gen.run(g, size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.bind(...) 18. | \-hedgehog (local) f(x$root) 19. | \-hedgehog::gen.run(f(x), size) 20. | \-hedgehog:::unfoldgenerator(generator, size) 21. | \-generator$unGen(size) 22. | \-hedgehog:::tree.map(m, tree) 23. | \-quickcheck (local) f(x$root) 24. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 25. | \-base::withCallingHandlers(...) 26. \-base::loadNamespace(x) 27. +-base::namespaceImportFrom(...) 28. | \-base::asNamespace(ns) 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 30. +-base::namespaceImportFrom(...) 31. | \-base::asNamespace(ns) 32. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 33. \-base::library.dynam(lib, package, package.lib) 34. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-tibble.R:1:1'): generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.map(m, tree) 10. \-base::loadNamespace(x) 11. +-base::namespaceImportFrom(...) 12. | \-base::asNamespace(ns) 13. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. \-base::library.dynam(lib, package, package.lib) 18. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-tibble.R:1:1'): single_col_generator can generate empty data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.map(m, tree) 10. \-base::loadNamespace(x) 11. +-base::namespaceImportFrom(...) 12. | \-base::asNamespace(ns) 13. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. \-base::library.dynam(lib, package, package.lib) 18. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-tibble.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.map(m, tree) 10. \-base::loadNamespace(x) 11. +-base::namespaceImportFrom(...) 12. | \-base::asNamespace(ns) 13. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. \-base::library.dynam(lib, package, package.lib) 18. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-tibble.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $rows [1] 4 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-tibble.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 3 shrinks Counterexample: $min [1] 2 $max [1] 8 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-tibble_of.R:1:1'): single_col_generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.map(m, tree) 15. | \-quickcheck (local) f(x$root) 16. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 17. | \-base::withCallingHandlers(...) 18. \-base::loadNamespace(x) 19. +-base::namespaceImportFrom(...) 20. | \-base::asNamespace(ns) 21. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. \-base::library.dynam(lib, package, package.lib) 26. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-tibble_of.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.map(m, tree) 15. | \-quickcheck (local) f(x$root) 16. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 17. | \-base::withCallingHandlers(...) 18. \-base::loadNamespace(x) 19. +-base::namespaceImportFrom(...) 20. | \-base::asNamespace(ns) 21. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. \-base::library.dynam(lib, package, package.lib) 26. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-tibble_of.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 0 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-tibble_of.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 1 $max [1] 9 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) [ FAIL 49 | WARN 833 | SKIP 0 | PASS 414 ] Error: Test failures Execution halted * checking PDF version of manual ... OK * DONE Status: 2 ERRORs See '/tmp/th798/25909878/R-devel/1136/quickcheck.Rcheck/00check.log' for details. [1] "2025-12-15 00:43:07 MST" [1] "2025-12-15 00:43:07 MST" Installing package into '/tmp/th798/25909878/R-devel/1136/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.99' ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollapply.c -o frollapply.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mergelist.c -o mergelist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shellsort.c -o shellsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/25909878/R-devel/1136/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-12-15 00:43:36 MST" * using log directory '/tmp/th798/25909878/R-devel/1136/quickcheck.Rcheck' * using R Under development (unstable) (2025-12-14 r89168) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'quickcheck/DESCRIPTION' ... OK * this is package 'quickcheck' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'quickcheck' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ERROR Running examples in 'quickcheck-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: any_data.table > ### Title: Any data.table generator > ### Aliases: any_data.table > > ### ** Examples > > any_data.table(rows = 3L, cols = 3L) %>% show_example() Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Calls: %>% ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(quickcheck) > test_check("quickcheck") [ FAIL 50 | WARN 833 | SKIP 0 | PASS 412 ] == Failed tests ================================================================ -- Error ('test-any_data-table.R:1:1'): generator can generate empty data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-any_data-table.R:1:1'): generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-any_data-table.R:1:1'): generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 4 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-any_data-table.R:1:1'): generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 4 $max [1] 6 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-any_data_frame.R:1:1'): generator can generate empty data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-any_data_frame.R:1:1'): generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-any_data_frame.R:1:1'): generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 1 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-any_data_frame.R:1:1'): generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 0 $max [1] 10 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-any_tibble.R:1:1'): generator can generate empty data frames --- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.map(m, tree) 15. | \-quickcheck (local) f(x$root) 16. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 17. | \-base::withCallingHandlers(...) 18. \-base::loadNamespace(x) 19. +-base::namespaceImportFrom(...) 20. | \-base::asNamespace(ns) 21. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. \-base::library.dynam(lib, package, package.lib) 26. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-any_tibble.R:1:1'): generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.map(m, tree) 15. | \-quickcheck (local) f(x$root) 16. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 17. | \-base::withCallingHandlers(...) 18. \-base::loadNamespace(x) 19. +-base::namespaceImportFrom(...) 20. | \-base::asNamespace(ns) 21. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. \-base::library.dynam(lib, package, package.lib) 26. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-any_tibble.R:1:1'): generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 0 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-any_tibble.R:1:1'): generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 3 shrinks Counterexample: $min [1] 4 $max [1] 7 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-anything.R:2:3'): anything generates data frames, vectors, or undefined values -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-anything.R:2:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog::gen.run(g, size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.bind(...) 18. | \-hedgehog (local) f(x$root) 19. | \-hedgehog::gen.run(f(x), size) 20. | \-hedgehog:::unfoldgenerator(generator, size) 21. | \-generator$unGen(size) 22. | \-hedgehog:::tree.map(m, tree) 23. | \-quickcheck (local) f(x$root) 24. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 25. | \-base::withCallingHandlers(...) 26. \-base::loadNamespace(x) 27. +-base::namespaceImportFrom(...) 28. | \-base::asNamespace(ns) 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 30. +-base::namespaceImportFrom(...) 31. | \-base::asNamespace(ns) 32. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 33. \-base::library.dynam(lib, package, package.lib) 34. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-anything.R:10:3'): anything can exclude empty vectors and data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-anything.R:10:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.bind(...) 15. | \-hedgehog (local) f(x$root) 16. | \-hedgehog::gen.run(f(x), size) 17. | \-hedgehog:::unfoldgenerator(generator, size) 18. | \-generator$unGen(size) 19. | \-hedgehog:::tree.map(m, tree) 20. | \-quickcheck (local) f(x$root) 21. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 22. | \-base::withCallingHandlers(...) 23. \-base::loadNamespace(x) 24. +-base::namespaceImportFrom(...) 25. | \-base::asNamespace(ns) 26. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 27. +-base::namespaceImportFrom(...) 28. | \-base::asNamespace(ns) 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 30. \-base::library.dynam(lib, package, package.lib) 31. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-anything.R:18:3'): anything can exclude undefined values ------- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-anything.R:18:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog::gen.run(g, size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.bind(...) 18. | \-hedgehog (local) f(x$root) 19. | \-hedgehog::gen.run(f(x), size) 20. | \-hedgehog:::unfoldgenerator(generator, size) 21. | \-generator$unGen(size) 22. | \-hedgehog:::tree.map(m, tree) 23. | \-quickcheck (local) f(x$root) 24. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 25. | \-base::withCallingHandlers(...) 26. \-base::loadNamespace(x) 27. +-base::namespaceImportFrom(...) 28. | \-base::asNamespace(ns) 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 30. +-base::namespaceImportFrom(...) 31. | \-base::asNamespace(ns) 32. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 33. \-base::library.dynam(lib, package, package.lib) 34. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data-table.R:1:1'): generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data-table.R:1:1'): single_col_generator can generate empty data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data-table.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-data-table.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 1 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-data-table.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 4 $max [1] 7 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-data-table_of.R:1:1'): single_col_generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data-table_of.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-data-table_of.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 5 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-data-table_of.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 5 $max [1] 9 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-data_frame.R:1:1'): generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data_frame.R:1:1'): single_col_generator can generate empty data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data_frame.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.map(m, tree) 13. \-base::loadNamespace(x) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. +-base::namespaceImportFrom(...) 18. | \-base::asNamespace(ns) 19. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-data_frame.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 2 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-data_frame.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 5 $max [1] 5 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-data_frame_of.R:1:1'): single_col_generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data_frame_of.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog:::tree.bind(...) 13. | \-hedgehog (local) f(x$root) 14. | \-hedgehog::gen.run(f(x), size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.map(m, tree) 18. | \-quickcheck (local) f(x$root) 19. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 20. | \-base::withCallingHandlers(...) 21. \-base::loadNamespace(x) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. +-base::namespaceImportFrom(...) 26. | \-base::asNamespace(ns) 27. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 28. \-base::library.dynam(lib, package, package.lib) 29. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-data_frame_of.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 0 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-data_frame_of.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 4 $max [1] 7 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-list.R:2:3'): list_ wraps a single generator in a list --------- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-list.R:2:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.bind(...) 15. | \-hedgehog (local) f(x$root) 16. | \-hedgehog::gen.run(f(x), size) 17. | \-hedgehog:::unfoldgenerator(generator, size) 18. | \-generator$unGen(size) 19. | \-hedgehog:::tree.map(m, tree) 20. | \-quickcheck (local) f(x$root) 21. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 22. | \-base::withCallingHandlers(...) 23. \-base::loadNamespace(x) 24. +-base::namespaceImportFrom(...) 25. | \-base::asNamespace(ns) 26. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 27. +-base::namespaceImportFrom(...) 28. | \-base::asNamespace(ns) 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 30. \-base::library.dynam(lib, package, package.lib) 31. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-list.R:24:3'): list_ maintains names --------------------------- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-list.R:24:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 12. | \-hedgehog (local) FUN(X[[i]], ...) 13. | \-hedgehog:::unfoldgenerator(g, size) 14. | \-generator$unGen(size) 15. | \-hedgehog:::tree.bind(...) 16. | \-hedgehog (local) f(x$root) 17. | \-hedgehog::gen.run(f(x), size) 18. | \-hedgehog:::unfoldgenerator(generator, size) 19. | \-generator$unGen(size) 20. | \-hedgehog::gen.run(g, size) 21. | \-hedgehog:::unfoldgenerator(generator, size) 22. | \-generator$unGen(size) 23. | \-hedgehog:::tree.bind(...) 24. | \-hedgehog (local) f(x$root) 25. | \-hedgehog::gen.run(f(x), size) 26. | \-hedgehog:::unfoldgenerator(generator, size) 27. | \-generator$unGen(size) 28. | \-hedgehog:::tree.map(m, tree) 29. | \-quickcheck (local) f(x$root) 30. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 31. | \-base::withCallingHandlers(...) 32. \-base::loadNamespace(x) 33. +-base::namespaceImportFrom(...) 34. | \-base::asNamespace(ns) 35. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 36. +-base::namespaceImportFrom(...) 37. | \-base::asNamespace(ns) 38. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 39. \-base::library.dynam(lib, package, package.lib) 40. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-list_of.R:1:1'): list_of_anything generates correct values ----- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog::gen.run(f(size), size) 13. | \-hedgehog:::unfoldgenerator(generator, size) 14. | \-generator$unGen(size) 15. | \-hedgehog:::tree.bind(...) 16. | \-hedgehog (local) f(x$root) 17. | \-hedgehog::gen.run(f(x), size) 18. | \-hedgehog:::unfoldgenerator(generator, size) 19. | \-generator$unGen(size) 20. | +-hedgehog:::tree.expand(shrinker, gen.run(g, size)) 21. | | \-hedgehog:::tree.check(x) 22. | \-hedgehog::gen.run(g, size) 23. | \-hedgehog:::unfoldgenerator(generator, size) 24. | \-generator$unGen(size) 25. | \-hedgehog:::tree.replicate(...) 26. | \-base::replicate(num, ma(), simplify = FALSE) 27. | \-base::sapply(...) 28. | \-base::lapply(X = X, FUN = FUN, ...) 29. | \-hedgehog (local) FUN(X[[i]], ...) 30. | \-hedgehog (local) ma() 31. | \-hedgehog::gen.run(generator, size) 32. | \-hedgehog:::unfoldgenerator(generator, size) 33. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 34. | \-hedgehog (local) FUN(X[[i]], ...) 35. | \-hedgehog:::unfoldgenerator(g, size) 36. | \-generator$unGen(size) 37. | \-hedgehog:::tree.bind(...) 38. | \-hedgehog (local) f(x$root) 39. | \-hedgehog::gen.run(f(x), size) 40. | \-hedgehog:::unfoldgenerator(generator, size) 41. | \-generator$unGen(size) 42. | \-hedgehog::gen.run(g, size) 43. | \-hedgehog:::unfoldgenerator(generator, size) 44. | \-generator$unGen(size) 45. | \-hedgehog:::tree.bind(...) 46. | \-hedgehog (local) f(x$root) 47. | \-hedgehog::gen.run(f(x), size) 48. | \-hedgehog:::unfoldgenerator(generator, size) 49. | \-generator$unGen(size) 50. | \-hedgehog:::tree.map(m, tree) 51. | \-quickcheck (local) f(x$root) 52. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 53. | \-base::withCallingHandlers(...) 54. \-base::loadNamespace(x) 55. +-base::namespaceImportFrom(...) 56. | \-base::asNamespace(ns) 57. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 58. +-base::namespaceImportFrom(...) 59. | \-base::asNamespace(ns) 60. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 61. \-base::library.dynam(lib, package, package.lib) 62. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-list_of.R:1:1'): list_of_anything can generate empty vectors --- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 12. | \-hedgehog (local) FUN(X[[i]], ...) 13. | \-hedgehog:::unfoldgenerator(g, size) 14. | \-generator$unGen(size) 15. | \-hedgehog:::tree.bind(...) 16. | \-hedgehog (local) f(x$root) 17. | \-hedgehog::gen.run(f(x), size) 18. | \-hedgehog:::unfoldgenerator(generator, size) 19. | \-generator$unGen(size) 20. | \-hedgehog::gen.run(g, size) 21. | \-hedgehog:::unfoldgenerator(generator, size) 22. | \-generator$unGen(size) 23. | \-hedgehog:::tree.bind(...) 24. | \-hedgehog (local) f(x$root) 25. | \-hedgehog::gen.run(f(x), size) 26. | \-hedgehog:::unfoldgenerator(generator, size) 27. | \-generator$unGen(size) 28. | \-hedgehog:::tree.map(m, tree) 29. | \-quickcheck (local) f(x$root) 30. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 31. | \-base::withCallingHandlers(...) 32. \-base::loadNamespace(x) 33. +-base::namespaceImportFrom(...) 34. | \-base::asNamespace(ns) 35. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 36. +-base::namespaceImportFrom(...) 37. | \-base::asNamespace(ns) 38. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 39. \-base::library.dynam(lib, package, package.lib) 40. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-list_of.R:1:1'): list_of_anything generates vectors with lengths between 1 and 10 inclusive -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog::gen.run(g, size) 10. | \-hedgehog:::unfoldgenerator(generator, size) 11. | \-generator$unGen(size) 12. | \-hedgehog::gen.run(f(size), size) 13. | \-hedgehog:::unfoldgenerator(generator, size) 14. | \-generator$unGen(size) 15. | \-hedgehog:::tree.bind(...) 16. | \-hedgehog (local) f(x$root) 17. | \-hedgehog::gen.run(f(x), size) 18. | \-hedgehog:::unfoldgenerator(generator, size) 19. | \-generator$unGen(size) 20. | +-hedgehog:::tree.expand(shrinker, gen.run(g, size)) 21. | | \-hedgehog:::tree.check(x) 22. | \-hedgehog::gen.run(g, size) 23. | \-hedgehog:::unfoldgenerator(generator, size) 24. | \-generator$unGen(size) 25. | \-hedgehog:::tree.replicate(...) 26. | \-base::replicate(num, ma(), simplify = FALSE) 27. | \-base::sapply(...) 28. | \-base::lapply(X = X, FUN = FUN, ...) 29. | \-hedgehog (local) FUN(X[[i]], ...) 30. | \-hedgehog (local) ma() 31. | \-hedgehog::gen.run(generator, size) 32. | \-hedgehog:::unfoldgenerator(generator, size) 33. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 34. | \-hedgehog (local) FUN(X[[i]], ...) 35. | \-hedgehog:::unfoldgenerator(g, size) 36. | \-generator$unGen(size) 37. | \-hedgehog:::tree.bind(...) 38. | \-hedgehog (local) f(x$root) 39. | \-hedgehog::gen.run(f(x), size) 40. | \-hedgehog:::unfoldgenerator(generator, size) 41. | \-generator$unGen(size) 42. | \-hedgehog::gen.run(g, size) 43. | \-hedgehog:::unfoldgenerator(generator, size) 44. | \-generator$unGen(size) 45. | \-hedgehog:::tree.bind(...) 46. | \-hedgehog (local) f(x$root) 47. | \-hedgehog::gen.run(f(x), size) 48. | \-hedgehog:::unfoldgenerator(generator, size) 49. | \-generator$unGen(size) 50. | \-hedgehog:::tree.map(m, tree) 51. | \-quickcheck (local) f(x$root) 52. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 53. | \-base::withCallingHandlers(...) 54. \-base::loadNamespace(x) 55. +-base::namespaceImportFrom(...) 56. | \-base::asNamespace(ns) 57. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 58. +-base::namespaceImportFrom(...) 59. | \-base::asNamespace(ns) 60. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 61. \-base::library.dynam(lib, package, package.lib) 62. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-list_of.R:1:1'): list_of_anything generates vectors of a specific length -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $len [1] 3 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-list_of.R:1:1'): list_of_anything generates vectors within a range of lengths -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 2 $max [1] 5 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-one_of.R:2:3'): one_of doesn't modify a single generator ------- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) at test-one_of.R:2:3 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog::gen.run(g, size) 15. | \-hedgehog:::unfoldgenerator(generator, size) 16. | \-generator$unGen(size) 17. | \-hedgehog:::tree.bind(...) 18. | \-hedgehog (local) f(x$root) 19. | \-hedgehog::gen.run(f(x), size) 20. | \-hedgehog:::unfoldgenerator(generator, size) 21. | \-generator$unGen(size) 22. | \-hedgehog:::tree.map(m, tree) 23. | \-quickcheck (local) f(x$root) 24. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 25. | \-base::withCallingHandlers(...) 26. \-base::loadNamespace(x) 27. +-base::namespaceImportFrom(...) 28. | \-base::asNamespace(ns) 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 30. +-base::namespaceImportFrom(...) 31. | \-base::asNamespace(ns) 32. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 33. \-base::library.dynam(lib, package, package.lib) 34. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-tibble.R:1:1'): generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.map(m, tree) 10. \-base::loadNamespace(x) 11. +-base::namespaceImportFrom(...) 12. | \-base::asNamespace(ns) 13. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. \-base::library.dynam(lib, package, package.lib) 18. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-tibble.R:1:1'): single_col_generator can generate empty data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.map(m, tree) 10. \-base::loadNamespace(x) 11. +-base::namespaceImportFrom(...) 12. | \-base::asNamespace(ns) 13. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. \-base::library.dynam(lib, package, package.lib) 18. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-tibble.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.map(m, tree) 10. \-base::loadNamespace(x) 11. +-base::namespaceImportFrom(...) 12. | \-base::asNamespace(ns) 13. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 14. +-base::namespaceImportFrom(...) 15. | \-base::asNamespace(ns) 16. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 17. \-base::library.dynam(lib, package, package.lib) 18. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-tibble.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 0 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-tibble.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 3 shrinks Counterexample: $min [1] 1 $max [1] 6 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Error ('test-tibble_of.R:1:1'): single_col_generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.map(m, tree) 15. | \-quickcheck (local) f(x$root) 16. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 17. | \-base::withCallingHandlers(...) 18. \-base::loadNamespace(x) 19. +-base::namespaceImportFrom(...) 20. | \-base::asNamespace(ns) 21. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. \-base::library.dynam(lib, package, package.lib) 26. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-tibble_of.R:1:1'): single_col_generator generates data frame subclasses with rows from 1 to 10 by default -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Backtrace: x 1. +-quickcheck::for_all(...) 2. | \-hedgehog::forall(...) 3. | \-hedgehog::gen.run(generator, size) 4. | \-hedgehog:::unfoldgenerator(generator, size) 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) 6. | \-hedgehog (local) FUN(X[[i]], ...) 7. | \-hedgehog:::unfoldgenerator(g, size) 8. | \-generator$unGen(size) 9. | \-hedgehog:::tree.bind(...) 10. | \-hedgehog (local) f(x$root) 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) 14. | \-hedgehog:::tree.map(m, tree) 15. | \-quickcheck (local) f(x$root) 16. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) 17. | \-base::withCallingHandlers(...) 18. \-base::loadNamespace(x) 19. +-base::namespaceImportFrom(...) 20. | \-base::asNamespace(ns) 21. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 22. +-base::namespaceImportFrom(...) 23. | \-base::asNamespace(ns) 24. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 25. \-base::library.dynam(lib, package, package.lib) 26. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-tibble_of.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows [1] 2 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-tibble_of.R:1:1'): single_col_generator generates data frame subclasses with a range of rows -- Falsifiable after 1 tests, and 2 shrinks Counterexample: $min [1] 3 $max [1] 6 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) [ FAIL 50 | WARN 833 | SKIP 0 | PASS 412 ] Error: Test failures Execution halted * checking PDF version of manual ... OK * DONE Status: 2 ERRORs See '/tmp/th798/25909878/R-devel/1136/quickcheck.Rcheck/00check.log' for details. [1] "2025-12-15 00:49:02 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) --- R_Under_development_unstable_2025-12-14_r89168/release_1.17.8.Rcheck/00check.log 2025-12-15 00:43:07.945029230 -0700 +++ R_Under_development_unstable_2025-12-14_r89168/master_1.17.99.4f8695fa560beaa7d7d8034ee41fa6146e2998b5.Rcheck/00check.log 2025-12-15 00:49:02.599440204 -0700 @@ -71,7 +71,7 @@ > library(testthat) > library(quickcheck) > test_check("quickcheck") - [ FAIL 49 | WARN 833 | SKIP 0 | PASS 414 ] + [ FAIL 50 | WARN 833 | SKIP 0 | PASS 412 ] == Failed tests ================================================================ -- Error ('test-any_data-table.R:1:1'): generator can generate empty data frames -- @@ -148,7 +148,7 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $rows - [1] 0 + [1] 4 Backtrace: x @@ -160,10 +160,10 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $min - [1] 5 + [1] 4 $max - [1] 9 + [1] 6 Backtrace: x @@ -255,10 +255,10 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $min - [1] 4 + [1] 0 $max - [1] 6 + [1] 10 Backtrace: x @@ -332,22 +332,22 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $rows - [1] 4 + [1] 0 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-any_tibble.R:1:1'): generator generates data frame subclasses with a range of rows -- - Falsifiable after 1 tests, and 2 shrinks + Falsifiable after 1 tests, and 3 shrinks Counterexample: $min - [1] 3 + [1] 4 $max - [1] 5 + [1] 7 Backtrace: x @@ -371,24 +371,27 @@ 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) - 14. | \-hedgehog:::tree.bind(...) - 15. | \-hedgehog (local) f(x$root) - 16. | \-hedgehog::gen.run(f(x), size) - 17. | \-hedgehog:::unfoldgenerator(generator, size) - 18. | \-generator$unGen(size) - 19. | \-hedgehog:::tree.map(m, tree) - 20. | \-quickcheck (local) f(x$root) - 21. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) - 22. | \-base::withCallingHandlers(...) - 23. \-base::loadNamespace(x) - 24. +-base::namespaceImportFrom(...) - 25. | \-base::asNamespace(ns) - 26. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) - 27. +-base::namespaceImportFrom(...) - 28. | \-base::asNamespace(ns) - 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) - 30. \-base::library.dynam(lib, package, package.lib) - 31. \-base::dyn.load(file, DLLpath = DLLpath, ...) + 14. | \-hedgehog::gen.run(g, size) + 15. | \-hedgehog:::unfoldgenerator(generator, size) + 16. | \-generator$unGen(size) + 17. | \-hedgehog:::tree.bind(...) + 18. | \-hedgehog (local) f(x$root) + 19. | \-hedgehog::gen.run(f(x), size) + 20. | \-hedgehog:::unfoldgenerator(generator, size) + 21. | \-generator$unGen(size) + 22. | \-hedgehog:::tree.map(m, tree) + 23. | \-quickcheck (local) f(x$root) + 24. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) + 25. | \-base::withCallingHandlers(...) + 26. \-base::loadNamespace(x) + 27. +-base::namespaceImportFrom(...) + 28. | \-base::asNamespace(ns) + 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) + 30. +-base::namespaceImportFrom(...) + 31. | \-base::asNamespace(ns) + 32. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) + 33. \-base::library.dynam(lib, package, package.lib) + 34. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-anything.R:10:3'): anything can exclude empty vectors and data frames -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar @@ -443,24 +446,27 @@ 11. | \-hedgehog::gen.run(f(x), size) 12. | \-hedgehog:::unfoldgenerator(generator, size) 13. | \-generator$unGen(size) - 14. | \-hedgehog:::tree.bind(...) - 15. | \-hedgehog (local) f(x$root) - 16. | \-hedgehog::gen.run(f(x), size) - 17. | \-hedgehog:::unfoldgenerator(generator, size) - 18. | \-generator$unGen(size) - 19. | \-hedgehog:::tree.map(m, tree) - 20. | \-quickcheck (local) f(x$root) - 21. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) - 22. | \-base::withCallingHandlers(...) - 23. \-base::loadNamespace(x) - 24. +-base::namespaceImportFrom(...) - 25. | \-base::asNamespace(ns) - 26. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) - 27. +-base::namespaceImportFrom(...) - 28. | \-base::asNamespace(ns) - 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) - 30. \-base::library.dynam(lib, package, package.lib) - 31. \-base::dyn.load(file, DLLpath = DLLpath, ...) + 14. | \-hedgehog::gen.run(g, size) + 15. | \-hedgehog:::unfoldgenerator(generator, size) + 16. | \-generator$unGen(size) + 17. | \-hedgehog:::tree.bind(...) + 18. | \-hedgehog (local) f(x$root) + 19. | \-hedgehog::gen.run(f(x), size) + 20. | \-hedgehog:::unfoldgenerator(generator, size) + 21. | \-generator$unGen(size) + 22. | \-hedgehog:::tree.map(m, tree) + 23. | \-quickcheck (local) f(x$root) + 24. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) + 25. | \-base::withCallingHandlers(...) + 26. \-base::loadNamespace(x) + 27. +-base::namespaceImportFrom(...) + 28. | \-base::asNamespace(ns) + 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) + 30. +-base::namespaceImportFrom(...) + 31. | \-base::asNamespace(ns) + 32. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) + 33. \-base::library.dynam(lib, package, package.lib) + 34. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-data-table.R:1:1'): generator wraps a vector in a data frame subclass -- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar @@ -540,12 +546,12 @@ 20. \-base::library.dynam(lib, package, package.lib) 21. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-data-table.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- - Falsifiable after 1 tests, and 2 shrinks + Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows - [1] 3 + [1] 1 Backtrace: x @@ -557,10 +563,10 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $min - [1] 2 + [1] 4 $max - [1] 5 + [1] 7 Backtrace: x @@ -640,7 +646,7 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $rows - [1] 4 + [1] 5 Backtrace: x @@ -745,7 +751,7 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $rows - [1] 5 + [1] 2 Backtrace: x @@ -757,10 +763,10 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $min - [1] 2 + [1] 5 $max - [1] 10 + [1] 5 Backtrace: x @@ -840,7 +846,7 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $rows - [1] 3 + [1] 0 Backtrace: x @@ -852,15 +858,51 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $min - [1] 2 + [1] 4 $max - [1] 5 + [1] 7 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) + -- Error ('test-list.R:2:3'): list_ wraps a single generator in a list --------- + Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': + /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar + Backtrace: + x + 1. +-quickcheck::for_all(...) at test-list.R:2:3 + 2. | \-hedgehog::forall(...) + 3. | \-hedgehog::gen.run(generator, size) + 4. | \-hedgehog:::unfoldgenerator(generator, size) + 5. | \-base::lapply(generator, function(g) unfoldgenerator(g, size)) + 6. | \-hedgehog (local) FUN(X[[i]], ...) + 7. | \-hedgehog:::unfoldgenerator(g, size) + 8. | \-generator$unGen(size) + 9. | \-hedgehog:::tree.bind(...) + 10. | \-hedgehog (local) f(x$root) + 11. | \-hedgehog::gen.run(f(x), size) + 12. | \-hedgehog:::unfoldgenerator(generator, size) + 13. | \-generator$unGen(size) + 14. | \-hedgehog:::tree.bind(...) + 15. | \-hedgehog (local) f(x$root) + 16. | \-hedgehog::gen.run(f(x), size) + 17. | \-hedgehog:::unfoldgenerator(generator, size) + 18. | \-generator$unGen(size) + 19. | \-hedgehog:::tree.map(m, tree) + 20. | \-quickcheck (local) f(x$root) + 21. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) + 22. | \-base::withCallingHandlers(...) + 23. \-base::loadNamespace(x) + 24. +-base::namespaceImportFrom(...) + 25. | \-base::asNamespace(ns) + 26. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) + 27. +-base::namespaceImportFrom(...) + 28. | \-base::asNamespace(ns) + 29. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) + 30. \-base::library.dynam(lib, package, package.lib) + 31. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Error ('test-list.R:24:3'): list_ maintains names --------------------------- Error in `dyn.load(file, DLLpath = DLLpath, ...)`: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar @@ -1064,46 +1106,49 @@ 39. | \-hedgehog::gen.run(f(x), size) 40. | \-hedgehog:::unfoldgenerator(generator, size) 41. | \-generator$unGen(size) - 42. | \-hedgehog:::tree.bind(...) - 43. | \-hedgehog (local) f(x$root) - 44. | \-hedgehog::gen.run(f(x), size) - 45. | \-hedgehog:::unfoldgenerator(generator, size) - 46. | \-generator$unGen(size) - 47. | \-hedgehog:::tree.map(m, tree) - 48. | \-quickcheck (local) f(x$root) - 49. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) - 50. | \-base::withCallingHandlers(...) - 51. \-base::loadNamespace(x) - 52. +-base::namespaceImportFrom(...) - 53. | \-base::asNamespace(ns) - 54. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) - 55. +-base::namespaceImportFrom(...) - 56. | \-base::asNamespace(ns) - 57. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) - 58. \-base::library.dynam(lib, package, package.lib) - 59. \-base::dyn.load(file, DLLpath = DLLpath, ...) + 42. | \-hedgehog::gen.run(g, size) + 43. | \-hedgehog:::unfoldgenerator(generator, size) + 44. | \-generator$unGen(size) + 45. | \-hedgehog:::tree.bind(...) + 46. | \-hedgehog (local) f(x$root) + 47. | \-hedgehog::gen.run(f(x), size) + 48. | \-hedgehog:::unfoldgenerator(generator, size) + 49. | \-generator$unGen(size) + 50. | \-hedgehog:::tree.map(m, tree) + 51. | \-quickcheck (local) f(x$root) + 52. | \-base::suppressMessages(tibble::as_tibble(a, .name_repair = "unique")) + 53. | \-base::withCallingHandlers(...) + 54. \-base::loadNamespace(x) + 55. +-base::namespaceImportFrom(...) + 56. | \-base::asNamespace(ns) + 57. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) + 58. +-base::namespaceImportFrom(...) + 59. | \-base::asNamespace(ns) + 60. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) + 61. \-base::library.dynam(lib, package, package.lib) + 62. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-list_of.R:1:1'): list_of_anything generates vectors of a specific length -- Falsifiable after 1 tests, and 1 shrinks Counterexample: $len - [1] 10 + [1] 3 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) -- Failure ('test-list_of.R:1:1'): list_of_anything generates vectors within a range of lengths -- - Falsifiable after 1 tests, and 3 shrinks + Falsifiable after 1 tests, and 2 shrinks Counterexample: $min - [1] 3 + [1] 2 $max - [1] 7 + [1] 5 Backtrace: x @@ -1218,12 +1263,12 @@ 17. \-base::library.dynam(lib, package, package.lib) 18. \-base::dyn.load(file, DLLpath = DLLpath, ...) -- Failure ('test-tibble.R:1:1'): single_col_generator generates data frame subclasses with a specific number of rows -- - Falsifiable after 1 tests, and 2 shrinks + Falsifiable after 1 tests, and 1 shrinks Counterexample: $rows - [1] 4 + [1] 0 Backtrace: x @@ -1235,10 +1280,10 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $min - [1] 2 + [1] 1 $max - [1] 8 + [1] 6 Backtrace: x @@ -1312,7 +1357,7 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $rows - [1] 0 + [1] 2 Backtrace: x @@ -1324,17 +1369,17 @@ /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar> Counterexample: $min - [1] 1 + [1] 3 $max - [1] 9 + [1] 6 Backtrace: x 1. \-quickcheck::for_all(...) 2. \-hedgehog::forall(...) - [ FAIL 49 | WARN 833 | SKIP 0 | PASS 414 ] + [ FAIL 50 | WARN 833 | SKIP 0 | PASS 412 ] Error: Test failures Execution halted * checking PDF version of manual ... OK > library(data.table, lib.loc=R.home("library")) Error: package or namespace load failed for 'data.table' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so': /projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so: undefined symbol: Rf_GetOption Execution halted WARNING: ignoring environment value of R_HOME R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2025-12-15/deps.csv", task.str = "1136", release = "/scratch/th798/data.table-revdeps/2025-12-15/data.table_release_1.17.8.tar.gz", master = "/scratch/th798/data.table-revdeps/2025-12-15/data.table_master_1.17.99.4f8695fa560beaa7d7d8034ee41fa6146e2998b5.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/25909878/R-release/1136" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/25909878/R-release/1136/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "quickcheck" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/25909878/R-release/1136/library" [2] "/projects/genomic-ml/R/R-release/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2025-12-15 00:49:10 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/25909878/R-release/1136/library' (as 'lib' is unspecified) also installing the dependency 'hedgehog' trying URL 'http://cloud.r-project.org/src/contrib/hedgehog_0.2.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/quickcheck_0.1.3.tar.gz' * installing *source* package 'hedgehog' ... ** this is package 'hedgehog' version '0.2' ** package 'hedgehog' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hedgehog) * installing *source* package 'quickcheck' ... ** this is package 'quickcheck' version '0.1.3' ** package 'quickcheck' successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to 'sqrt' ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quickcheck) The downloaded source packages are in '/tmp/th798/25909878/RtmpaMzP0Y/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 7.620 0.935 16.201 > print(Sys.time()) [1] "2025-12-15 00:49:26 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2025-12-15 00:49:26 MST" Installing package into '/tmp/th798/25909878/R-release/1136/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.8' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/25909878/R-release/1136/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-12-15 00:49:51 MST" * using log directory '/tmp/th798/25909878/R-release/1136/quickcheck.Rcheck' * using R version 4.5.2 (2025-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'quickcheck/DESCRIPTION' ... OK * this is package 'quickcheck' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'quickcheck' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking PDF version of manual ... OK * DONE Status: OK [1] "2025-12-15 00:56:47 MST" [1] "2025-12-15 00:56:47 MST" Installing package into '/tmp/th798/25909878/R-release/1136/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.17.99' ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollapply.c -o frollapply.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mergelist.c -o mergelist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shellsort.c -o shellsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/25909878/R-release/1136/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2025-12-15 00:57:12 MST" * using log directory '/tmp/th798/25909878/R-release/1136/quickcheck.Rcheck' * using R version 4.5.2 (2025-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'quickcheck/DESCRIPTION' ... OK * this is package 'quickcheck' version '0.1.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'quickcheck' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking PDF version of manual ... OK * DONE Status: OK [1] "2025-12-15 01:03:57 MST" > system(paste(c("diff -u", Rcheck.list), collapse=" ")) > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: Empty data.table (0 rows and 3 cols): checking,master,release > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + unlink(dt.git, recursive=TRUE, force=TRUE) + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } >