Note: the module "R" cannot be unloaded because it was not loaded.

WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2026-01-29 r89354) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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Type 'license()' or 'licence()' for distribution details.

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> cargs <- commandArgs(trailingOnly=TRUE)
> if(length(cargs)==0){
+   ## before running interactively, make sure to start emacs/R with
+   ## environment defined in /scratch/...check_one.sh, particularly
+   ## R_LIBS_USER=/tmp/... otherwise we get error when installing
+   ## data.table.
+   base <- "/scratch/th798/data.table-revdeps/*"
+   cargs <- c(
+     Sys.glob(file.path(base,"deps.csv")),
+     "349",
+     Sys.glob(file.path(base, "data.table_release_*tar.gz")),
+     Sys.glob(file.path(base, "data.table_master_*tar.gz"))
+   )
+ }
> names(cargs) <- c("deps.csv", "task.str", "release", "master")
> dput(cargs)
c(deps.csv = "/scratch/th798/data.table-revdeps/2026-01-30/deps.csv", 
task.str = "1231", release = "/scratch/th798/data.table-revdeps/2026-01-30/data.table_release_1.18.2.1.tar.gz", 
master = "/scratch/th798/data.table-revdeps/2026-01-30/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz"
)
> (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers
[1] "/tmp/th798/26735458/R-devel/1231"
> if(requireNamespace("R.cache"))R.cache::getCachePath()
Loading required namespace: R.cache
[1] "/tmp/th798/26735458/R-devel/1231/R.cache"
> task.id <- as.integer(cargs[["task.str"]])
> deps.df <- read.csv(cargs[["deps.csv"]])
> (rev.dep <- deps.df$Package[task.id])
[1] "rio"
> job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id)
> setwd(task.dir)
> .libPaths()
[1] "/tmp/th798/26735458/R-devel/1231/library"
[2] "/projects/genomic-ml/R/R-devel/library"  
> options(repos=c(#this should be in ~/.Rprofile too.
+   CRAN="http://cloud.r-project.org"))
> print(Sys.time())
[1] "2026-01-30 03:40:55 MST"
> install.time <- system.time({
+   install.packages(rev.dep, dep=TRUE)
+ })
Installing package into '/tmp/th798/26735458/R-devel/1231/library'
(as 'lib' is unspecified)
Warning: dependency 'qs' is not available
also installing the dependencies 'cpp11', 'xfun', 'fstcore', 'Rcpp', 'minty', 'stringfish', 'knitr', 'fst', 'hexView', 'pzfx', 'readODS', 'rmarkdown', 'rmatio', 'yaml', 'qs2'

trying URL 'http://cloud.r-project.org/src/contrib/cpp11_0.5.3.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/xfun_0.56.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/fstcore_0.10.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/Rcpp_1.1.1.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/minty_0.0.6.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/stringfish_0.18.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/knitr_1.51.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/fst_0.9.8.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/hexView_0.3-4.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/pzfx_0.3.1.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/readODS_2.3.2.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/rmarkdown_2.30.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/rmatio_0.19.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/yaml_2.3.12.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/qs2_0.1.7.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/rio_1.2.4.tar.gz'
* installing *source* package 'cpp11' ...
** this is package 'cpp11' version '0.5.3'
** package 'cpp11' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cpp11)
* installing *source* package 'xfun' ...
** this is package 'xfun' version '0.56'
** package 'xfun' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c base64.c -o base64.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rand_lcg.c -o rand_lcg.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o xfun.so base64.o init.o rand_lcg.o
installing to /tmp/th798/26735458/R-devel/1231/library/00LOCK-xfun/00new/xfun/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xfun)
* installing *source* package 'Rcpp' ...
** this is package 'Rcpp' version '1.1.1'
** package 'Rcpp' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c api.cpp -o api.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c attributes.cpp -o attributes.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c barrier.cpp -o barrier.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c date.cpp -o date.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c module.cpp -o module.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c rcpp_init.cpp -o rcpp_init.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o
installing to /tmp/th798/26735458/R-devel/1231/library/00LOCK-Rcpp/00new/Rcpp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpp)
* installing *source* package 'hexView' ...
** this is package 'hexView' version '0.3-4'
** package 'hexView' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hexView)
* installing *source* package 'pzfx' ...
** this is package 'pzfx' version '0.3.1'
** package 'pzfx' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pzfx)
* installing *source* package 'rmatio' ...
** this is package 'rmatio' version '0.19.0'
** package 'rmatio' successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /home/th798/.conda/envs/emacs1/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking inttypes.h... yes
checking stdlib.h... yes
checking stdint.h... yes
checking strings.h... yes
checking string.h... yes
checking sys/stat.h... yes
checking sys/types.h... yes
checking unistd.h... 
checking for zlib... yes
checking size of char... 1
checking size of short... 2
checking size of double... 8
checking size of float... 4
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of size_t... 8
checking size of void *... 8
checking for mat_int8_t... int8_t
checking for mat_int16_t... int16_t
checking for mat_int32_t... int32_t
checking for mat_int64_t... int64_t
checking for mat_uint8_t... uint8_t
checking for mat_uint16_t... uint16_t
checking for mat_uint32_t... uint32_t
checking for mat_uint64_t... uint64_t
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/matio/config.h
config.status: src/matio/config.h is unchanged
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/endian.c -o matio/endian.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/inflate.c -o matio/inflate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/mat4.c -o matio/mat4.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/mat5.c -o matio/mat5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/mat.c -o matio/mat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/matvar_cell.c -o matio/matvar_cell.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/matvar_struct.c -o matio/matvar_struct.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/read_data.c -o matio/read_data.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rmatio.c -o rmatio.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o rmatio.so matio/endian.o matio/inflate.o matio/mat4.o matio/mat5.o matio/mat.o matio/matvar_cell.o matio/matvar_struct.o matio/read_data.o rmatio.o -L/home/th798/.conda/envs/emacs1/lib -lz
installing to /tmp/th798/26735458/R-devel/1231/library/00LOCK-rmatio/00new/rmatio/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rmatio)
* installing *source* package 'yaml' ...
** this is package 'yaml' version '2.3.12'
** package 'yaml' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c api.c -o api.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dumper.c -o dumper.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c emitter.c -o emitter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c implicit.c -o implicit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c loader.c -o loader.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c parser.c -o parser.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c r_emit.c -o r_emit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c r_ext.c -o r_ext.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c r_parse.c -o r_parse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reader.c -o reader.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c scanner.c -o scanner.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c writer.c -o writer.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o
installing to /tmp/th798/26735458/R-devel/1231/library/00LOCK-yaml/00new/yaml/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (yaml)
* installing *source* package 'rio' ...
** this is package 'rio' version '1.2.4'
** package 'rio' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rio)
* installing *source* package 'fstcore' ...
** this is package 'fstcore' version '0.10.0'
** package 'fstcore' successfully unpacked and MD5 sums checked
** using staged installation
0.29.2
Found pkg-config cflags and libs for LZ4!
0.29.2
Found pkg-config cflags and libs for ZSTD!
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RcppExports.cpp -o RcppExports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c flex_store.cpp -o flex_store.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fst_blockrunner_char.cpp -o fst_blockrunner_char.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fst_compress.cpp -o fst_compress.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fst_error.cpp -o fst_error.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fst_table.cpp -o fst_table.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c openmp.cpp -o openmp.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c versions.cpp -o versions.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/compression/compression.cpp -o fstlib/compression/compression.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/compression/compressor.cpp -o fstlib/compression/compressor.o
ar rcs libCOMPRESSION.a fstlib/compression/compression.o fstlib/compression/compressor.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/interface/openmphelper.cpp -o fstlib/interface/openmphelper.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/interface/fststore.cpp -o fstlib/interface/fststore.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/logical/logical_v10.cpp -o fstlib/logical/logical_v10.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/integer/integer_v8.cpp -o fstlib/integer/integer_v8.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/byte/byte_v12.cpp -o fstlib/byte/byte_v12.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/double/double_v9.cpp -o fstlib/double/double_v9.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/character/character_v6.cpp -o fstlib/character/character_v6.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/factor/factor_v7.cpp -o fstlib/factor/factor_v7.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/blockstreamer/blockstreamer_v2.cpp -o fstlib/blockstreamer/blockstreamer_v2.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/integer64/integer64_v11.cpp -o fstlib/integer64/integer64_v11.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fstlib/byteblock/byteblock_v13.cpp -o fstlib/byteblock/byteblock_v13.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -Ifstlib -Ifstlib/ZSTD -Ifstlib/ZSTD/common -Ifstlib/LZ4 -Ifstlib/ZSTD/decompress -Ifstlib/ZSTD/compress -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fstlib/ZSTD/common/xxhash.c -o fstlib/ZSTD/common/xxhash.o
ar rcs libFRAME.a fstlib/interface/openmphelper.o fstlib/interface/fststore.o fstlib/logical/logical_v10.o fstlib/integer/integer_v8.o fstlib/byte/byte_v12.o fstlib/double/double_v9.o fstlib/character/character_v6.o fstlib/factor/factor_v7.o fstlib/blockstreamer/blockstreamer_v2.o fstlib/integer64/integer64_v11.o fstlib/byteblock/byteblock_v13.o fstlib/ZSTD/common/xxhash.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o fstcore.so RcppExports.o flex_store.o fst_blockrunner_char.o fst_compress.o fst_error.o fst_table.o openmp.o versions.o -fopenmp ./libFRAME.a ./libCOMPRESSION.a -L/home/th798/.conda/envs/emacs1/lib -llz4 -L/home/th798/.conda/envs/emacs1/lib -lzstd
installing to /tmp/th798/26735458/R-devel/1231/library/00LOCK-fstcore/00new/fstcore/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fstcore)
* installing *source* package 'minty' ...
** this is package 'minty' version '0.0.6'
** package 'minty' successfully unpacked and MD5 sums checked
** using staged installation
** libs
Error: package 'tzdb' 0.4.0 was found, but >= 0.5.0 is required by 'minty'
* removing '/tmp/th798/26735458/R-devel/1231/library/minty'
* installing *source* package 'stringfish' ...
** this is package 'stringfish' version '0.18.0'
** package 'stringfish' successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /home/th798/.conda/envs/emacs1/bin/pkg-config
stringfish configure script
PCRE2 library not detected -- compiling from source

-IPCRE2
$(LIBPCRE2)
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RcppExports.cpp -o RcppExports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c sf_functions.cpp -o sf_functions.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_chartables.c -o PCRE2/pcre2_chartables.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_auto_possess.c -o PCRE2/pcre2_auto_possess.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_compile.c -o PCRE2/pcre2_compile.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_config.c -o PCRE2/pcre2_config.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_context.c -o PCRE2/pcre2_context.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_convert.c -o PCRE2/pcre2_convert.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_dfa_match.c -o PCRE2/pcre2_dfa_match.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_error.c -o PCRE2/pcre2_error.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_extuni.c -o PCRE2/pcre2_extuni.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_find_bracket.c -o PCRE2/pcre2_find_bracket.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_jit_compile.c -o PCRE2/pcre2_jit_compile.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_maketables.c -o PCRE2/pcre2_maketables.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_match.c -o PCRE2/pcre2_match.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_match_data.c -o PCRE2/pcre2_match_data.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_newline.c -o PCRE2/pcre2_newline.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_ord2utf.c -o PCRE2/pcre2_ord2utf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_pattern_info.c -o PCRE2/pcre2_pattern_info.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_script_run.c -o PCRE2/pcre2_script_run.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_serialize.c -o PCRE2/pcre2_serialize.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_string_utils.c -o PCRE2/pcre2_string_utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_study.c -o PCRE2/pcre2_study.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_substitute.c -o PCRE2/pcre2_substitute.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_substring.c -o PCRE2/pcre2_substring.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_tables.c -o PCRE2/pcre2_tables.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_ucd.c -o PCRE2/pcre2_ucd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_valid_utf.c -o PCRE2/pcre2_valid_utf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_xclass.c -o PCRE2/pcre2_xclass.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_is_bundled.c -o PCRE2/pcre2_is_bundled.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c PCRE2_wrapper/pcre2_wrapper.cpp -o PCRE2_wrapper/pcre2_wrapper.o
ar rcs libSFPCRE2.a PCRE2/pcre2_chartables.o PCRE2/pcre2_auto_possess.o PCRE2/pcre2_compile.o PCRE2/pcre2_config.o PCRE2/pcre2_context.o PCRE2/pcre2_convert.o PCRE2/pcre2_dfa_match.o PCRE2/pcre2_error.o PCRE2/pcre2_extuni.o PCRE2/pcre2_find_bracket.o PCRE2/pcre2_jit_compile.o PCRE2/pcre2_maketables.o PCRE2/pcre2_match.o PCRE2/pcre2_match_data.o PCRE2/pcre2_newline.o PCRE2/pcre2_ord2utf.o PCRE2/pcre2_pattern_info.o PCRE2/pcre2_script_run.o PCRE2/pcre2_serialize.o PCRE2/pcre2_string_utils.o PCRE2/pcre2_study.o PCRE2/pcre2_substitute.o PCRE2/pcre2_substring.o PCRE2/pcre2_tables.o PCRE2/pcre2_ucd.o PCRE2/pcre2_valid_utf.o PCRE2/pcre2_xclass.o PCRE2/pcre2_is_bundled.o PCRE2_wrapper/pcre2_wrapper.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o stringfish.so RcppExports.o sf_functions.o -lpthread -L. -lSFPCRE2
installing to /tmp/th798/26735458/R-devel/1231/library/00LOCK-stringfish/00new/stringfish/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stringfish)
* installing *source* package 'knitr' ...
** this is package 'knitr' version '1.51'
** package 'knitr' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (knitr)
* installing *source* package 'fst' ...
** this is package 'fst' version '0.9.8'
** package 'fst' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/tmp/th798/26735458/R-devel/1231/library/fstcore/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RcppExports.cpp -o RcppExports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/tmp/th798/26735458/R-devel/1231/library/fstcore/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c flex_store.cpp -o flex_store.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/tmp/th798/26735458/R-devel/1231/library/fstcore/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fst_compress.cpp -o fst_compress.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG  -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/tmp/th798/26735458/R-devel/1231/library/fstcore/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c openmp.cpp -o openmp.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o fst.so RcppExports.o flex_store.o fst_compress.o openmp.o
installing to /tmp/th798/26735458/R-devel/1231/library/00LOCK-fst/00new/fst/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fst)
ERROR: dependency 'minty' is not available for package 'readODS'
Perhaps try a variation of:
install.packages('minty')
* removing '/tmp/th798/26735458/R-devel/1231/library/readODS'
* installing *source* package 'rmarkdown' ...
** this is package 'rmarkdown' version '2.30'
** package 'rmarkdown' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rmarkdown)
* installing *source* package 'qs2' ...
** this is package 'qs2' version '0.1.7'
** package 'qs2' successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /home/th798/.conda/envs/emacs1/bin/pkg-config
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/g++ option to enable C++11 features... none needed
C++ compiler: /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17
zstd 1.5.2 library detected but is lower than bundled version (1.5.2) -- compiling from source
Fixed blocksize
Checking if atomic link works without -latomic
TBB use determined by RcppParallel
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -IZSTD -IZSTD/common -IZSTD/decompress -IZSTD/compress   -DIS_UTF8_LOCALE=0 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/tmp/th798/26735458/R-devel/1231/library/stringfish/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include     -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RcppExports.cpp -o RcppExports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -IZSTD -IZSTD/common -IZSTD/decompress -IZSTD/compress   -DIS_UTF8_LOCALE=0 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/tmp/th798/26735458/R-devel/1231/library/stringfish/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include     -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c qx_functions.cpp -o qx_functions.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -IZSTD -IZSTD/common -IZSTD/decompress -IZSTD/compress   -DIS_UTF8_LOCALE=0 -I'/tmp/th798/26735458/R-devel/1231/library/Rcpp/include' -I'/tmp/th798/26735458/R-devel/1231/library/stringfish/include' -I'/projects/genomic-ml/R/R-devel/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ZSTD/zstd.c -o ZSTD/zstd.o
ar rcs libQSZSTD.a ZSTD/zstd.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o qs2.so RcppExports.o qx_functions.o -L. -lQSZSTD
installing to /tmp/th798/26735458/R-devel/1231/library/00LOCK-qs2/00new/qs2/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qs2)

The downloaded source packages are in
	'/tmp/th798/26735458/RtmpFgmkgb/downloaded_packages'
Warning messages:
1: In install.packages(rev.dep, dep = TRUE) :
  installation of package 'minty' had non-zero exit status
2: In install.packages(rev.dep, dep = TRUE) :
  installation of package 'readODS' had non-zero exit status
> cat("Time to install revdep:\n")
Time to install revdep:
> print(install.time)
   user  system elapsed 
148.045  16.316 169.629 
> print(Sys.time())
[1] "2026-01-30 03:43:44 MST"
> downloaded_packages <- file.path(
+   tempdir(),
+   "downloaded_packages")
> dl.glob <- file.path(
+   downloaded_packages,
+   paste0(rev.dep,"_*.tar.gz"))
> rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob))
> colnames(rev.dep.dl.row) <- c("pkg","path")
> rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE)
> pkg.Rcheck <- paste0(rev.dep, ".Rcheck")
> 
> proj.dir <- "~/genomic-ml/data.table-revdeps"
> source(file.path(proj.dir, "myStatus.R"))
> Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]]))
> dir.create(Rvers, showWarnings=FALSE)
> Rcheck.list <- list()
> for(dt.version.short in c("release", "master")){
+   dt.tar.gz <- cargs[[dt.version.short]]
+   dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz)
+   print(Sys.time())
+   install.packages(dt.tar.gz, repos=NULL)
+   print(Sys.time())
+   check.cmd <- get_check_cmd(rev.dep.release.tar.gz)
+   system(check.cmd)
+   print(Sys.time())
+   dest.Rcheck <- file.path(
+     Rvers,
+     paste0(dt.version, ".Rcheck"))
+   unlink(dest.Rcheck, recursive=TRUE)
+   file.rename(pkg.Rcheck, dest.Rcheck)
+   Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log")
+ }
[1] "2026-01-30 03:43:44 MST"
Installing package into '/tmp/th798/26735458/R-devel/1231/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.18.2.1'
** package 'data.table' successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollapply.c -o frollapply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c hash.c -o hash.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mergelist.c -o mergelist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shellsort.c -o shellsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o hash.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fvisibility=hidden -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fvisibility=hidden -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/26735458/R-devel/1231/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2026-01-30 03:44:13 MST"
* using log directory '/tmp/th798/26735458/R-devel/1231/rio.Rcheck'
* using R Under development (unstable) (2026-01-29 r89354)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'rio/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rio' version '1.2.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Packages suggested but not available for checking: 'readODS', 'qs'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'rio' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'readODS'
Unknown package 'qs' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'rio-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: convert
> ### Title: Convert from one file format to another
> ### Aliases: convert
> 
> ### ** Examples
> 
> ## For demo, a temp. file path is created with the file extension .dta (Stata)
> dta_file <- tempfile(fileext = ".dta")
> ## .csv
> csv_file <- tempfile(fileext = ".csv")
> ## .xlsx
> xlsx_file <- tempfile(fileext = ".xlsx")
> 
> 
> ## Create a Stata data file
> export(mtcars, dta_file)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
Calls: export ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  > library("rio")
  > test_check("rio", reporter = "summary")
  characterize: 
  characterize()/factorize(): W.WW.WW.WW.WW.W.W
  check_file: ..................W.....W....W.....W....W
  compress: 
  Compressed files: W.W.W.W.W.W.W  adding: file2fd4653f5c0d8b.csv (deflated 78%)
  W.W.W.W.WW.W.W.W.WW.W.W.W.W.WW.W.W.W.W.WW.W.W.W.WW.W.W.W.W.W  adding: mtcars1.csv (deflated 48%)
    adding: mtcars2.csv (deflated 50%)
    adding: mtcars3.csv (deflated 47%)
  W...W.W.W1W  adding: file2fd4653a45ab6e.xlsx (deflated 10%)
  23.W45/usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W67/usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W89/usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .Wab/usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .Wcd/usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .eW........WSW  adding: tmp/th798/26735458/RtmpvfFzwK/file2fd4656143f30.csv (stored 0%)
  .W.W.W.W  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  W.W..W
  convert: fWW.W.W.WgW
  create_outfiles: ...W.....W
  errors: .W....W..W.WW..W.W
  export_corner_cases: W..W.WW..W.WW.hWiW
  export_list: WWW..WWWW.WWWW.WWWWWW	zip warning: name not matched: file_1.csv
  	zip warning: name not matched: file_2.csv
  	zip warning: name not matched: file_3.csv
  
  zip error: Nothing to do! (archive.zip)
  jW..  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  .W.W.W.W....W.WSW
  extensions: S
  format_R: W.W.W.W.W
  format_arff: W.W.W
  format_csv: W.WW.W.W.WW.W.W.W.WW.W.WW.W.W.W.W.W.W.W..WkW
  format_csvy: W.W.W
  format_dbf: W.W.W.W
  format_dif: W.W
  format_dta: lWmWnWoW
  format_eviews: W.W
  format_external_packages: ...........W....W
  format_feather: W.W.W
  format_fortran: W.W
  format_fst: W.W.W
  format_fwf: W.pWW.qWrW
  format_html: W.W.WW.WW.W.WW.W.W.W.W...............W
  format_json: W.W.WW.W.W.W.W.W
  format_matlab: SW
  format_mtp: 
  format_ods: S
  format_parquet: W.W.W
  format_psv: W.W.W..W
  format_pzfx: W.W.W.W.W.W
  format_qs: S
  format_qs2: W.W.W
  format_rdata: W.W.W.W.W.W.W.W.W..WW.W.W.W.W.W.W.W.W..W
  format_rds: W.W.WW.W.W.W
  format_rec: 
  format_sas: sWtW
  format_sav: uWvW
  format_syd: W.W
  format_tsv: W.W.W..W
  format_xls: W.wW.W.xWyWzWAW.W
  format_xml: W.W.W...............W
  format_yml: W.W...WBW
  gather_attrs: Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  
  guess: .....W........WW.W..W
  identical: ...W....W.WCWDW....W..W.W
  import_list: .W.W.W.WW.W.WW.W.W.W.WW.W.W.W.WWWW.WW.WW.WW.WW.WWW.WWW.WWW.WWW.WSWW.W  adding: file2fd46554cc8ad9.csv (deflated 58%)
  W.W.W.W  adding: mtcars1.csv (deflated 48%)
    adding: mtcars2.csv (deflated 50%)
    adding: mtcars3.csv (deflated 47%)
  ..W..W.W.W.WW..W..W.W.W.WW.WWEWFW..WSWSWSWW.W..WW.W.W..W..W
  mapping: GHWIW..W
  matrix: W.W.W.W
  remote: S
  set_class: J
  suggestions: SWSWSW
  trust: ..W..W..W..W...WKW...WLW
  
  == Skipped =====================================================================
  1. tar export error for R < 4.0.3 ('test_compress.R:101:5') - Reason: getRversion() >= "4.0.3" is TRUE
  
  2. tar export error for R < 4.0.3 ('test_export_list.R:67:5') - Reason: getRversion() >= "4.0.3" is TRUE
  
  3. (code run outside of `test_that()`) ('test_extensions.R:2:1') - Reason: On CRAN
  
  4. Export to and import from matlab ('test_format_matlab.R:4:5') - Reason: failing mysteriously
  
  5. (code run outside of `test_that()`) ('test_format_ods.R:1:1') - Reason: readODS cannot be loaded
  
  6. (code run outside of `test_that()`) ('test_format_qs.R:1:1') - Reason: qs cannot be loaded
  
  7. import_list() preserves 'which' names when specified ods ('test_import_list.R:58:5') - Reason: readODS cannot be loaded
  
  8. URL #294 ('test_import_list.R:167:5') - Reason: On CRAN
  
  9. Universal dummy `which` #326 ('test_import_list.R:184:5') - Reason: readODS cannot be loaded
  
  10. Universal dummy `which` (Suggests) #326 ('test_import_list.R:196:5') - Reason: qs cannot be loaded
  
  11. (code run outside of `test_that()`) ('test_remote.R:1:1') - Reason: On CRAN
  
  12. uninstalled_formats() ('test_suggestions.R:2:5') - Reason: On CRAN
  
  13. show_unsupported_formats (in the fully supported environment) on CI ('test_suggestions.R:13:5') - Reason: On CRAN
  
  14. show_unsupported_formats (in the partial supported environment) on CI ('test_suggestions.R:22:5') - Reason: On CRAN
  
  == Warnings ====================================================================
  1. test characterize.default() ('test_characterize.R:9:5') - Changing language has no effect when envvar LC_ALL='C'
  
  2. (code run outside of `test_that()`) ('test_characterize.R:8:1') - Changing language has no effect when envvar LC_ALL='C'
  
  3. test characterize.default() ('test_characterize.R:13:5') - Changing language has no effect when envvar LC_ALL='C'
  
  4. (code run outside of `test_that()`) ('test_characterize.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  5. test factorize.data.frame() ('test_characterize.R:17:5') - Changing language has no effect when envvar LC_ALL='C'
  
  6. (code run outside of `test_that()`) ('test_characterize.R:16:1') - Changing language has no effect when envvar LC_ALL='C'
  
  7. test factorize.data.frame() ('test_characterize.R:21:5') - Changing language has no effect when envvar LC_ALL='C'
  
  8. (code run outside of `test_that()`) ('test_characterize.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  9. test factorize coerce_character ('test_characterize.R:25:5') - Changing language has no effect when envvar LC_ALL='C'
  
  10. test factorize coerce_character ('test_characterize.R:26:5') - Changing language has no effect when envvar LC_ALL='C'
  
  11. (code run outside of `test_that()`) ('test_characterize.R:24:1') - Changing language has no effect when envvar LC_ALL='C'
  
  12. (code run outside of `test_that()`) ('test_check_file.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  13. (code run outside of `test_that()`) ('test_check_file.R:27:1') - Changing language has no effect when envvar LC_ALL='C'
  
  14. (code run outside of `test_that()`) ('test_check_file.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  15. (code run outside of `test_that()`) ('test_check_file.R:50:1') - Changing language has no effect when envvar LC_ALL='C'
  
  16. (code run outside of `test_that()`) ('test_check_file.R:62:1') - Changing language has no effect when envvar LC_ALL='C'
  
  17. Recognize compressed file types ('test_compress.R:4:5') - Changing language has no effect when envvar LC_ALL='C'
  
  18. Recognize compressed file types ('test_compress.R:5:5') - Changing language has no effect when envvar LC_ALL='C'
  
  19. Recognize compressed file types ('test_compress.R:6:5') - Changing language has no effect when envvar LC_ALL='C'
  
  20. Recognize compressed file types ('test_compress.R:7:5') - Changing language has no effect when envvar LC_ALL='C'
  
  21. Recognize compressed file types ('test_compress.R:8:5') - Changing language has no effect when envvar LC_ALL='C'
  
  22. Recognize compressed file types ('test_compress.R:9:5') - Changing language has no effect when envvar LC_ALL='C'
  
  23. (code run outside of `test_that()`) ('test_compress.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  24. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  25. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  26. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  27. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  28. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  29. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  30. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  31. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  32. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  33. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  34. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  35. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  36. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  37. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  38. Export to compressed (zip, tar) / import ('test_compress.R:24:17') - Changing language has no effect when envvar LC_ALL='C'
  
  39. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  40. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  41. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  42. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  43. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  44. Export to compressed (zip, tar) / import ('test_compress.R:24:17') - Changing language has no effect when envvar LC_ALL='C'
  
  45. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  46. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  47. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  48. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  49. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  50. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  51. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  52. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  53. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  54. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  55. Export to compressed (zip, tar) / import ('test_compress.R:27:17') - Changing language has no effect when envvar LC_ALL='C'
  
  56. (code run outside of `test_that()`) ('test_compress.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  57. Multi-item zip ('test_compress.R:40:13') - Changing language has no effect when envvar LC_ALL='C'
  
  58. Multi-item zip ('test_compress.R:43:13') - Changing language has no effect when envvar LC_ALL='C'
  
  59. Multi-item zip ('test_compress.R:44:13') - Changing language has no effect when envvar LC_ALL='C'
  
  60. (code run outside of `test_that()`) ('test_compress.R:33:1') - Changing language has no effect when envvar LC_ALL='C'
  
  61. (code run outside of `test_that()`) ('test_compress.R:49:1') - Changing language has no effect when envvar LC_ALL='C'
  
  62. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  63. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  64. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  65. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  66. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  67. (code run outside of `test_that()`) ('test_compress.R:66:1') - Changing language has no effect when envvar LC_ALL='C'
  
  68. (code run outside of `test_that()`) ('test_compress.R:89:1') - Changing language has no effect when envvar LC_ALL='C'
  
  69. (code run outside of `test_that()`) ('test_compress.R:100:1') - Changing language has no effect when envvar LC_ALL='C'
  
  70. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  71. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  72. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  73. (code run outside of `test_that()`) ('test_compress.R:107:1') - Changing language has no effect when envvar LC_ALL='C'
  
  74. Relative path #438 ('test_compress.R:137:9') - Changing language has no effect when envvar LC_ALL='C'
  
  75. (code run outside of `test_that()`) ('test_compress.R:128:1') - Changing language has no effect when envvar LC_ALL='C'
  
  76. (code run outside of `test_that()`) ('test_compress.R:141:1') - Changing language has no effect when envvar LC_ALL='C'
  
  77. (code run outside of `test_that()`) ('test_convert.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  78. File conversion with arguments ('test_convert.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  79. File conversion with arguments ('test_convert.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  80. File conversion with arguments ('test_convert.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  81. (code run outside of `test_that()`) ('test_convert.R:14:1') - Changing language has no effect when envvar LC_ALL='C'
  
  82. (code run outside of `test_that()`) ('test_convert.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  83. (code run outside of `test_that()`) ('test_create_outfiles.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  84. (code run outside of `test_that()`) ('test_create_outfiles.R:17:1') - Changing language has no effect when envvar LC_ALL='C'
  
  85. (code run outside of `test_that()`) ('test_errors.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  86. (code run outside of `test_that()`) ('test_errors.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  87. (code run outside of `test_that()`) ('test_errors.R:19:1') - Changing language has no effect when envvar LC_ALL='C'
  
  88. (code run outside of `test_that()`) ('test_errors.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  89. Column widths printed for fixed-width format ('test_errors.R:34:9') - Changing language has no effect when envvar LC_ALL='C'
  
  90. (code run outside of `test_that()`) ('test_errors.R:32:1') - Changing language has no effect when envvar LC_ALL='C'
  
  91. (code run outside of `test_that()`) ('test_errors.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  92. export to nonexisting directory #347 ('test_export_corner_cases.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  93. export to nonexisting directory #347 ('test_export_corner_cases.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  94. (code run outside of `test_that()`) ('test_export_corner_cases.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  95. export to existing directory (contra previous one) #347 ('test_export_corner_cases.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  96. export to existing directory (contra previous one) #347 ('test_export_corner_cases.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  97. (code run outside of `test_that()`) ('test_export_corner_cases.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  98. export to nonexisting directory also for compressed file  #347 ('test_export_corner_cases.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  99. export to nonexisting directory also for compressed file  #347 ('test_export_corner_cases.R:25:9') - Changing language has no effect when envvar LC_ALL='C'
  
  100. (code run outside of `test_that()`) ('test_export_corner_cases.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  101. export_list() works ('test_export_list.R:10:9') - Import failed for 1 from mtcars.xlsx
  
  102. export_list() works ('test_export_list.R:10:9') - Import failed for 2 from mtcars.xlsx
  
  103. export_list() works ('test_export_list.R:10:9') - Import failed for 3 from mtcars.xlsx
  
  104. export_list() works ('test_export_list.R:15:9') - Export failed for element 1, filename: mtcars_3.csv
  
  105. export_list() works ('test_export_list.R:15:9') - Export failed for element 2, filename: mtcars_2.csv
  
  106. export_list() works ('test_export_list.R:15:9') - Export failed for element 3, filename: mtcars_1.csv
  
  107. export_list() works ('test_export_list.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  108. export_list() works ('test_export_list.R:16:9') - Export failed for element 1, filename: mtcars3.csv
  
  109. export_list() works ('test_export_list.R:16:9') - Export failed for element 2, filename: mtcars2.csv
  
  110. export_list() works ('test_export_list.R:16:9') - Export failed for element 3, filename: mtcars1.csv
  
  111. export_list() works ('test_export_list.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  112. export_list() works ('test_export_list.R:18:9') - Export failed for element 1, filename: file_1.csv
  
  113. export_list() works ('test_export_list.R:18:9') - Export failed for element 2, filename: file_2.csv
  
  114. export_list() works ('test_export_list.R:18:9') - Export failed for element 3, filename: file_3.csv
  
  115. export_list() works ('test_export_list.R:18:9') - path[1]="file_1.csv": No such file or directory
  
  116. export_list() works ('test_export_list.R:18:9') - path[2]="file_2.csv": No such file or directory
  
  117. export_list() works ('test_export_list.R:18:9') - path[3]="file_3.csv": No such file or directory
  
  118. (code run outside of `test_that()`) ('test_export_list.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  119. archive formats, #415 ('test_export_list.R:46:9') - invalid uid value replaced by that for user 'nobody'
  
  120. archive formats, #415 ('test_export_list.R:47:9') - invalid uid value replaced by that for user 'nobody'
  
  121. archive formats, #415 ('test_export_list.R:48:9') - invalid uid value replaced by that for user 'nobody'
  
  122. (code run outside of `test_that()`) ('test_export_list.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  123. List length of one, #385 ('test_export_list.R:62:9') - Changing language has no effect when envvar LC_ALL='C'
  
  124. (code run outside of `test_that()`) ('test_export_list.R:52:1') - Changing language has no effect when envvar LC_ALL='C'
  
  125. (code run outside of `test_that()`) ('test_export_list.R:66:1') - Changing language has no effect when envvar LC_ALL='C'
  
  126. Export / Import to .R dump file ('test_format_R.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  127. Export / Import to .R dump file ('test_format_R.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  128. Export / Import to .R dump file ('test_format_R.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  129. Export / Import to .R dump file ('test_format_R.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  130. (code run outside of `test_that()`) ('test_format_R.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  131. Weka (.arff) imports/exports ('test_format_arff.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  132. Weka (.arff) imports/exports ('test_format_arff.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  133. (code run outside of `test_that()`) ('test_format_arff.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  134. Export to CSV ('test_format_csv.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  135. (code run outside of `test_that()`) ('test_format_csv.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  136. Export (Append) to CSV ('test_format_csv.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  137. Export (Append) to CSV ('test_format_csv.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  138. (code run outside of `test_that()`) ('test_format_csv.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  139. (code run outside of `test_that()`) ('test_format_csv.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  140. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:29:9') - Changing language has no effect when envvar LC_ALL='C'
  
  141. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:31:9') - Changing language has no effect when envvar LC_ALL='C'
  
  142. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:34:9') - Changing language has no effect when envvar LC_ALL='C'
  
  143. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  144. (code run outside of `test_that()`) ('test_format_csv.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  145. Export to and Import from CSV2 ('test_format_csv.R:42:9') - Changing language has no effect when envvar LC_ALL='C'
  
  146. Export to and Import from CSV2 ('test_format_csv.R:43:9') - Changing language has no effect when envvar LC_ALL='C'
  
  147. (code run outside of `test_that()`) ('test_format_csv.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  148. Export to and Import from TSV with CSV extension ('test_format_csv.R:50:9') - Changing language has no effect when envvar LC_ALL='C'
  
  149. Export to and Import from TSV with CSV extension ('test_format_csv.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  150. Export to and Import from TSV with CSV extension ('test_format_csv.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  151. Export to and Import from TSV with CSV extension ('test_format_csv.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  152. Export to and Import from TSV with CSV extension ('test_format_csv.R:54:9') - Changing language has no effect when envvar LC_ALL='C'
  
  153. Export to and Import from TSV with CSV extension ('test_format_csv.R:55:9') - Changing language has no effect when envvar LC_ALL='C'
  
  154. Export to and Import from TSV with CSV extension ('test_format_csv.R:56:9') - Changing language has no effect when envvar LC_ALL='C'
  
  155. (code run outside of `test_that()`) ('test_format_csv.R:47:1') - Changing language has no effect when envvar LC_ALL='C'
  
  156. (code run outside of `test_that()`) ('test_format_csv.R:60:1') - Changing language has no effect when envvar LC_ALL='C'
  
  157. (code run outside of `test_that()`) ('test_format_csv.R:68:1') - Changing language has no effect when envvar LC_ALL='C'
  
  158. Export to and import from CSVY ('test_format_csvy.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  159. Export to and import from CSVY ('test_format_csvy.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  160. (code run outside of `test_that()`) ('test_format_csvy.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  161. Export to and import from XBASE (.dbf) ('test_format_dbf.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  162. Export to and import from XBASE (.dbf) ('test_format_dbf.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  163. Export to and import from XBASE (.dbf) ('test_format_dbf.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  164. (code run outside of `test_that()`) ('test_format_dbf.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  165. Import from DIF ('test_format_dif.R:3:5') - Changing language has no effect when envvar LC_ALL='C'
  
  166. (code run outside of `test_that()`) ('test_format_dif.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  167. (code run outside of `test_that()`) ('test_format_dta.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  168. (code run outside of `test_that()`) ('test_format_dta.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  169. (code run outside of `test_that()`) ('test_format_dta.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  170. (code run outside of `test_that()`) ('test_format_dta.R:34:1') - Changing language has no effect when envvar LC_ALL='C'
  
  171. Import from EViews ('test_format_eviews.R:3:5') - Changing language has no effect when envvar LC_ALL='C'
  
  172. (code run outside of `test_that()`) ('test_format_eviews.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  173. (code run outside of `test_that()`) ('test_format_external_packages.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  174. (code run outside of `test_that()`) ('test_format_external_packages.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  175. Export to and import from feather ('test_format_feather.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  176. Export to and import from feather ('test_format_feather.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  177. (code run outside of `test_that()`) ('test_format_feather.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  178. Import from Fortran ('test_format_fortran.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  179. (code run outside of `test_that()`) ('test_format_fortran.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  180. Export to and import from fst ('test_format_fst.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  181. Export to and import from fst ('test_format_fst.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  182. (code run outside of `test_that()`) ('test_format_fst.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  183. Export to and import from FWF .fwf ('test_format_fwf.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  184. (code run outside of `test_that()`) ('test_format_fwf.R:5:1') - Changing language has no effect when envvar LC_ALL='C'
  
  185. Export to and import from FWF .txt ('test_format_fwf.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  186. (code run outside of `test_that()`) ('test_format_fwf.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  187. (code run outside of `test_that()`) ('test_format_fwf.R:28:1') - Changing language has no effect when envvar LC_ALL='C'
  
  188. Export to and import from HTML ('test_format_html.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  189. Export to and import from HTML ('test_format_html.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  190. (code run outside of `test_that()`) ('test_format_html.R:15:1') - Changing language has no effect when envvar LC_ALL='C'
  
  191. Export to HTML with ampersands ('test_format_html.R:30:9') - Changing language has no effect when envvar LC_ALL='C'
  
  192. (code run outside of `test_that()`) ('test_format_html.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  193. Import from HTML ('test_format_html.R:37:5') - Changing language has no effect when envvar LC_ALL='C'
  
  194. Import from HTML ('test_format_html.R:38:5') - Changing language has no effect when envvar LC_ALL='C'
  
  195. (code run outside of `test_that()`) ('test_format_html.R:35:1') - Changing language has no effect when envvar LC_ALL='C'
  
  196. Import from HTML with multiple tbody elements ('test_format_html.R:42:5') - Changing language has no effect when envvar LC_ALL='C'
  
  197. Import from HTML with multiple tbody elements ('test_format_html.R:43:5') - Changing language has no effect when envvar LC_ALL='C'
  
  198. Import from HTML with multiple tbody elements ('test_format_html.R:44:5') - Changing language has no effect when envvar LC_ALL='C'
  
  199. Import from HTML with multiple tbody elements ('test_format_html.R:45:5') - Changing language has no effect when envvar LC_ALL='C'
  
  200. (code run outside of `test_that()`) ('test_format_html.R:41:1') - Changing language has no effect when envvar LC_ALL='C'
  
  201. (code run outside of `test_that()`) ('test_format_html.R:48:1') - Changing language has no effect when envvar LC_ALL='C'
  
  202. Export to and import from JSON ('test_format_json.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  203. Export to and import from JSON ('test_format_json.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  204. (code run outside of `test_that()`) ('test_format_json.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  205. Export to JSON (non-data frame) ('test_format_json.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  206. Export to JSON (non-data frame) ('test_format_json.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  207. Export to JSON (non-data frame) ('test_format_json.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  208. Export to JSON (non-data frame) ('test_format_json.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  209. (code run outside of `test_that()`) ('test_format_json.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  210. (code run outside of `test_that()`) ('test_format_json.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  211. (code run outside of `test_that()`) ('test_format_matlab.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  212. Export to and import from parquet ('test_format_parquet.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  213. Export to and import from parquet ('test_format_parquet.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  214. (code run outside of `test_that()`) ('test_format_parquet.R:4:1') - Changing language has no effect when envvar LC_ALL='C'
  
  215. Export to and import from PSV ('test_format_psv.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  216. Export to and import from PSV ('test_format_psv.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  217. (code run outside of `test_that()`) ('test_format_psv.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  218. (code run outside of `test_that()`) ('test_format_psv.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  219. Export to and import from pzfx ('test_format_pzfx.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  220. Export to and import from pzfx ('test_format_pzfx.R:10:9') - Changing language has no effect when envvar LC_ALL='C'
  
  221. Export to and import from pzfx ('test_format_pzfx.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  222. Export to and import from pzfx ('test_format_pzfx.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  223. Export to and import from pzfx ('test_format_pzfx.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  224. (code run outside of `test_that()`) ('test_format_pzfx.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  225. Export to and import from qs2 ('test_format_qs2.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  226. Export to and import from qs2 ('test_format_qs2.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  227. (code run outside of `test_that()`) ('test_format_qs2.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  228. Export to and import from Rdata ('test_format_rdata.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  229. Export to and import from Rdata ('test_format_rdata.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  230. Export to and import from Rdata ('test_format_rdata.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  231. Export to and import from Rdata ('test_format_rdata.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  232. Export to and import from Rdata ('test_format_rdata.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  233. Export to and import from Rdata ('test_format_rdata.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  234. Export to and import from Rdata ('test_format_rdata.R:21:9') - Changing language has no effect when envvar LC_ALL='C'
  
  235. Export to and import from Rdata ('test_format_rdata.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  236. Export to and import from Rdata ('test_format_rdata.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  237. (code run outside of `test_that()`) ('test_format_rdata.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  238. Export to and import from rda ('test_format_rdata.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  239. Export to and import from rda ('test_format_rdata.R:36:9') - Changing language has no effect when envvar LC_ALL='C'
  
  240. Export to and import from rda ('test_format_rdata.R:37:9') - Changing language has no effect when envvar LC_ALL='C'
  
  241. Export to and import from rda ('test_format_rdata.R:44:9') - Changing language has no effect when envvar LC_ALL='C'
  
  242. Export to and import from rda ('test_format_rdata.R:45:9') - Changing language has no effect when envvar LC_ALL='C'
  
  243. Export to and import from rda ('test_format_rdata.R:46:9') - Changing language has no effect when envvar LC_ALL='C'
  
  244. Export to and import from rda ('test_format_rdata.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  245. Export to and import from rda ('test_format_rdata.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  246. Export to and import from rda ('test_format_rdata.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  247. (code run outside of `test_that()`) ('test_format_rdata.R:31:1') - Changing language has no effect when envvar LC_ALL='C'
  
  248. Export to and import from rds ('test_format_rds.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  249. Export to and import from rds ('test_format_rds.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  250. (code run outside of `test_that()`) ('test_format_rds.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  251. Export to rds (non-data frame) ('test_format_rds.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  252. Export to rds (non-data frame) ('test_format_rds.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  253. Export to rds (non-data frame) ('test_format_rds.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  254. (code run outside of `test_that()`) ('test_format_rds.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  255. (code run outside of `test_that()`) ('test_format_sas.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  256. (code run outside of `test_that()`) ('test_format_sas.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  257. (code run outside of `test_that()`) ('test_format_sav.R:2:1') - Changing language has no effect when envvar LC_ALL='C'
  
  258. (code run outside of `test_that()`) ('test_format_sav.R:36:1') - Changing language has no effect when envvar LC_ALL='C'
  
  259. Import from Systat ('test_format_syd.R:4:5') - Changing language has no effect when envvar LC_ALL='C'
  
  260. (code run outside of `test_that()`) ('test_format_syd.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  261. Export to and import from TSV ('test_format_tsv.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  262. Export to and import from TSV ('test_format_tsv.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  263. (code run outside of `test_that()`) ('test_format_tsv.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  264. (code run outside of `test_that()`) ('test_format_tsv.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  265. Export to Excel (.xlsx) ('test_format_xls.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  266. (code run outside of `test_that()`) ('test_format_xls.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  267. (code run outside of `test_that()`) ('test_format_xls.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  268. (code run outside of `test_that()`) ('test_format_xls.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  269. (code run outside of `test_that()`) ('test_format_xls.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  270. (code run outside of `test_that()`) ('test_format_xls.R:47:1') - Changing language has no effect when envvar LC_ALL='C'
  
  271. (code run outside of `test_that()`) ('test_format_xls.R:53:1') - Changing language has no effect when envvar LC_ALL='C'
  
  272. (code run outside of `test_that()`) ('test_format_xls.R:74:1') - Changing language has no effect when envvar LC_ALL='C'
  
  273. Export to and import from XML ('test_format_xml.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  274. Export to and import from XML ('test_format_xml.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  275. (code run outside of `test_that()`) ('test_format_xml.R:15:1') - Changing language has no effect when envvar LC_ALL='C'
  
  276. (code run outside of `test_that()`) ('test_format_xml.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  277. Export to and import from YAML ('test_format_yml.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  278. Export to and import from YAML ('test_format_yml.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  279. (code run outside of `test_that()`) ('test_format_yml.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  280. (code run outside of `test_that()`) ('test_format_yml.R:13:1') - Changing language has no effect when envvar LC_ALL='C'
  
  281. (code run outside of `test_that()`) ('test_guess.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  282. (code run outside of `test_that()`) ('test_guess.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  283. Export without file specified ('test_guess.R:24:9') - Changing language has no effect when envvar LC_ALL='C'
  
  284. (code run outside of `test_that()`) ('test_guess.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  285. (code run outside of `test_that()`) ('test_guess.R:28:1') - Changing language has no effect when envvar LC_ALL='C'
  
  286. (code run outside of `test_that()`) ('test_identical.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  287. (code run outside of `test_that()`) ('test_identical.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  288. (code run outside of `test_that()`) ('test_identical.R:18:1') - Changing language has no effect when envvar LC_ALL='C'
  
  289. (code run outside of `test_that()`) ('test_identical.R:25:1') - Changing language has no effect when envvar LC_ALL='C'
  
  290. (code run outside of `test_that()`) ('test_identical.R:32:1') - Changing language has no effect when envvar LC_ALL='C'
  
  291. (code run outside of `test_that()`) ('test_identical.R:38:1') - Changing language has no effect when envvar LC_ALL='C'
  
  292. Data identical (optional arguments) ('test_identical.R:54:9') - Changing language has no effect when envvar LC_ALL='C'
  
  293. (code run outside of `test_that()`) ('test_identical.R:49:1') - Changing language has no effect when envvar LC_ALL='C'
  
  294. Data identical (import_list) ('test_import_list.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  295. Data identical (import_list) ('test_import_list.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  296. Data identical (import_list) ('test_import_list.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  297. (code run outside of `test_that()`) ('test_import_list.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  298. Import multi-object .Rdata in import_list() ('test_import_list.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  299. Import multi-object .Rdata in import_list() ('test_import_list.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  300. (code run outside of `test_that()`) ('test_import_list.R:13:1') - Changing language has no effect when envvar LC_ALL='C'
  
  301. Import multiple HTML tables in import_list() ('test_import_list.R:24:5') - Changing language has no effect when envvar LC_ALL='C'
  
  302. Import multiple HTML tables in import_list() ('test_import_list.R:25:5') - Changing language has no effect when envvar LC_ALL='C'
  
  303. Import multiple HTML tables in import_list() ('test_import_list.R:26:5') - Changing language has no effect when envvar LC_ALL='C'
  
  304. Import multiple HTML tables in import_list() ('test_import_list.R:27:5') - Changing language has no effect when envvar LC_ALL='C'
  
  305. (code run outside of `test_that()`) ('test_import_list.R:22:1') - Changing language has no effect when envvar LC_ALL='C'
  
  306. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  307. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:36:9') - Changing language has no effect when envvar LC_ALL='C'
  
  308. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:37:9') - Changing language has no effect when envvar LC_ALL='C'
  
  309. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:38:9') - Changing language has no effect when envvar LC_ALL='C'
  
  310. (code run outside of `test_that()`) ('test_import_list.R:30:1') - Changing language has no effect when envvar LC_ALL='C'
  
  311. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Import failed for 1 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  312. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Import failed for 2 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  313. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Changing language has no effect when envvar LC_ALL='C'
  
  314. import_list() preserves 'which' names when specified ('test_import_list.R:46:9') - Import failed for 1 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  315. import_list() preserves 'which' names when specified ('test_import_list.R:46:9') - Changing language has no effect when envvar LC_ALL='C'
  
  316. import_list() preserves 'which' names when specified ('test_import_list.R:47:9') - Import failed for a from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  317. import_list() preserves 'which' names when specified ('test_import_list.R:47:9') - Changing language has no effect when envvar LC_ALL='C'
  
  318. import_list() preserves 'which' names when specified ('test_import_list.R:48:9') - Import failed for 2 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  319. import_list() preserves 'which' names when specified ('test_import_list.R:48:9') - Changing language has no effect when envvar LC_ALL='C'
  
  320. import_list() preserves 'which' names when specified ('test_import_list.R:49:9') - Import failed for b from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  321. import_list() preserves 'which' names when specified ('test_import_list.R:49:9') - Changing language has no effect when envvar LC_ALL='C'
  
  322. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Import failed for 1 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  323. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Import failed for 2 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  324. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Changing language has no effect when envvar LC_ALL='C'
  
  325. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Import failed for 2 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  326. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Import failed for 1 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  327. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  328. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Import failed for a from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  329. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Import failed for b from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  330. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  331. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Import failed for b from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  332. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Import failed for a from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
  
  333. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  334. (code run outside of `test_that()`) ('test_import_list.R:42:1') - Changing language has no effect when envvar LC_ALL='C'
  
  335. (code run outside of `test_that()`) ('test_import_list.R:57:1') - Changing language has no effect when envvar LC_ALL='C'
  
  336. Import single file via import_list() ('test_import_list.R:77:9') - Changing language has no effect when envvar LC_ALL='C'
  
  337. (code run outside of `test_that()`) ('test_import_list.R:74:1') - Changing language has no effect when envvar LC_ALL='C'
  
  338. Import single file from zip via import_list() ('test_import_list.R:84:9') - Changing language has no effect when envvar LC_ALL='C'
  
  339. Import single file from zip via import_list() ('test_import_list.R:85:9') - Changing language has no effect when envvar LC_ALL='C'
  
  340. Import single file from zip via import_list() ('test_import_list.R:87:9') - Changing language has no effect when envvar LC_ALL='C'
  
  341. (code run outside of `test_that()`) ('test_import_list.R:81:1') - Changing language has no effect when envvar LC_ALL='C'
  
  342. Import multiple files from zip via import_list() ('test_import_list.R:96:9') - Changing language has no effect when envvar LC_ALL='C'
  
  343. Import multiple files from zip via import_list() ('test_import_list.R:98:9') - Changing language has no effect when envvar LC_ALL='C'
  
  344. Import multiple files from zip via import_list() ('test_import_list.R:99:9') - Changing language has no effect when envvar LC_ALL='C'
  
  345. Import multiple files from zip via import_list() ('test_import_list.R:100:9') - Changing language has no effect when envvar LC_ALL='C'
  
  346. (code run outside of `test_that()`) ('test_import_list.R:91:1') - Changing language has no effect when envvar LC_ALL='C'
  
  347. Import multiple files from zip via import_list() ('test_import_list.R:108:9') - invalid uid value replaced by that for user 'nobody'
  
  348. Import multiple files from zip via import_list() ('test_import_list.R:110:9') - Changing language has no effect when envvar LC_ALL='C'
  
  349. Import multiple files from zip via import_list() ('test_import_list.R:112:9') - Changing language has no effect when envvar LC_ALL='C'
  
  350. Import multiple files from zip via import_list() ('test_import_list.R:113:9') - Changing language has no effect when envvar LC_ALL='C'
  
  351. Import multiple files from zip via import_list() ('test_import_list.R:114:9') - Changing language has no effect when envvar LC_ALL='C'
  
  352. (code run outside of `test_that()`) ('test_import_list.R:104:1') - Changing language has no effect when envvar LC_ALL='C'
  
  353. Using setclass in import_list() ('test_import_list.R:122:9') - Changing language has no effect when envvar LC_ALL='C'
  
  354. Using setclass in import_list() ('test_import_list.R:123:9') - Import failed for /tmp/th798/26735458/RtmpvfFzwK/file2fd4655f0aaf4.rds
  
  355. Using setclass in import_list() ('test_import_list.R:123:9') - Import failed for /tmp/th798/26735458/RtmpvfFzwK/file2fd4655f0aaf4.rds
  
  356. (code run outside of `test_that()`) ('test_import_list.R:118:1') - Changing language has no effect when envvar LC_ALL='C'
  
  357. (code run outside of `test_that()`) ('test_import_list.R:128:1') - Changing language has no effect when envvar LC_ALL='C'
  
  358. (code run outside of `test_that()`) ('test_import_list.R:154:1') - Changing language has no effect when envvar LC_ALL='C'
  
  359. (code run outside of `test_that()`) ('test_import_list.R:166:1') - Changing language has no effect when envvar LC_ALL='C'
  
  360. (code run outside of `test_that()`) ('test_import_list.R:183:1') - Changing language has no effect when envvar LC_ALL='C'
  
  361. (code run outside of `test_that()`) ('test_import_list.R:195:1') - Changing language has no effect when envvar LC_ALL='C'
  
  362. Informative message when files are not found #389 ('test_import_list.R:214:9') - Changing language has no effect when envvar LC_ALL='C'
  
  363. Informative message when files are not found #389 ('test_import_list.R:215:9') - Changing language has no effect when envvar LC_ALL='C'
  
  364. (code run outside of `test_that()`) ('test_import_list.R:211:1') - Changing language has no effect when envvar LC_ALL='C'
  
  365. Missing files and rbind ('test_import_list.R:223:9') - Changing language has no effect when envvar LC_ALL='C'
  
  366. Missing files and rbind ('test_import_list.R:224:9') - Changing language has no effect when envvar LC_ALL='C'
  
  367. Missing files and rbind ('test_import_list.R:225:9') - Changing language has no effect when envvar LC_ALL='C'
  
  368. Missing files and rbind ('test_import_list.R:227:9') - Changing language has no effect when envvar LC_ALL='C'
  
  369. (code run outside of `test_that()`) ('test_import_list.R:220:1') - Changing language has no effect when envvar LC_ALL='C'
  
  370. (code run outside of `test_that()`) ('test_mapping.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  371. (code run outside of `test_that()`) ('test_mapping.R:16:1') - Changing language has no effect when envvar LC_ALL='C'
  
  372. (code run outside of `test_that()`) ('test_mapping.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  373. Export matrix to and import from CSV ('test_matrix.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  374. Export matrix to and import from CSV ('test_matrix.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  375. Export matrix to and import from CSV ('test_matrix.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  376. (code run outside of `test_that()`) ('test_matrix.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  377. (code run outside of `test_that()`) ('test_suggestions.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  378. (code run outside of `test_that()`) ('test_suggestions.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  379. (code run outside of `test_that()`) ('test_suggestions.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  380. (code run outside of `test_that()`) ('test_trust.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  381. (code run outside of `test_that()`) ('test_trust.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  382. (code run outside of `test_that()`) ('test_trust.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  383. (code run outside of `test_that()`) ('test_trust.R:31:1') - Changing language has no effect when envvar LC_ALL='C'
  
  384. (code run outside of `test_that()`) ('test_trust.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  385. (code run outside of `test_that()`) ('test_trust.R:55:1') - Changing language has no effect when envvar LC_ALL='C'
  
  386. (code run outside of `test_that()`) ('test_trust.R:63:1') - Changing language has no effect when envvar LC_ALL='C'
  
  387. (code run outside of `test_that()`) ('test_trust.R:73:1') - Changing language has no effect when envvar LC_ALL='C'
  
  == Failed ======================================================================
  -- 1. Error ('test_compress.R:53:13'): Export to compressed (gz, bz2) / import -
  Error in `regexpr(as.character(pattern), text, ignore.case, perl, fixed, 
      useBytes)`: NA in coercion to boolean
  Backtrace:
       x
    1. \-withr::with_tempfile(...) at test_compress.R:52:9
    2.   \-base::eval(substitute(code), envir = env)
    3.     \-base::eval(substitute(code), envir = env)
    4.       \-rio::export(iris, iris_path) at test_compress.R:53:13
    5.         \-rio:::compress_out(cfile = cfile, filename = file, type = compress)
    6.           \-rio:::.compress_rutils(filename, cfile, ext = ext)
    7.             +-R.utils::compressFile(...)
    8.             \-R.utils::compressFile.default(...)
    9.               +-R.utils::popTemporaryFile(destnameT)
   10.               \-R.utils::popTemporaryFile.default(destnameT)
   11.                 \-base::regexpr(pattern, "", pathnameT)
  
  -- 2. Failure ('test_compress.R:72:13'): Prevent the reuse of `which` for zip an
  `import(data_path)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path), NA) at test_compress.R:72:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 3. Failure ('test_compress.R:74:13'): Prevent the reuse of `which` for zip an
  `import(data_path, which = raw_file)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path, which = raw_file), NA) at test_compress.R:74:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path, which = raw_file)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 4. Failure ('test_compress.R:72:13'): Prevent the reuse of `which` for zip an
  `import(data_path)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path), NA) at test_compress.R:72:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 5. Failure ('test_compress.R:74:13'): Prevent the reuse of `which` for zip an
  `import(data_path, which = raw_file)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path, which = raw_file), NA) at test_compress.R:74:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path, which = raw_file)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 6. Failure ('test_compress.R:72:13'): Prevent the reuse of `which` for zip an
  `import(data_path)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path), NA) at test_compress.R:72:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 7. Failure ('test_compress.R:74:13'): Prevent the reuse of `which` for zip an
  `import(data_path, which = raw_file)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path, which = raw_file), NA) at test_compress.R:74:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path, which = raw_file)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 8. Failure ('test_compress.R:72:13'): Prevent the reuse of `which` for zip an
  `import(data_path)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path), NA) at test_compress.R:72:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 9. Failure ('test_compress.R:74:13'): Prevent the reuse of `which` for zip an
  `import(data_path, which = raw_file)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path, which = raw_file), NA) at test_compress.R:74:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path, which = raw_file)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 10. Failure ('test_compress.R:72:13'): Prevent the reuse of `which` for zip a
  `import(data_path)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path), NA) at test_compress.R:72:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
    ... and 37 more
  
  
  Maximum number of 10 failures reached, some test results may be missing.
  
  == DONE ========================================================================
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'extension.Rmd' using rmarkdown
--- finished re-building 'extension.Rmd'

--- re-building 'labelled.Rmd' using rmarkdown

Quitting from labelled.Rmd:17-20 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'haven' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
    x
 1. \-base::library(haven)
 2.   \-base::tryCatch(...)
 3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         \-value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'labelled.Rmd' failed with diagnostics:
package or namespace load failed for 'haven' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'labelled.Rmd'

--- re-building 'philosophy.Rmd' using rmarkdown
--- finished re-building 'philosophy.Rmd'

--- re-building 'remap.Rmd' using rmarkdown

Quitting from remap.Rmd:28-32 [map1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. +-rio::import("example.xlsx", which = "mtcars")
  2. | +-rio:::.import(file = file, which = which, ...)
  3. | \-rio:::.import.rio_xlsx(file = file, which = which, ...)
  4. |   \-rio:::.remap_tidy_convention(...)
  5. |     \-rio:::.docall(...)
  6. |       +-R.utils::doCall(...)
  7. |       +-R.utils::doCall.default(...)
  8. |       | \-base::do.call(.fcn, args = args, envir = envir)
  9. |       \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = "mtcars", col_names = TRUE)
 10. |         \-readxl:::read_excel_(...)
 11. |           \-readxl:::set_readxl_names(...)
 12. \-base::loadNamespace(x)
 13.   +-base::namespaceImportFrom(...)
 14.   | \-base::asNamespace(ns)
 15.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 16.     +-base::namespaceImportFrom(...)
 17.     | \-base::asNamespace(ns)
 18.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 19.       \-base::library.dynam(lib, package, package.lib)
 20.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'remap.Rmd' failed with diagnostics:
unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'remap.Rmd'

--- re-building 'rio.Rmd' using rmarkdown

Quitting from rio.Rmd:68-74 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. +-rio::export(mtcars, "mtcars.dta")
  2. | +-rio:::.export(file = file, x = x, ...)
  3. | \-rio:::.export.rio_dta(file = file, x = x, ...)
  4. |   \-rio:::.docall(haven::write_dta, ..., args = list(data = x, path = file))
  5. |     \-R.utils::doCall(...)
  6. \-base::loadNamespace(x)
  7.   +-base::namespaceImportFrom(...)
  8.   | \-base::asNamespace(ns)
  9.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 10.     +-base::namespaceImportFrom(...)
 11.     | \-base::asNamespace(ns)
 12.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 13.       +-base::namespaceImportFrom(...)
 14.       | \-base::asNamespace(ns)
 15.       \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 16.         \-base::library.dynam(lib, package, package.lib)
 17.           \-base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rio.Rmd' failed with diagnostics:
unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'rio.Rmd'

SUMMARY: processing the following files failed:
  'labelled.Rmd' 'remap.Rmd' 'rio.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs, 1 NOTE
See
  '/tmp/th798/26735458/R-devel/1231/rio.Rcheck/00check.log'
for details.

[1] "2026-01-30 03:45:37 MST"
[1] "2026-01-30 03:45:37 MST"
Installing package into '/tmp/th798/26735458/R-devel/1231/library'
(as 'lib' is unspecified)
Warning: invalid package '/scratch/th798/data.table-revdeps/2026-01-30/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz'
Error: ERROR: no packages specified
[1] "2026-01-30 03:45:37 MST"
* using log directory '/tmp/th798/26735458/R-devel/1231/rio.Rcheck'
* using R Under development (unstable) (2026-01-29 r89354)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'rio/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rio' version '1.2.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Packages suggested but not available for checking: 'readODS', 'qs'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'rio' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'readODS'
Unknown package 'qs' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'rio-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: convert
> ### Title: Convert from one file format to another
> ### Aliases: convert
> 
> ### ** Examples
> 
> ## For demo, a temp. file path is created with the file extension .dta (Stata)
> dta_file <- tempfile(fileext = ".dta")
> ## .csv
> csv_file <- tempfile(fileext = ".csv")
> ## .xlsx
> xlsx_file <- tempfile(fileext = ".xlsx")
> 
> 
> ## Create a Stata data file
> export(mtcars, dta_file)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
Calls: export ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  > library("rio")
  > test_check("rio", reporter = "summary")
  characterize: 
  characterize()/factorize(): W.WW.WW.WW.WW.W.W
  check_file: ..................W.....W....W.....W....W
  compress: 
  Compressed files: W.W.W.W.W.W.W  adding: file302b694ac9e492.csv (deflated 78%)
  W.W.W.W.WW.W.W.W.WW.W.W.W.W.WW.W.W.W.W.WW.W.W.W.WW.W.W.W.W.W  adding: mtcars1.csv (deflated 48%)
    adding: mtcars2.csv (deflated 50%)
    adding: mtcars3.csv (deflated 47%)
  W...W.W.W1W  adding: file302b693154c179.xlsx (deflated 11%)
  23.W45/usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W67/usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W89/usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .Wab/usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .Wcd/usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .eW........WSW  adding: tmp/th798/26735458/RtmpRNjo6Y/file302b6999d896e.csv (stored 0%)
  .W.W.W.W  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  W.W..W
  convert: fWW.W.W.WgW
  create_outfiles: ...W.....W
  errors: .W....W..W.WW..W.W
  export_corner_cases: W..W.WW..W.WW.hWiW
  export_list: WWW..WWWW.WWWW.WWWWWW	zip warning: name not matched: file_1.csv
  	zip warning: name not matched: file_2.csv
  	zip warning: name not matched: file_3.csv
  
  zip error: Nothing to do! (archive.zip)
  jW..  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  .W.W.W.W....W.WSW
  extensions: S
  format_R: W.W.W.W.W
  format_arff: W.W.W
  format_csv: W.WW.W.W.WW.W.W.W.WW.W.WW.W.W.W.W.W.W.W..WkW
  format_csvy: W.W.W
  format_dbf: W.W.W.W
  format_dif: W.W
  format_dta: lWmWnWoW
  format_eviews: W.W
  format_external_packages: ...........W....W
  format_feather: W.W.W
  format_fortran: W.W
  format_fst: W.W.W
  format_fwf: W.pWW.qWrW
  format_html: W.W.WW.WW.W.WW.W.W.W.W...............W
  format_json: W.W.WW.W.W.W.W.W
  format_matlab: SW
  format_mtp: 
  format_ods: S
  format_parquet: W.W.W
  format_psv: W.W.W..W
  format_pzfx: W.W.W.W.W.W
  format_qs: S
  format_qs2: W.W.W
  format_rdata: W.W.W.W.W.W.W.W.W..WW.W.W.W.W.W.W.W.W..W
  format_rds: W.W.WW.W.W.W
  format_rec: 
  format_sas: sWtW
  format_sav: uWvW
  format_syd: W.W
  format_tsv: W.W.W..W
  format_xls: W.wW.W.xWyWzWAW.W
  format_xml: W.W.W...............W
  format_yml: W.W...WBW
  gather_attrs: Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  
  guess: .....W........WW.W..W
  identical: ...W....W.WCWDW....W..W.W
  import_list: .W.W.W.WW.W.WW.W.W.W.WW.W.W.W.WWWW.WW.WW.WW.WW.WWW.WWW.WWW.WWW.WSWW.W  adding: file302b697064f587.csv (deflated 58%)
  W.W.W.W  adding: mtcars1.csv (deflated 48%)
    adding: mtcars2.csv (deflated 50%)
    adding: mtcars3.csv (deflated 47%)
  ..W..W.W.W.WW..W..W.W.W.WW.WWEWFW..WSWSWSWW.W..WW.W.W..W..W
  mapping: GHWIW..W
  matrix: W.W.W.W
  remote: S
  set_class: J
  suggestions: SWSWSW
  trust: ..W..W..W..W...WKW...WLW
  
  == Skipped =====================================================================
  1. tar export error for R < 4.0.3 ('test_compress.R:101:5') - Reason: getRversion() >= "4.0.3" is TRUE
  
  2. tar export error for R < 4.0.3 ('test_export_list.R:67:5') - Reason: getRversion() >= "4.0.3" is TRUE
  
  3. (code run outside of `test_that()`) ('test_extensions.R:2:1') - Reason: On CRAN
  
  4. Export to and import from matlab ('test_format_matlab.R:4:5') - Reason: failing mysteriously
  
  5. (code run outside of `test_that()`) ('test_format_ods.R:1:1') - Reason: readODS cannot be loaded
  
  6. (code run outside of `test_that()`) ('test_format_qs.R:1:1') - Reason: qs cannot be loaded
  
  7. import_list() preserves 'which' names when specified ods ('test_import_list.R:58:5') - Reason: readODS cannot be loaded
  
  8. URL #294 ('test_import_list.R:167:5') - Reason: On CRAN
  
  9. Universal dummy `which` #326 ('test_import_list.R:184:5') - Reason: readODS cannot be loaded
  
  10. Universal dummy `which` (Suggests) #326 ('test_import_list.R:196:5') - Reason: qs cannot be loaded
  
  11. (code run outside of `test_that()`) ('test_remote.R:1:1') - Reason: On CRAN
  
  12. uninstalled_formats() ('test_suggestions.R:2:5') - Reason: On CRAN
  
  13. show_unsupported_formats (in the fully supported environment) on CI ('test_suggestions.R:13:5') - Reason: On CRAN
  
  14. show_unsupported_formats (in the partial supported environment) on CI ('test_suggestions.R:22:5') - Reason: On CRAN
  
  == Warnings ====================================================================
  1. test characterize.default() ('test_characterize.R:9:5') - Changing language has no effect when envvar LC_ALL='C'
  
  2. (code run outside of `test_that()`) ('test_characterize.R:8:1') - Changing language has no effect when envvar LC_ALL='C'
  
  3. test characterize.default() ('test_characterize.R:13:5') - Changing language has no effect when envvar LC_ALL='C'
  
  4. (code run outside of `test_that()`) ('test_characterize.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  5. test factorize.data.frame() ('test_characterize.R:17:5') - Changing language has no effect when envvar LC_ALL='C'
  
  6. (code run outside of `test_that()`) ('test_characterize.R:16:1') - Changing language has no effect when envvar LC_ALL='C'
  
  7. test factorize.data.frame() ('test_characterize.R:21:5') - Changing language has no effect when envvar LC_ALL='C'
  
  8. (code run outside of `test_that()`) ('test_characterize.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  9. test factorize coerce_character ('test_characterize.R:25:5') - Changing language has no effect when envvar LC_ALL='C'
  
  10. test factorize coerce_character ('test_characterize.R:26:5') - Changing language has no effect when envvar LC_ALL='C'
  
  11. (code run outside of `test_that()`) ('test_characterize.R:24:1') - Changing language has no effect when envvar LC_ALL='C'
  
  12. (code run outside of `test_that()`) ('test_check_file.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  13. (code run outside of `test_that()`) ('test_check_file.R:27:1') - Changing language has no effect when envvar LC_ALL='C'
  
  14. (code run outside of `test_that()`) ('test_check_file.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  15. (code run outside of `test_that()`) ('test_check_file.R:50:1') - Changing language has no effect when envvar LC_ALL='C'
  
  16. (code run outside of `test_that()`) ('test_check_file.R:62:1') - Changing language has no effect when envvar LC_ALL='C'
  
  17. Recognize compressed file types ('test_compress.R:4:5') - Changing language has no effect when envvar LC_ALL='C'
  
  18. Recognize compressed file types ('test_compress.R:5:5') - Changing language has no effect when envvar LC_ALL='C'
  
  19. Recognize compressed file types ('test_compress.R:6:5') - Changing language has no effect when envvar LC_ALL='C'
  
  20. Recognize compressed file types ('test_compress.R:7:5') - Changing language has no effect when envvar LC_ALL='C'
  
  21. Recognize compressed file types ('test_compress.R:8:5') - Changing language has no effect when envvar LC_ALL='C'
  
  22. Recognize compressed file types ('test_compress.R:9:5') - Changing language has no effect when envvar LC_ALL='C'
  
  23. (code run outside of `test_that()`) ('test_compress.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  24. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  25. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  26. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  27. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  28. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  29. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  30. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  31. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  32. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  33. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  34. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  35. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  36. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  37. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  38. Export to compressed (zip, tar) / import ('test_compress.R:24:17') - Changing language has no effect when envvar LC_ALL='C'
  
  39. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  40. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  41. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  42. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  43. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  44. Export to compressed (zip, tar) / import ('test_compress.R:24:17') - Changing language has no effect when envvar LC_ALL='C'
  
  45. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  46. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  47. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  48. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  49. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  50. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  51. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  52. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  53. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  54. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  55. Export to compressed (zip, tar) / import ('test_compress.R:27:17') - Changing language has no effect when envvar LC_ALL='C'
  
  56. (code run outside of `test_that()`) ('test_compress.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  57. Multi-item zip ('test_compress.R:40:13') - Changing language has no effect when envvar LC_ALL='C'
  
  58. Multi-item zip ('test_compress.R:43:13') - Changing language has no effect when envvar LC_ALL='C'
  
  59. Multi-item zip ('test_compress.R:44:13') - Changing language has no effect when envvar LC_ALL='C'
  
  60. (code run outside of `test_that()`) ('test_compress.R:33:1') - Changing language has no effect when envvar LC_ALL='C'
  
  61. (code run outside of `test_that()`) ('test_compress.R:49:1') - Changing language has no effect when envvar LC_ALL='C'
  
  62. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  63. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  64. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  65. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  66. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  67. (code run outside of `test_that()`) ('test_compress.R:66:1') - Changing language has no effect when envvar LC_ALL='C'
  
  68. (code run outside of `test_that()`) ('test_compress.R:89:1') - Changing language has no effect when envvar LC_ALL='C'
  
  69. (code run outside of `test_that()`) ('test_compress.R:100:1') - Changing language has no effect when envvar LC_ALL='C'
  
  70. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  71. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  72. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  73. (code run outside of `test_that()`) ('test_compress.R:107:1') - Changing language has no effect when envvar LC_ALL='C'
  
  74. Relative path #438 ('test_compress.R:137:9') - Changing language has no effect when envvar LC_ALL='C'
  
  75. (code run outside of `test_that()`) ('test_compress.R:128:1') - Changing language has no effect when envvar LC_ALL='C'
  
  76. (code run outside of `test_that()`) ('test_compress.R:141:1') - Changing language has no effect when envvar LC_ALL='C'
  
  77. (code run outside of `test_that()`) ('test_convert.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  78. File conversion with arguments ('test_convert.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  79. File conversion with arguments ('test_convert.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  80. File conversion with arguments ('test_convert.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  81. (code run outside of `test_that()`) ('test_convert.R:14:1') - Changing language has no effect when envvar LC_ALL='C'
  
  82. (code run outside of `test_that()`) ('test_convert.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  83. (code run outside of `test_that()`) ('test_create_outfiles.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  84. (code run outside of `test_that()`) ('test_create_outfiles.R:17:1') - Changing language has no effect when envvar LC_ALL='C'
  
  85. (code run outside of `test_that()`) ('test_errors.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  86. (code run outside of `test_that()`) ('test_errors.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  87. (code run outside of `test_that()`) ('test_errors.R:19:1') - Changing language has no effect when envvar LC_ALL='C'
  
  88. (code run outside of `test_that()`) ('test_errors.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  89. Column widths printed for fixed-width format ('test_errors.R:34:9') - Changing language has no effect when envvar LC_ALL='C'
  
  90. (code run outside of `test_that()`) ('test_errors.R:32:1') - Changing language has no effect when envvar LC_ALL='C'
  
  91. (code run outside of `test_that()`) ('test_errors.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  92. export to nonexisting directory #347 ('test_export_corner_cases.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  93. export to nonexisting directory #347 ('test_export_corner_cases.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  94. (code run outside of `test_that()`) ('test_export_corner_cases.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  95. export to existing directory (contra previous one) #347 ('test_export_corner_cases.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  96. export to existing directory (contra previous one) #347 ('test_export_corner_cases.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  97. (code run outside of `test_that()`) ('test_export_corner_cases.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  98. export to nonexisting directory also for compressed file  #347 ('test_export_corner_cases.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  99. export to nonexisting directory also for compressed file  #347 ('test_export_corner_cases.R:25:9') - Changing language has no effect when envvar LC_ALL='C'
  
  100. (code run outside of `test_that()`) ('test_export_corner_cases.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  101. export_list() works ('test_export_list.R:10:9') - Import failed for 1 from mtcars.xlsx
  
  102. export_list() works ('test_export_list.R:10:9') - Import failed for 2 from mtcars.xlsx
  
  103. export_list() works ('test_export_list.R:10:9') - Import failed for 3 from mtcars.xlsx
  
  104. export_list() works ('test_export_list.R:15:9') - Export failed for element 1, filename: mtcars_3.csv
  
  105. export_list() works ('test_export_list.R:15:9') - Export failed for element 2, filename: mtcars_2.csv
  
  106. export_list() works ('test_export_list.R:15:9') - Export failed for element 3, filename: mtcars_1.csv
  
  107. export_list() works ('test_export_list.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  108. export_list() works ('test_export_list.R:16:9') - Export failed for element 1, filename: mtcars3.csv
  
  109. export_list() works ('test_export_list.R:16:9') - Export failed for element 2, filename: mtcars2.csv
  
  110. export_list() works ('test_export_list.R:16:9') - Export failed for element 3, filename: mtcars1.csv
  
  111. export_list() works ('test_export_list.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  112. export_list() works ('test_export_list.R:18:9') - Export failed for element 1, filename: file_1.csv
  
  113. export_list() works ('test_export_list.R:18:9') - Export failed for element 2, filename: file_2.csv
  
  114. export_list() works ('test_export_list.R:18:9') - Export failed for element 3, filename: file_3.csv
  
  115. export_list() works ('test_export_list.R:18:9') - path[1]="file_1.csv": No such file or directory
  
  116. export_list() works ('test_export_list.R:18:9') - path[2]="file_2.csv": No such file or directory
  
  117. export_list() works ('test_export_list.R:18:9') - path[3]="file_3.csv": No such file or directory
  
  118. (code run outside of `test_that()`) ('test_export_list.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  119. archive formats, #415 ('test_export_list.R:46:9') - invalid uid value replaced by that for user 'nobody'
  
  120. archive formats, #415 ('test_export_list.R:47:9') - invalid uid value replaced by that for user 'nobody'
  
  121. archive formats, #415 ('test_export_list.R:48:9') - invalid uid value replaced by that for user 'nobody'
  
  122. (code run outside of `test_that()`) ('test_export_list.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  123. List length of one, #385 ('test_export_list.R:62:9') - Changing language has no effect when envvar LC_ALL='C'
  
  124. (code run outside of `test_that()`) ('test_export_list.R:52:1') - Changing language has no effect when envvar LC_ALL='C'
  
  125. (code run outside of `test_that()`) ('test_export_list.R:66:1') - Changing language has no effect when envvar LC_ALL='C'
  
  126. Export / Import to .R dump file ('test_format_R.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  127. Export / Import to .R dump file ('test_format_R.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  128. Export / Import to .R dump file ('test_format_R.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  129. Export / Import to .R dump file ('test_format_R.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  130. (code run outside of `test_that()`) ('test_format_R.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  131. Weka (.arff) imports/exports ('test_format_arff.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  132. Weka (.arff) imports/exports ('test_format_arff.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  133. (code run outside of `test_that()`) ('test_format_arff.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  134. Export to CSV ('test_format_csv.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  135. (code run outside of `test_that()`) ('test_format_csv.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  136. Export (Append) to CSV ('test_format_csv.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  137. Export (Append) to CSV ('test_format_csv.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  138. (code run outside of `test_that()`) ('test_format_csv.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  139. (code run outside of `test_that()`) ('test_format_csv.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  140. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:29:9') - Changing language has no effect when envvar LC_ALL='C'
  
  141. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:31:9') - Changing language has no effect when envvar LC_ALL='C'
  
  142. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:34:9') - Changing language has no effect when envvar LC_ALL='C'
  
  143. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  144. (code run outside of `test_that()`) ('test_format_csv.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  145. Export to and Import from CSV2 ('test_format_csv.R:42:9') - Changing language has no effect when envvar LC_ALL='C'
  
  146. Export to and Import from CSV2 ('test_format_csv.R:43:9') - Changing language has no effect when envvar LC_ALL='C'
  
  147. (code run outside of `test_that()`) ('test_format_csv.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  148. Export to and Import from TSV with CSV extension ('test_format_csv.R:50:9') - Changing language has no effect when envvar LC_ALL='C'
  
  149. Export to and Import from TSV with CSV extension ('test_format_csv.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  150. Export to and Import from TSV with CSV extension ('test_format_csv.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  151. Export to and Import from TSV with CSV extension ('test_format_csv.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  152. Export to and Import from TSV with CSV extension ('test_format_csv.R:54:9') - Changing language has no effect when envvar LC_ALL='C'
  
  153. Export to and Import from TSV with CSV extension ('test_format_csv.R:55:9') - Changing language has no effect when envvar LC_ALL='C'
  
  154. Export to and Import from TSV with CSV extension ('test_format_csv.R:56:9') - Changing language has no effect when envvar LC_ALL='C'
  
  155. (code run outside of `test_that()`) ('test_format_csv.R:47:1') - Changing language has no effect when envvar LC_ALL='C'
  
  156. (code run outside of `test_that()`) ('test_format_csv.R:60:1') - Changing language has no effect when envvar LC_ALL='C'
  
  157. (code run outside of `test_that()`) ('test_format_csv.R:68:1') - Changing language has no effect when envvar LC_ALL='C'
  
  158. Export to and import from CSVY ('test_format_csvy.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  159. Export to and import from CSVY ('test_format_csvy.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  160. (code run outside of `test_that()`) ('test_format_csvy.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  161. Export to and import from XBASE (.dbf) ('test_format_dbf.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  162. Export to and import from XBASE (.dbf) ('test_format_dbf.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  163. Export to and import from XBASE (.dbf) ('test_format_dbf.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  164. (code run outside of `test_that()`) ('test_format_dbf.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  165. Import from DIF ('test_format_dif.R:3:5') - Changing language has no effect when envvar LC_ALL='C'
  
  166. (code run outside of `test_that()`) ('test_format_dif.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  167. (code run outside of `test_that()`) ('test_format_dta.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  168. (code run outside of `test_that()`) ('test_format_dta.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  169. (code run outside of `test_that()`) ('test_format_dta.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  170. (code run outside of `test_that()`) ('test_format_dta.R:34:1') - Changing language has no effect when envvar LC_ALL='C'
  
  171. Import from EViews ('test_format_eviews.R:3:5') - Changing language has no effect when envvar LC_ALL='C'
  
  172. (code run outside of `test_that()`) ('test_format_eviews.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  173. (code run outside of `test_that()`) ('test_format_external_packages.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  174. (code run outside of `test_that()`) ('test_format_external_packages.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  175. Export to and import from feather ('test_format_feather.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  176. Export to and import from feather ('test_format_feather.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  177. (code run outside of `test_that()`) ('test_format_feather.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  178. Import from Fortran ('test_format_fortran.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  179. (code run outside of `test_that()`) ('test_format_fortran.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  180. Export to and import from fst ('test_format_fst.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  181. Export to and import from fst ('test_format_fst.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  182. (code run outside of `test_that()`) ('test_format_fst.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  183. Export to and import from FWF .fwf ('test_format_fwf.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  184. (code run outside of `test_that()`) ('test_format_fwf.R:5:1') - Changing language has no effect when envvar LC_ALL='C'
  
  185. Export to and import from FWF .txt ('test_format_fwf.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  186. (code run outside of `test_that()`) ('test_format_fwf.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  187. (code run outside of `test_that()`) ('test_format_fwf.R:28:1') - Changing language has no effect when envvar LC_ALL='C'
  
  188. Export to and import from HTML ('test_format_html.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  189. Export to and import from HTML ('test_format_html.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  190. (code run outside of `test_that()`) ('test_format_html.R:15:1') - Changing language has no effect when envvar LC_ALL='C'
  
  191. Export to HTML with ampersands ('test_format_html.R:30:9') - Changing language has no effect when envvar LC_ALL='C'
  
  192. (code run outside of `test_that()`) ('test_format_html.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  193. Import from HTML ('test_format_html.R:37:5') - Changing language has no effect when envvar LC_ALL='C'
  
  194. Import from HTML ('test_format_html.R:38:5') - Changing language has no effect when envvar LC_ALL='C'
  
  195. (code run outside of `test_that()`) ('test_format_html.R:35:1') - Changing language has no effect when envvar LC_ALL='C'
  
  196. Import from HTML with multiple tbody elements ('test_format_html.R:42:5') - Changing language has no effect when envvar LC_ALL='C'
  
  197. Import from HTML with multiple tbody elements ('test_format_html.R:43:5') - Changing language has no effect when envvar LC_ALL='C'
  
  198. Import from HTML with multiple tbody elements ('test_format_html.R:44:5') - Changing language has no effect when envvar LC_ALL='C'
  
  199. Import from HTML with multiple tbody elements ('test_format_html.R:45:5') - Changing language has no effect when envvar LC_ALL='C'
  
  200. (code run outside of `test_that()`) ('test_format_html.R:41:1') - Changing language has no effect when envvar LC_ALL='C'
  
  201. (code run outside of `test_that()`) ('test_format_html.R:48:1') - Changing language has no effect when envvar LC_ALL='C'
  
  202. Export to and import from JSON ('test_format_json.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  203. Export to and import from JSON ('test_format_json.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  204. (code run outside of `test_that()`) ('test_format_json.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  205. Export to JSON (non-data frame) ('test_format_json.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  206. Export to JSON (non-data frame) ('test_format_json.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  207. Export to JSON (non-data frame) ('test_format_json.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  208. Export to JSON (non-data frame) ('test_format_json.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  209. (code run outside of `test_that()`) ('test_format_json.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  210. (code run outside of `test_that()`) ('test_format_json.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  211. (code run outside of `test_that()`) ('test_format_matlab.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  212. Export to and import from parquet ('test_format_parquet.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  213. Export to and import from parquet ('test_format_parquet.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  214. (code run outside of `test_that()`) ('test_format_parquet.R:4:1') - Changing language has no effect when envvar LC_ALL='C'
  
  215. Export to and import from PSV ('test_format_psv.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  216. Export to and import from PSV ('test_format_psv.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  217. (code run outside of `test_that()`) ('test_format_psv.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  218. (code run outside of `test_that()`) ('test_format_psv.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  219. Export to and import from pzfx ('test_format_pzfx.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  220. Export to and import from pzfx ('test_format_pzfx.R:10:9') - Changing language has no effect when envvar LC_ALL='C'
  
  221. Export to and import from pzfx ('test_format_pzfx.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  222. Export to and import from pzfx ('test_format_pzfx.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  223. Export to and import from pzfx ('test_format_pzfx.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  224. (code run outside of `test_that()`) ('test_format_pzfx.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  225. Export to and import from qs2 ('test_format_qs2.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  226. Export to and import from qs2 ('test_format_qs2.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  227. (code run outside of `test_that()`) ('test_format_qs2.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  228. Export to and import from Rdata ('test_format_rdata.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  229. Export to and import from Rdata ('test_format_rdata.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  230. Export to and import from Rdata ('test_format_rdata.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  231. Export to and import from Rdata ('test_format_rdata.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  232. Export to and import from Rdata ('test_format_rdata.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  233. Export to and import from Rdata ('test_format_rdata.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  234. Export to and import from Rdata ('test_format_rdata.R:21:9') - Changing language has no effect when envvar LC_ALL='C'
  
  235. Export to and import from Rdata ('test_format_rdata.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  236. Export to and import from Rdata ('test_format_rdata.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  237. (code run outside of `test_that()`) ('test_format_rdata.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  238. Export to and import from rda ('test_format_rdata.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  239. Export to and import from rda ('test_format_rdata.R:36:9') - Changing language has no effect when envvar LC_ALL='C'
  
  240. Export to and import from rda ('test_format_rdata.R:37:9') - Changing language has no effect when envvar LC_ALL='C'
  
  241. Export to and import from rda ('test_format_rdata.R:44:9') - Changing language has no effect when envvar LC_ALL='C'
  
  242. Export to and import from rda ('test_format_rdata.R:45:9') - Changing language has no effect when envvar LC_ALL='C'
  
  243. Export to and import from rda ('test_format_rdata.R:46:9') - Changing language has no effect when envvar LC_ALL='C'
  
  244. Export to and import from rda ('test_format_rdata.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  245. Export to and import from rda ('test_format_rdata.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  246. Export to and import from rda ('test_format_rdata.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  247. (code run outside of `test_that()`) ('test_format_rdata.R:31:1') - Changing language has no effect when envvar LC_ALL='C'
  
  248. Export to and import from rds ('test_format_rds.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  249. Export to and import from rds ('test_format_rds.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  250. (code run outside of `test_that()`) ('test_format_rds.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  251. Export to rds (non-data frame) ('test_format_rds.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  252. Export to rds (non-data frame) ('test_format_rds.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  253. Export to rds (non-data frame) ('test_format_rds.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  254. (code run outside of `test_that()`) ('test_format_rds.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  255. (code run outside of `test_that()`) ('test_format_sas.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  256. (code run outside of `test_that()`) ('test_format_sas.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  257. (code run outside of `test_that()`) ('test_format_sav.R:2:1') - Changing language has no effect when envvar LC_ALL='C'
  
  258. (code run outside of `test_that()`) ('test_format_sav.R:36:1') - Changing language has no effect when envvar LC_ALL='C'
  
  259. Import from Systat ('test_format_syd.R:4:5') - Changing language has no effect when envvar LC_ALL='C'
  
  260. (code run outside of `test_that()`) ('test_format_syd.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  261. Export to and import from TSV ('test_format_tsv.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  262. Export to and import from TSV ('test_format_tsv.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  263. (code run outside of `test_that()`) ('test_format_tsv.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  264. (code run outside of `test_that()`) ('test_format_tsv.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  265. Export to Excel (.xlsx) ('test_format_xls.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  266. (code run outside of `test_that()`) ('test_format_xls.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  267. (code run outside of `test_that()`) ('test_format_xls.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  268. (code run outside of `test_that()`) ('test_format_xls.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  269. (code run outside of `test_that()`) ('test_format_xls.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  270. (code run outside of `test_that()`) ('test_format_xls.R:47:1') - Changing language has no effect when envvar LC_ALL='C'
  
  271. (code run outside of `test_that()`) ('test_format_xls.R:53:1') - Changing language has no effect when envvar LC_ALL='C'
  
  272. (code run outside of `test_that()`) ('test_format_xls.R:74:1') - Changing language has no effect when envvar LC_ALL='C'
  
  273. Export to and import from XML ('test_format_xml.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  274. Export to and import from XML ('test_format_xml.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  275. (code run outside of `test_that()`) ('test_format_xml.R:15:1') - Changing language has no effect when envvar LC_ALL='C'
  
  276. (code run outside of `test_that()`) ('test_format_xml.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  277. Export to and import from YAML ('test_format_yml.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  278. Export to and import from YAML ('test_format_yml.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  279. (code run outside of `test_that()`) ('test_format_yml.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  280. (code run outside of `test_that()`) ('test_format_yml.R:13:1') - Changing language has no effect when envvar LC_ALL='C'
  
  281. (code run outside of `test_that()`) ('test_guess.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  282. (code run outside of `test_that()`) ('test_guess.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  283. Export without file specified ('test_guess.R:24:9') - Changing language has no effect when envvar LC_ALL='C'
  
  284. (code run outside of `test_that()`) ('test_guess.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  285. (code run outside of `test_that()`) ('test_guess.R:28:1') - Changing language has no effect when envvar LC_ALL='C'
  
  286. (code run outside of `test_that()`) ('test_identical.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  287. (code run outside of `test_that()`) ('test_identical.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  288. (code run outside of `test_that()`) ('test_identical.R:18:1') - Changing language has no effect when envvar LC_ALL='C'
  
  289. (code run outside of `test_that()`) ('test_identical.R:25:1') - Changing language has no effect when envvar LC_ALL='C'
  
  290. (code run outside of `test_that()`) ('test_identical.R:32:1') - Changing language has no effect when envvar LC_ALL='C'
  
  291. (code run outside of `test_that()`) ('test_identical.R:38:1') - Changing language has no effect when envvar LC_ALL='C'
  
  292. Data identical (optional arguments) ('test_identical.R:54:9') - Changing language has no effect when envvar LC_ALL='C'
  
  293. (code run outside of `test_that()`) ('test_identical.R:49:1') - Changing language has no effect when envvar LC_ALL='C'
  
  294. Data identical (import_list) ('test_import_list.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  295. Data identical (import_list) ('test_import_list.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  296. Data identical (import_list) ('test_import_list.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  297. (code run outside of `test_that()`) ('test_import_list.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  298. Import multi-object .Rdata in import_list() ('test_import_list.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  299. Import multi-object .Rdata in import_list() ('test_import_list.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  300. (code run outside of `test_that()`) ('test_import_list.R:13:1') - Changing language has no effect when envvar LC_ALL='C'
  
  301. Import multiple HTML tables in import_list() ('test_import_list.R:24:5') - Changing language has no effect when envvar LC_ALL='C'
  
  302. Import multiple HTML tables in import_list() ('test_import_list.R:25:5') - Changing language has no effect when envvar LC_ALL='C'
  
  303. Import multiple HTML tables in import_list() ('test_import_list.R:26:5') - Changing language has no effect when envvar LC_ALL='C'
  
  304. Import multiple HTML tables in import_list() ('test_import_list.R:27:5') - Changing language has no effect when envvar LC_ALL='C'
  
  305. (code run outside of `test_that()`) ('test_import_list.R:22:1') - Changing language has no effect when envvar LC_ALL='C'
  
  306. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  307. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:36:9') - Changing language has no effect when envvar LC_ALL='C'
  
  308. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:37:9') - Changing language has no effect when envvar LC_ALL='C'
  
  309. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:38:9') - Changing language has no effect when envvar LC_ALL='C'
  
  310. (code run outside of `test_that()`) ('test_import_list.R:30:1') - Changing language has no effect when envvar LC_ALL='C'
  
  311. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Import failed for 1 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  312. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Import failed for 2 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  313. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Changing language has no effect when envvar LC_ALL='C'
  
  314. import_list() preserves 'which' names when specified ('test_import_list.R:46:9') - Import failed for 1 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  315. import_list() preserves 'which' names when specified ('test_import_list.R:46:9') - Changing language has no effect when envvar LC_ALL='C'
  
  316. import_list() preserves 'which' names when specified ('test_import_list.R:47:9') - Import failed for a from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  317. import_list() preserves 'which' names when specified ('test_import_list.R:47:9') - Changing language has no effect when envvar LC_ALL='C'
  
  318. import_list() preserves 'which' names when specified ('test_import_list.R:48:9') - Import failed for 2 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  319. import_list() preserves 'which' names when specified ('test_import_list.R:48:9') - Changing language has no effect when envvar LC_ALL='C'
  
  320. import_list() preserves 'which' names when specified ('test_import_list.R:49:9') - Import failed for b from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  321. import_list() preserves 'which' names when specified ('test_import_list.R:49:9') - Changing language has no effect when envvar LC_ALL='C'
  
  322. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Import failed for 1 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  323. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Import failed for 2 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  324. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Changing language has no effect when envvar LC_ALL='C'
  
  325. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Import failed for 2 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  326. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Import failed for 1 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  327. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  328. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Import failed for a from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  329. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Import failed for b from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  330. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  331. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Import failed for b from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  332. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Import failed for a from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
  
  333. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  334. (code run outside of `test_that()`) ('test_import_list.R:42:1') - Changing language has no effect when envvar LC_ALL='C'
  
  335. (code run outside of `test_that()`) ('test_import_list.R:57:1') - Changing language has no effect when envvar LC_ALL='C'
  
  336. Import single file via import_list() ('test_import_list.R:77:9') - Changing language has no effect when envvar LC_ALL='C'
  
  337. (code run outside of `test_that()`) ('test_import_list.R:74:1') - Changing language has no effect when envvar LC_ALL='C'
  
  338. Import single file from zip via import_list() ('test_import_list.R:84:9') - Changing language has no effect when envvar LC_ALL='C'
  
  339. Import single file from zip via import_list() ('test_import_list.R:85:9') - Changing language has no effect when envvar LC_ALL='C'
  
  340. Import single file from zip via import_list() ('test_import_list.R:87:9') - Changing language has no effect when envvar LC_ALL='C'
  
  341. (code run outside of `test_that()`) ('test_import_list.R:81:1') - Changing language has no effect when envvar LC_ALL='C'
  
  342. Import multiple files from zip via import_list() ('test_import_list.R:96:9') - Changing language has no effect when envvar LC_ALL='C'
  
  343. Import multiple files from zip via import_list() ('test_import_list.R:98:9') - Changing language has no effect when envvar LC_ALL='C'
  
  344. Import multiple files from zip via import_list() ('test_import_list.R:99:9') - Changing language has no effect when envvar LC_ALL='C'
  
  345. Import multiple files from zip via import_list() ('test_import_list.R:100:9') - Changing language has no effect when envvar LC_ALL='C'
  
  346. (code run outside of `test_that()`) ('test_import_list.R:91:1') - Changing language has no effect when envvar LC_ALL='C'
  
  347. Import multiple files from zip via import_list() ('test_import_list.R:108:9') - invalid uid value replaced by that for user 'nobody'
  
  348. Import multiple files from zip via import_list() ('test_import_list.R:110:9') - Changing language has no effect when envvar LC_ALL='C'
  
  349. Import multiple files from zip via import_list() ('test_import_list.R:112:9') - Changing language has no effect when envvar LC_ALL='C'
  
  350. Import multiple files from zip via import_list() ('test_import_list.R:113:9') - Changing language has no effect when envvar LC_ALL='C'
  
  351. Import multiple files from zip via import_list() ('test_import_list.R:114:9') - Changing language has no effect when envvar LC_ALL='C'
  
  352. (code run outside of `test_that()`) ('test_import_list.R:104:1') - Changing language has no effect when envvar LC_ALL='C'
  
  353. Using setclass in import_list() ('test_import_list.R:122:9') - Changing language has no effect when envvar LC_ALL='C'
  
  354. Using setclass in import_list() ('test_import_list.R:123:9') - Import failed for /tmp/th798/26735458/RtmpRNjo6Y/file302b691ee9da9.rds
  
  355. Using setclass in import_list() ('test_import_list.R:123:9') - Import failed for /tmp/th798/26735458/RtmpRNjo6Y/file302b691ee9da9.rds
  
  356. (code run outside of `test_that()`) ('test_import_list.R:118:1') - Changing language has no effect when envvar LC_ALL='C'
  
  357. (code run outside of `test_that()`) ('test_import_list.R:128:1') - Changing language has no effect when envvar LC_ALL='C'
  
  358. (code run outside of `test_that()`) ('test_import_list.R:154:1') - Changing language has no effect when envvar LC_ALL='C'
  
  359. (code run outside of `test_that()`) ('test_import_list.R:166:1') - Changing language has no effect when envvar LC_ALL='C'
  
  360. (code run outside of `test_that()`) ('test_import_list.R:183:1') - Changing language has no effect when envvar LC_ALL='C'
  
  361. (code run outside of `test_that()`) ('test_import_list.R:195:1') - Changing language has no effect when envvar LC_ALL='C'
  
  362. Informative message when files are not found #389 ('test_import_list.R:214:9') - Changing language has no effect when envvar LC_ALL='C'
  
  363. Informative message when files are not found #389 ('test_import_list.R:215:9') - Changing language has no effect when envvar LC_ALL='C'
  
  364. (code run outside of `test_that()`) ('test_import_list.R:211:1') - Changing language has no effect when envvar LC_ALL='C'
  
  365. Missing files and rbind ('test_import_list.R:223:9') - Changing language has no effect when envvar LC_ALL='C'
  
  366. Missing files and rbind ('test_import_list.R:224:9') - Changing language has no effect when envvar LC_ALL='C'
  
  367. Missing files and rbind ('test_import_list.R:225:9') - Changing language has no effect when envvar LC_ALL='C'
  
  368. Missing files and rbind ('test_import_list.R:227:9') - Changing language has no effect when envvar LC_ALL='C'
  
  369. (code run outside of `test_that()`) ('test_import_list.R:220:1') - Changing language has no effect when envvar LC_ALL='C'
  
  370. (code run outside of `test_that()`) ('test_mapping.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  371. (code run outside of `test_that()`) ('test_mapping.R:16:1') - Changing language has no effect when envvar LC_ALL='C'
  
  372. (code run outside of `test_that()`) ('test_mapping.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  373. Export matrix to and import from CSV ('test_matrix.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  374. Export matrix to and import from CSV ('test_matrix.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  375. Export matrix to and import from CSV ('test_matrix.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  376. (code run outside of `test_that()`) ('test_matrix.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  377. (code run outside of `test_that()`) ('test_suggestions.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  378. (code run outside of `test_that()`) ('test_suggestions.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  379. (code run outside of `test_that()`) ('test_suggestions.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  380. (code run outside of `test_that()`) ('test_trust.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  381. (code run outside of `test_that()`) ('test_trust.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  382. (code run outside of `test_that()`) ('test_trust.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  383. (code run outside of `test_that()`) ('test_trust.R:31:1') - Changing language has no effect when envvar LC_ALL='C'
  
  384. (code run outside of `test_that()`) ('test_trust.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  385. (code run outside of `test_that()`) ('test_trust.R:55:1') - Changing language has no effect when envvar LC_ALL='C'
  
  386. (code run outside of `test_that()`) ('test_trust.R:63:1') - Changing language has no effect when envvar LC_ALL='C'
  
  387. (code run outside of `test_that()`) ('test_trust.R:73:1') - Changing language has no effect when envvar LC_ALL='C'
  
  == Failed ======================================================================
  -- 1. Error ('test_compress.R:53:13'): Export to compressed (gz, bz2) / import -
  Error in `regexpr(as.character(pattern), text, ignore.case, perl, fixed, 
      useBytes)`: NA in coercion to boolean
  Backtrace:
       x
    1. \-withr::with_tempfile(...) at test_compress.R:52:9
    2.   \-base::eval(substitute(code), envir = env)
    3.     \-base::eval(substitute(code), envir = env)
    4.       \-rio::export(iris, iris_path) at test_compress.R:53:13
    5.         \-rio:::compress_out(cfile = cfile, filename = file, type = compress)
    6.           \-rio:::.compress_rutils(filename, cfile, ext = ext)
    7.             +-R.utils::compressFile(...)
    8.             \-R.utils::compressFile.default(...)
    9.               +-R.utils::popTemporaryFile(destnameT)
   10.               \-R.utils::popTemporaryFile.default(destnameT)
   11.                 \-base::regexpr(pattern, "", pathnameT)
  
  -- 2. Failure ('test_compress.R:72:13'): Prevent the reuse of `which` for zip an
  `import(data_path)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path), NA) at test_compress.R:72:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 3. Failure ('test_compress.R:74:13'): Prevent the reuse of `which` for zip an
  `import(data_path, which = raw_file)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path, which = raw_file), NA) at test_compress.R:74:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path, which = raw_file)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 4. Failure ('test_compress.R:72:13'): Prevent the reuse of `which` for zip an
  `import(data_path)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path), NA) at test_compress.R:72:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 5. Failure ('test_compress.R:74:13'): Prevent the reuse of `which` for zip an
  `import(data_path, which = raw_file)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path, which = raw_file), NA) at test_compress.R:74:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path, which = raw_file)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 6. Failure ('test_compress.R:72:13'): Prevent the reuse of `which` for zip an
  `import(data_path)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path), NA) at test_compress.R:72:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 7. Failure ('test_compress.R:74:13'): Prevent the reuse of `which` for zip an
  `import(data_path, which = raw_file)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path, which = raw_file), NA) at test_compress.R:74:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path, which = raw_file)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 8. Failure ('test_compress.R:72:13'): Prevent the reuse of `which` for zip an
  `import(data_path)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path), NA) at test_compress.R:72:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 9. Failure ('test_compress.R:74:13'): Prevent the reuse of `which` for zip an
  `import(data_path, which = raw_file)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path, which = raw_file), NA) at test_compress.R:74:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path, which = raw_file)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
  
  -- 10. Failure ('test_compress.R:72:13'): Prevent the reuse of `which` for zip a
  `import(data_path)` threw an error.
  Message: unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
    /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempfile(...) at test_compress.R:70:9
    2. | \-base::eval(substitute(code), envir = env)
    3. |   \-base::eval(substitute(code), envir = env)
    4. |     +-testthat::expect_error(import(data_path), NA) at test_compress.R:72:13
    5. |     | \-testthat:::quasi_capture(...)
    6. |     |   +-testthat (local) .capture(...)
    7. |     |   | \-base::withCallingHandlers(...)
    8. |     |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. |     \-rio::import(data_path)
   10. |       +-rio:::.import(file = file, which = which, ...)
   11. |       \-rio:::.import.rio_xlsx(file = file, which = which, ...)
   12. |         \-rio:::.remap_tidy_convention(...)
   13. |           \-rio:::.docall(...)
   14. |             +-R.utils::doCall(...)
   15. |             +-R.utils::doCall.default(...)
   16. |             | \-base::do.call(.fcn, args = args, envir = envir)
   17. |             \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = 1, col_names = TRUE)
   18. |               \-readxl:::read_excel_(...)
   19. |                 \-readxl:::set_readxl_names(...)
   20. \-base::loadNamespace(x)
   21.   +-base::namespaceImportFrom(...)
   22.   | \-base::asNamespace(ns)
   23.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   24.     +-base::namespaceImportFrom(...)
   25.     | \-base::asNamespace(ns)
   26.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
   27.       \-base::library.dynam(lib, package, package.lib)
   28.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
    ... and 37 more
  
  
  Maximum number of 10 failures reached, some test results may be missing.
  
  == DONE ========================================================================
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'extension.Rmd' using rmarkdown
--- finished re-building 'extension.Rmd'

--- re-building 'labelled.Rmd' using rmarkdown

Quitting from labelled.Rmd:17-20 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'haven' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
    x
 1. \-base::library(haven)
 2.   \-base::tryCatch(...)
 3.     \-base (local) tryCatchList(expr, classes, parentenv, handlers)
 4.       \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 5.         \-value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'labelled.Rmd' failed with diagnostics:
package or namespace load failed for 'haven' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'labelled.Rmd'

--- re-building 'philosophy.Rmd' using rmarkdown
--- finished re-building 'philosophy.Rmd'

--- re-building 'remap.Rmd' using rmarkdown

Quitting from remap.Rmd:28-32 [map1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. +-rio::import("example.xlsx", which = "mtcars")
  2. | +-rio:::.import(file = file, which = which, ...)
  3. | \-rio:::.import.rio_xlsx(file = file, which = which, ...)
  4. |   \-rio:::.remap_tidy_convention(...)
  5. |     \-rio:::.docall(...)
  6. |       +-R.utils::doCall(...)
  7. |       +-R.utils::doCall.default(...)
  8. |       | \-base::do.call(.fcn, args = args, envir = envir)
  9. |       \-readxl (local) `<fn>`(path = `<S3: rio_xlsx>`, sheet = "mtcars", col_names = TRUE)
 10. |         \-readxl:::read_excel_(...)
 11. |           \-readxl:::set_readxl_names(...)
 12. \-base::loadNamespace(x)
 13.   +-base::namespaceImportFrom(...)
 14.   | \-base::asNamespace(ns)
 15.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 16.     +-base::namespaceImportFrom(...)
 17.     | \-base::asNamespace(ns)
 18.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 19.       \-base::library.dynam(lib, package, package.lib)
 20.         \-base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'remap.Rmd' failed with diagnostics:
unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'remap.Rmd'

--- re-building 'rio.Rmd' using rmarkdown

Quitting from rio.Rmd:68-74 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dyn.load()`:
! unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
---
Backtrace:
     x
  1. +-rio::export(mtcars, "mtcars.dta")
  2. | +-rio:::.export(file = file, x = x, ...)
  3. | \-rio:::.export.rio_dta(file = file, x = x, ...)
  4. |   \-rio:::.docall(haven::write_dta, ..., args = list(data = x, path = file))
  5. |     \-R.utils::doCall(...)
  6. \-base::loadNamespace(x)
  7.   +-base::namespaceImportFrom(...)
  8.   | \-base::asNamespace(ns)
  9.   \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 10.     +-base::namespaceImportFrom(...)
 11.     | \-base::asNamespace(ns)
 12.     \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 13.       +-base::namespaceImportFrom(...)
 14.       | \-base::asNamespace(ns)
 15.       \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
 16.         \-base::library.dynam(lib, package, package.lib)
 17.           \-base::dyn.load(file, DLLpath = DLLpath, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rio.Rmd' failed with diagnostics:
unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so':
  /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar
--- failed re-building 'rio.Rmd'

SUMMARY: processing the following files failed:
  'labelled.Rmd' 'remap.Rmd' 'rio.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs, 1 NOTE
See
  '/tmp/th798/26735458/R-devel/1231/rio.Rcheck/00check.log'
for details.

[1] "2026-01-30 03:47:01 MST"
Warning message:
In install.packages(dt.tar.gz, repos = NULL) :
  installation of package '/scratch/th798/data.table-revdeps/2026-01-30/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz' had non-zero exit status
> system(paste(c("diff -u", Rcheck.list), collapse=" "))
--- R_Under_development_unstable_2026-01-29_r89354/release_1.18.2.1.Rcheck/00check.log	2026-01-30 03:45:37.287936015 -0700
+++ R_Under_development_unstable_2026-01-29_r89354/master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.Rcheck/00check.log	2026-01-30 03:47:01.105156138 -0700
@@ -92,11 +92,11 @@
   characterize()/factorize(): W.WW.WW.WW.WW.W.W
   check_file: ..................W.....W....W.....W....W
   compress: 
-  Compressed files: W.W.W.W.W.W.W  adding: file2fd4653f5c0d8b.csv (deflated 78%)
+  Compressed files: W.W.W.W.W.W.W  adding: file302b694ac9e492.csv (deflated 78%)
   W.W.W.W.WW.W.W.W.WW.W.W.W.W.WW.W.W.W.W.WW.W.W.W.WW.W.W.W.W.W  adding: mtcars1.csv (deflated 48%)
     adding: mtcars2.csv (deflated 50%)
     adding: mtcars3.csv (deflated 47%)
-  W...W.W.W1W  adding: file2fd4653a45ab6e.xlsx (deflated 10%)
+  W...W.W.W1W  adding: file302b693154c179.xlsx (deflated 11%)
   23.W45/usr/bin/gtar: NA: Not found in archive
   /usr/bin/gtar: Exiting with failure status due to previous errors
   .W67/usr/bin/gtar: NA: Not found in archive
@@ -107,7 +107,7 @@
   /usr/bin/gtar: Exiting with failure status due to previous errors
   .Wcd/usr/bin/gtar: NA: Not found in archive
   /usr/bin/gtar: Exiting with failure status due to previous errors
-  .eW........WSW  adding: tmp/th798/26735458/RtmpvfFzwK/file2fd4656143f30.csv (stored 0%)
+  .eW........WSW  adding: tmp/th798/26735458/RtmpRNjo6Y/file302b6999d896e.csv (stored 0%)
   .W.W.W.W  adding: file_1.csv (deflated 48%)
     adding: file_2.csv (deflated 50%)
     adding: file_3.csv (deflated 47%)
@@ -165,7 +165,7 @@
   
   guess: .....W........WW.W..W
   identical: ...W....W.WCWDW....W..W.W
-  import_list: .W.W.W.WW.W.WW.W.W.W.WW.W.W.W.WWWW.WW.WW.WW.WW.WWW.WWW.WWW.WWW.WSWW.W  adding: file2fd46554cc8ad9.csv (deflated 58%)
+  import_list: .W.W.W.WW.W.WW.W.W.W.WW.W.W.W.WWWW.WW.WW.WW.WW.WWW.WWW.WWW.WWW.WSWW.W  adding: file302b697064f587.csv (deflated 58%)
   W.W.W.W  adding: mtcars1.csv (deflated 48%)
     adding: mtcars2.csv (deflated 50%)
     adding: mtcars3.csv (deflated 47%)
@@ -827,49 +827,49 @@
   
   310. (code run outside of `test_that()`) ('test_import_list.R:30:1') - Changing language has no effect when envvar LC_ALL='C'
   
-  311. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Import failed for 1 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  311. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Import failed for 1 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
-  312. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Import failed for 2 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  312. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Import failed for 2 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
   313. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Changing language has no effect when envvar LC_ALL='C'
   
-  314. import_list() preserves 'which' names when specified ('test_import_list.R:46:9') - Import failed for 1 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  314. import_list() preserves 'which' names when specified ('test_import_list.R:46:9') - Import failed for 1 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
   315. import_list() preserves 'which' names when specified ('test_import_list.R:46:9') - Changing language has no effect when envvar LC_ALL='C'
   
-  316. import_list() preserves 'which' names when specified ('test_import_list.R:47:9') - Import failed for a from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  316. import_list() preserves 'which' names when specified ('test_import_list.R:47:9') - Import failed for a from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
   317. import_list() preserves 'which' names when specified ('test_import_list.R:47:9') - Changing language has no effect when envvar LC_ALL='C'
   
-  318. import_list() preserves 'which' names when specified ('test_import_list.R:48:9') - Import failed for 2 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  318. import_list() preserves 'which' names when specified ('test_import_list.R:48:9') - Import failed for 2 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
   319. import_list() preserves 'which' names when specified ('test_import_list.R:48:9') - Changing language has no effect when envvar LC_ALL='C'
   
-  320. import_list() preserves 'which' names when specified ('test_import_list.R:49:9') - Import failed for b from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  320. import_list() preserves 'which' names when specified ('test_import_list.R:49:9') - Import failed for b from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
   321. import_list() preserves 'which' names when specified ('test_import_list.R:49:9') - Changing language has no effect when envvar LC_ALL='C'
   
-  322. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Import failed for 1 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  322. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Import failed for 1 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
-  323. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Import failed for 2 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  323. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Import failed for 2 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
   324. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Changing language has no effect when envvar LC_ALL='C'
   
-  325. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Import failed for 2 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  325. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Import failed for 2 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
-  326. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Import failed for 1 from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  326. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Import failed for 1 from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
   327. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
   
-  328. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Import failed for a from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  328. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Import failed for a from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
-  329. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Import failed for b from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  329. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Import failed for b from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
   330. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
   
-  331. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Import failed for b from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  331. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Import failed for b from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
-  332. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Import failed for a from /tmp/th798/26735458/RtmpvfFzwK/file2fd4654dde426.xlsx
+  332. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Import failed for a from /tmp/th798/26735458/RtmpRNjo6Y/file302b691bbf149.xlsx
   
   333. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
   
@@ -913,9 +913,9 @@
   
   353. Using setclass in import_list() ('test_import_list.R:122:9') - Changing language has no effect when envvar LC_ALL='C'
   
-  354. Using setclass in import_list() ('test_import_list.R:123:9') - Import failed for /tmp/th798/26735458/RtmpvfFzwK/file2fd4655f0aaf4.rds
+  354. Using setclass in import_list() ('test_import_list.R:123:9') - Import failed for /tmp/th798/26735458/RtmpRNjo6Y/file302b691ee9da9.rds
   
-  355. Using setclass in import_list() ('test_import_list.R:123:9') - Import failed for /tmp/th798/26735458/RtmpvfFzwK/file2fd4655f0aaf4.rds
+  355. Using setclass in import_list() ('test_import_list.R:123:9') - Import failed for /tmp/th798/26735458/RtmpRNjo6Y/file302b691ee9da9.rds
   
   356. (code run outside of `test_that()`) ('test_import_list.R:118:1') - Changing language has no effect when envvar LC_ALL='C'
   
> library(data.table, lib.loc=R.home("library"))
Error: package or namespace load failed for 'data.table' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so':
  /projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so: undefined symbol: Rf_GetOption
Execution halted
WARNING: ignoring environment value of R_HOME

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> cargs <- commandArgs(trailingOnly=TRUE)
> if(length(cargs)==0){
+   ## before running interactively, make sure to start emacs/R with
+   ## environment defined in /scratch/...check_one.sh, particularly
+   ## R_LIBS_USER=/tmp/... otherwise we get error when installing
+   ## data.table.
+   base <- "/scratch/th798/data.table-revdeps/*"
+   cargs <- c(
+     Sys.glob(file.path(base,"deps.csv")),
+     "349",
+     Sys.glob(file.path(base, "data.table_release_*tar.gz")),
+     Sys.glob(file.path(base, "data.table_master_*tar.gz"))
+   )
+ }
> names(cargs) <- c("deps.csv", "task.str", "release", "master")
> dput(cargs)
c(deps.csv = "/scratch/th798/data.table-revdeps/2026-01-30/deps.csv", 
task.str = "1231", release = "/scratch/th798/data.table-revdeps/2026-01-30/data.table_release_1.18.2.1.tar.gz", 
master = "/scratch/th798/data.table-revdeps/2026-01-30/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz"
)
> (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers
[1] "/tmp/th798/26735458/R-release/1231"
> if(requireNamespace("R.cache"))R.cache::getCachePath()
Loading required namespace: R.cache
[1] "/tmp/th798/26735458/R-release/1231/R.cache"
> task.id <- as.integer(cargs[["task.str"]])
> deps.df <- read.csv(cargs[["deps.csv"]])
> (rev.dep <- deps.df$Package[task.id])
[1] "rio"
> job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id)
> setwd(task.dir)
> .libPaths()
[1] "/tmp/th798/26735458/R-release/1231/library"
[2] "/projects/genomic-ml/R/R-release/library"  
> options(repos=c(#this should be in ~/.Rprofile too.
+   CRAN="http://cloud.r-project.org"))
> print(Sys.time())
[1] "2026-01-30 03:47:07 MST"
> install.time <- system.time({
+   install.packages(rev.dep, dep=TRUE)
+ })
Installing package into '/tmp/th798/26735458/R-release/1231/library'
(as 'lib' is unspecified)
also installing the dependencies 'minty', 'cpp11', 'stringfish', 'hexView', 'pzfx', 'readODS', 'rmatio', 'nanoparquet', 'qs2'

trying URL 'http://cloud.r-project.org/src/contrib/minty_0.0.6.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/cpp11_0.5.3.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/stringfish_0.18.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/hexView_0.3-4.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/pzfx_0.3.1.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/readODS_2.3.2.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/rmatio_0.19.0.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/nanoparquet_0.4.3.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/qs2_0.1.7.tar.gz'
trying URL 'http://cloud.r-project.org/src/contrib/rio_1.2.4.tar.gz'
* installing *source* package 'cpp11' ...
** this is package 'cpp11' version '0.5.3'
** package 'cpp11' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cpp11)
* installing *source* package 'stringfish' ...
** this is package 'stringfish' version '0.18.0'
** package 'stringfish' successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /home/th798/.conda/envs/emacs1/bin/pkg-config
stringfish configure script
PCRE2 library not detected -- compiling from source

-IPCRE2
$(LIBPCRE2)
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RcppExports.cpp -o RcppExports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c sf_functions.cpp -o sf_functions.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_chartables.c -o PCRE2/pcre2_chartables.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_auto_possess.c -o PCRE2/pcre2_auto_possess.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_compile.c -o PCRE2/pcre2_compile.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_config.c -o PCRE2/pcre2_config.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_context.c -o PCRE2/pcre2_context.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_convert.c -o PCRE2/pcre2_convert.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_dfa_match.c -o PCRE2/pcre2_dfa_match.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_error.c -o PCRE2/pcre2_error.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_extuni.c -o PCRE2/pcre2_extuni.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_find_bracket.c -o PCRE2/pcre2_find_bracket.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_jit_compile.c -o PCRE2/pcre2_jit_compile.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_maketables.c -o PCRE2/pcre2_maketables.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_match.c -o PCRE2/pcre2_match.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_match_data.c -o PCRE2/pcre2_match_data.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_newline.c -o PCRE2/pcre2_newline.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_ord2utf.c -o PCRE2/pcre2_ord2utf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_pattern_info.c -o PCRE2/pcre2_pattern_info.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_script_run.c -o PCRE2/pcre2_script_run.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_serialize.c -o PCRE2/pcre2_serialize.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_string_utils.c -o PCRE2/pcre2_string_utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_study.c -o PCRE2/pcre2_study.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_substitute.c -o PCRE2/pcre2_substitute.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_substring.c -o PCRE2/pcre2_substring.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_tables.c -o PCRE2/pcre2_tables.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_ucd.c -o PCRE2/pcre2_ucd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_valid_utf.c -o PCRE2/pcre2_valid_utf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_xclass.c -o PCRE2/pcre2_xclass.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PCRE2/pcre2_is_bundled.c -o PCRE2/pcre2_is_bundled.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -DPCRE2_BUNDLED -I.  -IPCRE2 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c PCRE2_wrapper/pcre2_wrapper.cpp -o PCRE2_wrapper/pcre2_wrapper.o
ar rcs libSFPCRE2.a PCRE2/pcre2_chartables.o PCRE2/pcre2_auto_possess.o PCRE2/pcre2_compile.o PCRE2/pcre2_config.o PCRE2/pcre2_context.o PCRE2/pcre2_convert.o PCRE2/pcre2_dfa_match.o PCRE2/pcre2_error.o PCRE2/pcre2_extuni.o PCRE2/pcre2_find_bracket.o PCRE2/pcre2_jit_compile.o PCRE2/pcre2_maketables.o PCRE2/pcre2_match.o PCRE2/pcre2_match_data.o PCRE2/pcre2_newline.o PCRE2/pcre2_ord2utf.o PCRE2/pcre2_pattern_info.o PCRE2/pcre2_script_run.o PCRE2/pcre2_serialize.o PCRE2/pcre2_string_utils.o PCRE2/pcre2_study.o PCRE2/pcre2_substitute.o PCRE2/pcre2_substring.o PCRE2/pcre2_tables.o PCRE2/pcre2_ucd.o PCRE2/pcre2_valid_utf.o PCRE2/pcre2_xclass.o PCRE2/pcre2_is_bundled.o PCRE2_wrapper/pcre2_wrapper.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o stringfish.so RcppExports.o sf_functions.o -lpthread -L. -lSFPCRE2
installing to /tmp/th798/26735458/R-release/1231/library/00LOCK-stringfish/00new/stringfish/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stringfish)
* installing *source* package 'hexView' ...
** this is package 'hexView' version '0.3-4'
** package 'hexView' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hexView)
* installing *source* package 'pzfx' ...
** this is package 'pzfx' version '0.3.1'
** package 'pzfx' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pzfx)
* installing *source* package 'rmatio' ...
** this is package 'rmatio' version '0.19.0'
** package 'rmatio' successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /home/th798/.conda/envs/emacs1/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking inttypes.h... yes
checking stdlib.h... yes
checking stdint.h... yes
checking strings.h... yes
checking string.h... yes
checking sys/stat.h... yes
checking sys/types.h... yes
checking unistd.h... 
checking for zlib... yes
checking size of char... 1
checking size of short... 2
checking size of double... 8
checking size of float... 4
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of size_t... 8
checking size of void *... 8
checking for mat_int8_t... int8_t
checking for mat_int16_t... int16_t
checking for mat_int32_t... int32_t
checking for mat_int64_t... int64_t
checking for mat_uint8_t... uint8_t
checking for mat_uint16_t... uint16_t
checking for mat_uint32_t... uint32_t
checking for mat_uint64_t... uint64_t
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/matio/config.h
config.status: src/matio/config.h is unchanged
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/endian.c -o matio/endian.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/inflate.c -o matio/inflate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/mat4.c -o matio/mat4.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/mat5.c -o matio/mat5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/mat.c -o matio/mat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/matvar_cell.c -o matio/matvar_cell.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/matvar_struct.c -o matio/matvar_struct.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matio/read_data.c -o matio/read_data.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rmatio.c -o rmatio.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o rmatio.so matio/endian.o matio/inflate.o matio/mat4.o matio/mat5.o matio/mat.o matio/matvar_cell.o matio/matvar_struct.o matio/read_data.o rmatio.o -L/home/th798/.conda/envs/emacs1/lib -lz
installing to /tmp/th798/26735458/R-release/1231/library/00LOCK-rmatio/00new/rmatio/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rmatio)
* installing *source* package 'nanoparquet' ...
** this is package 'nanoparquet' version '0.4.3'
** package 'nanoparquet' successfully unpacked and MD5 sums checked
** using staged installation
** using 28 processors (unless configured differently in Makeconf).
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c lib/ParquetReader.cpp -o lib/ParquetReader.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RParquetReader.cpp -o RParquetReader.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RParquetAppender.cpp -o RParquetAppender.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RParquetOutFile.cpp -o RParquetOutFile.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c r-utils.cpp -o r-utils.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c rwrapper.cpp -o rwrapper.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c protect.cpp -o protect.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c read2.cpp -o read2.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c write2.cpp -o write2.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c cpp-utils.cpp -o cpp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c read-metadata.cpp -o read-metadata.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c read-pages.cpp -o read-pages.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c arrow-schema.cpp -o arrow-schema.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c base64.cpp -o base64.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c r-base64.cpp -o r-base64.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c snappy.cpp -o snappy.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c encodings.cpp -o encodings.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c dictionary-encoding.cpp -o dictionary-encoding.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c test.cpp -o test.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c lib/ParquetOutFile.cpp -o lib/ParquetOutFile.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c lib/RleBpDecoder.cpp -o lib/RleBpDecoder.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c parquet/parquet_types.cpp -o parquet/parquet_types.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c thrift/protocol/TProtocol.cpp -o thrift/protocol/TProtocol.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c thrift/transport/TTransportException.cpp -o thrift/transport/TTransportException.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c thrift/transport/TBufferTransports.cpp -o thrift/transport/TBufferTransports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c fastpforlib/bitpacking.cpp -o fastpforlib/bitpacking.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c snappy/snappy.cc -o snappy/snappy.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c snappy/snappy-sinksource.cc -o snappy/snappy-sinksource.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c miniz/miniz.cpp -o miniz/miniz.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/common/entropy_common.cpp -o zstd/common/entropy_common.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/common/error_private.cpp -o zstd/common/error_private.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/common/fse_decompress.cpp -o zstd/common/fse_decompress.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/common/xxhash.cpp -o zstd/common/xxhash.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/common/zstd_common.cpp -o zstd/common/zstd_common.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/decompress/huf_decompress.cpp -o zstd/decompress/huf_decompress.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/decompress/zstd_ddict.cpp -o zstd/decompress/zstd_ddict.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/decompress/zstd_decompress.cpp -o zstd/decompress/zstd_decompress.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/decompress/zstd_decompress_block.cpp -o zstd/decompress/zstd_decompress_block.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/fse_compress.cpp -o zstd/compress/fse_compress.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/hist.cpp -o zstd/compress/hist.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/huf_compress.cpp -o zstd/compress/huf_compress.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/zstd_compress.cpp -o zstd/compress/zstd_compress.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/zstd_compress_literals.cpp -o zstd/compress/zstd_compress_literals.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/zstd_compress_sequences.cpp -o zstd/compress/zstd_compress_sequences.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/zstd_compress_superblock.cpp -o zstd/compress/zstd_compress_superblock.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/zstd_double_fast.cpp -o zstd/compress/zstd_double_fast.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/zstd_fast.cpp -o zstd/compress/zstd_fast.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/zstd_lazy.cpp -o zstd/compress/zstd_lazy.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/zstd_ldm.cpp -o zstd/compress/zstd_ldm.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -Ithrift -I. -Izstd/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -DR_NO_REMAP -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c zstd/compress/zstd_opt.cpp -o zstd/compress/zstd_opt.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o nanoparquet.so lib/ParquetReader.o RParquetReader.o RParquetAppender.o RParquetOutFile.o r-utils.o rwrapper.o protect.o read2.o write2.o cpp-utils.o read-metadata.o read-pages.o arrow-schema.o base64.o r-base64.o snappy.o encodings.o dictionary-encoding.o test.o lib/ParquetOutFile.o lib/RleBpDecoder.o parquet/parquet_types.o thrift/protocol/TProtocol.o thrift/transport/TTransportException.o thrift/transport/TBufferTransports.o fastpforlib/bitpacking.o snappy/snappy.o snappy/snappy-sinksource.o miniz/miniz.o zstd/common/entropy_common.o zstd/common/error_private.o zstd/common/fse_decompress.o zstd/common/xxhash.o zstd/common/zstd_common.o zstd/decompress/huf_decompress.o zstd/decompress/zstd_ddict.o zstd/decompress/zstd_decompress.o zstd/decompress/zstd_decompress_block.o zstd/compress/fse_compress.o zstd/compress/hist.o zstd/compress/huf_compress.o zstd/compress/zstd_compress.o zstd/compress/zstd_compress_literals.o zstd/compress/zstd_compress_sequences.o zstd/compress/zstd_compress_superblock.o zstd/compress/zstd_double_fast.o zstd/compress/zstd_fast.o zstd/compress/zstd_lazy.o zstd/compress/zstd_ldm.o zstd/compress/zstd_opt.o
installing via 'install.libs.R' to /tmp/th798/26735458/R-release/1231/library/00LOCK-nanoparquet/00new/nanoparquet
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nanoparquet)
* installing *source* package 'rio' ...
** this is package 'rio' version '1.2.4'
** package 'rio' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rio)
* installing *source* package 'minty' ...
** this is package 'minty' version '0.0.6'
** package 'minty' successfully unpacked and MD5 sums checked
** using staged installation
** libs
Error: package 'tzdb' 0.4.0 was found, but >= 0.5.0 is required by 'minty'
* removing '/tmp/th798/26735458/R-release/1231/library/minty'
* installing *source* package 'qs2' ...
** this is package 'qs2' version '0.1.7'
** package 'qs2' successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /home/th798/.conda/envs/emacs1/bin/pkg-config
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/g++ option to enable C++11 features... none needed
C++ compiler: /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17
zstd 1.5.2 library detected but is lower than bundled version (1.5.2) -- compiling from source
Fixed blocksize
Checking if atomic link works without -latomic
TBB use determined by RcppParallel
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: 'g++ (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -IZSTD -IZSTD/common -IZSTD/decompress -IZSTD/compress   -DIS_UTF8_LOCALE=0 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/tmp/th798/26735458/R-release/1231/library/stringfish/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include     -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c RcppExports.cpp -o RcppExports.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -IZSTD -IZSTD/common -IZSTD/decompress -IZSTD/compress   -DIS_UTF8_LOCALE=0 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/tmp/th798/26735458/R-release/1231/library/stringfish/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include     -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c qx_functions.cpp -o qx_functions.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -IZSTD -IZSTD/common -IZSTD/decompress -IZSTD/compress   -DIS_UTF8_LOCALE=0 -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I'/tmp/th798/26735458/R-release/1231/library/stringfish/include' -I'/projects/genomic-ml/R/R-release/library/RcppParallel/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ZSTD/zstd.c -o ZSTD/zstd.o
ar rcs libQSZSTD.a ZSTD/zstd.o
/packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o qs2.so RcppExports.o qx_functions.o -L. -lQSZSTD
installing to /tmp/th798/26735458/R-release/1231/library/00LOCK-qs2/00new/qs2/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qs2)
ERROR: dependency 'minty' is not available for package 'readODS'
Perhaps try a variation of:
install.packages('minty')
* removing '/tmp/th798/26735458/R-release/1231/library/readODS'

The downloaded source packages are in
	'/tmp/th798/26735458/Rtmpfyc41Y/downloaded_packages'
Warning messages:
1: In install.packages(rev.dep, dep = TRUE) :
  installation of package 'minty' had non-zero exit status
2: In install.packages(rev.dep, dep = TRUE) :
  installation of package 'readODS' had non-zero exit status
> cat("Time to install revdep:\n")
Time to install revdep:
> print(install.time)
   user  system elapsed 
110.755  13.633 128.933 
> print(Sys.time())
[1] "2026-01-30 03:49:16 MST"
> downloaded_packages <- file.path(
+   tempdir(),
+   "downloaded_packages")
> dl.glob <- file.path(
+   downloaded_packages,
+   paste0(rev.dep,"_*.tar.gz"))
> rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob))
> colnames(rev.dep.dl.row) <- c("pkg","path")
> rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE)
> pkg.Rcheck <- paste0(rev.dep, ".Rcheck")
> 
> proj.dir <- "~/genomic-ml/data.table-revdeps"
> source(file.path(proj.dir, "myStatus.R"))
> Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]]))
> dir.create(Rvers, showWarnings=FALSE)
> Rcheck.list <- list()
> for(dt.version.short in c("release", "master")){
+   dt.tar.gz <- cargs[[dt.version.short]]
+   dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz)
+   print(Sys.time())
+   install.packages(dt.tar.gz, repos=NULL)
+   print(Sys.time())
+   check.cmd <- get_check_cmd(rev.dep.release.tar.gz)
+   system(check.cmd)
+   print(Sys.time())
+   dest.Rcheck <- file.path(
+     Rvers,
+     paste0(dt.version, ".Rcheck"))
+   unlink(dest.Rcheck, recursive=TRUE)
+   file.rename(pkg.Rcheck, dest.Rcheck)
+   Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log")
+ }
[1] "2026-01-30 03:49:16 MST"
Installing package into '/tmp/th798/26735458/R-release/1231/library'
(as 'lib' is unspecified)
* installing *source* package 'data.table' ...
** this is package 'data.table' version '1.18.2.1'
** package 'data.table' successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
* checking if R installation supports OpenMP without any extra hints... yes
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c assign.c -o assign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c between.c -o between.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bmerge.c -o bmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chmatch.c -o chmatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cj.c -o cj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coalesce.c -o coalesce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dogroups.c -o dogroups.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastmean.c -o fastmean.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fcast.c -o fcast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fifelse.c -o fifelse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmelt.c -o fmelt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c forder.c -o forder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frank.c -o frank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fread.c -o fread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c freadR.c -o freadR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c froll.c -o froll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollR.c -o frollR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frolladaptive.c -o frolladaptive.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c frollapply.c -o frollapply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsort.c -o fsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwrite.c -o fwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fwriteR.c -o fwriteR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gsumm.c -o gsumm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c hash.c -o hash.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idatetime.c -o idatetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ijoin.c -o ijoin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inrange.c -o inrange.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mergelist.c -o mergelist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nafill.c -o nafill.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c negate.c -o negate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nqrecreateindices.c -o nqrecreateindices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c openmp-utils.c -o openmp-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c programming.c -o programming.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c quickselect.c -o quickselect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbindlist.c -o rbindlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c reorder.c -o reorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shellsort.c -o shellsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c shift.c -o shift.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snprintf.c -o snprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c transpose.c -o transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c types.c -o types.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uniqlist.c -o uniqlist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vecseq.c -o vecseq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden  -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wrappers.c -o wrappers.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o hash.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fvisibility=hidden -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
PKG_CFLAGS = -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include
PKG_LIBS = -fvisibility=hidden -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/th798/26735458/R-release/1231/library/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
[1] "2026-01-30 03:49:44 MST"
* using log directory '/tmp/th798/26735458/R-release/1231/rio.Rcheck'
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'rio/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rio' version '1.2.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: 'readODS'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'rio' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: 'readODS'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  > library("rio")
  > test_check("rio", reporter = "summary")
  characterize: 
  characterize()/factorize(): W.WW.WW.WW.WW.W.W
  check_file: ..................W.....W....W.....W....W
  compress: 
  Compressed files: W.W.W.W.W.W.W  adding: file30e14377f2c4a.csv (deflated 78%)
  W.W.W.W.WW.W.W.W.WW.W.W.W.W.WW.W.W.W.W.WW.W.W.W.WW.W.W.W.W.W  adding: mtcars1.csv (deflated 48%)
    adding: mtcars2.csv (deflated 50%)
    adding: mtcars3.csv (deflated 47%)
  W...W.W.W1W  adding: file30e1435fd2b265.xlsx (deflated 11%)
  ...W../usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W../usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W../usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W../usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W../usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .2W........WSW  adding: tmp/th798/26735458/RtmpTDBwwD/file30e1431867f1b4.csv (stored 0%)
  .W.W.W.W  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  W.W..W
  convert: W.W.WW.W.W.W.W
  create_outfiles: ...W.....W
  errors: .W....W..W.WW..W.W
  export_corner_cases: W..W.WW..W.WW.3W4W
  export_list: ..W.W.  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  W.  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  W.W.W.W.W......W..  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  .W.W.W.W....W.WSW
  extensions: S
  format_R: W.W.W.W.W
  format_arff: W.W.W
  format_csv: W.WW.W.W.WW.W.W.W.WW.W.WW.W.W.W.W.W.W.W..W...W
  format_csvy: W.W.W
  format_dbf: W.W.W.W
  format_dif: W.W
  format_dta: W..WW...WW...W..W
  format_eviews: W.W
  format_external_packages: ...........W....W
  format_feather: W.W.W
  format_fortran: W.W
  format_fst: W.W.W
  format_fwf: W.W.W.W.W...WW.W.W..W
  format_html: W.W.WW.WW.W.WW.W.W.W.W...............W
  format_json: W.W.WW.W.W.W.W.W
  format_matlab: SW
  format_mtp: 
  format_ods: S
  format_parquet: W.W.W
  format_psv: W.W.W..W
  format_pzfx: W.W.W.W.W.W
  format_qs: W.W.W
  format_qs2: W.W.W
  format_rdata: W.W.W.W.W.W.W.W.W..WW.W.W.W.W.W.W.W.W..W
  format_rds: W.W.WW.W.W.W
  format_rec: 
  format_sas: W.W.WW.W
  format_sav: W.W.W.W.W.W.W.W.W.W.W...WW.W.W.W.W.W.W.W.W.W.W.W
  format_syd: W.W
  format_tsv: W.W.W..W
  format_xls: W.W.W.W.W.W.W...W..WW.W.W.WW.W.W...W.W
  format_xml: W.W.W...............W
  format_yml: W.W...W5W
  gather_attrs: W.W.W.W.W.W.W.W.W.W.WW.W.W.W.W.W.WW.W.W.W.W.W.W
  guess: .....W........WW.W..W
  identical: ...W....W.W..W.W....W..W.W
  import_list: .W.W.W.WW.W.WW.W.W.W.WW.W.W.W.WW.W.W.W.W.W.W.W.W.WSWW.W  adding: file30e14334118ae3.csv (deflated 58%)
  W.W.W.W  adding: mtcars1.csv (deflated 48%)
    adding: mtcars2.csv (deflated 50%)
    adding: mtcars3.csv (deflated 47%)
  ..W..W.W.W.WW..W..W.W.W.WW.W.W6W..WSWSWSWW.W..WW.W.W..W..W
  mapping: .........W.W..W
  matrix: W.W.W.W
  remote: S
  set_class: W.W.W.W.W.WW.W.W.WW.W.W.WW.W.W.W.W.W.W.W.W
  suggestions: SWSWSW
  trust: ..W..W..W..W...W..W...W...W
  
  == Skipped =====================================================================
  1. tar export error for R < 4.0.3 ('test_compress.R:101:5') - Reason: getRversion() >= "4.0.3" is TRUE
  
  2. tar export error for R < 4.0.3 ('test_export_list.R:67:5') - Reason: getRversion() >= "4.0.3" is TRUE
  
  3. (code run outside of `test_that()`) ('test_extensions.R:2:1') - Reason: On CRAN
  
  4. Export to and import from matlab ('test_format_matlab.R:4:5') - Reason: failing mysteriously
  
  5. (code run outside of `test_that()`) ('test_format_ods.R:1:1') - Reason: readODS cannot be loaded
  
  6. import_list() preserves 'which' names when specified ods ('test_import_list.R:58:5') - Reason: readODS cannot be loaded
  
  7. URL #294 ('test_import_list.R:167:5') - Reason: On CRAN
  
  8. Universal dummy `which` #326 ('test_import_list.R:184:5') - Reason: readODS cannot be loaded
  
  9. Universal dummy `which` (Suggests) #326 ('test_import_list.R:199:5') - Reason: readODS cannot be loaded
  
  10. (code run outside of `test_that()`) ('test_remote.R:1:1') - Reason: On CRAN
  
  11. uninstalled_formats() ('test_suggestions.R:2:5') - Reason: On CRAN
  
  12. show_unsupported_formats (in the fully supported environment) on CI ('test_suggestions.R:13:5') - Reason: On CRAN
  
  13. show_unsupported_formats (in the partial supported environment) on CI ('test_suggestions.R:22:5') - Reason: On CRAN
  
  == Warnings ====================================================================
  1. test characterize.default() ('test_characterize.R:9:5') - Changing language has no effect when envvar LC_ALL='C'
  
  2. (code run outside of `test_that()`) ('test_characterize.R:8:1') - Changing language has no effect when envvar LC_ALL='C'
  
  3. test characterize.default() ('test_characterize.R:13:5') - Changing language has no effect when envvar LC_ALL='C'
  
  4. (code run outside of `test_that()`) ('test_characterize.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  5. test factorize.data.frame() ('test_characterize.R:17:5') - Changing language has no effect when envvar LC_ALL='C'
  
  6. (code run outside of `test_that()`) ('test_characterize.R:16:1') - Changing language has no effect when envvar LC_ALL='C'
  
  7. test factorize.data.frame() ('test_characterize.R:21:5') - Changing language has no effect when envvar LC_ALL='C'
  
  8. (code run outside of `test_that()`) ('test_characterize.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  9. test factorize coerce_character ('test_characterize.R:25:5') - Changing language has no effect when envvar LC_ALL='C'
  
  10. test factorize coerce_character ('test_characterize.R:26:5') - Changing language has no effect when envvar LC_ALL='C'
  
  11. (code run outside of `test_that()`) ('test_characterize.R:24:1') - Changing language has no effect when envvar LC_ALL='C'
  
  12. (code run outside of `test_that()`) ('test_check_file.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  13. (code run outside of `test_that()`) ('test_check_file.R:27:1') - Changing language has no effect when envvar LC_ALL='C'
  
  14. (code run outside of `test_that()`) ('test_check_file.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  15. (code run outside of `test_that()`) ('test_check_file.R:50:1') - Changing language has no effect when envvar LC_ALL='C'
  
  16. (code run outside of `test_that()`) ('test_check_file.R:62:1') - Changing language has no effect when envvar LC_ALL='C'
  
  17. Recognize compressed file types ('test_compress.R:4:5') - Changing language has no effect when envvar LC_ALL='C'
  
  18. Recognize compressed file types ('test_compress.R:5:5') - Changing language has no effect when envvar LC_ALL='C'
  
  19. Recognize compressed file types ('test_compress.R:6:5') - Changing language has no effect when envvar LC_ALL='C'
  
  20. Recognize compressed file types ('test_compress.R:7:5') - Changing language has no effect when envvar LC_ALL='C'
  
  21. Recognize compressed file types ('test_compress.R:8:5') - Changing language has no effect when envvar LC_ALL='C'
  
  22. Recognize compressed file types ('test_compress.R:9:5') - Changing language has no effect when envvar LC_ALL='C'
  
  23. (code run outside of `test_that()`) ('test_compress.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  24. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  25. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  26. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  27. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  28. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  29. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  30. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  31. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  32. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  33. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  34. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  35. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  36. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  37. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  38. Export to compressed (zip, tar) / import ('test_compress.R:24:17') - Changing language has no effect when envvar LC_ALL='C'
  
  39. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  40. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  41. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  42. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  43. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  44. Export to compressed (zip, tar) / import ('test_compress.R:24:17') - Changing language has no effect when envvar LC_ALL='C'
  
  45. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  46. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  47. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  48. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  49. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  50. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  51. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  52. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  53. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  54. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  55. Export to compressed (zip, tar) / import ('test_compress.R:27:17') - Changing language has no effect when envvar LC_ALL='C'
  
  56. (code run outside of `test_that()`) ('test_compress.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  57. Multi-item zip ('test_compress.R:40:13') - Changing language has no effect when envvar LC_ALL='C'
  
  58. Multi-item zip ('test_compress.R:43:13') - Changing language has no effect when envvar LC_ALL='C'
  
  59. Multi-item zip ('test_compress.R:44:13') - Changing language has no effect when envvar LC_ALL='C'
  
  60. (code run outside of `test_that()`) ('test_compress.R:33:1') - Changing language has no effect when envvar LC_ALL='C'
  
  61. (code run outside of `test_that()`) ('test_compress.R:49:1') - Changing language has no effect when envvar LC_ALL='C'
  
  62. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  63. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  64. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  65. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  66. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  67. (code run outside of `test_that()`) ('test_compress.R:66:1') - Changing language has no effect when envvar LC_ALL='C'
  
  68. (code run outside of `test_that()`) ('test_compress.R:89:1') - Changing language has no effect when envvar LC_ALL='C'
  
  69. (code run outside of `test_that()`) ('test_compress.R:100:1') - Changing language has no effect when envvar LC_ALL='C'
  
  70. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  71. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  72. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  73. (code run outside of `test_that()`) ('test_compress.R:107:1') - Changing language has no effect when envvar LC_ALL='C'
  
  74. Relative path #438 ('test_compress.R:137:9') - Changing language has no effect when envvar LC_ALL='C'
  
  75. (code run outside of `test_that()`) ('test_compress.R:128:1') - Changing language has no effect when envvar LC_ALL='C'
  
  76. (code run outside of `test_that()`) ('test_compress.R:141:1') - Changing language has no effect when envvar LC_ALL='C'
  
  77. Basic file conversion ('test_convert.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  78. Basic file conversion ('test_convert.R:10:9') - Changing language has no effect when envvar LC_ALL='C'
  
  79. (code run outside of `test_that()`) ('test_convert.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  80. File conversion with arguments ('test_convert.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  81. File conversion with arguments ('test_convert.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  82. File conversion with arguments ('test_convert.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  83. (code run outside of `test_that()`) ('test_convert.R:14:1') - Changing language has no effect when envvar LC_ALL='C'
  
  84. (code run outside of `test_that()`) ('test_convert.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  85. (code run outside of `test_that()`) ('test_create_outfiles.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  86. (code run outside of `test_that()`) ('test_create_outfiles.R:17:1') - Changing language has no effect when envvar LC_ALL='C'
  
  87. (code run outside of `test_that()`) ('test_errors.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  88. (code run outside of `test_that()`) ('test_errors.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  89. (code run outside of `test_that()`) ('test_errors.R:19:1') - Changing language has no effect when envvar LC_ALL='C'
  
  90. (code run outside of `test_that()`) ('test_errors.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  91. Column widths printed for fixed-width format ('test_errors.R:34:9') - Changing language has no effect when envvar LC_ALL='C'
  
  92. (code run outside of `test_that()`) ('test_errors.R:32:1') - Changing language has no effect when envvar LC_ALL='C'
  
  93. (code run outside of `test_that()`) ('test_errors.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  94. export to nonexisting directory #347 ('test_export_corner_cases.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  95. export to nonexisting directory #347 ('test_export_corner_cases.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  96. (code run outside of `test_that()`) ('test_export_corner_cases.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  97. export to existing directory (contra previous one) #347 ('test_export_corner_cases.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  98. export to existing directory (contra previous one) #347 ('test_export_corner_cases.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  99. (code run outside of `test_that()`) ('test_export_corner_cases.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  100. export to nonexisting directory also for compressed file  #347 ('test_export_corner_cases.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  101. export to nonexisting directory also for compressed file  #347 ('test_export_corner_cases.R:25:9') - Changing language has no effect when envvar LC_ALL='C'
  
  102. (code run outside of `test_that()`) ('test_export_corner_cases.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  103. export_list() works ('test_export_list.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  104. export_list() works ('test_export_list.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  105. export_list() works ('test_export_list.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  106. export_list() works ('test_export_list.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  107. export_list() works ('test_export_list.R:21:9') - Changing language has no effect when envvar LC_ALL='C'
  
  108. export_list() works ('test_export_list.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  109. export_list() works ('test_export_list.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  110. export_list() works ('test_export_list.R:26:9') - Changing language has no effect when envvar LC_ALL='C'
  
  111. (code run outside of `test_that()`) ('test_export_list.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  112. archive formats, #415 ('test_export_list.R:46:9') - invalid uid value replaced by that for user 'nobody'
  
  113. archive formats, #415 ('test_export_list.R:47:9') - invalid uid value replaced by that for user 'nobody'
  
  114. archive formats, #415 ('test_export_list.R:48:9') - invalid uid value replaced by that for user 'nobody'
  
  115. (code run outside of `test_that()`) ('test_export_list.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  116. List length of one, #385 ('test_export_list.R:62:9') - Changing language has no effect when envvar LC_ALL='C'
  
  117. (code run outside of `test_that()`) ('test_export_list.R:52:1') - Changing language has no effect when envvar LC_ALL='C'
  
  118. (code run outside of `test_that()`) ('test_export_list.R:66:1') - Changing language has no effect when envvar LC_ALL='C'
  
  119. Export / Import to .R dump file ('test_format_R.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  120. Export / Import to .R dump file ('test_format_R.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  121. Export / Import to .R dump file ('test_format_R.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  122. Export / Import to .R dump file ('test_format_R.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  123. (code run outside of `test_that()`) ('test_format_R.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  124. Weka (.arff) imports/exports ('test_format_arff.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  125. Weka (.arff) imports/exports ('test_format_arff.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  126. (code run outside of `test_that()`) ('test_format_arff.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  127. Export to CSV ('test_format_csv.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  128. (code run outside of `test_that()`) ('test_format_csv.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  129. Export (Append) to CSV ('test_format_csv.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  130. Export (Append) to CSV ('test_format_csv.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  131. (code run outside of `test_that()`) ('test_format_csv.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  132. (code run outside of `test_that()`) ('test_format_csv.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  133. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:29:9') - Changing language has no effect when envvar LC_ALL='C'
  
  134. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:31:9') - Changing language has no effect when envvar LC_ALL='C'
  
  135. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:34:9') - Changing language has no effect when envvar LC_ALL='C'
  
  136. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  137. (code run outside of `test_that()`) ('test_format_csv.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  138. Export to and Import from CSV2 ('test_format_csv.R:42:9') - Changing language has no effect when envvar LC_ALL='C'
  
  139. Export to and Import from CSV2 ('test_format_csv.R:43:9') - Changing language has no effect when envvar LC_ALL='C'
  
  140. (code run outside of `test_that()`) ('test_format_csv.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  141. Export to and Import from TSV with CSV extension ('test_format_csv.R:50:9') - Changing language has no effect when envvar LC_ALL='C'
  
  142. Export to and Import from TSV with CSV extension ('test_format_csv.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  143. Export to and Import from TSV with CSV extension ('test_format_csv.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  144. Export to and Import from TSV with CSV extension ('test_format_csv.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  145. Export to and Import from TSV with CSV extension ('test_format_csv.R:54:9') - Changing language has no effect when envvar LC_ALL='C'
  
  146. Export to and Import from TSV with CSV extension ('test_format_csv.R:55:9') - Changing language has no effect when envvar LC_ALL='C'
  
  147. Export to and Import from TSV with CSV extension ('test_format_csv.R:56:9') - Changing language has no effect when envvar LC_ALL='C'
  
  148. (code run outside of `test_that()`) ('test_format_csv.R:47:1') - Changing language has no effect when envvar LC_ALL='C'
  
  149. (code run outside of `test_that()`) ('test_format_csv.R:60:1') - Changing language has no effect when envvar LC_ALL='C'
  
  150. (code run outside of `test_that()`) ('test_format_csv.R:68:1') - Changing language has no effect when envvar LC_ALL='C'
  
  151. Export to and import from CSVY ('test_format_csvy.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  152. Export to and import from CSVY ('test_format_csvy.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  153. (code run outside of `test_that()`) ('test_format_csvy.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  154. Export to and import from XBASE (.dbf) ('test_format_dbf.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  155. Export to and import from XBASE (.dbf) ('test_format_dbf.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  156. Export to and import from XBASE (.dbf) ('test_format_dbf.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  157. (code run outside of `test_that()`) ('test_format_dbf.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  158. Import from DIF ('test_format_dif.R:3:5') - Changing language has no effect when envvar LC_ALL='C'
  
  159. (code run outside of `test_that()`) ('test_format_dif.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  160. Export to Stata ('test_format_dta.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  161. (code run outside of `test_that()`) ('test_format_dta.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  162. Import from Stata (read_dta) ('test_format_dta.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  163. (code run outside of `test_that()`) ('test_format_dta.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  164. Import from Stata with extended Haven features (read_dta) ('test_format_dta.R:25:9') - Changing language has no effect when envvar LC_ALL='C'
  
  165. (code run outside of `test_that()`) ('test_format_dta.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  166. (code run outside of `test_that()`) ('test_format_dta.R:34:1') - Changing language has no effect when envvar LC_ALL='C'
  
  167. Import from EViews ('test_format_eviews.R:3:5') - Changing language has no effect when envvar LC_ALL='C'
  
  168. (code run outside of `test_that()`) ('test_format_eviews.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  169. (code run outside of `test_that()`) ('test_format_external_packages.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  170. (code run outside of `test_that()`) ('test_format_external_packages.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  171. Export to and import from feather ('test_format_feather.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  172. Export to and import from feather ('test_format_feather.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  173. (code run outside of `test_that()`) ('test_format_feather.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  174. Import from Fortran ('test_format_fortran.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  175. (code run outside of `test_that()`) ('test_format_fortran.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  176. Export to and import from fst ('test_format_fst.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  177. Export to and import from fst ('test_format_fst.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  178. (code run outside of `test_that()`) ('test_format_fst.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  179. Export to and import from FWF .fwf ('test_format_fwf.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  180. Export to and import from FWF .fwf ('test_format_fwf.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  181. Export to and import from FWF .fwf ('test_format_fwf.R:10:9') - Changing language has no effect when envvar LC_ALL='C'
  
  182. Export to and import from FWF .fwf ('test_format_fwf.R:11:9') - Changing language has no effect when envvar LC_ALL='C'
  
  183. Export to and import from FWF .fwf ('test_format_fwf.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  184. (code run outside of `test_that()`) ('test_format_fwf.R:5:1') - Changing language has no effect when envvar LC_ALL='C'
  
  185. Export to and import from FWF .txt ('test_format_fwf.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  186. Export to and import from FWF .txt ('test_format_fwf.R:24:9') - Changing language has no effect when envvar LC_ALL='C'
  
  187. (code run outside of `test_that()`) ('test_format_fwf.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  188. (code run outside of `test_that()`) ('test_format_fwf.R:28:1') - Changing language has no effect when envvar LC_ALL='C'
  
  189. Export to and import from HTML ('test_format_html.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  190. Export to and import from HTML ('test_format_html.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  191. (code run outside of `test_that()`) ('test_format_html.R:15:1') - Changing language has no effect when envvar LC_ALL='C'
  
  192. Export to HTML with ampersands ('test_format_html.R:30:9') - Changing language has no effect when envvar LC_ALL='C'
  
  193. (code run outside of `test_that()`) ('test_format_html.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  194. Import from HTML ('test_format_html.R:37:5') - Changing language has no effect when envvar LC_ALL='C'
  
  195. Import from HTML ('test_format_html.R:38:5') - Changing language has no effect when envvar LC_ALL='C'
  
  196. (code run outside of `test_that()`) ('test_format_html.R:35:1') - Changing language has no effect when envvar LC_ALL='C'
  
  197. Import from HTML with multiple tbody elements ('test_format_html.R:42:5') - Changing language has no effect when envvar LC_ALL='C'
  
  198. Import from HTML with multiple tbody elements ('test_format_html.R:43:5') - Changing language has no effect when envvar LC_ALL='C'
  
  199. Import from HTML with multiple tbody elements ('test_format_html.R:44:5') - Changing language has no effect when envvar LC_ALL='C'
  
  200. Import from HTML with multiple tbody elements ('test_format_html.R:45:5') - Changing language has no effect when envvar LC_ALL='C'
  
  201. (code run outside of `test_that()`) ('test_format_html.R:41:1') - Changing language has no effect when envvar LC_ALL='C'
  
  202. (code run outside of `test_that()`) ('test_format_html.R:48:1') - Changing language has no effect when envvar LC_ALL='C'
  
  203. Export to and import from JSON ('test_format_json.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  204. Export to and import from JSON ('test_format_json.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  205. (code run outside of `test_that()`) ('test_format_json.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  206. Export to JSON (non-data frame) ('test_format_json.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  207. Export to JSON (non-data frame) ('test_format_json.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  208. Export to JSON (non-data frame) ('test_format_json.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  209. Export to JSON (non-data frame) ('test_format_json.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  210. (code run outside of `test_that()`) ('test_format_json.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  211. (code run outside of `test_that()`) ('test_format_json.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  212. (code run outside of `test_that()`) ('test_format_matlab.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  213. Export to and import from parquet ('test_format_parquet.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  214. Export to and import from parquet ('test_format_parquet.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  215. (code run outside of `test_that()`) ('test_format_parquet.R:4:1') - Changing language has no effect when envvar LC_ALL='C'
  
  216. Export to and import from PSV ('test_format_psv.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  217. Export to and import from PSV ('test_format_psv.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  218. (code run outside of `test_that()`) ('test_format_psv.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  219. (code run outside of `test_that()`) ('test_format_psv.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  220. Export to and import from pzfx ('test_format_pzfx.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  221. Export to and import from pzfx ('test_format_pzfx.R:10:9') - Changing language has no effect when envvar LC_ALL='C'
  
  222. Export to and import from pzfx ('test_format_pzfx.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  223. Export to and import from pzfx ('test_format_pzfx.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  224. Export to and import from pzfx ('test_format_pzfx.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  225. (code run outside of `test_that()`) ('test_format_pzfx.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  226. Export to and import from qs ('test_format_qs.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  227. Export to and import from qs ('test_format_qs.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  228. (code run outside of `test_that()`) ('test_format_qs.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  229. Export to and import from qs2 ('test_format_qs2.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  230. Export to and import from qs2 ('test_format_qs2.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  231. (code run outside of `test_that()`) ('test_format_qs2.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  232. Export to and import from Rdata ('test_format_rdata.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  233. Export to and import from Rdata ('test_format_rdata.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  234. Export to and import from Rdata ('test_format_rdata.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  235. Export to and import from Rdata ('test_format_rdata.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  236. Export to and import from Rdata ('test_format_rdata.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  237. Export to and import from Rdata ('test_format_rdata.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  238. Export to and import from Rdata ('test_format_rdata.R:21:9') - Changing language has no effect when envvar LC_ALL='C'
  
  239. Export to and import from Rdata ('test_format_rdata.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  240. Export to and import from Rdata ('test_format_rdata.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  241. (code run outside of `test_that()`) ('test_format_rdata.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  242. Export to and import from rda ('test_format_rdata.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  243. Export to and import from rda ('test_format_rdata.R:36:9') - Changing language has no effect when envvar LC_ALL='C'
  
  244. Export to and import from rda ('test_format_rdata.R:37:9') - Changing language has no effect when envvar LC_ALL='C'
  
  245. Export to and import from rda ('test_format_rdata.R:44:9') - Changing language has no effect when envvar LC_ALL='C'
  
  246. Export to and import from rda ('test_format_rdata.R:45:9') - Changing language has no effect when envvar LC_ALL='C'
  
  247. Export to and import from rda ('test_format_rdata.R:46:9') - Changing language has no effect when envvar LC_ALL='C'
  
  248. Export to and import from rda ('test_format_rdata.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  249. Export to and import from rda ('test_format_rdata.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  250. Export to and import from rda ('test_format_rdata.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  251. (code run outside of `test_that()`) ('test_format_rdata.R:31:1') - Changing language has no effect when envvar LC_ALL='C'
  
  252. Export to and import from rds ('test_format_rds.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  253. Export to and import from rds ('test_format_rds.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  254. (code run outside of `test_that()`) ('test_format_rds.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  255. Export to rds (non-data frame) ('test_format_rds.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  256. Export to rds (non-data frame) ('test_format_rds.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  257. Export to rds (non-data frame) ('test_format_rds.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  258. (code run outside of `test_that()`) ('test_format_rds.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  259. Export to and import from SAS (.xpt) ('test_format_sas.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  260. Export to and import from SAS (.xpt) ('test_format_sas.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  261. (code run outside of `test_that()`) ('test_format_sas.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  262. Export SAS (.sas7bdat) ('test_format_sas.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  263. (code run outside of `test_that()`) ('test_format_sas.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  264. Export to SPSS (.sav) ('test_format_sav.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  265. Export to SPSS (.sav) ('test_format_sav.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  266. Export to SPSS (.sav) ('test_format_sav.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  267. Export to SPSS (.sav) ('test_format_sav.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  268. Export to SPSS (.sav) ('test_format_sav.R:20:9') - Changing language has no effect when envvar LC_ALL='C'
  
  269. Export to SPSS (.sav) ('test_format_sav.R:21:9') - Changing language has no effect when envvar LC_ALL='C'
  
  270. Export to SPSS (.sav) ('test_format_sav.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  271. Export to SPSS (.sav) ('test_format_sav.R:24:9') - Changing language has no effect when envvar LC_ALL='C'
  
  272. Export to SPSS (.sav) ('test_format_sav.R:25:9') - Changing language has no effect when envvar LC_ALL='C'
  
  273. Export to SPSS (.sav) ('test_format_sav.R:28:9') - Changing language has no effect when envvar LC_ALL='C'
  
  274. Export to SPSS (.sav) ('test_format_sav.R:29:9') - Changing language has no effect when envvar LC_ALL='C'
  
  275. (code run outside of `test_that()`) ('test_format_sav.R:2:1') - Changing language has no effect when envvar LC_ALL='C'
  
  276. Export to SPSS compressed (.zsav) ('test_format_sav.R:47:9') - Changing language has no effect when envvar LC_ALL='C'
  
  277. Export to SPSS compressed (.zsav) ('test_format_sav.R:48:9') - Changing language has no effect when envvar LC_ALL='C'
  
  278. Export to SPSS compressed (.zsav) ('test_format_sav.R:49:9') - Changing language has no effect when envvar LC_ALL='C'
  
  279. Export to SPSS compressed (.zsav) ('test_format_sav.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  280. Export to SPSS compressed (.zsav) ('test_format_sav.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  281. Export to SPSS compressed (.zsav) ('test_format_sav.R:54:9') - Changing language has no effect when envvar LC_ALL='C'
  
  282. Export to SPSS compressed (.zsav) ('test_format_sav.R:55:9') - Changing language has no effect when envvar LC_ALL='C'
  
  283. Export to SPSS compressed (.zsav) ('test_format_sav.R:58:9') - Changing language has no effect when envvar LC_ALL='C'
  
  284. Export to SPSS compressed (.zsav) ('test_format_sav.R:59:9') - Changing language has no effect when envvar LC_ALL='C'
  
  285. Export to SPSS compressed (.zsav) ('test_format_sav.R:62:9') - Changing language has no effect when envvar LC_ALL='C'
  
  286. Export to SPSS compressed (.zsav) ('test_format_sav.R:63:9') - Changing language has no effect when envvar LC_ALL='C'
  
  287. (code run outside of `test_that()`) ('test_format_sav.R:36:1') - Changing language has no effect when envvar LC_ALL='C'
  
  288. Import from Systat ('test_format_syd.R:4:5') - Changing language has no effect when envvar LC_ALL='C'
  
  289. (code run outside of `test_that()`) ('test_format_syd.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  290. Export to and import from TSV ('test_format_tsv.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  291. Export to and import from TSV ('test_format_tsv.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  292. (code run outside of `test_that()`) ('test_format_tsv.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  293. (code run outside of `test_that()`) ('test_format_tsv.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  294. Export to Excel (.xlsx) ('test_format_xls.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  295. Export to Excel (.xlsx) ('test_format_xls.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  296. Export to Excel (.xlsx) ('test_format_xls.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  297. Export to Excel (.xlsx) ('test_format_xls.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  298. Export to Excel (.xlsx) ('test_format_xls.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  299. (code run outside of `test_that()`) ('test_format_xls.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  300. (code run outside of `test_that()`) ('test_format_xls.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  301. (code run outside of `test_that()`) ('test_format_xls.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  302. (code run outside of `test_that()`) ('test_format_xls.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  303. Import from Excel (.xls) ('test_format_xls.R:48:5') - Changing language has no effect when envvar LC_ALL='C'
  
  304. Import from Excel (.xls) ('test_format_xls.R:49:5') - Changing language has no effect when envvar LC_ALL='C'
  
  305. Import from Excel (.xls) ('test_format_xls.R:50:5') - Changing language has no effect when envvar LC_ALL='C'
  
  306. (code run outside of `test_that()`) ('test_format_xls.R:47:1') - Changing language has no effect when envvar LC_ALL='C'
  
  307. Import from Excel (.xlsm) ('test_format_xls.R:54:5') - Changing language has no effect when envvar LC_ALL='C'
  
  308. Import from Excel (.xlsm) ('test_format_xls.R:55:5') - Changing language has no effect when envvar LC_ALL='C'
  
  309. Import from Excel (.xlsm) ('test_format_xls.R:56:5') - Changing language has no effect when envvar LC_ALL='C'
  
  310. (code run outside of `test_that()`) ('test_format_xls.R:53:1') - Changing language has no effect when envvar LC_ALL='C'
  
  311. (code run outside of `test_that()`) ('test_format_xls.R:74:1') - Changing language has no effect when envvar LC_ALL='C'
  
  312. Export to and import from XML ('test_format_xml.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  313. Export to and import from XML ('test_format_xml.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  314. (code run outside of `test_that()`) ('test_format_xml.R:15:1') - Changing language has no effect when envvar LC_ALL='C'
  
  315. (code run outside of `test_that()`) ('test_format_xml.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  316. Export to and import from YAML ('test_format_yml.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  317. Export to and import from YAML ('test_format_yml.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  318. (code run outside of `test_that()`) ('test_format_yml.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  319. (code run outside of `test_that()`) ('test_format_yml.R:13:1') - Changing language has no effect when envvar LC_ALL='C'
  
  320. Gather attrs from Stata ('test_gather_attrs.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  321. Gather attrs from Stata ('test_gather_attrs.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  322. Gather attrs from Stata ('test_gather_attrs.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  323. Gather attrs from Stata ('test_gather_attrs.R:10:9') - Changing language has no effect when envvar LC_ALL='C'
  
  324. Gather attrs from Stata ('test_gather_attrs.R:11:9') - Changing language has no effect when envvar LC_ALL='C'
  
  325. Gather attrs from Stata ('test_gather_attrs.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  326. Gather attrs from Stata ('test_gather_attrs.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  327. Gather attrs from Stata ('test_gather_attrs.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  328. Gather attrs from Stata ('test_gather_attrs.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  329. Gather attrs from Stata ('test_gather_attrs.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  330. (code run outside of `test_that()`) ('test_gather_attrs.R:6:5') - Changing language has no effect when envvar LC_ALL='C'
  
  331. Spread attrs from Stata ('test_gather_attrs.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  332. Spread attrs from Stata ('test_gather_attrs.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  333. Spread attrs from Stata ('test_gather_attrs.R:25:9') - Changing language has no effect when envvar LC_ALL='C'
  
  334. Spread attrs from Stata ('test_gather_attrs.R:26:9') - Changing language has no effect when envvar LC_ALL='C'
  
  335. Spread attrs from Stata ('test_gather_attrs.R:27:9') - Changing language has no effect when envvar LC_ALL='C'
  
  336. Spread attrs from Stata ('test_gather_attrs.R:28:9') - Changing language has no effect when envvar LC_ALL='C'
  
  337. (code run outside of `test_that()`) ('test_gather_attrs.R:19:5') - Changing language has no effect when envvar LC_ALL='C'
  
  338. Gather empty attributes ('test_gather_attrs.R:34:9') - Changing language has no effect when envvar LC_ALL='C'
  
  339. Gather empty attributes ('test_gather_attrs.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  340. Gather empty attributes ('test_gather_attrs.R:36:9') - Changing language has no effect when envvar LC_ALL='C'
  
  341. Gather empty attributes ('test_gather_attrs.R:37:9') - Changing language has no effect when envvar LC_ALL='C'
  
  342. (code run outside of `test_that()`) ('test_gather_attrs.R:31:5') - Changing language has no effect when envvar LC_ALL='C'
  
  343. (code run outside of `test_that()`) ('test_gather_attrs.R:40:5') - Changing language has no effect when envvar LC_ALL='C'
  
  344. (code run outside of `test_that()`) ('test_gather_attrs.R:44:5') - Changing language has no effect when envvar LC_ALL='C'
  
  345. (code run outside of `test_that()`) ('test_guess.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  346. (code run outside of `test_that()`) ('test_guess.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  347. Export without file specified ('test_guess.R:24:9') - Changing language has no effect when envvar LC_ALL='C'
  
  348. (code run outside of `test_that()`) ('test_guess.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  349. (code run outside of `test_that()`) ('test_guess.R:28:1') - Changing language has no effect when envvar LC_ALL='C'
  
  350. (code run outside of `test_that()`) ('test_identical.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  351. (code run outside of `test_that()`) ('test_identical.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  352. (code run outside of `test_that()`) ('test_identical.R:18:1') - Changing language has no effect when envvar LC_ALL='C'
  
  353. (code run outside of `test_that()`) ('test_identical.R:25:1') - Changing language has no effect when envvar LC_ALL='C'
  
  354. (code run outside of `test_that()`) ('test_identical.R:32:1') - Changing language has no effect when envvar LC_ALL='C'
  
  355. (code run outside of `test_that()`) ('test_identical.R:38:1') - Changing language has no effect when envvar LC_ALL='C'
  
  356. Data identical (optional arguments) ('test_identical.R:54:9') - Changing language has no effect when envvar LC_ALL='C'
  
  357. (code run outside of `test_that()`) ('test_identical.R:49:1') - Changing language has no effect when envvar LC_ALL='C'
  
  358. Data identical (import_list) ('test_import_list.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  359. Data identical (import_list) ('test_import_list.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  360. Data identical (import_list) ('test_import_list.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  361. (code run outside of `test_that()`) ('test_import_list.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  362. Import multi-object .Rdata in import_list() ('test_import_list.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  363. Import multi-object .Rdata in import_list() ('test_import_list.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  364. (code run outside of `test_that()`) ('test_import_list.R:13:1') - Changing language has no effect when envvar LC_ALL='C'
  
  365. Import multiple HTML tables in import_list() ('test_import_list.R:24:5') - Changing language has no effect when envvar LC_ALL='C'
  
  366. Import multiple HTML tables in import_list() ('test_import_list.R:25:5') - Changing language has no effect when envvar LC_ALL='C'
  
  367. Import multiple HTML tables in import_list() ('test_import_list.R:26:5') - Changing language has no effect when envvar LC_ALL='C'
  
  368. Import multiple HTML tables in import_list() ('test_import_list.R:27:5') - Changing language has no effect when envvar LC_ALL='C'
  
  369. (code run outside of `test_that()`) ('test_import_list.R:22:1') - Changing language has no effect when envvar LC_ALL='C'
  
  370. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  371. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:36:9') - Changing language has no effect when envvar LC_ALL='C'
  
  372. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:37:9') - Changing language has no effect when envvar LC_ALL='C'
  
  373. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:38:9') - Changing language has no effect when envvar LC_ALL='C'
  
  374. (code run outside of `test_that()`) ('test_import_list.R:30:1') - Changing language has no effect when envvar LC_ALL='C'
  
  375. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Changing language has no effect when envvar LC_ALL='C'
  
  376. import_list() preserves 'which' names when specified ('test_import_list.R:46:9') - Changing language has no effect when envvar LC_ALL='C'
  
  377. import_list() preserves 'which' names when specified ('test_import_list.R:47:9') - Changing language has no effect when envvar LC_ALL='C'
  
  378. import_list() preserves 'which' names when specified ('test_import_list.R:48:9') - Changing language has no effect when envvar LC_ALL='C'
  
  379. import_list() preserves 'which' names when specified ('test_import_list.R:49:9') - Changing language has no effect when envvar LC_ALL='C'
  
  380. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Changing language has no effect when envvar LC_ALL='C'
  
  381. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  382. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  383. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  384. (code run outside of `test_that()`) ('test_import_list.R:42:1') - Changing language has no effect when envvar LC_ALL='C'
  
  385. (code run outside of `test_that()`) ('test_import_list.R:57:1') - Changing language has no effect when envvar LC_ALL='C'
  
  386. Import single file via import_list() ('test_import_list.R:77:9') - Changing language has no effect when envvar LC_ALL='C'
  
  387. (code run outside of `test_that()`) ('test_import_list.R:74:1') - Changing language has no effect when envvar LC_ALL='C'
  
  388. Import single file from zip via import_list() ('test_import_list.R:84:9') - Changing language has no effect when envvar LC_ALL='C'
  
  389. Import single file from zip via import_list() ('test_import_list.R:85:9') - Changing language has no effect when envvar LC_ALL='C'
  
  390. Import single file from zip via import_list() ('test_import_list.R:87:9') - Changing language has no effect when envvar LC_ALL='C'
  
  391. (code run outside of `test_that()`) ('test_import_list.R:81:1') - Changing language has no effect when envvar LC_ALL='C'
  
  392. Import multiple files from zip via import_list() ('test_import_list.R:96:9') - Changing language has no effect when envvar LC_ALL='C'
  
  393. Import multiple files from zip via import_list() ('test_import_list.R:98:9') - Changing language has no effect when envvar LC_ALL='C'
  
  394. Import multiple files from zip via import_list() ('test_import_list.R:99:9') - Changing language has no effect when envvar LC_ALL='C'
  
  395. Import multiple files from zip via import_list() ('test_import_list.R:100:9') - Changing language has no effect when envvar LC_ALL='C'
  
  396. (code run outside of `test_that()`) ('test_import_list.R:91:1') - Changing language has no effect when envvar LC_ALL='C'
  
  397. Import multiple files from zip via import_list() ('test_import_list.R:108:9') - invalid uid value replaced by that for user 'nobody'
  
  398. Import multiple files from zip via import_list() ('test_import_list.R:110:9') - Changing language has no effect when envvar LC_ALL='C'
  
  399. Import multiple files from zip via import_list() ('test_import_list.R:112:9') - Changing language has no effect when envvar LC_ALL='C'
  
  400. Import multiple files from zip via import_list() ('test_import_list.R:113:9') - Changing language has no effect when envvar LC_ALL='C'
  
  401. Import multiple files from zip via import_list() ('test_import_list.R:114:9') - Changing language has no effect when envvar LC_ALL='C'
  
  402. (code run outside of `test_that()`) ('test_import_list.R:104:1') - Changing language has no effect when envvar LC_ALL='C'
  
  403. Using setclass in import_list() ('test_import_list.R:122:9') - Changing language has no effect when envvar LC_ALL='C'
  
  404. Using setclass in import_list() ('test_import_list.R:124:9') - Changing language has no effect when envvar LC_ALL='C'
  
  405. (code run outside of `test_that()`) ('test_import_list.R:118:1') - Changing language has no effect when envvar LC_ALL='C'
  
  406. (code run outside of `test_that()`) ('test_import_list.R:128:1') - Changing language has no effect when envvar LC_ALL='C'
  
  407. (code run outside of `test_that()`) ('test_import_list.R:154:1') - Changing language has no effect when envvar LC_ALL='C'
  
  408. (code run outside of `test_that()`) ('test_import_list.R:166:1') - Changing language has no effect when envvar LC_ALL='C'
  
  409. (code run outside of `test_that()`) ('test_import_list.R:183:1') - Changing language has no effect when envvar LC_ALL='C'
  
  410. (code run outside of `test_that()`) ('test_import_list.R:195:1') - Changing language has no effect when envvar LC_ALL='C'
  
  411. Informative message when files are not found #389 ('test_import_list.R:214:9') - Changing language has no effect when envvar LC_ALL='C'
  
  412. Informative message when files are not found #389 ('test_import_list.R:215:9') - Changing language has no effect when envvar LC_ALL='C'
  
  413. (code run outside of `test_that()`) ('test_import_list.R:211:1') - Changing language has no effect when envvar LC_ALL='C'
  
  414. Missing files and rbind ('test_import_list.R:223:9') - Changing language has no effect when envvar LC_ALL='C'
  
  415. Missing files and rbind ('test_import_list.R:224:9') - Changing language has no effect when envvar LC_ALL='C'
  
  416. Missing files and rbind ('test_import_list.R:225:9') - Changing language has no effect when envvar LC_ALL='C'
  
  417. Missing files and rbind ('test_import_list.R:227:9') - Changing language has no effect when envvar LC_ALL='C'
  
  418. (code run outside of `test_that()`) ('test_import_list.R:220:1') - Changing language has no effect when envvar LC_ALL='C'
  
  419. (code run outside of `test_that()`) ('test_mapping.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  420. (code run outside of `test_that()`) ('test_mapping.R:16:1') - Changing language has no effect when envvar LC_ALL='C'
  
  421. (code run outside of `test_that()`) ('test_mapping.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  422. Export matrix to and import from CSV ('test_matrix.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  423. Export matrix to and import from CSV ('test_matrix.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  424. Export matrix to and import from CSV ('test_matrix.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  425. (code run outside of `test_that()`) ('test_matrix.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  426. Set object class ('test_set_class.R:7:5') - Changing language has no effect when envvar LC_ALL='C'
  
  427. Set object class ('test_set_class.R:8:5') - Changing language has no effect when envvar LC_ALL='C'
  
  428. Set object class ('test_set_class.R:9:5') - Changing language has no effect when envvar LC_ALL='C'
  
  429. Set object class ('test_set_class.R:10:5') - Changing language has no effect when envvar LC_ALL='C'
  
  430. Set object class ('test_set_class.R:11:5') - Changing language has no effect when envvar LC_ALL='C'
  
  431. (code run outside of `test_that()`) ('test_set_class.R:4:1') - Changing language has no effect when envvar LC_ALL='C'
  
  432. Set object class as tibble ('test_set_class.R:17:5') - Changing language has no effect when envvar LC_ALL='C'
  
  433. Set object class as tibble ('test_set_class.R:18:5') - Changing language has no effect when envvar LC_ALL='C'
  
  434. Set object class as tibble ('test_set_class.R:19:5') - Changing language has no effect when envvar LC_ALL='C'
  
  435. (code run outside of `test_that()`) ('test_set_class.R:14:1') - Changing language has no effect when envvar LC_ALL='C'
  
  436. Set object class as data.table ('test_set_class.R:23:5') - Changing language has no effect when envvar LC_ALL='C'
  
  437. Set object class as data.table ('test_set_class.R:26:9') - Changing language has no effect when envvar LC_ALL='C'
  
  438. Set object class as data.table ('test_set_class.R:27:9') - Changing language has no effect when envvar LC_ALL='C'
  
  439. (code run outside of `test_that()`) ('test_set_class.R:22:1') - Changing language has no effect when envvar LC_ALL='C'
  
  440. Set object class as arrow table ('test_set_class.R:35:5') - Changing language has no effect when envvar LC_ALL='C'
  
  441. Set object class as arrow table ('test_set_class.R:36:5') - Changing language has no effect when envvar LC_ALL='C'
  
  442. Set object class as arrow table ('test_set_class.R:37:5') - Changing language has no effect when envvar LC_ALL='C'
  
  443. Set object class as arrow table ('test_set_class.R:40:9') - Changing language has no effect when envvar LC_ALL='C'
  
  444. Set object class as arrow table ('test_set_class.R:41:9') - Changing language has no effect when envvar LC_ALL='C'
  
  445. (code run outside of `test_that()`) ('test_set_class.R:31:1') - Changing language has no effect when envvar LC_ALL='C'
  
  446. ArrowTabular can be exported ('test_set_class.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  447. (code run outside of `test_that()`) ('test_set_class.R:45:1') - Changing language has no effect when envvar LC_ALL='C'
  
  448. (code run outside of `test_that()`) ('test_set_class.R:55:1') - Changing language has no effect when envvar LC_ALL='C'
  
  449. (code run outside of `test_that()`) ('test_suggestions.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  450. (code run outside of `test_that()`) ('test_suggestions.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  451. (code run outside of `test_that()`) ('test_suggestions.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  452. (code run outside of `test_that()`) ('test_trust.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  453. (code run outside of `test_that()`) ('test_trust.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  454. (code run outside of `test_that()`) ('test_trust.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  455. (code run outside of `test_that()`) ('test_trust.R:31:1') - Changing language has no effect when envvar LC_ALL='C'
  
  456. (code run outside of `test_that()`) ('test_trust.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  457. (code run outside of `test_that()`) ('test_trust.R:55:1') - Changing language has no effect when envvar LC_ALL='C'
  
  458. (code run outside of `test_that()`) ('test_trust.R:63:1') - Changing language has no effect when envvar LC_ALL='C'
  
  459. (code run outside of `test_that()`) ('test_trust.R:73:1') - Changing language has no effect when envvar LC_ALL='C'
  
  == Failed ======================================================================
  -- 1. Error ('test_compress.R:53:13'): Export to compressed (gz, bz2) / import -
  Error in `regexpr(as.character(pattern), text, ignore.case, perl, fixed, 
      useBytes)`: NA in coercion to boolean
  Backtrace:
       x
    1. \-withr::with_tempfile(...) at test_compress.R:52:9
    2.   \-base::eval(substitute(code), envir = env)
    3.     \-base::eval(substitute(code), envir = env)
    4.       \-rio::export(iris, iris_path) at test_compress.R:53:13
    5.         \-rio:::compress_out(cfile = cfile, filename = file, type = compress)
    6.           \-rio:::.compress_rutils(filename, cfile, ext = ext)
    7.             +-R.utils::compressFile(...)
    8.             \-R.utils::compressFile.default(...)
    9.               +-R.utils::popTemporaryFile(destnameT)
   10.               \-R.utils::popTemporaryFile.default(destnameT)
   11.                 \-base::regexpr(pattern, "", pathnameT)
  
  -- 2. Error ('test_compress.R:82:13'): Prevent the reuse of `which` for zip and 
  Error in `regexpr(as.character(pattern), text, ignore.case, perl, fixed, 
      useBytes)`: NA in coercion to boolean
  Backtrace:
       x
    1. \-withr::with_tempfile(...) at test_compress.R:81:9
    2.   \-base::eval(substitute(code), envir = env)
    3.     \-base::eval(substitute(code), envir = env)
    4.       \-rio::export(list(some_iris = head(iris)), data_path) at test_compress.R:82:13
    5.         \-rio:::compress_out(cfile = cfile, filename = file, type = compress)
    6.           \-rio:::.compress_rutils(filename, cfile, ext = ext)
    7.             +-R.utils::compressFile(...)
    8.             \-R.utils::compressFile.default(...)
    9.               +-R.utils::popTemporaryFile(destnameT)
   10.               \-R.utils::popTemporaryFile.default(destnameT)
   11.                 \-base::regexpr(pattern, "", pathnameT)
  
  -- 3. Failure ('test_export_corner_cases.R:24:9'): export to nonexisting directo
  `export(iris, file.path(output_dir, "iris.csv.gz"))` threw an error.
  Message: NA in coercion to boolean
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempdir(...) at test_export_corner_cases.R:21:5
    2. | \-withr::with_dir(tmp, code)
    3. |   \-base::force(code)
    4. +-testthat::expect_error(...) at test_export_corner_cases.R:24:9
    5. | \-testthat:::quasi_capture(...)
    6. |   +-testthat (local) .capture(...)
    7. |   | \-base::withCallingHandlers(...)
    8. |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. \-rio::export(iris, file.path(output_dir, "iris.csv.gz"))
   10.   \-rio:::compress_out(cfile = cfile, filename = file, type = compress)
   11.     \-rio:::.compress_rutils(filename, cfile, ext = ext)
   12.       +-R.utils::compressFile(...)
   13.       \-R.utils::compressFile.default(...)
   14.         +-R.utils::popTemporaryFile(destnameT)
   15.         \-R.utils::popTemporaryFile.default(destnameT)
   16.           \-base::regexpr(pattern, "", pathnameT)
  
  -- 4. Failure ('test_export_corner_cases.R:25:9'): export to nonexisting directo
  file.exists(file.path(output_dir, "iris.csv.gz")) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  Backtrace:
      x
   1. +-withr::with_tempdir(...) at test_export_corner_cases.R:21:5
   2. | \-withr::with_dir(tmp, code)
   3. |   \-base::force(code)
   4. \-testthat::expect_true(file.exists(file.path(output_dir, "iris.csv.gz"))) at test_export_corner_cases.R:25:9
  
  -- 5. Failure ('test_format_yml.R:19:9'): utf-8 --------------------------------
  `content` not equal to y$col.
  6/7 mismatches
  x[2]: "\u010d"
  y[2]: "<U+010D>"
  
  x[3]: "\u0161"
  y[3]: "<U+0161>"
  
  x[4]: "\u00c4"
  y[4]: "<U+00C4>"
  
  x[5]: "\u5b57"
  y[5]: "<U+5B57>"
  
  x[6]: "\u30a2"
  y[6]: "<U+30A2>"
  Backtrace:
      x
   1. \-withr::with_tempfile(...) at test_format_yml.R:15:5
   2.   \-base::eval(substitute(code), envir = env)
   3.     \-base::eval(substitute(code), envir = env)
   4.       \-testthat::expect_equal(content, y$col) at test_format_yml.R:19:9
  
  -- 6. Error ('test_import_list.R:133:9'): Object names are preserved by import_l
  Error: Suggested package `readODS` is not available. Please install it individually or use `install_formats()`
  Backtrace:
      x
   1. +-withr::with_tempdir(...) at test_import_list.R:129:5
   2. | \-withr::with_dir(tmp, code)
   3. |   \-base::force(code)
   4. \-rio::export(...) at test_import_list.R:133:9
   5.   +-rio:::.export(file = file, x = x, ...)
   6.   \-rio:::.export.rio_ods(file = file, x = x, ...)
   7.     \-rio:::.check_pkg_availability("readODS")
  
  == DONE ========================================================================
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  '/tmp/th798/26735458/R-release/1231/rio.Rcheck/00check.log'
for details.

[1] "2026-01-30 03:51:14 MST"
[1] "2026-01-30 03:51:14 MST"
Installing package into '/tmp/th798/26735458/R-release/1231/library'
(as 'lib' is unspecified)
Warning: invalid package '/scratch/th798/data.table-revdeps/2026-01-30/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz'
Error: ERROR: no packages specified
[1] "2026-01-30 03:51:15 MST"
* using log directory '/tmp/th798/26735458/R-release/1231/rio.Rcheck'
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Spack GCC) 12.2.0
    GNU Fortran (Spack GCC) 12.2.0
* running under: Red Hat Enterprise Linux 8.10 (Ootpa)
* using session charset: ASCII
* checking for file 'rio/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rio' version '1.2.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: 'readODS'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'rio' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: 'readODS'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library("testthat")
  > library("rio")
  > test_check("rio", reporter = "summary")
  characterize: 
  characterize()/factorize(): W.WW.WW.WW.WW.W.W
  check_file: ..................W.....W....W.....W....W
  compress: 
  Compressed files: W.W.W.W.W.W.W  adding: file311d146e935128.csv (deflated 78%)
  W.W.W.W.WW.W.W.W.WW.W.W.W.W.WW.W.W.W.W.WW.W.W.W.WW.W.W.W.W.W  adding: mtcars1.csv (deflated 48%)
    adding: mtcars2.csv (deflated 50%)
    adding: mtcars3.csv (deflated 47%)
  W...W.W.W1W  adding: file311d141f712e8e.xlsx (deflated 10%)
  ...W../usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W../usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W../usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W../usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .W../usr/bin/gtar: NA: Not found in archive
  /usr/bin/gtar: Exiting with failure status due to previous errors
  .2W........WSW  adding: tmp/th798/26735458/RtmpBOwjaj/file311d1418906b33.csv (stored 0%)
  .W.W.W.W  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  W.W..W
  convert: W.W.WW.W.W.W.W
  create_outfiles: ...W.....W
  errors: .W....W..W.WW..W.W
  export_corner_cases: W..W.WW..W.WW.3W4W
  export_list: ..W.W.  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  W.  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  W.W.W.W.W......W..  adding: file_1.csv (deflated 48%)
    adding: file_2.csv (deflated 50%)
    adding: file_3.csv (deflated 47%)
  .W.W.W.W....W.WSW
  extensions: S
  format_R: W.W.W.W.W
  format_arff: W.W.W
  format_csv: W.WW.W.W.WW.W.W.W.WW.W.WW.W.W.W.W.W.W.W..W...W
  format_csvy: W.W.W
  format_dbf: W.W.W.W
  format_dif: W.W
  format_dta: W..WW...WW...W..W
  format_eviews: W.W
  format_external_packages: ...........W....W
  format_feather: W.W.W
  format_fortran: W.W
  format_fst: W.W.W
  format_fwf: W.W.W.W.W...WW.W.W..W
  format_html: W.W.WW.WW.W.WW.W.W.W.W...............W
  format_json: W.W.WW.W.W.W.W.W
  format_matlab: SW
  format_mtp: 
  format_ods: S
  format_parquet: W.W.W
  format_psv: W.W.W..W
  format_pzfx: W.W.W.W.W.W
  format_qs: W.W.W
  format_qs2: W.W.W
  format_rdata: W.W.W.W.W.W.W.W.W..WW.W.W.W.W.W.W.W.W..W
  format_rds: W.W.WW.W.W.W
  format_rec: 
  format_sas: W.W.WW.W
  format_sav: W.W.W.W.W.W.W.W.W.W.W...WW.W.W.W.W.W.W.W.W.W.W.W
  format_syd: W.W
  format_tsv: W.W.W..W
  format_xls: W.W.W.W.W.W.W...W..WW.W.W.WW.W.W...W.W
  format_xml: W.W.W...............W
  format_yml: W.W...W5W
  gather_attrs: W.W.W.W.W.W.W.W.W.W.WW.W.W.W.W.W.WW.W.W.W.W.W.W
  guess: .....W........WW.W..W
  identical: ...W....W.W..W.W....W..W.W
  import_list: .W.W.W.WW.W.WW.W.W.W.WW.W.W.W.WW.W.W.W.W.W.W.W.W.WSWW.W  adding: file311d14f0c3299.csv (deflated 58%)
  W.W.W.W  adding: mtcars1.csv (deflated 48%)
    adding: mtcars2.csv (deflated 50%)
    adding: mtcars3.csv (deflated 47%)
  ..W..W.W.W.WW..W..W.W.W.WW.W.W6W..WSWSWSWW.W..WW.W.W..W..W
  mapping: .........W.W..W
  matrix: W.W.W.W
  remote: S
  set_class: W.W.W.W.W.WW.W.W.WW.W.W.WW.W.W.W.W.W.W.W.W
  suggestions: SWSWSW
  trust: ..W..W..W..W...W..W...W...W
  
  == Skipped =====================================================================
  1. tar export error for R < 4.0.3 ('test_compress.R:101:5') - Reason: getRversion() >= "4.0.3" is TRUE
  
  2. tar export error for R < 4.0.3 ('test_export_list.R:67:5') - Reason: getRversion() >= "4.0.3" is TRUE
  
  3. (code run outside of `test_that()`) ('test_extensions.R:2:1') - Reason: On CRAN
  
  4. Export to and import from matlab ('test_format_matlab.R:4:5') - Reason: failing mysteriously
  
  5. (code run outside of `test_that()`) ('test_format_ods.R:1:1') - Reason: readODS cannot be loaded
  
  6. import_list() preserves 'which' names when specified ods ('test_import_list.R:58:5') - Reason: readODS cannot be loaded
  
  7. URL #294 ('test_import_list.R:167:5') - Reason: On CRAN
  
  8. Universal dummy `which` #326 ('test_import_list.R:184:5') - Reason: readODS cannot be loaded
  
  9. Universal dummy `which` (Suggests) #326 ('test_import_list.R:199:5') - Reason: readODS cannot be loaded
  
  10. (code run outside of `test_that()`) ('test_remote.R:1:1') - Reason: On CRAN
  
  11. uninstalled_formats() ('test_suggestions.R:2:5') - Reason: On CRAN
  
  12. show_unsupported_formats (in the fully supported environment) on CI ('test_suggestions.R:13:5') - Reason: On CRAN
  
  13. show_unsupported_formats (in the partial supported environment) on CI ('test_suggestions.R:22:5') - Reason: On CRAN
  
  == Warnings ====================================================================
  1. test characterize.default() ('test_characterize.R:9:5') - Changing language has no effect when envvar LC_ALL='C'
  
  2. (code run outside of `test_that()`) ('test_characterize.R:8:1') - Changing language has no effect when envvar LC_ALL='C'
  
  3. test characterize.default() ('test_characterize.R:13:5') - Changing language has no effect when envvar LC_ALL='C'
  
  4. (code run outside of `test_that()`) ('test_characterize.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  5. test factorize.data.frame() ('test_characterize.R:17:5') - Changing language has no effect when envvar LC_ALL='C'
  
  6. (code run outside of `test_that()`) ('test_characterize.R:16:1') - Changing language has no effect when envvar LC_ALL='C'
  
  7. test factorize.data.frame() ('test_characterize.R:21:5') - Changing language has no effect when envvar LC_ALL='C'
  
  8. (code run outside of `test_that()`) ('test_characterize.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  9. test factorize coerce_character ('test_characterize.R:25:5') - Changing language has no effect when envvar LC_ALL='C'
  
  10. test factorize coerce_character ('test_characterize.R:26:5') - Changing language has no effect when envvar LC_ALL='C'
  
  11. (code run outside of `test_that()`) ('test_characterize.R:24:1') - Changing language has no effect when envvar LC_ALL='C'
  
  12. (code run outside of `test_that()`) ('test_check_file.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  13. (code run outside of `test_that()`) ('test_check_file.R:27:1') - Changing language has no effect when envvar LC_ALL='C'
  
  14. (code run outside of `test_that()`) ('test_check_file.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  15. (code run outside of `test_that()`) ('test_check_file.R:50:1') - Changing language has no effect when envvar LC_ALL='C'
  
  16. (code run outside of `test_that()`) ('test_check_file.R:62:1') - Changing language has no effect when envvar LC_ALL='C'
  
  17. Recognize compressed file types ('test_compress.R:4:5') - Changing language has no effect when envvar LC_ALL='C'
  
  18. Recognize compressed file types ('test_compress.R:5:5') - Changing language has no effect when envvar LC_ALL='C'
  
  19. Recognize compressed file types ('test_compress.R:6:5') - Changing language has no effect when envvar LC_ALL='C'
  
  20. Recognize compressed file types ('test_compress.R:7:5') - Changing language has no effect when envvar LC_ALL='C'
  
  21. Recognize compressed file types ('test_compress.R:8:5') - Changing language has no effect when envvar LC_ALL='C'
  
  22. Recognize compressed file types ('test_compress.R:9:5') - Changing language has no effect when envvar LC_ALL='C'
  
  23. (code run outside of `test_that()`) ('test_compress.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  24. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  25. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  26. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  27. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  28. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  29. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  30. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  31. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  32. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  33. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  34. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  35. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  36. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  37. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  38. Export to compressed (zip, tar) / import ('test_compress.R:24:17') - Changing language has no effect when envvar LC_ALL='C'
  
  39. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  40. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  41. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  42. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  43. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  44. Export to compressed (zip, tar) / import ('test_compress.R:24:17') - Changing language has no effect when envvar LC_ALL='C'
  
  45. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  46. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  47. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  48. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  49. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  50. Export to compressed (zip, tar) / import ('test_compress.R:17:13') - invalid uid value replaced by that for user 'nobody'
  
  51. Export to compressed (zip, tar) / import ('test_compress.R:18:13') - Changing language has no effect when envvar LC_ALL='C'
  
  52. Export to compressed (zip, tar) / import ('test_compress.R:19:13') - Changing language has no effect when envvar LC_ALL='C'
  
  53. Export to compressed (zip, tar) / import ('test_compress.R:20:13') - Changing language has no effect when envvar LC_ALL='C'
  
  54. Export to compressed (zip, tar) / import ('test_compress.R:22:13') - Changing language has no effect when envvar LC_ALL='C'
  
  55. Export to compressed (zip, tar) / import ('test_compress.R:27:17') - Changing language has no effect when envvar LC_ALL='C'
  
  56. (code run outside of `test_that()`) ('test_compress.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  57. Multi-item zip ('test_compress.R:40:13') - Changing language has no effect when envvar LC_ALL='C'
  
  58. Multi-item zip ('test_compress.R:43:13') - Changing language has no effect when envvar LC_ALL='C'
  
  59. Multi-item zip ('test_compress.R:44:13') - Changing language has no effect when envvar LC_ALL='C'
  
  60. (code run outside of `test_that()`) ('test_compress.R:33:1') - Changing language has no effect when envvar LC_ALL='C'
  
  61. (code run outside of `test_that()`) ('test_compress.R:49:1') - Changing language has no effect when envvar LC_ALL='C'
  
  62. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  63. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  64. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  65. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  66. Prevent the reuse of `which` for zip and tar ('test_compress.R:71:13') - invalid uid value replaced by that for user 'nobody'
  
  67. (code run outside of `test_that()`) ('test_compress.R:66:1') - Changing language has no effect when envvar LC_ALL='C'
  
  68. (code run outside of `test_that()`) ('test_compress.R:89:1') - Changing language has no effect when envvar LC_ALL='C'
  
  69. (code run outside of `test_that()`) ('test_compress.R:100:1') - Changing language has no effect when envvar LC_ALL='C'
  
  70. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  71. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  72. Wild zip and tar ref $425 ('test_compress.R:122:13') - invalid uid value replaced by that for user 'nobody'
  
  73. (code run outside of `test_that()`) ('test_compress.R:107:1') - Changing language has no effect when envvar LC_ALL='C'
  
  74. Relative path #438 ('test_compress.R:137:9') - Changing language has no effect when envvar LC_ALL='C'
  
  75. (code run outside of `test_that()`) ('test_compress.R:128:1') - Changing language has no effect when envvar LC_ALL='C'
  
  76. (code run outside of `test_that()`) ('test_compress.R:141:1') - Changing language has no effect when envvar LC_ALL='C'
  
  77. Basic file conversion ('test_convert.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  78. Basic file conversion ('test_convert.R:10:9') - Changing language has no effect when envvar LC_ALL='C'
  
  79. (code run outside of `test_that()`) ('test_convert.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  80. File conversion with arguments ('test_convert.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  81. File conversion with arguments ('test_convert.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  82. File conversion with arguments ('test_convert.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  83. (code run outside of `test_that()`) ('test_convert.R:14:1') - Changing language has no effect when envvar LC_ALL='C'
  
  84. (code run outside of `test_that()`) ('test_convert.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  85. (code run outside of `test_that()`) ('test_create_outfiles.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  86. (code run outside of `test_that()`) ('test_create_outfiles.R:17:1') - Changing language has no effect when envvar LC_ALL='C'
  
  87. (code run outside of `test_that()`) ('test_errors.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  88. (code run outside of `test_that()`) ('test_errors.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  89. (code run outside of `test_that()`) ('test_errors.R:19:1') - Changing language has no effect when envvar LC_ALL='C'
  
  90. (code run outside of `test_that()`) ('test_errors.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  91. Column widths printed for fixed-width format ('test_errors.R:34:9') - Changing language has no effect when envvar LC_ALL='C'
  
  92. (code run outside of `test_that()`) ('test_errors.R:32:1') - Changing language has no effect when envvar LC_ALL='C'
  
  93. (code run outside of `test_that()`) ('test_errors.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  94. export to nonexisting directory #347 ('test_export_corner_cases.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  95. export to nonexisting directory #347 ('test_export_corner_cases.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  96. (code run outside of `test_that()`) ('test_export_corner_cases.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  97. export to existing directory (contra previous one) #347 ('test_export_corner_cases.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  98. export to existing directory (contra previous one) #347 ('test_export_corner_cases.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  99. (code run outside of `test_that()`) ('test_export_corner_cases.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  100. export to nonexisting directory also for compressed file  #347 ('test_export_corner_cases.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  101. export to nonexisting directory also for compressed file  #347 ('test_export_corner_cases.R:25:9') - Changing language has no effect when envvar LC_ALL='C'
  
  102. (code run outside of `test_that()`) ('test_export_corner_cases.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  103. export_list() works ('test_export_list.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  104. export_list() works ('test_export_list.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  105. export_list() works ('test_export_list.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  106. export_list() works ('test_export_list.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  107. export_list() works ('test_export_list.R:21:9') - Changing language has no effect when envvar LC_ALL='C'
  
  108. export_list() works ('test_export_list.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  109. export_list() works ('test_export_list.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  110. export_list() works ('test_export_list.R:26:9') - Changing language has no effect when envvar LC_ALL='C'
  
  111. (code run outside of `test_that()`) ('test_export_list.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  112. archive formats, #415 ('test_export_list.R:46:9') - invalid uid value replaced by that for user 'nobody'
  
  113. archive formats, #415 ('test_export_list.R:47:9') - invalid uid value replaced by that for user 'nobody'
  
  114. archive formats, #415 ('test_export_list.R:48:9') - invalid uid value replaced by that for user 'nobody'
  
  115. (code run outside of `test_that()`) ('test_export_list.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  116. List length of one, #385 ('test_export_list.R:62:9') - Changing language has no effect when envvar LC_ALL='C'
  
  117. (code run outside of `test_that()`) ('test_export_list.R:52:1') - Changing language has no effect when envvar LC_ALL='C'
  
  118. (code run outside of `test_that()`) ('test_export_list.R:66:1') - Changing language has no effect when envvar LC_ALL='C'
  
  119. Export / Import to .R dump file ('test_format_R.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  120. Export / Import to .R dump file ('test_format_R.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  121. Export / Import to .R dump file ('test_format_R.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  122. Export / Import to .R dump file ('test_format_R.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  123. (code run outside of `test_that()`) ('test_format_R.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  124. Weka (.arff) imports/exports ('test_format_arff.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  125. Weka (.arff) imports/exports ('test_format_arff.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  126. (code run outside of `test_that()`) ('test_format_arff.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  127. Export to CSV ('test_format_csv.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  128. (code run outside of `test_that()`) ('test_format_csv.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  129. Export (Append) to CSV ('test_format_csv.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  130. Export (Append) to CSV ('test_format_csv.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  131. (code run outside of `test_that()`) ('test_format_csv.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  132. (code run outside of `test_that()`) ('test_format_csv.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  133. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:29:9') - Changing language has no effect when envvar LC_ALL='C'
  
  134. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:31:9') - Changing language has no effect when envvar LC_ALL='C'
  
  135. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:34:9') - Changing language has no effect when envvar LC_ALL='C'
  
  136. Import from (European-style) CSV with semicolon separator ('test_format_csv.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  137. (code run outside of `test_that()`) ('test_format_csv.R:26:1') - Changing language has no effect when envvar LC_ALL='C'
  
  138. Export to and Import from CSV2 ('test_format_csv.R:42:9') - Changing language has no effect when envvar LC_ALL='C'
  
  139. Export to and Import from CSV2 ('test_format_csv.R:43:9') - Changing language has no effect when envvar LC_ALL='C'
  
  140. (code run outside of `test_that()`) ('test_format_csv.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  141. Export to and Import from TSV with CSV extension ('test_format_csv.R:50:9') - Changing language has no effect when envvar LC_ALL='C'
  
  142. Export to and Import from TSV with CSV extension ('test_format_csv.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  143. Export to and Import from TSV with CSV extension ('test_format_csv.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  144. Export to and Import from TSV with CSV extension ('test_format_csv.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  145. Export to and Import from TSV with CSV extension ('test_format_csv.R:54:9') - Changing language has no effect when envvar LC_ALL='C'
  
  146. Export to and Import from TSV with CSV extension ('test_format_csv.R:55:9') - Changing language has no effect when envvar LC_ALL='C'
  
  147. Export to and Import from TSV with CSV extension ('test_format_csv.R:56:9') - Changing language has no effect when envvar LC_ALL='C'
  
  148. (code run outside of `test_that()`) ('test_format_csv.R:47:1') - Changing language has no effect when envvar LC_ALL='C'
  
  149. (code run outside of `test_that()`) ('test_format_csv.R:60:1') - Changing language has no effect when envvar LC_ALL='C'
  
  150. (code run outside of `test_that()`) ('test_format_csv.R:68:1') - Changing language has no effect when envvar LC_ALL='C'
  
  151. Export to and import from CSVY ('test_format_csvy.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  152. Export to and import from CSVY ('test_format_csvy.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  153. (code run outside of `test_that()`) ('test_format_csvy.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  154. Export to and import from XBASE (.dbf) ('test_format_dbf.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  155. Export to and import from XBASE (.dbf) ('test_format_dbf.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  156. Export to and import from XBASE (.dbf) ('test_format_dbf.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  157. (code run outside of `test_that()`) ('test_format_dbf.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  158. Import from DIF ('test_format_dif.R:3:5') - Changing language has no effect when envvar LC_ALL='C'
  
  159. (code run outside of `test_that()`) ('test_format_dif.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  160. Export to Stata ('test_format_dta.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  161. (code run outside of `test_that()`) ('test_format_dta.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  162. Import from Stata (read_dta) ('test_format_dta.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  163. (code run outside of `test_that()`) ('test_format_dta.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  164. Import from Stata with extended Haven features (read_dta) ('test_format_dta.R:25:9') - Changing language has no effect when envvar LC_ALL='C'
  
  165. (code run outside of `test_that()`) ('test_format_dta.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  166. (code run outside of `test_that()`) ('test_format_dta.R:34:1') - Changing language has no effect when envvar LC_ALL='C'
  
  167. Import from EViews ('test_format_eviews.R:3:5') - Changing language has no effect when envvar LC_ALL='C'
  
  168. (code run outside of `test_that()`) ('test_format_eviews.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  169. (code run outside of `test_that()`) ('test_format_external_packages.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  170. (code run outside of `test_that()`) ('test_format_external_packages.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  171. Export to and import from feather ('test_format_feather.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  172. Export to and import from feather ('test_format_feather.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  173. (code run outside of `test_that()`) ('test_format_feather.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  174. Import from Fortran ('test_format_fortran.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  175. (code run outside of `test_that()`) ('test_format_fortran.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  176. Export to and import from fst ('test_format_fst.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  177. Export to and import from fst ('test_format_fst.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  178. (code run outside of `test_that()`) ('test_format_fst.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  179. Export to and import from FWF .fwf ('test_format_fwf.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  180. Export to and import from FWF .fwf ('test_format_fwf.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  181. Export to and import from FWF .fwf ('test_format_fwf.R:10:9') - Changing language has no effect when envvar LC_ALL='C'
  
  182. Export to and import from FWF .fwf ('test_format_fwf.R:11:9') - Changing language has no effect when envvar LC_ALL='C'
  
  183. Export to and import from FWF .fwf ('test_format_fwf.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  184. (code run outside of `test_that()`) ('test_format_fwf.R:5:1') - Changing language has no effect when envvar LC_ALL='C'
  
  185. Export to and import from FWF .txt ('test_format_fwf.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  186. Export to and import from FWF .txt ('test_format_fwf.R:24:9') - Changing language has no effect when envvar LC_ALL='C'
  
  187. (code run outside of `test_that()`) ('test_format_fwf.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  188. (code run outside of `test_that()`) ('test_format_fwf.R:28:1') - Changing language has no effect when envvar LC_ALL='C'
  
  189. Export to and import from HTML ('test_format_html.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  190. Export to and import from HTML ('test_format_html.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  191. (code run outside of `test_that()`) ('test_format_html.R:15:1') - Changing language has no effect when envvar LC_ALL='C'
  
  192. Export to HTML with ampersands ('test_format_html.R:30:9') - Changing language has no effect when envvar LC_ALL='C'
  
  193. (code run outside of `test_that()`) ('test_format_html.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  194. Import from HTML ('test_format_html.R:37:5') - Changing language has no effect when envvar LC_ALL='C'
  
  195. Import from HTML ('test_format_html.R:38:5') - Changing language has no effect when envvar LC_ALL='C'
  
  196. (code run outside of `test_that()`) ('test_format_html.R:35:1') - Changing language has no effect when envvar LC_ALL='C'
  
  197. Import from HTML with multiple tbody elements ('test_format_html.R:42:5') - Changing language has no effect when envvar LC_ALL='C'
  
  198. Import from HTML with multiple tbody elements ('test_format_html.R:43:5') - Changing language has no effect when envvar LC_ALL='C'
  
  199. Import from HTML with multiple tbody elements ('test_format_html.R:44:5') - Changing language has no effect when envvar LC_ALL='C'
  
  200. Import from HTML with multiple tbody elements ('test_format_html.R:45:5') - Changing language has no effect when envvar LC_ALL='C'
  
  201. (code run outside of `test_that()`) ('test_format_html.R:41:1') - Changing language has no effect when envvar LC_ALL='C'
  
  202. (code run outside of `test_that()`) ('test_format_html.R:48:1') - Changing language has no effect when envvar LC_ALL='C'
  
  203. Export to and import from JSON ('test_format_json.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  204. Export to and import from JSON ('test_format_json.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  205. (code run outside of `test_that()`) ('test_format_json.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  206. Export to JSON (non-data frame) ('test_format_json.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  207. Export to JSON (non-data frame) ('test_format_json.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  208. Export to JSON (non-data frame) ('test_format_json.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  209. Export to JSON (non-data frame) ('test_format_json.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  210. (code run outside of `test_that()`) ('test_format_json.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  211. (code run outside of `test_that()`) ('test_format_json.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  212. (code run outside of `test_that()`) ('test_format_matlab.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  213. Export to and import from parquet ('test_format_parquet.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  214. Export to and import from parquet ('test_format_parquet.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  215. (code run outside of `test_that()`) ('test_format_parquet.R:4:1') - Changing language has no effect when envvar LC_ALL='C'
  
  216. Export to and import from PSV ('test_format_psv.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  217. Export to and import from PSV ('test_format_psv.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  218. (code run outside of `test_that()`) ('test_format_psv.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  219. (code run outside of `test_that()`) ('test_format_psv.R:10:1') - Changing language has no effect when envvar LC_ALL='C'
  
  220. Export to and import from pzfx ('test_format_pzfx.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  221. Export to and import from pzfx ('test_format_pzfx.R:10:9') - Changing language has no effect when envvar LC_ALL='C'
  
  222. Export to and import from pzfx ('test_format_pzfx.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  223. Export to and import from pzfx ('test_format_pzfx.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  224. Export to and import from pzfx ('test_format_pzfx.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  225. (code run outside of `test_that()`) ('test_format_pzfx.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  226. Export to and import from qs ('test_format_qs.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  227. Export to and import from qs ('test_format_qs.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  228. (code run outside of `test_that()`) ('test_format_qs.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  229. Export to and import from qs2 ('test_format_qs2.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  230. Export to and import from qs2 ('test_format_qs2.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  231. (code run outside of `test_that()`) ('test_format_qs2.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  232. Export to and import from Rdata ('test_format_rdata.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  233. Export to and import from Rdata ('test_format_rdata.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  234. Export to and import from Rdata ('test_format_rdata.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  235. Export to and import from Rdata ('test_format_rdata.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  236. Export to and import from Rdata ('test_format_rdata.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  237. Export to and import from Rdata ('test_format_rdata.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  238. Export to and import from Rdata ('test_format_rdata.R:21:9') - Changing language has no effect when envvar LC_ALL='C'
  
  239. Export to and import from Rdata ('test_format_rdata.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  240. Export to and import from Rdata ('test_format_rdata.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  241. (code run outside of `test_that()`) ('test_format_rdata.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  242. Export to and import from rda ('test_format_rdata.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  243. Export to and import from rda ('test_format_rdata.R:36:9') - Changing language has no effect when envvar LC_ALL='C'
  
  244. Export to and import from rda ('test_format_rdata.R:37:9') - Changing language has no effect when envvar LC_ALL='C'
  
  245. Export to and import from rda ('test_format_rdata.R:44:9') - Changing language has no effect when envvar LC_ALL='C'
  
  246. Export to and import from rda ('test_format_rdata.R:45:9') - Changing language has no effect when envvar LC_ALL='C'
  
  247. Export to and import from rda ('test_format_rdata.R:46:9') - Changing language has no effect when envvar LC_ALL='C'
  
  248. Export to and import from rda ('test_format_rdata.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  249. Export to and import from rda ('test_format_rdata.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  250. Export to and import from rda ('test_format_rdata.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  251. (code run outside of `test_that()`) ('test_format_rdata.R:31:1') - Changing language has no effect when envvar LC_ALL='C'
  
  252. Export to and import from rds ('test_format_rds.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  253. Export to and import from rds ('test_format_rds.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  254. (code run outside of `test_that()`) ('test_format_rds.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  255. Export to rds (non-data frame) ('test_format_rds.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  256. Export to rds (non-data frame) ('test_format_rds.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  257. Export to rds (non-data frame) ('test_format_rds.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  258. (code run outside of `test_that()`) ('test_format_rds.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  259. Export to and import from SAS (.xpt) ('test_format_sas.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  260. Export to and import from SAS (.xpt) ('test_format_sas.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  261. (code run outside of `test_that()`) ('test_format_sas.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  262. Export SAS (.sas7bdat) ('test_format_sas.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  263. (code run outside of `test_that()`) ('test_format_sas.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  264. Export to SPSS (.sav) ('test_format_sav.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  265. Export to SPSS (.sav) ('test_format_sav.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  266. Export to SPSS (.sav) ('test_format_sav.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  267. Export to SPSS (.sav) ('test_format_sav.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  268. Export to SPSS (.sav) ('test_format_sav.R:20:9') - Changing language has no effect when envvar LC_ALL='C'
  
  269. Export to SPSS (.sav) ('test_format_sav.R:21:9') - Changing language has no effect when envvar LC_ALL='C'
  
  270. Export to SPSS (.sav) ('test_format_sav.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  271. Export to SPSS (.sav) ('test_format_sav.R:24:9') - Changing language has no effect when envvar LC_ALL='C'
  
  272. Export to SPSS (.sav) ('test_format_sav.R:25:9') - Changing language has no effect when envvar LC_ALL='C'
  
  273. Export to SPSS (.sav) ('test_format_sav.R:28:9') - Changing language has no effect when envvar LC_ALL='C'
  
  274. Export to SPSS (.sav) ('test_format_sav.R:29:9') - Changing language has no effect when envvar LC_ALL='C'
  
  275. (code run outside of `test_that()`) ('test_format_sav.R:2:1') - Changing language has no effect when envvar LC_ALL='C'
  
  276. Export to SPSS compressed (.zsav) ('test_format_sav.R:47:9') - Changing language has no effect when envvar LC_ALL='C'
  
  277. Export to SPSS compressed (.zsav) ('test_format_sav.R:48:9') - Changing language has no effect when envvar LC_ALL='C'
  
  278. Export to SPSS compressed (.zsav) ('test_format_sav.R:49:9') - Changing language has no effect when envvar LC_ALL='C'
  
  279. Export to SPSS compressed (.zsav) ('test_format_sav.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  280. Export to SPSS compressed (.zsav) ('test_format_sav.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  281. Export to SPSS compressed (.zsav) ('test_format_sav.R:54:9') - Changing language has no effect when envvar LC_ALL='C'
  
  282. Export to SPSS compressed (.zsav) ('test_format_sav.R:55:9') - Changing language has no effect when envvar LC_ALL='C'
  
  283. Export to SPSS compressed (.zsav) ('test_format_sav.R:58:9') - Changing language has no effect when envvar LC_ALL='C'
  
  284. Export to SPSS compressed (.zsav) ('test_format_sav.R:59:9') - Changing language has no effect when envvar LC_ALL='C'
  
  285. Export to SPSS compressed (.zsav) ('test_format_sav.R:62:9') - Changing language has no effect when envvar LC_ALL='C'
  
  286. Export to SPSS compressed (.zsav) ('test_format_sav.R:63:9') - Changing language has no effect when envvar LC_ALL='C'
  
  287. (code run outside of `test_that()`) ('test_format_sav.R:36:1') - Changing language has no effect when envvar LC_ALL='C'
  
  288. Import from Systat ('test_format_syd.R:4:5') - Changing language has no effect when envvar LC_ALL='C'
  
  289. (code run outside of `test_that()`) ('test_format_syd.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  290. Export to and import from TSV ('test_format_tsv.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  291. Export to and import from TSV ('test_format_tsv.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  292. (code run outside of `test_that()`) ('test_format_tsv.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  293. (code run outside of `test_that()`) ('test_format_tsv.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  294. Export to Excel (.xlsx) ('test_format_xls.R:4:9') - Changing language has no effect when envvar LC_ALL='C'
  
  295. Export to Excel (.xlsx) ('test_format_xls.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  296. Export to Excel (.xlsx) ('test_format_xls.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  297. Export to Excel (.xlsx) ('test_format_xls.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  298. Export to Excel (.xlsx) ('test_format_xls.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  299. (code run outside of `test_that()`) ('test_format_xls.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  300. (code run outside of `test_that()`) ('test_format_xls.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  301. (code run outside of `test_that()`) ('test_format_xls.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  302. (code run outside of `test_that()`) ('test_format_xls.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  303. Import from Excel (.xls) ('test_format_xls.R:48:5') - Changing language has no effect when envvar LC_ALL='C'
  
  304. Import from Excel (.xls) ('test_format_xls.R:49:5') - Changing language has no effect when envvar LC_ALL='C'
  
  305. Import from Excel (.xls) ('test_format_xls.R:50:5') - Changing language has no effect when envvar LC_ALL='C'
  
  306. (code run outside of `test_that()`) ('test_format_xls.R:47:1') - Changing language has no effect when envvar LC_ALL='C'
  
  307. Import from Excel (.xlsm) ('test_format_xls.R:54:5') - Changing language has no effect when envvar LC_ALL='C'
  
  308. Import from Excel (.xlsm) ('test_format_xls.R:55:5') - Changing language has no effect when envvar LC_ALL='C'
  
  309. Import from Excel (.xlsm) ('test_format_xls.R:56:5') - Changing language has no effect when envvar LC_ALL='C'
  
  310. (code run outside of `test_that()`) ('test_format_xls.R:53:1') - Changing language has no effect when envvar LC_ALL='C'
  
  311. (code run outside of `test_that()`) ('test_format_xls.R:74:1') - Changing language has no effect when envvar LC_ALL='C'
  
  312. Export to and import from XML ('test_format_xml.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  313. Export to and import from XML ('test_format_xml.R:19:9') - Changing language has no effect when envvar LC_ALL='C'
  
  314. (code run outside of `test_that()`) ('test_format_xml.R:15:1') - Changing language has no effect when envvar LC_ALL='C'
  
  315. (code run outside of `test_that()`) ('test_format_xml.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  316. Export to and import from YAML ('test_format_yml.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  317. Export to and import from YAML ('test_format_yml.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  318. (code run outside of `test_that()`) ('test_format_yml.R:3:1') - Changing language has no effect when envvar LC_ALL='C'
  
  319. (code run outside of `test_that()`) ('test_format_yml.R:13:1') - Changing language has no effect when envvar LC_ALL='C'
  
  320. Gather attrs from Stata ('test_gather_attrs.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  321. Gather attrs from Stata ('test_gather_attrs.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  322. Gather attrs from Stata ('test_gather_attrs.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  323. Gather attrs from Stata ('test_gather_attrs.R:10:9') - Changing language has no effect when envvar LC_ALL='C'
  
  324. Gather attrs from Stata ('test_gather_attrs.R:11:9') - Changing language has no effect when envvar LC_ALL='C'
  
  325. Gather attrs from Stata ('test_gather_attrs.R:12:9') - Changing language has no effect when envvar LC_ALL='C'
  
  326. Gather attrs from Stata ('test_gather_attrs.R:13:9') - Changing language has no effect when envvar LC_ALL='C'
  
  327. Gather attrs from Stata ('test_gather_attrs.R:14:9') - Changing language has no effect when envvar LC_ALL='C'
  
  328. Gather attrs from Stata ('test_gather_attrs.R:15:9') - Changing language has no effect when envvar LC_ALL='C'
  
  329. Gather attrs from Stata ('test_gather_attrs.R:16:9') - Changing language has no effect when envvar LC_ALL='C'
  
  330. (code run outside of `test_that()`) ('test_gather_attrs.R:6:5') - Changing language has no effect when envvar LC_ALL='C'
  
  331. Spread attrs from Stata ('test_gather_attrs.R:22:9') - Changing language has no effect when envvar LC_ALL='C'
  
  332. Spread attrs from Stata ('test_gather_attrs.R:23:9') - Changing language has no effect when envvar LC_ALL='C'
  
  333. Spread attrs from Stata ('test_gather_attrs.R:25:9') - Changing language has no effect when envvar LC_ALL='C'
  
  334. Spread attrs from Stata ('test_gather_attrs.R:26:9') - Changing language has no effect when envvar LC_ALL='C'
  
  335. Spread attrs from Stata ('test_gather_attrs.R:27:9') - Changing language has no effect when envvar LC_ALL='C'
  
  336. Spread attrs from Stata ('test_gather_attrs.R:28:9') - Changing language has no effect when envvar LC_ALL='C'
  
  337. (code run outside of `test_that()`) ('test_gather_attrs.R:19:5') - Changing language has no effect when envvar LC_ALL='C'
  
  338. Gather empty attributes ('test_gather_attrs.R:34:9') - Changing language has no effect when envvar LC_ALL='C'
  
  339. Gather empty attributes ('test_gather_attrs.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  340. Gather empty attributes ('test_gather_attrs.R:36:9') - Changing language has no effect when envvar LC_ALL='C'
  
  341. Gather empty attributes ('test_gather_attrs.R:37:9') - Changing language has no effect when envvar LC_ALL='C'
  
  342. (code run outside of `test_that()`) ('test_gather_attrs.R:31:5') - Changing language has no effect when envvar LC_ALL='C'
  
  343. (code run outside of `test_that()`) ('test_gather_attrs.R:40:5') - Changing language has no effect when envvar LC_ALL='C'
  
  344. (code run outside of `test_that()`) ('test_gather_attrs.R:44:5') - Changing language has no effect when envvar LC_ALL='C'
  
  345. (code run outside of `test_that()`) ('test_guess.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  346. (code run outside of `test_that()`) ('test_guess.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  347. Export without file specified ('test_guess.R:24:9') - Changing language has no effect when envvar LC_ALL='C'
  
  348. (code run outside of `test_that()`) ('test_guess.R:20:1') - Changing language has no effect when envvar LC_ALL='C'
  
  349. (code run outside of `test_that()`) ('test_guess.R:28:1') - Changing language has no effect when envvar LC_ALL='C'
  
  350. (code run outside of `test_that()`) ('test_identical.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  351. (code run outside of `test_that()`) ('test_identical.R:9:1') - Changing language has no effect when envvar LC_ALL='C'
  
  352. (code run outside of `test_that()`) ('test_identical.R:18:1') - Changing language has no effect when envvar LC_ALL='C'
  
  353. (code run outside of `test_that()`) ('test_identical.R:25:1') - Changing language has no effect when envvar LC_ALL='C'
  
  354. (code run outside of `test_that()`) ('test_identical.R:32:1') - Changing language has no effect when envvar LC_ALL='C'
  
  355. (code run outside of `test_that()`) ('test_identical.R:38:1') - Changing language has no effect when envvar LC_ALL='C'
  
  356. Data identical (optional arguments) ('test_identical.R:54:9') - Changing language has no effect when envvar LC_ALL='C'
  
  357. (code run outside of `test_that()`) ('test_identical.R:49:1') - Changing language has no effect when envvar LC_ALL='C'
  
  358. Data identical (import_list) ('test_import_list.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  359. Data identical (import_list) ('test_import_list.R:8:9') - Changing language has no effect when envvar LC_ALL='C'
  
  360. Data identical (import_list) ('test_import_list.R:9:9') - Changing language has no effect when envvar LC_ALL='C'
  
  361. (code run outside of `test_that()`) ('test_import_list.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  362. Import multi-object .Rdata in import_list() ('test_import_list.R:17:9') - Changing language has no effect when envvar LC_ALL='C'
  
  363. Import multi-object .Rdata in import_list() ('test_import_list.R:18:9') - Changing language has no effect when envvar LC_ALL='C'
  
  364. (code run outside of `test_that()`) ('test_import_list.R:13:1') - Changing language has no effect when envvar LC_ALL='C'
  
  365. Import multiple HTML tables in import_list() ('test_import_list.R:24:5') - Changing language has no effect when envvar LC_ALL='C'
  
  366. Import multiple HTML tables in import_list() ('test_import_list.R:25:5') - Changing language has no effect when envvar LC_ALL='C'
  
  367. Import multiple HTML tables in import_list() ('test_import_list.R:26:5') - Changing language has no effect when envvar LC_ALL='C'
  
  368. Import multiple HTML tables in import_list() ('test_import_list.R:27:5') - Changing language has no effect when envvar LC_ALL='C'
  
  369. (code run outside of `test_that()`) ('test_import_list.R:22:1') - Changing language has no effect when envvar LC_ALL='C'
  
  370. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:35:9') - Changing language has no effect when envvar LC_ALL='C'
  
  371. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:36:9') - Changing language has no effect when envvar LC_ALL='C'
  
  372. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:37:9') - Changing language has no effect when envvar LC_ALL='C'
  
  373. Import multiple HTML tables in import_list() but with htm #350 ('test_import_list.R:38:9') - Changing language has no effect when envvar LC_ALL='C'
  
  374. (code run outside of `test_that()`) ('test_import_list.R:30:1') - Changing language has no effect when envvar LC_ALL='C'
  
  375. import_list() preserves 'which' names when specified ('test_import_list.R:45:9') - Changing language has no effect when envvar LC_ALL='C'
  
  376. import_list() preserves 'which' names when specified ('test_import_list.R:46:9') - Changing language has no effect when envvar LC_ALL='C'
  
  377. import_list() preserves 'which' names when specified ('test_import_list.R:47:9') - Changing language has no effect when envvar LC_ALL='C'
  
  378. import_list() preserves 'which' names when specified ('test_import_list.R:48:9') - Changing language has no effect when envvar LC_ALL='C'
  
  379. import_list() preserves 'which' names when specified ('test_import_list.R:49:9') - Changing language has no effect when envvar LC_ALL='C'
  
  380. import_list() preserves 'which' names when specified ('test_import_list.R:50:9') - Changing language has no effect when envvar LC_ALL='C'
  
  381. import_list() preserves 'which' names when specified ('test_import_list.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  382. import_list() preserves 'which' names when specified ('test_import_list.R:52:9') - Changing language has no effect when envvar LC_ALL='C'
  
  383. import_list() preserves 'which' names when specified ('test_import_list.R:53:9') - Changing language has no effect when envvar LC_ALL='C'
  
  384. (code run outside of `test_that()`) ('test_import_list.R:42:1') - Changing language has no effect when envvar LC_ALL='C'
  
  385. (code run outside of `test_that()`) ('test_import_list.R:57:1') - Changing language has no effect when envvar LC_ALL='C'
  
  386. Import single file via import_list() ('test_import_list.R:77:9') - Changing language has no effect when envvar LC_ALL='C'
  
  387. (code run outside of `test_that()`) ('test_import_list.R:74:1') - Changing language has no effect when envvar LC_ALL='C'
  
  388. Import single file from zip via import_list() ('test_import_list.R:84:9') - Changing language has no effect when envvar LC_ALL='C'
  
  389. Import single file from zip via import_list() ('test_import_list.R:85:9') - Changing language has no effect when envvar LC_ALL='C'
  
  390. Import single file from zip via import_list() ('test_import_list.R:87:9') - Changing language has no effect when envvar LC_ALL='C'
  
  391. (code run outside of `test_that()`) ('test_import_list.R:81:1') - Changing language has no effect when envvar LC_ALL='C'
  
  392. Import multiple files from zip via import_list() ('test_import_list.R:96:9') - Changing language has no effect when envvar LC_ALL='C'
  
  393. Import multiple files from zip via import_list() ('test_import_list.R:98:9') - Changing language has no effect when envvar LC_ALL='C'
  
  394. Import multiple files from zip via import_list() ('test_import_list.R:99:9') - Changing language has no effect when envvar LC_ALL='C'
  
  395. Import multiple files from zip via import_list() ('test_import_list.R:100:9') - Changing language has no effect when envvar LC_ALL='C'
  
  396. (code run outside of `test_that()`) ('test_import_list.R:91:1') - Changing language has no effect when envvar LC_ALL='C'
  
  397. Import multiple files from zip via import_list() ('test_import_list.R:108:9') - invalid uid value replaced by that for user 'nobody'
  
  398. Import multiple files from zip via import_list() ('test_import_list.R:110:9') - Changing language has no effect when envvar LC_ALL='C'
  
  399. Import multiple files from zip via import_list() ('test_import_list.R:112:9') - Changing language has no effect when envvar LC_ALL='C'
  
  400. Import multiple files from zip via import_list() ('test_import_list.R:113:9') - Changing language has no effect when envvar LC_ALL='C'
  
  401. Import multiple files from zip via import_list() ('test_import_list.R:114:9') - Changing language has no effect when envvar LC_ALL='C'
  
  402. (code run outside of `test_that()`) ('test_import_list.R:104:1') - Changing language has no effect when envvar LC_ALL='C'
  
  403. Using setclass in import_list() ('test_import_list.R:122:9') - Changing language has no effect when envvar LC_ALL='C'
  
  404. Using setclass in import_list() ('test_import_list.R:124:9') - Changing language has no effect when envvar LC_ALL='C'
  
  405. (code run outside of `test_that()`) ('test_import_list.R:118:1') - Changing language has no effect when envvar LC_ALL='C'
  
  406. (code run outside of `test_that()`) ('test_import_list.R:128:1') - Changing language has no effect when envvar LC_ALL='C'
  
  407. (code run outside of `test_that()`) ('test_import_list.R:154:1') - Changing language has no effect when envvar LC_ALL='C'
  
  408. (code run outside of `test_that()`) ('test_import_list.R:166:1') - Changing language has no effect when envvar LC_ALL='C'
  
  409. (code run outside of `test_that()`) ('test_import_list.R:183:1') - Changing language has no effect when envvar LC_ALL='C'
  
  410. (code run outside of `test_that()`) ('test_import_list.R:195:1') - Changing language has no effect when envvar LC_ALL='C'
  
  411. Informative message when files are not found #389 ('test_import_list.R:214:9') - Changing language has no effect when envvar LC_ALL='C'
  
  412. Informative message when files are not found #389 ('test_import_list.R:215:9') - Changing language has no effect when envvar LC_ALL='C'
  
  413. (code run outside of `test_that()`) ('test_import_list.R:211:1') - Changing language has no effect when envvar LC_ALL='C'
  
  414. Missing files and rbind ('test_import_list.R:223:9') - Changing language has no effect when envvar LC_ALL='C'
  
  415. Missing files and rbind ('test_import_list.R:224:9') - Changing language has no effect when envvar LC_ALL='C'
  
  416. Missing files and rbind ('test_import_list.R:225:9') - Changing language has no effect when envvar LC_ALL='C'
  
  417. Missing files and rbind ('test_import_list.R:227:9') - Changing language has no effect when envvar LC_ALL='C'
  
  418. (code run outside of `test_that()`) ('test_import_list.R:220:1') - Changing language has no effect when envvar LC_ALL='C'
  
  419. (code run outside of `test_that()`) ('test_mapping.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  420. (code run outside of `test_that()`) ('test_mapping.R:16:1') - Changing language has no effect when envvar LC_ALL='C'
  
  421. (code run outside of `test_that()`) ('test_mapping.R:23:1') - Changing language has no effect when envvar LC_ALL='C'
  
  422. Export matrix to and import from CSV ('test_matrix.R:5:9') - Changing language has no effect when envvar LC_ALL='C'
  
  423. Export matrix to and import from CSV ('test_matrix.R:6:9') - Changing language has no effect when envvar LC_ALL='C'
  
  424. Export matrix to and import from CSV ('test_matrix.R:7:9') - Changing language has no effect when envvar LC_ALL='C'
  
  425. (code run outside of `test_that()`) ('test_matrix.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  426. Set object class ('test_set_class.R:7:5') - Changing language has no effect when envvar LC_ALL='C'
  
  427. Set object class ('test_set_class.R:8:5') - Changing language has no effect when envvar LC_ALL='C'
  
  428. Set object class ('test_set_class.R:9:5') - Changing language has no effect when envvar LC_ALL='C'
  
  429. Set object class ('test_set_class.R:10:5') - Changing language has no effect when envvar LC_ALL='C'
  
  430. Set object class ('test_set_class.R:11:5') - Changing language has no effect when envvar LC_ALL='C'
  
  431. (code run outside of `test_that()`) ('test_set_class.R:4:1') - Changing language has no effect when envvar LC_ALL='C'
  
  432. Set object class as tibble ('test_set_class.R:17:5') - Changing language has no effect when envvar LC_ALL='C'
  
  433. Set object class as tibble ('test_set_class.R:18:5') - Changing language has no effect when envvar LC_ALL='C'
  
  434. Set object class as tibble ('test_set_class.R:19:5') - Changing language has no effect when envvar LC_ALL='C'
  
  435. (code run outside of `test_that()`) ('test_set_class.R:14:1') - Changing language has no effect when envvar LC_ALL='C'
  
  436. Set object class as data.table ('test_set_class.R:23:5') - Changing language has no effect when envvar LC_ALL='C'
  
  437. Set object class as data.table ('test_set_class.R:26:9') - Changing language has no effect when envvar LC_ALL='C'
  
  438. Set object class as data.table ('test_set_class.R:27:9') - Changing language has no effect when envvar LC_ALL='C'
  
  439. (code run outside of `test_that()`) ('test_set_class.R:22:1') - Changing language has no effect when envvar LC_ALL='C'
  
  440. Set object class as arrow table ('test_set_class.R:35:5') - Changing language has no effect when envvar LC_ALL='C'
  
  441. Set object class as arrow table ('test_set_class.R:36:5') - Changing language has no effect when envvar LC_ALL='C'
  
  442. Set object class as arrow table ('test_set_class.R:37:5') - Changing language has no effect when envvar LC_ALL='C'
  
  443. Set object class as arrow table ('test_set_class.R:40:9') - Changing language has no effect when envvar LC_ALL='C'
  
  444. Set object class as arrow table ('test_set_class.R:41:9') - Changing language has no effect when envvar LC_ALL='C'
  
  445. (code run outside of `test_that()`) ('test_set_class.R:31:1') - Changing language has no effect when envvar LC_ALL='C'
  
  446. ArrowTabular can be exported ('test_set_class.R:51:9') - Changing language has no effect when envvar LC_ALL='C'
  
  447. (code run outside of `test_that()`) ('test_set_class.R:45:1') - Changing language has no effect when envvar LC_ALL='C'
  
  448. (code run outside of `test_that()`) ('test_set_class.R:55:1') - Changing language has no effect when envvar LC_ALL='C'
  
  449. (code run outside of `test_that()`) ('test_suggestions.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  450. (code run outside of `test_that()`) ('test_suggestions.R:12:1') - Changing language has no effect when envvar LC_ALL='C'
  
  451. (code run outside of `test_that()`) ('test_suggestions.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  452. (code run outside of `test_that()`) ('test_trust.R:1:1') - Changing language has no effect when envvar LC_ALL='C'
  
  453. (code run outside of `test_that()`) ('test_trust.R:11:1') - Changing language has no effect when envvar LC_ALL='C'
  
  454. (code run outside of `test_that()`) ('test_trust.R:21:1') - Changing language has no effect when envvar LC_ALL='C'
  
  455. (code run outside of `test_that()`) ('test_trust.R:31:1') - Changing language has no effect when envvar LC_ALL='C'
  
  456. (code run outside of `test_that()`) ('test_trust.R:39:1') - Changing language has no effect when envvar LC_ALL='C'
  
  457. (code run outside of `test_that()`) ('test_trust.R:55:1') - Changing language has no effect when envvar LC_ALL='C'
  
  458. (code run outside of `test_that()`) ('test_trust.R:63:1') - Changing language has no effect when envvar LC_ALL='C'
  
  459. (code run outside of `test_that()`) ('test_trust.R:73:1') - Changing language has no effect when envvar LC_ALL='C'
  
  == Failed ======================================================================
  -- 1. Error ('test_compress.R:53:13'): Export to compressed (gz, bz2) / import -
  Error in `regexpr(as.character(pattern), text, ignore.case, perl, fixed, 
      useBytes)`: NA in coercion to boolean
  Backtrace:
       x
    1. \-withr::with_tempfile(...) at test_compress.R:52:9
    2.   \-base::eval(substitute(code), envir = env)
    3.     \-base::eval(substitute(code), envir = env)
    4.       \-rio::export(iris, iris_path) at test_compress.R:53:13
    5.         \-rio:::compress_out(cfile = cfile, filename = file, type = compress)
    6.           \-rio:::.compress_rutils(filename, cfile, ext = ext)
    7.             +-R.utils::compressFile(...)
    8.             \-R.utils::compressFile.default(...)
    9.               +-R.utils::popTemporaryFile(destnameT)
   10.               \-R.utils::popTemporaryFile.default(destnameT)
   11.                 \-base::regexpr(pattern, "", pathnameT)
  
  -- 2. Error ('test_compress.R:82:13'): Prevent the reuse of `which` for zip and 
  Error in `regexpr(as.character(pattern), text, ignore.case, perl, fixed, 
      useBytes)`: NA in coercion to boolean
  Backtrace:
       x
    1. \-withr::with_tempfile(...) at test_compress.R:81:9
    2.   \-base::eval(substitute(code), envir = env)
    3.     \-base::eval(substitute(code), envir = env)
    4.       \-rio::export(list(some_iris = head(iris)), data_path) at test_compress.R:82:13
    5.         \-rio:::compress_out(cfile = cfile, filename = file, type = compress)
    6.           \-rio:::.compress_rutils(filename, cfile, ext = ext)
    7.             +-R.utils::compressFile(...)
    8.             \-R.utils::compressFile.default(...)
    9.               +-R.utils::popTemporaryFile(destnameT)
   10.               \-R.utils::popTemporaryFile.default(destnameT)
   11.                 \-base::regexpr(pattern, "", pathnameT)
  
  -- 3. Failure ('test_export_corner_cases.R:24:9'): export to nonexisting directo
  `export(iris, file.path(output_dir, "iris.csv.gz"))` threw an error.
  Message: NA in coercion to boolean
  Class:   simpleError/error/condition
  Backtrace:
       x
    1. +-withr::with_tempdir(...) at test_export_corner_cases.R:21:5
    2. | \-withr::with_dir(tmp, code)
    3. |   \-base::force(code)
    4. +-testthat::expect_error(...) at test_export_corner_cases.R:24:9
    5. | \-testthat:::quasi_capture(...)
    6. |   +-testthat (local) .capture(...)
    7. |   | \-base::withCallingHandlers(...)
    8. |   \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
    9. \-rio::export(iris, file.path(output_dir, "iris.csv.gz"))
   10.   \-rio:::compress_out(cfile = cfile, filename = file, type = compress)
   11.     \-rio:::.compress_rutils(filename, cfile, ext = ext)
   12.       +-R.utils::compressFile(...)
   13.       \-R.utils::compressFile.default(...)
   14.         +-R.utils::popTemporaryFile(destnameT)
   15.         \-R.utils::popTemporaryFile.default(destnameT)
   16.           \-base::regexpr(pattern, "", pathnameT)
  
  -- 4. Failure ('test_export_corner_cases.R:25:9'): export to nonexisting directo
  file.exists(file.path(output_dir, "iris.csv.gz")) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  Backtrace:
      x
   1. +-withr::with_tempdir(...) at test_export_corner_cases.R:21:5
   2. | \-withr::with_dir(tmp, code)
   3. |   \-base::force(code)
   4. \-testthat::expect_true(file.exists(file.path(output_dir, "iris.csv.gz"))) at test_export_corner_cases.R:25:9
  
  -- 5. Failure ('test_format_yml.R:19:9'): utf-8 --------------------------------
  `content` not equal to y$col.
  6/7 mismatches
  x[2]: "\u010d"
  y[2]: "<U+010D>"
  
  x[3]: "\u0161"
  y[3]: "<U+0161>"
  
  x[4]: "\u00c4"
  y[4]: "<U+00C4>"
  
  x[5]: "\u5b57"
  y[5]: "<U+5B57>"
  
  x[6]: "\u30a2"
  y[6]: "<U+30A2>"
  Backtrace:
      x
   1. \-withr::with_tempfile(...) at test_format_yml.R:15:5
   2.   \-base::eval(substitute(code), envir = env)
   3.     \-base::eval(substitute(code), envir = env)
   4.       \-testthat::expect_equal(content, y$col) at test_format_yml.R:19:9
  
  -- 6. Error ('test_import_list.R:133:9'): Object names are preserved by import_l
  Error: Suggested package `readODS` is not available. Please install it individually or use `install_formats()`
  Backtrace:
      x
   1. +-withr::with_tempdir(...) at test_import_list.R:129:5
   2. | \-withr::with_dir(tmp, code)
   3. |   \-base::force(code)
   4. \-rio::export(...) at test_import_list.R:133:9
   5.   +-rio:::.export(file = file, x = x, ...)
   6.   \-rio:::.export.rio_ods(file = file, x = x, ...)
   7.     \-rio:::.check_pkg_availability("readODS")
  
  == DONE ========================================================================
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  '/tmp/th798/26735458/R-release/1231/rio.Rcheck/00check.log'
for details.

[1] "2026-01-30 03:52:45 MST"
Warning message:
In install.packages(dt.tar.gz, repos = NULL) :
  installation of package '/scratch/th798/data.table-revdeps/2026-01-30/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz' had non-zero exit status
> system(paste(c("diff -u", Rcheck.list), collapse=" "))
--- R_version_4.5.2_2025-10-31/release_1.18.2.1.Rcheck/00check.log	2026-01-30 03:51:14.979823701 -0700
+++ R_version_4.5.2_2025-10-31/master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.Rcheck/00check.log	2026-01-30 03:52:45.431060890 -0700
@@ -66,11 +66,11 @@
   characterize()/factorize(): W.WW.WW.WW.WW.W.W
   check_file: ..................W.....W....W.....W....W
   compress: 
-  Compressed files: W.W.W.W.W.W.W  adding: file30e14377f2c4a.csv (deflated 78%)
+  Compressed files: W.W.W.W.W.W.W  adding: file311d146e935128.csv (deflated 78%)
   W.W.W.W.WW.W.W.W.WW.W.W.W.W.WW.W.W.W.W.WW.W.W.W.WW.W.W.W.W.W  adding: mtcars1.csv (deflated 48%)
     adding: mtcars2.csv (deflated 50%)
     adding: mtcars3.csv (deflated 47%)
-  W...W.W.W1W  adding: file30e1435fd2b265.xlsx (deflated 11%)
+  W...W.W.W1W  adding: file311d141f712e8e.xlsx (deflated 10%)
   ...W../usr/bin/gtar: NA: Not found in archive
   /usr/bin/gtar: Exiting with failure status due to previous errors
   .W../usr/bin/gtar: NA: Not found in archive
@@ -81,7 +81,7 @@
   /usr/bin/gtar: Exiting with failure status due to previous errors
   .W../usr/bin/gtar: NA: Not found in archive
   /usr/bin/gtar: Exiting with failure status due to previous errors
-  .2W........WSW  adding: tmp/th798/26735458/RtmpTDBwwD/file30e1431867f1b4.csv (stored 0%)
+  .2W........WSW  adding: tmp/th798/26735458/RtmpBOwjaj/file311d1418906b33.csv (stored 0%)
   .W.W.W.W  adding: file_1.csv (deflated 48%)
     adding: file_2.csv (deflated 50%)
     adding: file_3.csv (deflated 47%)
@@ -137,7 +137,7 @@
   gather_attrs: W.W.W.W.W.W.W.W.W.W.WW.W.W.W.W.W.WW.W.W.W.W.W.W
   guess: .....W........WW.W..W
   identical: ...W....W.W..W.W....W..W.W
-  import_list: .W.W.W.WW.W.WW.W.W.W.WW.W.W.W.WW.W.W.W.W.W.W.W.W.WSWW.W  adding: file30e14334118ae3.csv (deflated 58%)
+  import_list: .W.W.W.WW.W.WW.W.W.W.WW.W.W.W.WW.W.W.W.W.W.W.W.W.WSWW.W  adding: file311d14f0c3299.csv (deflated 58%)
   W.W.W.W  adding: mtcars1.csv (deflated 48%)
     adding: mtcars2.csv (deflated 50%)
     adding: mtcars3.csv (deflated 47%)
> library(data.table, lib.loc=R.home("library"))
> (sig.diff.dt <- myDiff(Rvers))
Key: <checking>
Empty data.table (0 rows and 3 cols): checking,master,release
> 
> ## If there are significant differences, use git bisect to find when
> ## they started.
> if(nrow(sig.diff.dt)){
+   dt.git <- file.path(task.dir, "data.table.git")
+   unlink(dt.git, recursive=TRUE, force=TRUE)
+   system(paste("cd ~/R/data.table && git fetch --tags"))
+   system(paste("git clone ~/R/data.table", dt.git))
+   release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]])
+   rev.parse.cmd <- paste(
+     "cd", dt.git, "&& git rev-parse master")
+   master.sha <- system(rev.parse.cmd, intern=TRUE)
+   merge.base.cmd <- paste(
+     "cd", dt.git, "&& git merge-base master", release.tag)
+   merge.base.sha <- system(merge.base.cmd, intern=TRUE)
+   old.sha <- merge.base.sha
+   run_R <- file.path(proj.dir, "install_dt_then_check_dep.R")
+   sig.diff.dt[, first.bad.commit := NA_character_]
+   sig.diff.dt[, comments := NA_character_]
+   for(diff.i in 1:nrow(sig.diff.dt)){
+     sig.diff.row <- sig.diff.dt[diff.i]
+     bisect.cmd <- paste(
+       "cd", dt.git, "&&",
+       "git bisect start &&",
+       "git bisect old", old.sha, "&&",
+       "git bisect new master &&",
+       "git bisect run",
+       R.home('bin/Rscript'),
+       run_R,
+       shQuote(sig.diff.row$checking),
+       sig.diff.row$release,
+       rev.dep.release.tar.gz,
+       release.tag)
+     print(bisect.cmd)
+     bisect.out <- system(bisect.cmd, intern=TRUE)
+     cat(bisect.out,sep="\n")
+     if(is.null(attr(bisect.out,"status"))){
+       first.bad.sha <- nc::capture_all_str(
+         bisect.out,
+         sha="[0-9a-f]+",
+         " is the first new commit")$sha
+       parent.cmd <- paste(
+         "cd ~/R/data.table && git log --pretty=%P -n 1",
+         first.bad.sha)
+       parent.sha <- system(parent.cmd, intern=TRUE)
+       sig.diff.dt[diff.i, first.bad.commit := first.bad.sha]
+       parent.msg <- paste0("parent=", parent.sha)
+       this.comment <- if(parent.sha==old.sha){
+         paste(parent.msg, "same as git bisect old")
+       }else if(first.bad.sha==master.sha){
+         paste("same as git bisect new=master,", parent.msg)
+       }else{
+         parent.msg
+       }
+       sig.diff.dt[diff.i, comments := this.comment]
+     }
+   }
+   ## add CRAN column.
+   sig.diff.dt[, CRAN := {
+     flavor <- get_flavor(Rvers)
+     details <- data.table(flavor=unique(flavor))[, {
+       base <- "https://www.r-project.org/nosvn/R.check/"
+       u <- paste0(base, flavor, "/", rev.dep, "-00check.txt")
+       check.txt <- tempfile()
+       tryCatch({
+         download.file(u, check.txt, quiet=TRUE)
+       }, error=function(e){
+         NULL
+       })
+       check.lines <- if(file.exists(check.txt)){
+         readLines(check.txt,encoding="UTF-8")
+       }else{
+         ""
+       }
+       repl.lines <- gsub("[\u2018\u2019]", "'", check.lines)
+       ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C.
+       myStatus(line.vec=repl.lines)
+     }, by=flavor]
+     select.dt <- data.table(flavor, checking)
+     details[select.dt, msg, on=.(flavor, checking)]
+   }]
+   dir.create(file.path(job.dir, Rvers))
+   diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv")
+   data.table::fwrite(sig.diff.dt, diffs.csv)
+   print(sig.diff.dt)
+ }
>