Note: the module "R" cannot be unloaded because it was not loaded. WARNING: ignoring environment value of R_HOME R Under development (unstable) (2026-02-02 r89367) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2026-02-02/deps.csv", task.str = "1055", release = "/scratch/th798/data.table-revdeps/2026-02-02/data.table_release_1.18.2.1.tar.gz", master = "/scratch/th798/data.table-revdeps/2026-02-02/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/26770135/R-devel/1055" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/26770135/R-devel/1055/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "polmineR" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/26770135/R-devel/1055/library" [2] "/projects/genomic-ml/R/R-devel/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2026-02-02 13:53:52 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/26770135/R-devel/1055/library' (as 'lib' is unspecified) also installing the dependencies 'Rcpp', 'htmlwidgets', 'promises', 'xfun', 'yaml', 'commonmark', 'httpuv', 'later', 'janeaustenr', 'tokenizers', 'tm', 'DT', 'RcppCWB', 'knitr', 'rmarkdown', 'highlight', 'shiny', 'shinythemes', 'shinyjs', 'miniUI', 'rhandsontable', 'tidytext', 'covr', 'protolite' trying URL 'http://cloud.r-project.org/src/contrib/Rcpp_1.1.1.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/htmlwidgets_1.6.4.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/promises_1.5.0.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/xfun_0.56.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/yaml_2.3.12.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/commonmark_2.0.0.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/httpuv_1.6.16.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/later_1.4.5.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/janeaustenr_1.0.0.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/tokenizers_0.3.0.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/tm_0.7-17.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/DT_0.34.0.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/RcppCWB_0.6.10.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/knitr_1.51.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/rmarkdown_2.30.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/highlight_0.5.2.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/shiny_1.12.1.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/shinythemes_1.2.0.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/shinyjs_2.1.1.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/miniUI_0.1.2.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/rhandsontable_0.3.8.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/tidytext_0.4.3.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/covr_3.6.5.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/protolite_2.3.1.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/polmineR_0.8.9.tar.gz' * installing *source* package 'Rcpp' ... ** this is package 'Rcpp' version '1.1.1' ** package 'Rcpp' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c api.cpp -o api.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c attributes.cpp -o attributes.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c barrier.cpp -o barrier.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c date.cpp -o date.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c module.cpp -o module.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I../inst/include/ -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rcpp_init.cpp -o rcpp_init.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) * installing *source* package 'xfun' ... ** this is package 'xfun' version '0.56' ** package 'xfun' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c base64.c -o base64.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rand_lcg.c -o rand_lcg.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o xfun.so base64.o init.o rand_lcg.o installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-xfun/00new/xfun/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xfun) * installing *source* package 'yaml' ... ** this is package 'yaml' version '2.3.12' ** package 'yaml' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c api.c -o api.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dumper.c -o dumper.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c emitter.c -o emitter.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c implicit.c -o implicit.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c loader.c -o loader.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c parser.c -o parser.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c r_emit.c -o r_emit.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c r_ext.c -o r_ext.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c r_parse.c -o r_parse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reader.c -o reader.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c scanner.c -o scanner.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c writer.c -o writer.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-yaml/00new/yaml/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yaml) * installing *source* package 'commonmark' ... ** this is package 'commonmark' version '2.0.0' ** package 'commonmark' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c extensions.c -o extensions.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrapper.c -o wrapper.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/cmark.c -o cmark/cmark.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/node.c -o cmark/node.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/iterator.c -o cmark/iterator.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/blocks.c -o cmark/blocks.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/inlines.c -o cmark/inlines.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/scanners.c -o cmark/scanners.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/utf8.c -o cmark/utf8.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/buffer.c -o cmark/buffer.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/references.c -o cmark/references.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/render.c -o cmark/render.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/man.c -o cmark/man.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/xml.c -o cmark/xml.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/html.c -o cmark/html.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/commonmark.c -o cmark/commonmark.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/latex.c -o cmark/latex.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/arena.c -o cmark/arena.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/linked_list.c -o cmark/linked_list.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/plugin.c -o cmark/plugin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/registry.c -o cmark/registry.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/syntax_extension.c -o cmark/syntax_extension.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/plaintext.c -o cmark/plaintext.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/footnotes.c -o cmark/footnotes.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cmark/map.c -o cmark/map.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c extensions/autolink.c -o extensions/autolink.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c extensions/core-extensions.c -o extensions/core-extensions.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c extensions/ext_scanners.c -o extensions/ext_scanners.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c extensions/strikethrough.c -o extensions/strikethrough.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c extensions/table.c -o extensions/table.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c extensions/tagfilter.c -o extensions/tagfilter.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c extensions/tasklist.c -o extensions/tasklist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-commonmark/00new/commonmark/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (commonmark) * installing *source* package 'janeaustenr' ... ** this is package 'janeaustenr' version '1.0.0' ** package 'janeaustenr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (janeaustenr) * installing *source* package 'highlight' ... ** this is package 'highlight' version '0.5.2' ** package 'highlight' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ASBeautifier.cpp -o ASBeautifier.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ASEnhancer.cpp -o ASEnhancer.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ASFormatter.cpp -o ASFormatter.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ASResource.cpp -o ASResource.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ASStreamIterator.cpp -o ASStreamIterator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c Matcher.cpp -o Matcher.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c Pattern.cpp -o Pattern.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ansigenerator.cpp -o ansigenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bbcodegenerator.cpp -o bbcodegenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c codegenerator.cpp -o codegenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c configurationreader.cpp -o configurationreader.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ctagsreader.cpp -o ctagsreader.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c datadir.cpp -o datadir.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c documentstyle.cpp -o documentstyle.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c elementstyle.cpp -o elementstyle.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c highlight_wrapper.cpp -o highlight_wrapper.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c htmlgenerator.cpp -o htmlgenerator.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c languagedefinition.cpp -o languagedefinition.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c latexgenerator.cpp -o latexgenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c platform_fs.cpp -o platform_fs.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c preformatter.cpp -o preformatter.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c render.cpp -o render.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rtfgenerator.cpp -o rtfgenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c stringtools.cpp -o stringtools.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c stylecolour.cpp -o stylecolour.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c svggenerator.cpp -o svggenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c texgenerator.cpp -o texgenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c xhtmlgenerator.cpp -o xhtmlgenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c xmlgenerator.cpp -o xmlgenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c xterm256generator.cpp -o xterm256generator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o highlight.so ASBeautifier.o ASEnhancer.o ASFormatter.o ASResource.o ASStreamIterator.o Matcher.o Pattern.o ansigenerator.o bbcodegenerator.o codegenerator.o configurationreader.o ctagsreader.o datadir.o documentstyle.o elementstyle.o highlight_wrapper.o htmlgenerator.o init.o languagedefinition.o latexgenerator.o platform_fs.o preformatter.o render.o rtfgenerator.o stringtools.o stylecolour.o svggenerator.o texgenerator.o xhtmlgenerator.o xmlgenerator.o xterm256generator.o installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-highlight/00new/highlight/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (highlight) * installing *source* package 'later' ... ** this is package 'later' version '1.4.5' ** package 'later' successfully unpacked and MD5 sums checked ** using staged installation Running configure script -latomic linker flag not needed. ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o In file included from /tmp/th798/26770135/R-devel/1055/library/Rcpp/include/RcppCommon.h:29, from /tmp/th798/26770135/R-devel/1055/library/Rcpp/include/Rcpp.h:27, from RcppExports.cpp:5: /tmp/th798/26770135/R-devel/1055/library/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: '#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410' 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c callback_registry.cpp -o callback_registry.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c debug.cpp -o debug.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fd.cpp -o fd.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c later.cpp -o later.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c later_posix.cpp -o later_posix.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c later_win32.cpp -o later_win32.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c timer_posix.cpp -o timer_posix.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c timestamp_unix.cpp -o timestamp_unix.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c timestamp_win32.cpp -o timestamp_win32.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c tinycthread.c -o tinycthread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wref.c -o wref.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o later.so RcppExports.o callback_registry.o debug.o fd.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o wref.o -pthread installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-later/00new/later/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (later) * installing *source* package 'tokenizers' ... ** this is package 'tokenizers' version '0.3.0' ** package 'tokenizers' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shingle_ngrams.cpp -o shingle_ngrams.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c skip_ngrams.cpp -o skip_ngrams.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o tokenizers.so RcppExports.o shingle_ngrams.o skip_ngrams.o installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-tokenizers/00new/tokenizers/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tokenizers) * installing *source* package 'tm' ... ** this is package 'tm' version '0.7-17' ** package 'tm' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c copy.c -o copy.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c remove.c -o remove.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c scan.c -o scan.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c tdm.cpp -o tdm.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I'/projects/genomic-ml/R/R-devel/library/BH/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c tokenizer.cpp -o tokenizer.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o tm.so RcppExports.o copy.o init.o remove.o scan.o tdm.o tokenizer.o installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-tm/00new/tm/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tm) * installing *source* package 'RcppCWB' ... ** this is package 'RcppCWB' version '0.6.10' ** package 'RcppCWB' successfully unpacked and MD5 sums checked ** using staged installation * operating system detected for CWB configuration: Linux * Linux distribution ID: "rhel" (unsupported, adapting the configuration may be necessary) * architecture: x86_64 ... using config 'linux-64' * using CWB platform configuration file: linux-64 * adapt CWB configuration file to use compiler: /packages/gcc/12.2.0-nnbserq/bin/gcc sed: -e expression #1, char 54: unknown option to `s' * using pkg-config to check whether glib-2.0 is available ... yes * using pkg-config to get linker flags for glib-2.0: -L/home/th798/.conda/envs/emacs1/lib -lglib-2.0 * check whether pcre2 is available ... yes (version: 10.32) * checking whether pcre2test is available ... no * using pcre2-config to get libdirs for pcre2 (8bit): -lpcre2-8 * using pcre2-config to get cflags for pcre2: * using build directory: /tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB ** libs using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/CQi -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/CQi -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c addons.cpp -o addons.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/CQi -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cl.cpp -o cl.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/CQi -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cqp.cpp -o cqp.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl -I/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/CQi -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.cpp -o utils.o cd cwb; R_PACKAGE_SOURCE=/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb PKG_CONFIG_PATH=/home/th798/.conda/envs/emacs1/lib/pkgconfig:/home/th798/lib/pkgconfig:/home/th798/lib64/pkgconfig make clean make[1]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found for i in cl cqp ; do if [ -f "$i/Makefile" ]; then cd $i; make clean; cd ..; fi; done; make[2]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found rm -f *.o libcl.a registry.output *~ make[2]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl' make[2]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found rm -f cqp cqpcl cqpserver *.o ../CQi/*.o parser.output *~ ../CQi/*~ # TODO what is "parser.output" ? make[2]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp' rm -f *~ config/*/*~ CQi/*~ CQi/*.o technical/*~ TAGS rm -f -rf build make[1]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb PKG_CONFIG_PATH=/home/th798/.conda/envs/emacs1/lib/pkgconfig:/home/th798/lib/pkgconfig:/home/th798/lib64/pkgconfig make depend make[1]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found for i in cl cqp ; do cd $i; make depend.mk; cd ..; done; make[2]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found make[2]: 'depend.mk' is up to date. make[2]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl' make[2]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found make[2]: 'depend.mk' is up to date. make[2]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp' make[1]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb PKG_CONFIG_PATH=/home/th798/.conda/envs/emacs1/lib/pkgconfig:/home/th798/lib/pkgconfig:/home/th798/lib64/pkgconfig make cl make[1]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found --------------------------------- BUILDING CORPUS LIBRARY (CL) cd cl; make make[2]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o globals.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include globals.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o macros.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include macros.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ui-helpers.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ui-helpers.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o list.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include list.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o lexhash.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include lexhash.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ngram-hash.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ngram-hash.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o bitfields.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include bitfields.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o storage.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include storage.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o fileutils.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include fileutils.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o special-chars.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include special-chars.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o regopt.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include regopt.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o corpus.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include corpus.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o attributes.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include attributes.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o makecomps.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include makecomps.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o registry.tab.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include registry.tab.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o lex.creg.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include lex.creg.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o cdaccess.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include cdaccess.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o bitio.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include bitio.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o endian.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include endian.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o compression.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include compression.c rm -f libcl.a ar cqs libcl.a globals.o macros.o ui-helpers.o list.o lexhash.o ngram-hash.o bitfields.o storage.o fileutils.o special-chars.o regopt.o corpus.o attributes.o makecomps.o registry.tab.o lex.creg.o cdaccess.o bitio.o endian.o compression.o /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o dl_stub.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include dl_stub.c make[2]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl' make[1]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb PKG_CONFIG_PATH=/home/th798/.conda/envs/emacs1/lib/pkgconfig:/home/th798/lib/pkgconfig:/home/th798/lib64/pkgconfig make cqp make[1]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found --------------------------------- BUILDING CQP cd cqp; make make[2]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o cqp.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include cqp.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o symtab.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include symtab.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o eval.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include eval.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o tree.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include tree.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o options.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:57 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include options.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o corpmanag.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:57 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include corpmanag.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o regex2dfa.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:57 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include regex2dfa.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o output.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:57 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include output.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ranges.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:57 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ranges.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o builtins.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:57 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include builtins.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o groups.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:57 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include groups.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o targets.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:57 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include targets.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o matchlist.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:57 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include matchlist.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o concordance.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:57 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include concordance.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o parse_actions.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:58 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include parse_actions.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o attlist.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:58 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include attlist.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o context_descriptor.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include 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-I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:58 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ascii-print.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o sgml-print.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:58 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include sgml-print.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o html-print.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:58 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include html-print.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o latex-print.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include 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/packages/gcc/12.2.0-nnbserq/bin/gcc -c -o print_align.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:58 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include print_align.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o macro.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:58 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include macro.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o parser.tab.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:59 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include parser.tab.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o lex.yy.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:59 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include lex.yy.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ../CQi/server.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:59 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ../CQi/server.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ../CQi/auth.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:59 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ../CQi/auth.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ../CQi/log.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:59 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ../CQi/log.c rm -f libcqp.a ar cqs libcqp.a cqp.o symtab.o eval.o tree.o options.o corpmanag.o regex2dfa.o output.o ranges.o builtins.o groups.o targets.o matchlist.o concordance.o parse_actions.o attlist.o context_descriptor.o print-modes.o ascii-print.o sgml-print.o html-print.o latex-print.o variables.o print_align.o macro.o parser.tab.o lex.yy.o ../CQi/server.o ../CQi/auth.o ../CQi/log.o make[2]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp' make[1]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb PKG_CONFIG_PATH=/home/th798/.conda/envs/emacs1/lib/pkgconfig:/home/th798/lib/pkgconfig:/home/th798/lib64/pkgconfig make utils make[1]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found --------------------------------- BUILDING UTILITIES cd utils; make make[2]: Entering directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/utils' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found /packages/gcc/12.2.0-nnbserq/bin/gcc -c -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:59 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -o cwb-encode.o cwb-encode.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:55:59 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -o cwb-makeall.o cwb-makeall.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:56:00 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -o cwb-huffcode.o cwb-huffcode.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 13:56:00 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -o cwb-compress-rdx.o cwb-compress-rdx.c --------------------------------- CREATING ARCHIVE rm -f libcwb.a ar cqs libcwb.a cwb-encode.o cwb-makeall.o cwb-huffcode.o cwb-compress-rdx.o make[2]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/utils' make[1]: Leaving directory '/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o RcppCWB.so RcppExports.o addons.o cl.o cqp.o utils.o -L/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cl -L/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/cqp -L/tmp/th798/26770135/RtmpC34I72/R.INSTALL24f39b2279d9d0/RcppCWB/src/cwb/utils -lcwb -lcqp -lcl -L/home/th798/.conda/envs/emacs1/lib -lglib-2.0 -lpcre2-8 installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-RcppCWB/00new/RcppCWB/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppCWB) * installing *source* package 'knitr' ... ** this is package 'knitr' version '1.51' ** package 'knitr' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitr) * installing *source* package 'covr' ... ** this is package 'covr' version '3.6.5' ** package 'covr' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reassign.c -o reassign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o covr.so reassign.o installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-covr/00new/covr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (covr) * installing *source* package 'protolite' ... ** this is package 'protolite' version '2.3.1' ** package 'protolite' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-pthread -I/home/th798/.conda/envs/emacs1/include Using PKG_LIBS=-L/home/th798/.conda/envs/emacs1/lib -lprotobuf Found C++17 compiler: /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include Using libprotoc 3.11.2 from /home/th798/.conda/envs/emacs1/bin/protoc ** libs using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -I/home/th798/.conda/envs/emacs1/include -DUSENEWAPI -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -I/home/th798/.conda/envs/emacs1/include -DUSENEWAPI -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c geobuf.cpp -o geobuf.o In file included from /home/th798/.conda/envs/emacs1/include/google/protobuf/implicit_weak_message.h:39, from /home/th798/.conda/envs/emacs1/include/google/protobuf/parse_context.h:42, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map_type_handler.h:34, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map.h:49, from /home/th798/.conda/envs/emacs1/include/google/protobuf/generated_message_table_driven.h:34, from geobuf.pb.h:26, from geobuf.cpp:1: /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2496:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2496 | : public std::iterator { | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/string:45, from geobuf.pb.h:8: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2518:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2518 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2549:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2549 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2573:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2573 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -I/home/th798/.conda/envs/emacs1/include -DUSENEWAPI -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c geobuf.pb.cc -o geobuf.pb.o In file included from /home/th798/.conda/envs/emacs1/include/google/protobuf/implicit_weak_message.h:39, from /home/th798/.conda/envs/emacs1/include/google/protobuf/parse_context.h:42, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map_type_handler.h:34, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map.h:49, from /home/th798/.conda/envs/emacs1/include/google/protobuf/generated_message_table_driven.h:34, from geobuf.pb.h:26, from geobuf.pb.cc:4: /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2496:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2496 | : public std::iterator { | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/string:45, from geobuf.pb.h:8: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2518:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2518 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2549:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2549 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2573:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2573 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -I/home/th798/.conda/envs/emacs1/include -DUSENEWAPI -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.cpp -o init.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -I/home/th798/.conda/envs/emacs1/include -DUSENEWAPI -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mvt.pb.cc -o mvt.pb.o In file included from /home/th798/.conda/envs/emacs1/include/google/protobuf/implicit_weak_message.h:39, from /home/th798/.conda/envs/emacs1/include/google/protobuf/parse_context.h:42, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map_type_handler.h:34, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map.h:49, from /home/th798/.conda/envs/emacs1/include/google/protobuf/generated_message_table_driven.h:34, from mvt.pb.h:26, from mvt.pb.cc:4: /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2496:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2496 | : public std::iterator { | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/string:45, from mvt.pb.h:8: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2518:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2518 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2549:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2549 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2573:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2573 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -I/home/th798/.conda/envs/emacs1/include -DUSENEWAPI -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rexp.pb.cc -o rexp.pb.o In file included from /home/th798/.conda/envs/emacs1/include/google/protobuf/implicit_weak_message.h:39, from /home/th798/.conda/envs/emacs1/include/google/protobuf/parse_context.h:42, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map_type_handler.h:34, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map.h:49, from /home/th798/.conda/envs/emacs1/include/google/protobuf/generated_message_table_driven.h:34, from rexp.pb.h:26, from rexp.pb.cc:4: /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2496:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2496 | : public std::iterator { | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/string:45, from rexp.pb.h:8: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2518:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2518 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2549:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2549 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2573:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2573 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -I/home/th798/.conda/envs/emacs1/include -DUSENEWAPI -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c serialize.cpp -o serialize.o In file included from /home/th798/.conda/envs/emacs1/include/google/protobuf/implicit_weak_message.h:39, from /home/th798/.conda/envs/emacs1/include/google/protobuf/parse_context.h:42, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map_type_handler.h:34, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map.h:49, from /home/th798/.conda/envs/emacs1/include/google/protobuf/generated_message_table_driven.h:34, from rexp.pb.h:26, from serialize.cpp:1: /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2496:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2496 | : public std::iterator { | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/string:45, from rexp.pb.h:8: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2518:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2518 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2549:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2549 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2573:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2573 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -I/home/th798/.conda/envs/emacs1/include -DUSENEWAPI -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ungeobuf.cpp -o ungeobuf.o In file included from /home/th798/.conda/envs/emacs1/include/google/protobuf/implicit_weak_message.h:39, from /home/th798/.conda/envs/emacs1/include/google/protobuf/parse_context.h:42, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map_type_handler.h:34, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map.h:49, from /home/th798/.conda/envs/emacs1/include/google/protobuf/generated_message_table_driven.h:34, from geobuf.pb.h:26, from ungeobuf.cpp:1: /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2496:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2496 | : public std::iterator { | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/string:45, from geobuf.pb.h:8: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2518:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2518 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2549:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2549 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2573:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2573 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -I/home/th798/.conda/envs/emacs1/include -DUSENEWAPI -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c unmvt.cpp -o unmvt.o In file included from /home/th798/.conda/envs/emacs1/include/google/protobuf/implicit_weak_message.h:39, from /home/th798/.conda/envs/emacs1/include/google/protobuf/parse_context.h:42, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map_type_handler.h:34, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map.h:49, from /home/th798/.conda/envs/emacs1/include/google/protobuf/generated_message_table_driven.h:34, from mvt.pb.h:26, from unmvt.cpp:1: /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2496:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2496 | : public std::iterator { | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/string:45, from mvt.pb.h:8: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2518:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2518 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2549:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2549 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2573:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2573 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -pthread -I/home/th798/.conda/envs/emacs1/include -DUSENEWAPI -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c unserialize.cpp -o unserialize.o In file included from /home/th798/.conda/envs/emacs1/include/google/protobuf/implicit_weak_message.h:39, from /home/th798/.conda/envs/emacs1/include/google/protobuf/parse_context.h:42, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map_type_handler.h:34, from /home/th798/.conda/envs/emacs1/include/google/protobuf/map.h:49, from /home/th798/.conda/envs/emacs1/include/google/protobuf/generated_message_table_driven.h:34, from rexp.pb.h:26, from unserialize.cpp:1: /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2496:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2496 | : public std::iterator { | ^~~~~~~~ In file included from /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/string:45, from rexp.pb.h:8: /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2518:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2518 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2549:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2549 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /home/th798/.conda/envs/emacs1/include/google/protobuf/repeated_field.h:2573:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 2573 | : public std::iterator { | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../include/c++/12.2.0/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o protolite.so RcppExports.o geobuf.o geobuf.pb.o init.o mvt.pb.o rexp.pb.o serialize.o ungeobuf.o unmvt.o unserialize.o -L/home/th798/.conda/envs/emacs1/lib -lprotobuf installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-protolite/00new/protolite/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (protolite) * installing *source* package 'promises' ... ** this is package 'promises' version '1.5.0' ** package 'promises' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (promises) * installing *source* package 'rmarkdown' ... ** this is package 'rmarkdown' version '2.30' ** package 'rmarkdown' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmarkdown) * installing *source* package 'tidytext' ... ** this is package 'tidytext' version '0.4.3' ** package 'tidytext' successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so': /projects/genomic-ml/R/R-devel/library/fansi/libs/fansi.so: undefined symbol: R_nchar Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted ERROR: lazy loading failed for package 'tidytext' * removing '/tmp/th798/26770135/R-devel/1055/library/tidytext' * installing *source* package 'htmlwidgets' ... ** this is package 'htmlwidgets' version '1.6.4' ** package 'htmlwidgets' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmlwidgets) * installing *source* package 'httpuv' ... ** this is package 'httpuv' version '1.6.16' ** package 'httpuv' successfully unpacked and MD5 sums checked ** using staged installation ** Using bundled copy of libuv ** PKG_CFLAGS=-Ilibuv/include ** PKG_LIBS=./libuv/.libs/libuv.b ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c callback.cpp -o callback.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c callbackqueue.cpp -o callbackqueue.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c filedatasource-unix.cpp -o filedatasource-unix.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c filedatasource-win.cpp -o filedatasource-win.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fs.cpp -o fs.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gzipdatasource.cpp -o gzipdatasource.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c http.cpp -o http.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c httprequest.cpp -o httprequest.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c httpresponse.cpp -o httpresponse.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c httpuv.cpp -o httpuv.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c md5.c -o md5.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mime.cpp -o mime.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c socket.cpp -o socket.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c staticpath.cpp -o staticpath.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c thread.cpp -o thread.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c timegm.cpp -o timegm.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.cpp -o utils.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uvutil.cpp -o uvutil.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c webapplication.cpp -o webapplication.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c websockets-base.cpp -o websockets-base.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c websockets-hixie76.cpp -o websockets-hixie76.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c websockets-hybi03.cpp -o websockets-hybi03.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c websockets-ietf.cpp -o websockets-ietf.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c websockets.cpp -o websockets.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c winutils.cpp -o winutils.o cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4 ignoring -p /usr/bin/cp -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4 cd libuv; \ if ! command -v automake >/dev/null 2>&1 ; then \ echo "automake not found. Touching files so configure will not try to run automake."; \ touch aclocal.m4; \ touch -r aclocal.m4 configure Makefile.in; \ else \ echo "automake found. Running autoupdate and autogen.sh."; \ autoupdate; \ sh autogen.sh; \ fi; \ chmod +x configure; \ CC="/packages/gcc/12.2.0-nnbserq/bin/gcc" CFLAGS="-I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fpic -fvisibility=hidden -DNDEBUG" CPPFLAGS="-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include" AR="ar" RANLIB="ranlib" LDFLAGS="-L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64" ./configure "--quiet" automake not found. Touching files so configure will not try to run automake. /usr/bin/cp .//depcomp conftest.dir make --directory=libuv \ HAVE_DTRACE=0 make[1]: Entering directory '/tmp/th798/26770135/RtmpH64XdX/R.INSTALL2505a27f58148/httpuv/src/libuv' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CC src/unix/libuv_la-epoll.lo CCLD libuv.la make[1]: Leaving directory '/tmp/th798/26770135/RtmpH64XdX/R.INSTALL2505a27f58148/httpuv/src/libuv' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c http-parser/http_parser.c -o http-parser/http_parser.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c sha1/sha1.c -o sha1/sha1.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-devel/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/th798/26770135/R-devel/1055/library/later/include' -I'/tmp/th798/26770135/R-devel/1055/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c base64/base64.cpp -o base64/base64.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o httpuv.so RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o gzipdatasource.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o ./libuv/.libs/libuv.b ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-httpuv/00new/httpuv/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpuv) * installing *source* package 'DT' ... ** this is package 'DT' version '0.34.0' ** package 'DT' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DT) * installing *source* package 'shiny' ... ** this is package 'shiny' version '1.12.1' ** package 'shiny' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) * installing *source* package 'rhandsontable' ... ** this is package 'rhandsontable' version '0.3.8' ** package 'rhandsontable' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhandsontable) * installing *source* package 'shinythemes' ... ** this is package 'shinythemes' version '1.2.0' ** package 'shinythemes' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinythemes) * installing *source* package 'shinyjs' ... ** this is package 'shinyjs' version '2.1.1' ** package 'shinyjs' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyjs) * installing *source* package 'miniUI' ... ** this is package 'miniUI' version '0.1.2' ** package 'miniUI' successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miniUI) * installing *source* package 'polmineR' ... ** this is package 'polmineR' version '0.8.9' ** package 'polmineR' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so': /projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so: undefined symbol: Rf_GetOption Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted ERROR: lazy loading failed for package 'polmineR' * removing '/tmp/th798/26770135/R-devel/1055/library/polmineR' The downloaded source packages are in '/tmp/th798/26770135/Rtmpewf6WB/downloaded_packages' Warning messages: 1: In install.packages(rev.dep, dep = TRUE) : installation of package 'tidytext' had non-zero exit status 2: In install.packages(rev.dep, dep = TRUE) : installation of package 'polmineR' had non-zero exit status > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 315.311 38.922 364.507 > print(Sys.time()) [1] "2026-02-02 13:59:56 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2026-02-02 13:59:56 MST" Installing package into '/tmp/th798/26770135/R-devel/1055/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.18.2.1' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollapply.c -o frollapply.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c hash.c -o hash.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mergelist.c -o mergelist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shellsort.c -o shellsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o hash.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fvisibility=hidden -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fvisibility=hidden -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/26770135/R-devel/1055/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2026-02-02 14:00:24 MST" * using log directory '/tmp/th798/26770135/R-devel/1055/polmineR.Rcheck' * using R Under development (unstable) (2026-02-02 r89367) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * current time: 2026-02-02 21:00:25Z * checking for file 'polmineR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'polmineR' version '0.8.9' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: 'tidytext' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'polmineR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: 'hits.R' 'size.R' 'utils.R' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See '/tmp/th798/26770135/R-devel/1055/polmineR.Rcheck/00check.log' for details. [1] "2026-02-02 14:19:38 MST" [1] "2026-02-02 14:19:38 MST" Installing package into '/tmp/th798/26770135/R-devel/1055/library' (as 'lib' is unspecified) Warning: invalid package '/scratch/th798/data.table-revdeps/2026-02-02/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz' Error: ERROR: no packages specified [1] "2026-02-02 14:19:38 MST" * using log directory '/tmp/th798/26770135/R-devel/1055/polmineR.Rcheck' * using R Under development (unstable) (2026-02-02 r89367) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * current time: 2026-02-02 21:19:39Z * checking for file 'polmineR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'polmineR' version '0.8.9' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: 'tidytext' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'polmineR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: 'hits.R' 'size.R' 'utils.R' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See '/tmp/th798/26770135/R-devel/1055/polmineR.Rcheck/00check.log' for details. [1] "2026-02-02 14:38:19 MST" Warning message: In install.packages(dt.tar.gz, repos = NULL) : installation of package '/scratch/th798/data.table-revdeps/2026-02-02/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz' had non-zero exit status > system(paste(c("diff -u", Rcheck.list), collapse=" ")) --- R_Under_development_unstable_2026-02-02_r89367/release_1.18.2.1.Rcheck/00check.log 2026-02-02 14:19:38.023766872 -0700 +++ R_Under_development_unstable_2026-02-02_r89367/master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.Rcheck/00check.log 2026-02-02 14:38:18.994977921 -0700 @@ -6,7 +6,7 @@ GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII -* current time: 2026-02-02 21:00:25Z +* current time: 2026-02-02 21:19:39Z * checking for file 'polmineR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'polmineR' version '0.8.9' > library(data.table, lib.loc=R.home("library")) Error: package or namespace load failed for 'data.table' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so': /projects/genomic-ml/R/R-devel/library/data.table/libs/data_table.so: undefined symbol: Rf_GetOption Execution halted WARNING: ignoring environment value of R_HOME R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > cargs <- commandArgs(trailingOnly=TRUE) > if(length(cargs)==0){ + ## before running interactively, make sure to start emacs/R with + ## environment defined in /scratch/...check_one.sh, particularly + ## R_LIBS_USER=/tmp/... otherwise we get error when installing + ## data.table. + base <- "/scratch/th798/data.table-revdeps/*" + cargs <- c( + Sys.glob(file.path(base,"deps.csv")), + "349", + Sys.glob(file.path(base, "data.table_release_*tar.gz")), + Sys.glob(file.path(base, "data.table_master_*tar.gz")) + ) + } > names(cargs) <- c("deps.csv", "task.str", "release", "master") > dput(cargs) c(deps.csv = "/scratch/th798/data.table-revdeps/2026-02-02/deps.csv", task.str = "1055", release = "/scratch/th798/data.table-revdeps/2026-02-02/data.table_release_1.18.2.1.tar.gz", master = "/scratch/th798/data.table-revdeps/2026-02-02/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz" ) > (task.dir <- dirname(.libPaths()[1]))#should be /tmp/th798/slurmid/R-vers [1] "/tmp/th798/26770135/R-release/1055" > if(requireNamespace("R.cache"))R.cache::getCachePath() Loading required namespace: R.cache [1] "/tmp/th798/26770135/R-release/1055/R.cache" > task.id <- as.integer(cargs[["task.str"]]) > deps.df <- read.csv(cargs[["deps.csv"]]) > (rev.dep <- deps.df$Package[task.id]) [1] "polmineR" > job.dir <- file.path(dirname(cargs[["deps.csv"]]), "tasks", task.id) > setwd(task.dir) > .libPaths() [1] "/tmp/th798/26770135/R-release/1055/library" [2] "/projects/genomic-ml/R/R-release/library" > options(repos=c(#this should be in ~/.Rprofile too. + CRAN="http://cloud.r-project.org")) > print(Sys.time()) [1] "2026-02-02 14:38:25 MST" > install.time <- system.time({ + install.packages(rev.dep, dep=TRUE) + }) Installing package into '/tmp/th798/26770135/R-release/1055/library' (as 'lib' is unspecified) also installing the dependencies 'RcppCWB', 'highlight' trying URL 'http://cloud.r-project.org/src/contrib/RcppCWB_0.6.10.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/highlight_0.5.2.tar.gz' trying URL 'http://cloud.r-project.org/src/contrib/polmineR_0.8.9.tar.gz' * installing *source* package 'RcppCWB' ... ** this is package 'RcppCWB' version '0.6.10' ** package 'RcppCWB' successfully unpacked and MD5 sums checked ** using staged installation * operating system detected for CWB configuration: Linux * Linux distribution ID: "rhel" (unsupported, adapting the configuration may be necessary) * architecture: x86_64 ... using config 'linux-64' * using CWB platform configuration file: linux-64 * adapt CWB configuration file to use compiler: /packages/gcc/12.2.0-nnbserq/bin/gcc sed: -e expression #1, char 54: unknown option to `s' * using pkg-config to check whether glib-2.0 is available ... yes * using pkg-config to get linker flags for glib-2.0: -L/home/th798/.conda/envs/emacs1/lib -lglib-2.0 * check whether pcre2 is available ... yes (version: 10.32) * checking whether pcre2test is available ... no * using pcre2-config to get libdirs for pcre2 (8bit): -lpcre2-8 * using pcre2-config to get cflags for pcre2: * using build directory: /tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB ** libs using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/CQi -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c RcppExports.cpp -o RcppExports.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/CQi -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c addons.cpp -o addons.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/CQi -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cl.cpp -o cl.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/CQi -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cqp.cpp -o cqp.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl -I/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/CQi -I'/projects/genomic-ml/R/R-release/library/Rcpp/include' -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.cpp -o utils.o cd cwb; R_PACKAGE_SOURCE=/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb PKG_CONFIG_PATH=/home/th798/.conda/envs/emacs1/lib/pkgconfig:/home/th798/lib/pkgconfig:/home/th798/lib64/pkgconfig make clean make[1]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found for i in cl cqp ; do if [ -f "$i/Makefile" ]; then cd $i; make clean; cd ..; fi; done; make[2]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found rm -f *.o libcl.a registry.output *~ make[2]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl' make[2]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found rm -f cqp cqpcl cqpserver *.o ../CQi/*.o parser.output *~ ../CQi/*~ # TODO what is "parser.output" ? make[2]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp' rm -f *~ config/*/*~ CQi/*~ CQi/*.o technical/*~ TAGS rm -f -rf build make[1]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb PKG_CONFIG_PATH=/home/th798/.conda/envs/emacs1/lib/pkgconfig:/home/th798/lib/pkgconfig:/home/th798/lib64/pkgconfig make depend make[1]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found for i in cl cqp ; do cd $i; make depend.mk; cd ..; done; make[2]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found make[2]: 'depend.mk' is up to date. make[2]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl' make[2]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found make[2]: 'depend.mk' is up to date. make[2]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp' make[1]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb PKG_CONFIG_PATH=/home/th798/.conda/envs/emacs1/lib/pkgconfig:/home/th798/lib/pkgconfig:/home/th798/lib64/pkgconfig make cl make[1]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found --------------------------------- BUILDING CORPUS LIBRARY (CL) cd cl; make make[2]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o globals.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:50 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include globals.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o macros.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:50 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include macros.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ui-helpers.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:50 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ui-helpers.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o list.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:50 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include list.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o lexhash.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:50 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include lexhash.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ngram-hash.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:51 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ngram-hash.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o bitfields.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:51 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include bitfields.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o storage.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:51 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include storage.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o fileutils.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:51 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include fileutils.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o special-chars.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:51 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include special-chars.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o regopt.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:51 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include regopt.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o corpus.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:51 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include corpus.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o attributes.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:51 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include attributes.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o makecomps.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:51 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include makecomps.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o registry.tab.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:51 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include registry.tab.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o lex.creg.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:52 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include lex.creg.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o cdaccess.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:52 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include cdaccess.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o bitio.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:52 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include bitio.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o endian.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:52 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include endian.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o compression.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:52 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include compression.c rm -f libcl.a ar cqs libcl.a globals.o macros.o ui-helpers.o list.o lexhash.o ngram-hash.o bitfields.o storage.o fileutils.o special-chars.o regopt.o corpus.o attributes.o makecomps.o registry.tab.o lex.creg.o cdaccess.o bitio.o endian.o compression.o /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o dl_stub.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:52 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include dl_stub.c make[2]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl' make[1]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb PKG_CONFIG_PATH=/home/th798/.conda/envs/emacs1/lib/pkgconfig:/home/th798/lib/pkgconfig:/home/th798/lib64/pkgconfig make cqp make[1]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found --------------------------------- BUILDING CQP cd cqp; make make[2]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o cqp.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:52 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include cqp.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o symtab.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:52 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include symtab.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o eval.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:52 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include eval.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o tree.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:53 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include tree.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o options.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:53 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include options.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o corpmanag.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:53 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include corpmanag.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o regex2dfa.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:53 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include regex2dfa.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o output.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:53 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include output.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ranges.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:53 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ranges.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o builtins.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:53 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include builtins.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o groups.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:53 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include groups.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o targets.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:53 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include targets.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o matchlist.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:53 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include matchlist.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o concordance.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include concordance.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o parse_actions.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include parse_actions.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o attlist.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include attlist.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o context_descriptor.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include context_descriptor.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o print-modes.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include print-modes.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ascii-print.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ascii-print.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o sgml-print.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include sgml-print.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o html-print.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include html-print.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o latex-print.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include latex-print.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o variables.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include variables.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o print_align.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:54 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include print_align.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o macro.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include macro.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o parser.tab.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include parser.tab.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o lex.yy.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include lex.yy.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ../CQi/server.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ../CQi/server.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ../CQi/auth.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ../CQi/auth.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -o ../CQi/log.o -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include ../CQi/log.c rm -f libcqp.a ar cqs libcqp.a cqp.o symtab.o eval.o tree.o options.o corpmanag.o regex2dfa.o output.o ranges.o builtins.o groups.o targets.o matchlist.o concordance.o parse_actions.o attlist.o context_descriptor.o print-modes.o ascii-print.o sgml-print.o html-print.o latex-print.o variables.o print_align.o macro.o parser.tab.o lex.yy.o ../CQi/server.o ../CQi/auth.o ../CQi/log.o make[2]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp' make[1]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb' cd cwb; R_PACKAGE_SOURCE=/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb PKG_CONFIG_PATH=/home/th798/.conda/envs/emacs1/lib/pkgconfig:/home/th798/lib/pkgconfig:/home/th798/lib64/pkgconfig make utils make[1]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found --------------------------------- BUILDING UTILITIES cd utils; make make[2]: Entering directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/utils' Package ncurses was not found in the pkg-config search path. Perhaps you should add the directory containing `ncurses.pc' to the PKG_CONFIG_PATH environment variable No package 'ncurses' found /packages/gcc/12.2.0-nnbserq/bin/gcc -c -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:55 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -o cwb-encode.o cwb-encode.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -o cwb-makeall.o cwb-makeall.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -o cwb-huffcode.o cwb-huffcode.c /packages/gcc/12.2.0-nnbserq/bin/gcc -c -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -fPIC -fPIC -m64 -DR_PACKAGE -DNDEBUG -DCOMPILE_DATE=\""Mon Feb 2 14:38:56 MST 2026"\" -DCWB_VERSION=\"3.4.33\" -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -o cwb-compress-rdx.o cwb-compress-rdx.c --------------------------------- CREATING ARCHIVE rm -f libcwb.a ar cqs libcwb.a cwb-encode.o cwb-makeall.o cwb-huffcode.o cwb-compress-rdx.o make[2]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/utils' make[1]: Leaving directory '/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o RcppCWB.so RcppExports.o addons.o cl.o cqp.o utils.o -L/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cl -L/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/cqp -L/tmp/th798/26770135/RtmpTFrTdN/R.INSTALL25e01b3684e57d/RcppCWB/src/cwb/utils -lcwb -lcqp -lcl -L/home/th798/.conda/envs/emacs1/lib -lglib-2.0 -lpcre2-8 installing to /tmp/th798/26770135/R-release/1055/library/00LOCK-RcppCWB/00new/RcppCWB/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppCWB) * installing *source* package 'highlight' ... ** this is package 'highlight' version '0.5.2' ** package 'highlight' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' using C++ compiler: 'g++ (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ASBeautifier.cpp -o ASBeautifier.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ASEnhancer.cpp -o ASEnhancer.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ASFormatter.cpp -o ASFormatter.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ASResource.cpp -o ASResource.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ASStreamIterator.cpp -o ASStreamIterator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c Matcher.cpp -o Matcher.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c Pattern.cpp -o Pattern.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ansigenerator.cpp -o ansigenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bbcodegenerator.cpp -o bbcodegenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c codegenerator.cpp -o codegenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c configurationreader.cpp -o configurationreader.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ctagsreader.cpp -o ctagsreader.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c datadir.cpp -o datadir.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c documentstyle.cpp -o documentstyle.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c elementstyle.cpp -o elementstyle.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c highlight_wrapper.cpp -o highlight_wrapper.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c htmlgenerator.cpp -o htmlgenerator.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c languagedefinition.cpp -o languagedefinition.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c latexgenerator.cpp -o latexgenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c platform_fs.cpp -o platform_fs.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c preformatter.cpp -o preformatter.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c render.cpp -o render.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rtfgenerator.cpp -o rtfgenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c stringtools.cpp -o stringtools.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c stylecolour.cpp -o stylecolour.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c svggenerator.cpp -o svggenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c texgenerator.cpp -o texgenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c xhtmlgenerator.cpp -o xhtmlgenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c xmlgenerator.cpp -o xmlgenerator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I. -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c xterm256generator.cpp -o xterm256generator.o /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o highlight.so ASBeautifier.o ASEnhancer.o ASFormatter.o ASResource.o ASStreamIterator.o Matcher.o Pattern.o ansigenerator.o bbcodegenerator.o codegenerator.o configurationreader.o ctagsreader.o datadir.o documentstyle.o elementstyle.o highlight_wrapper.o htmlgenerator.o init.o languagedefinition.o latexgenerator.o platform_fs.o preformatter.o render.o rtfgenerator.o stringtools.o stylecolour.o svggenerator.o texgenerator.o xhtmlgenerator.o xmlgenerator.o xterm256generator.o installing to /tmp/th798/26770135/R-release/1055/library/00LOCK-highlight/00new/highlight/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (highlight) * installing *source* package 'polmineR' ... ** this is package 'polmineR' version '0.8.9' ** package 'polmineR' successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'nrow' from package 'base' in package 'polmineR' Creating a generic function for 'ncol' from package 'base' in package 'polmineR' Creating a generic function for 'colnames' from package 'base' in package 'polmineR' Creating a generic function for 'sample' from package 'base' in package 'polmineR' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (polmineR) The downloaded source packages are in '/tmp/th798/26770135/RtmpTiNGGp/downloaded_packages' > cat("Time to install revdep:\n") Time to install revdep: > print(install.time) user system elapsed 78.47 7.33 90.10 > print(Sys.time()) [1] "2026-02-02 14:39:55 MST" > downloaded_packages <- file.path( + tempdir(), + "downloaded_packages") > dl.glob <- file.path( + downloaded_packages, + paste0(rev.dep,"_*.tar.gz")) > rev.dep.dl.row <- cbind(rev.dep, Sys.glob(dl.glob)) > colnames(rev.dep.dl.row) <- c("pkg","path") > rev.dep.release.tar.gz <- normalizePath(rev.dep.dl.row[,"path"], mustWork=TRUE) > pkg.Rcheck <- paste0(rev.dep, ".Rcheck") > > proj.dir <- "~/genomic-ml/data.table-revdeps" > source(file.path(proj.dir, "myStatus.R")) > Rvers <- gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])) > dir.create(Rvers, showWarnings=FALSE) > Rcheck.list <- list() > for(dt.version.short in c("release", "master")){ + dt.tar.gz <- cargs[[dt.version.short]] + dt.version <- gsub(".tar.gz|/.*?_", "", dt.tar.gz) + print(Sys.time()) + install.packages(dt.tar.gz, repos=NULL) + print(Sys.time()) + check.cmd <- get_check_cmd(rev.dep.release.tar.gz) + system(check.cmd) + print(Sys.time()) + dest.Rcheck <- file.path( + Rvers, + paste0(dt.version, ".Rcheck")) + unlink(dest.Rcheck, recursive=TRUE) + file.rename(pkg.Rcheck, dest.Rcheck) + Rcheck.list[[dt.version]] <- file.path(dest.Rcheck, "00check.log") + } [1] "2026-02-02 14:39:55 MST" Installing package into '/tmp/th798/26770135/R-release/1055/library' (as 'lib' is unspecified) * installing *source* package 'data.table' ... ** this is package 'data.table' version '1.18.2.1' ** package 'data.table' successfully unpacked and MD5 sums checked ** using staged installation zlib 1.2.13 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: 'gcc (Spack GCC) 12.2.0' /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c assign.c -o assign.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c between.c -o between.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c bmerge.c -o bmerge.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c chmatch.c -o chmatch.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c cj.c -o cj.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c coalesce.c -o coalesce.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c dogroups.c -o dogroups.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fastmean.c -o fastmean.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fcast.c -o fcast.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fifelse.c -o fifelse.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fmelt.c -o fmelt.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c forder.c -o forder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frank.c -o frank.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fread.c -o fread.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c freadR.c -o freadR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c froll.c -o froll.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollR.c -o frollR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frolladaptive.c -o frolladaptive.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c frollapply.c -o frollapply.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fsort.c -o fsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwrite.c -o fwrite.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c fwriteR.c -o fwriteR.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c gsumm.c -o gsumm.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c hash.c -o hash.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c idatetime.c -o idatetime.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c ijoin.c -o ijoin.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c init.c -o init.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c inrange.c -o inrange.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c mergelist.c -o mergelist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nafill.c -o nafill.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c negate.c -o negate.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c nqrecreateindices.c -o nqrecreateindices.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c openmp-utils.c -o openmp-utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c programming.c -o programming.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c quickselect.c -o quickselect.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c rbindlist.c -o rbindlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c reorder.c -o reorder.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shellsort.c -o shellsort.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c shift.c -o shift.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c snprintf.c -o snprintf.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c subset.c -o subset.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c transpose.c -o transpose.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c types.c -o types.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c uniqlist.c -o uniqlist.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c utils.c -o utils.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c vecseq.c -o vecseq.o /packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include -fpic -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include -c wrappers.c -o wrappers.o /packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o frollapply.o fsort.o fwrite.o fwriteR.o gsumm.o hash.o idatetime.o ijoin.o init.o inrange.o mergelist.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shellsort.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fvisibility=hidden -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz PKG_CFLAGS = -fvisibility=hidden -fopenmp -I/home/th798/.conda/envs/emacs1/include PKG_LIBS = -fvisibility=hidden -fopenmp -L/home/th798/.conda/envs/emacs1/lib -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi installing to /tmp/th798/26770135/R-release/1055/library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) [1] "2026-02-02 14:40:23 MST" * using log directory '/tmp/th798/26770135/R-release/1055/polmineR.Rcheck' * using R version 4.5.2 (2025-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'polmineR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'polmineR' version '0.8.9' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'polmineR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: 'hits.R' 'size.R' 'utils.R' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(polmineR) WARNING: The locale of the R session is 'C': The character set is not specified. You may encounter problems when working with corpora with a latin-1 or UTF-8 encoding that include special characters. polmineR is throttled to use 2 cores as required by CRAN Repository Policy. To get full performance: * Use `n_cores <- parallel::detectCores()` to detect the number of cores available on your machine * Set number of cores using `options('polmineR.cores' = n_cores - 1)` and `data.table::setDTthreads(n_cores - 1)` Attaching package: 'polmineR' The following object is masked from 'package:testthat': context The following object is masked from 'package:base': use > use("polmineR") v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) > > test_check("polmineR") v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS i get token ids v get token ids [35ms] i get struc ids v get struc ids [78ms] i drop tokens outside strucs v drop tokens outside strucs [65ms] i get unique s-attribute values v get unique s-attribute values [352ms] i counting token per doc v counting token per doc [288ms] i decode strucs v decode strucs [33ms] i decode and recode token ids v decode and recode token ids [34ms] i adjust ids v adjust ids [35ms] i generate simple_triplet_matrix v generate simple_triplet_matrix [32ms] i get token ids v get token ids [70ms] i get struc ids v get struc ids [76ms] i drop tokens outside strucs v drop tokens outside strucs [45ms] i get unique s-attribute values v get unique s-attribute values [37ms] i generate unique document ids v generate unique document ids [141ms] i counting token per doc v counting token per doc [76ms] i decode tokens and generate factor v decode tokens and generate factor [99ms] i prepare row and column labels v prepare row and column labels [56ms] i generate simple_triplet_matrix v generate simple_triplet_matrix [55ms] i generating document ids v generating document ids ... done i getting ids v getting ids ... done i performing count v performing count ... done i decoding token ids v decoding token ids ... done i generating keys v generating keys ... done i generating simple triplet matrix v generating simple triplet matrix ... done i generating document ids v generating document ids ... done i getting ids v getting ids ... done i performing count v performing count ... done i decoding token ids v decoding token ids ... done i generating keys v generating keys ... done i generating simple triplet matrix v generating simple triplet matrix ... done i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [23ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [92ms] i assign names v assign names [15ms] i convert partition_bundle to `TermDocumentMatrix` i using p-attribute word i convert partition_bundle to `TermDocumentMatrix` i create temporary data.table v create temporary data.table ... done i convert partition_bundle to `TermDocumentMatrix` i assign keys to data.table v assign keys to data.table ... done i convert partition_bundle to `TermDocumentMatrix` i make unique keys v make unique keys ... done i convert partition_bundle to `TermDocumentMatrix` i run garbage collection v run garbage collection ... done i convert partition_bundle to `TermDocumentMatrix` i create TermDocumentMatrix v create TermDocumentMatrix ... done i convert partition_bundle to `TermDocumentMatrix` v convert partition_bundle to `TermDocumentMatrix` ... done i converting `TermDocumentMatrix` to `Matrix` v converting `TermDocumentMatrix` to `Matrix` ... done i convert partition_bundle to `TermDocumentMatrix` i using p-attribute word i convert partition_bundle to `TermDocumentMatrix` i create temporary data.table v create temporary data.table ... done i convert partition_bundle to `TermDocumentMatrix` i assign keys to data.table v assign keys to data.table ... done i convert partition_bundle to `TermDocumentMatrix` i make unique keys v make unique keys ... done i convert partition_bundle to `TermDocumentMatrix` i run garbage collection v run garbage collection ... done i convert partition_bundle to `TermDocumentMatrix` i create TermDocumentMatrix v create TermDocumentMatrix ... done i convert partition_bundle to `TermDocumentMatrix` v convert partition_bundle to `TermDocumentMatrix` ... done i converting `TermDocumentMatrix` to `Matrix` v converting `TermDocumentMatrix` to `Matrix` ... done i get token ids v get token ids [67ms] i get struc ids v get struc ids [71ms] i drop tokens outside strucs v drop tokens outside strucs [39ms] i get unique s-attribute values v get unique s-attribute values [33ms] i generate unique document ids v generate unique document ids [146ms] i counting token per doc v counting token per doc [80ms] i decode tokens and generate factor v decode tokens and generate factor [103ms] i prepare row and column labels v prepare row and column labels [45ms] i generate simple_triplet_matrix v generate simple_triplet_matrix [34ms] v corpus loaded: REUTERS v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs i distinct dates: 2 i subsetting by date i bundle class: subcorpus_bundle i subsetting by date i objects in bundle: plpr_subcorpus i subsetting by date i s-attribute for splitting ("date") is sibling of s-attribute "date" i subsetting by date i s-attribute "date" has values: yes i subsetting by date i get list of regions v get list of regions [17ms] i subsetting by date i instantiate 2 plpr_subcorpus objects v instantiate 2 plpr_subcorpus objects [52ms] i subsetting by date v subsetting by date [192ms] i generating speeches i generating names v generating names [339ms] i reorder objects v reorder objects [34ms] i coercing partitions to plpr_subcorpus v coercing partitions to plpr_subcorpus [210ms] ... get cpos and strucs i distinct dates detected: 1 i generating speeches v generating speeches [732ms] i generating names v generating names [91ms] i reordering partitions v reordering partitions [34ms] i coercing partitions to plpr_partitions v coercing partitions to plpr_partitions [33ms] i using p-attribute word i create temporary data.table v create temporary data.table ... done i assign keys to data.table v assign keys to data.table ... done i make unique keys v make unique keys ... done i run garbage collection v run garbage collection ... done i create TermDocumentMatrix v create TermDocumentMatrix ... done i using p-attribute word i create temporary data.table v create temporary data.table ... done i assign keys to data.table v assign keys to data.table ... done i make unique keys v make unique keys ... done i run garbage collection v run garbage collection ... done i create TermDocumentMatrix v create TermDocumentMatrix ... done x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. v corpus loaded: REUTERS v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs ... getting counts for p-attribute(s): word v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ... no hits for query: asdfasdf ... get cpos and strucs ... no hits for query: asdfasdf ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ... no hits for query: asdfasdf ... get cpos and strucs ... no hits for query: asdfasdf v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... creating data.table with corpus positions ... adding tokens ... generating phrases ... counting ... creating bundle of count objects v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) i decoding p-attribute: word v decoding p-attribute: word [202ms] i decoding p-attribute: pos v decoding p-attribute: pos [152ms] i decoding s-attribute: interjection v decoding s-attribute: interjection [214ms] i decoding s-attribute: date v decoding s-attribute: date [224ms] i decoding s-attribute: party v decoding s-attribute: party [249ms] i decoding s-attribute: speaker v decoding s-attribute: speaker [271ms] i decoding s-attribute: protocol_date v decoding s-attribute: protocol_date [190ms] i decoding s-attribute: protocol_lp v decoding s-attribute: protocol_lp [175ms] i decoding s-attribute: role v decoding s-attribute: role [198ms] i assembling data.table v assembling data.table [46ms] i decoding p-attribute: word v decoding p-attribute: word [217ms] i decoding s-attribute: party v decoding s-attribute: party [207ms] i assembling data.table v assembling data.table [16ms] i decoding p-attribute: word v decoding p-attribute: word [203ms] i assembling data.table v assembling data.table [15ms] i decoding p_attribute "word" v decoding p_attribute "word" [73ms] v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS v corpus loaded: UNGA ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [26ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word i coercion to `partition_bundle` class v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ... combining frequency lists ... statistical test: chisquare ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ... combining frequency lists ... statistical test: chisquare v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ... get cpos and strucs v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ... get cpos and strucs i s-attribute "date" has values: yes i get regions and get values v get regions and get values [20ms] i instantiate objects (n = 5) v instantiate objects (n = 5) [22ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "places" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 11) v instantiate objects (n = 11) [24ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [26ms] i assign names v assign names [13ms] v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i getting sizes ... getting sizes ! corpus loaded multiple times with following registries: i getting sizes * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp i getting sizes * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i getting sizes i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i getting sizes v getting sizes [48ms] i calculate frequencies v calculate frequencies [14ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' No hits for query: asdfasdf ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' No hits for query: "asdfasdfasdfasd.*" ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... getting corpus positions ... number of hits: 21 ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... checking that all p-attributes are available ... already present - skip getting ids for p-attribute: word ... generating contexts ... getting corpus positions ... number of hits: 7 ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... checking that all p-attributes are available ... already present - skip getting ids for p-attribute: word ... generating contexts ... getting corpus positions ... no hits for query: asdfasdf ... no matches for query (or no matches left after applying stoplist/positivelist) ... getting corpus positions ... no matches for query (or no matches left after applying stoplist/positivelist) ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... dropping nodes ... counting tokens in context ... creating new index for hits ... creating new index for tokens ... putting together matrix ... filtering by positivelist i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "date" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [17ms] i instantiate 37 plpr_subcorpus objects v instantiate 37 plpr_subcorpus objects [33ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [22ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [49ms] i assign names v assign names [14ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [22ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [49ms] i assign names v assign names [14ms] ... get cpos and strucs i bundle class: partition_bundle i objects in bundle: plpr_partition i s-attribute for splitting ("speaker") is sibling of s-attribute "interjection" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [18ms] i instantiate 124 plpr_partition objects v instantiate 124 plpr_partition objects [53ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "interjection" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [18ms] i instantiate 124 plpr_subcorpus objects v instantiate 124 plpr_subcorpus objects [51ms] v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS i s-attributes are not siblings, get relationship v s-attributes are not siblings, get relationship [18ms] i s-attributes not ordered according to tree structure (inefficient) i decode s-attribute "party" v decode s-attribute "party" [45ms] i merge corpus position results for s-attribute "party" v merge corpus position results for s-attribute "protocol_date" [110ms] i decode s-attribute "protocol_date" v decode s-attribute "protocol_date" [65ms] i merge corpus position results for s-attribute "protocol_date" v merge corpus position results for s-attribute "speaker" [114ms] i decode s-attribute "speaker" v decode s-attribute "speaker" [71ms] i merge corpus position results for s-attribute "speaker" v merge corpus position results for s-attribute "speaker" [895ms] i aggregate results and get sizes v aggregate results and get sizes [73ms] i s-attributes are not siblings, get relationship v s-attributes are not siblings, get relationship [18ms] i order of s-attributes starts with deep descendents i get regions for s-attribute "party" v get regions for s-attribute "party" [27ms] i get values for s-attribute "speaker" v get values for s-attribute "protocol_date" [53ms] i get values for s-attribute "protocol_date" v get values for s-attribute "protocol_date" [51ms] i aggregate region sizes v aggregate region sizes [40ms] i aggregate results and get sizes v aggregate results and get sizes [16ms] ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [22ms] i keep only matches for 3 values provided v keep only matches for 3 values provided [18ms] i instantiate objects (n = 3) v instantiate objects (n = 3) [22ms] i assign names v assign names [13ms] x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is descendent of s-attribute "protocol_date" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [17ms] i instantiate 37 plpr_subcorpus objects v instantiate 37 plpr_subcorpus objects [33ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "date" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [17ms] i instantiate 37 plpr_subcorpus objects v instantiate 37 plpr_subcorpus objects [32ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [21ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [47ms] i assign names v assign names [13ms] x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS v corpus loaded: REUTERS v corpus loaded: UNGA ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: REUTERS v corpus loaded: UNGA v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ... get cpos and strucs ... get cpos and strucs ... get cpos and strucs ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i Cannot map s-attributes and types ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i Cannot map s-attributes and types ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i Cannot map s-attributes and types Error in .checkTypos(e, names_x) : Object 'foo' not found amongst [struc, cpos_left, cpos_right, id] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i Cannot map s-attributes and types x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] i generating document ids v generating document ids ... done i getting ids v getting ids ... done i performing count v performing count ... done i decoding token ids v decoding token ids ... done i generating keys v generating keys ... done i generating simple triplet matrix v generating simple triplet matrix ... done ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] i using p-attribute word i create temporary data.table v create temporary data.table ... done i assign keys to data.table v assign keys to data.table ... done i make unique keys v make unique keys ... done i run garbage collection v run garbage collection ... done i create TermDocumentMatrix v create TermDocumentMatrix ... done ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [15ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [26ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "speaker" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [15ms] i instantiate 2 plpr_subcorpus objects v instantiate 2 plpr_subcorpus objects [26ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [22ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [48ms] i assign names v assign names [13ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [21ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [47ms] i assign names v assign names [13ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [21ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [47ms] i assign names v assign names [13ms] ... preparing struc table ... now performing counts ... finalizing tables i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "interjection" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [18ms] i instantiate 124 plpr_subcorpus objects v instantiate 124 plpr_subcorpus objects [52ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "date" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [29ms] i instantiate 77 plpr_subcorpus objects v instantiate 77 plpr_subcorpus objects [40ms] ... get cpos and strucs i bundle class: partition_bundle i objects in bundle: plpr_partition i s-attribute for splitting ("speaker") is sibling of s-attribute "date" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [17ms] i instantiate 77 plpr_partition objects v instantiate 77 plpr_partition objects [42ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("date") is sibling of s-attribute "interjection" i s-attribute "date" has values: yes i get list of regions v get list of regions [17ms] i instantiate 5 plpr_subcorpus objects v instantiate 5 plpr_subcorpus objects [26ms] ... get cpos and strucs i bundle class: partition_bundle i objects in bundle: plpr_partition i s-attribute for splitting ("date") is sibling of s-attribute "interjection" i s-attribute "date" has values: yes i get list of regions v get list of regions [18ms] i instantiate 5 plpr_partition objects v instantiate 5 plpr_partition objects [29ms] i s-attribute "date" has values: yes i get regions and get values v get regions and get values [34ms] i instantiate objects (n = 5) v instantiate objects (n = 5) [22ms] i assign names v assign names [13ms] i s-attribute "date" has values: yes i get regions and get values v get regions and get values [20ms] i instantiate objects (n = 5) v instantiate objects (n = 5) [23ms] i assign names v assign names [13ms] i s-attribute "protocol_date" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 5) v instantiate objects (n = 5) [22ms] i assign names v assign names [13ms] i split by s-attribute "protocol_date" i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("protocol_date") is ancestor of s-attribute "speaker" i s-attribute "protocol_date" has values: yes i get list of regions v get list of regions [15ms] i instantiate 2 plpr_subcorpus objects v instantiate 2 plpr_subcorpus objects [26ms] i objects in bundle after subsetting is 2 (3 less than before) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs ... getting counts for p-attribute(s): word v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' v corpus loaded: REUTERS v corpus loaded: UNGA ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... applying stoplist ... number of hits dropped due to stoplist: 13 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... filtering by positivelist ... number of hits dropped due to positivelist: 65 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... new number of hits: 12 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' ... checking that all p-attributes are available ... already present - skip getting ids for p-attribute: word ... decode p-attribute: word ... new number of hits: 12 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' [ FAIL 7 | WARN 48926 | SKIP 18 | PASS 684 ] == Skipped tests (18) ========================================================== * On CRAN (10): 'test_as.data.table.R:9:5', 'test_as.markdown.R:13:5', 'test_as.markdown.R:73:5', 'test_cooccurrences.R:96:5', 'test_cooccurrences.R:167:5', 'test_dispersion.R:43:5', 'test_get_token_stream.R:100:5', 'test_get_token_stream.R:138:5', 'test_html.R:9:5', 'test_subcorpus_bundle.R:187:5' * empty test (2): 'test_count.R:125:1', 'test_subcorpus.R:198:1' * knowingly not working (1): 'test_as.speeches.R:46:5' * use("GermaParl2") is not TRUE (5): 'test_as.speeches.R:86:5', 'test_hits.R:26:5', 'test_split.R:35:5', 'test_split.R:83:5', 'test_subcorpus.R:159:5' == Failed tests ================================================================ -- Failure ('test_chisquare.R:38:7'): check chisquare computation -------------- `chisquare_value_selfmade` (`actual`) not equal to `chisquare_value_fn` (`expected`). `actual`: Inf `expected`: 56 -- Failure ('test_get_token_stream.R:88:5'): get_token_stream()-method for matrix input -- nchar(ts_rm) (`actual`) not identical to 159L (`expected`). `actual`: 154 `expected`: 159 -- Failure ('test_get_token_stream.R:131:5'): --------------------------------- nchar(y) (`actual`) not identical to 51328L (`expected`). `actual`: 47081 `expected`: 51328 -- Failure ('test_pmi.R:32:5'): identity of phrase detection of decode-workflow and Cooccurrences workflow -- nrow(a_min) (`actual`) not identical to nrow(b_min) (`expected`). `actual`: 982 `expected`: 1143 -- Failure ('test_pmi.R:33:5'): identity of phrase detection of decode-workflow and Cooccurrences workflow -- a_min[["word_1"]] (`actual`) not identical to b_min[["a_word"]] (`expected`). `actual[4:9]`: "!" "!" "!" "\"" "\"" "\"" `expected[4:11]`: "!" "!" "!" "!" "!" "\"" "\"" "\"" `actual[24:29]`: ")" ")" ")" "," "," "," `expected[26:32]`: ")" ")" ")" "," "," "," "," `actual[44:49]`: "," "," "," "-" and 2 more... `expected[47:58]`: "," "," "," "," "," "," "," "," "," "-" ... `actual[55:60]`: "-" "-" "-" "." "." "." `expected[64:71]`: "-" "-" "-" "." "." "." "." "." actual | expected [101] ":" | ":" [112] [102] ":" | ":" [113] [103] ":" | ":" [114] - ":" [115] - "ffentlichen" [116] - "ber" [117] [104] "?" | "?" [118] [105] "?" | "?" [119] [106] "?" | "?" [120] [107] "?" | "?" [121] ... ... ... and 6 more ... actual | expected [114] "Arbeit" | "Arbeit" [129] [115] "Arbeit" | "Arbeit" [130] [116] "Arbeitnehmer" | "Arbeitnehmer" [131] - "Arbeitspltze" [132] [117] "Auch" | "Auch" [133] [118] "Auch" | "Auch" [134] [119] "Aufbau" | "Aufbau" [135] [120] "Aufgabe" | "Aufgabe" [136] [121] "Auswirkungen" | "Auswirkungen" [137] - "Brger" [138] ... ... ... and 5 more ... `actual[138:143]`: "Dann" "Darf" "Darum" "Das" "Das" "Das" `expected[156:163]`: "Dann" "Darf" "Darum" "Das" "Das" "Das" "Das" "Das" actual | expected [148] "Dazu" | "Dazu" [168] [149] "Deshalb" | "Deshalb" [169] [150] "Deshalb" | "Deshalb" [170] - "Deshalb" [171] [151] "Deswegen" | "Deswegen" [172] [152] "Deswegen" | "Deswegen" [173] - "Deutschland" [174] [153] "Deutschland" | "Deutschland" [175] [154] "Deutschland" | "Deutschland" [176] [155] "Die" | "Die" [177] `actual[166:171]`: "Es" "Es" "Euro" "FDP" "FDP" "Familie" `expected[188:194]`: "Es" "Es" "Euro" "Flle" "FDP" "FDP" "Familie" actual | expected [178] "Frage" | "Frage" [201] [179] "Fragen" | "Fragen" [202] [180] "Frau" | "Frau" [203] - "Freiheit" [204] - "GRNEN" [205] - "GRNEN" [206] [181] "Gemeinsam" | "Gemeinsam" [207] [182] "Geschichte" | "Geschichte" [208] [183] "Gesetz" | "Gesetz" [209] [184] "Gesundheit" | "Gesundheit" [210] ... ... ... and 10 more ... `actual[196:201]`: "Herr" "Herr" "Herr" "Hier" "Hier" "Hier" `expected[225:231]`: "Herr" "Herr" "Herr" "Herr" "Hier" "Hier" "Hier" `actual[205:210]`: "Ich" "Ich" "Ich" "Ideen" "Ihnen" "Ihnen" `expected[235:242]`: "Ich" "Ich" "Ich" "Ich" "Ich" "Ideen" "Ihnen" "Ihnen" actual | expected [223] "Jetzt" | "Jetzt" [255] [224] "Jetzt" | "Jetzt" [256] [225] "Jung" | "Jung" [257] - "Knnen" [258] [226] "Kauder" | "Kauder" [259] [227] "Kinder" | "Kinder" [260] [228] "Kinder" | "Kinder" [261] actual | expected [244] "Kollegin" | "Kollegin" [277] [245] "Kommunen" | "Kommunen" [278] [246] "Konzept" | "Konzept" [279] - "Konzept" [280] [247] "Kraft" | "Kraft" [281] [248] "Kraft" | "Kraft" [282] [249] "Krise" | "Krise" [283] [250] "Krise" | "Krise" [284] - "Lndern" [285] [251] "Lafontaine" | "Lafontaine" [286] ... ... ... and 7 more ... actual | expected [269] "Naturschutz" | "Naturschutz" [305] [270] "Nicht" | "Nicht" [306] [271] "Norbert" | "Norbert" [307] - "Norbert" [308] [272] "Nur" | "Nur" [309] [273] "Opposition" | "Opposition" [310] [274] "Ordnung" | "Ordnung" [311] [275] "Partei" | "Partei" [312] [276] "Pothmer" | "Pothmer" [313] - "Prsident" [314] ... ... ... and 23 more ... actual | expected [306] "Sie" | "Sie" [350] [307] "Sie" | "Sie" [351] [308] "Sie" | "Sie" [352] - "Sittenwidrige" [353] [309] "So" | "So" [354] [310] "So" | "So" [355] - "Solidaritt" [356] - "Solidaritt" [357] [311] "Spiel" | "Spiel" [358] - "Strke" [359] ... ... ... and 10 more ... actual | expected [326] "Uhl" | "Uhl" [375] [327] "Uhr" | "Uhr" [376] [328] "Umso" | "Umso" [377] - "Vernderung" [378] [329] "Verbraucher" | "Verbraucher" [379] [330] "Versicherten" - "Verfgung" [380] [331] "Vertrag" - "Versicherten" [381] [332] "Vertreter" - "Vertrag" [382] [333] "Von" - "Vertreter" [383] [334] "Vor" - "Von" [384] ... ... ... and 170 more ... actual | expected [515] "der" | "der" [565] [516] "der" | "der" [566] [517] "der" | "der" [567] [518] "des" - "der" [568] [519] "des" - "der" [569] [520] "deshalb" - "der" [570] [521] "deshalb" - "der" [571] [522] "deutlich" - "der" [572] [523] "deutschen" - "der" [573] [524] "deutschen" - "der" [574] ... ... ... and 31 more ... actual | expected [560] "die" | "die" [610] [561] "die" | "die" [611] [562] "die" | "die" [612] [563] "diese" - "die" [613] [564] "diesem" - "die" [614] [565] "dieser" - "die" [615] [566] "dieser" - "die" [616] [567] "dieses" - "die" [617] [568] "dieses" - "die" [618] [569] "dieses" - "die" [619] ... ... ... and 129 more ... actual | expected [640] "gefordert" | "gefordert" [751] [641] "gegeben" | "gegeben" [752] [642] "gegen" | "gegen" [753] - "gehrt" [754] - "gehrt" [755] [643] "geht" | "geht" [756] [644] "gekommen" | "gekommen" [757] [645] "gelesen" | "gelesen" [758] actual | expected [652] "gemacht" | "gemacht" [765] [653] "gemeint" | "gemeint" [766] [654] "genommen" | "genommen" [767] - "gerade" [768] [655] "gerade" | "gerade" [769] [656] "gerecht" | "gerecht" [770] [657] "gerecht" | "gerecht" [771] actual | expected [667] "gibt" | "gibt" [781] [668] "gibt" | "gibt" [782] [669] "globalen" | "globalen" [783] - "groen" [784] [670] "gut" | "gut" [785] - "gut" [786] [671] "gute" | "gute" [787] - "hren" [788] [672] "haben" | "haben" [789] [673] "haben" | "haben" [790] ... ... ... and 1 more ... `actual[719:724]`: "in" "in" "in" "investieren" "ist" "ist" `expected[836:842]`: "in" "in" "in" "insbesondere" "investieren" "ist" "ist" actual | expected [728] "ist" | "ist" [846] [729] "ist" | "ist" [847] [730] "ist" | "ist" [848] - "ist" [849] [731] "jeden" | "jeden" [850] [732] "jeden" | "jeden" [851] [733] "jeder" | "jeder" [852] [734] "jetzt" | "jetzt" [853] [735] "jetzt" | "jetzt" [854] [736] "junge" | "junge" [855] ... ... ... and 5 more ... `actual[742:747]`: "keine" "kommt" "konnten" "legen" "lesen" "letzte" `expected[863:869]`: "keine" "kommt" "konnten" "leben" "legen" "lesen" "letzte" actual | expected [751] "liegen" | "liegen" [873] [752] "liegt" | "liegt" [874] [753] "liegt" | "liegt" [875] - "mchte" [876] - "mglich" [877] - "mglichst" [878] - "mssen" [879] - "mssen" [880] - "mssen" [881] [754] "machen" | "machen" [882] ... ... ... and 5 more ... actual | expected [768] "muss" | "muss" [898] [769] "muss" | "muss" [899] [770] "muss" | "muss" [900] - "nchsten" [901] - "nmlich" [902] - "nmlich" [903] - "nmlich" [904] [771] "nach" | "nach" [905] [772] "nach" | "nach" [906] [773] "neben" | "neben" [907] ... ... ... and 5 more ... `actual[835:840]`: "sich" "sicher" "sicherlich" "sie" "sie" "sie" `expected[971:977]`: "sich" "sicher" "sicherlich" "sie" "sie" "sie" "sie" actual | expected [859] "sollten" | "sollten" [996] [860] "sozialen" | "sozialen" [997] [861] "spricht" | "spricht" [998] - "strker" [999] [862] "stark" | "stark" [1000] [863] "steht" | "steht" [1001] [864] "steht" | "steht" [1002] actual | expected [867] "stellen" | "stellen" [1005] [868] "stellen" | "stellen" [1006] [869] "stellt" | "stellt" [1007] - "stimmt" [1008] - "stoen" [1009] [870] "streiten" | "streiten" [1010] - "trgt" [1011] [871] "tun" | "tun" [1012] [872] "tut" | "tut" [1013] [873] "um" | "um" [1014] `actual[890:895]`: "und" "und" "und" "uns" "uns" "uns" `expected[1031:1038]`: "und" "und" "und" "und" "und" "uns" "uns" "uns" actual | expected [898] "unserer" | "unserer" [1041] [899] "unserer" | "unserer" [1042] [900] "unternehmen" | "unternehmen" [1043] - "untersttzt" [1044] - "vllig" [1045] [901] "vereinbart" | "vereinbart" [1046] [902] "vereinbart" | "vereinbart" [1047] [903] "vereinbart" | "vereinbart" [1048] [904] "vereinbart" | "vereinbart" [1049] [905] "verhindern" | "verhindern" [1050] ... ... ... and 8 more ... actual | expected [918] "von" | "von" [1065] [919] "von" | "von" [1066] [920] "von" | "von" [1067] - "von" [1068] [921] "vor" | "vor" [1069] [922] "voran" | "voran" [1070] [923] "voranbringen" | "voranbringen" [1071] [924] "vorgenommen" | "vorgenommen" [1072] [925] "vorgenommen" | "vorgenommen" [1073] [926] "vorstellen" | "vorstellen" [1074] ... ... ... and 6 more ... `actual[931:936]`: "was" "weg" "weiter" "werden" "werden" "wert" `expected[1082:1088]`: "was" "weg" "weiter" "werden" "werden" "werden" "wert" actual | expected [939] "wie" | "wie" [1091] [940] "wie" | "wie" [1092] [941] "wie" | "wie" [1093] - "wieder" [1094] [942] "will" | "will" [1095] [943] "wir" | "wir" [1096] [944] "wir" | "wir" [1097] [945] "wir" | "wir" [1098] [946] "wir" | "wir" [1099] [947] "wir" | "wir" [1100] ... ... ... and 4 more ... actual | expected [961] "wollen" | "wollen" [1115] [962] "wollen" | "wollen" [1116] [963] "wollen" | "wollen" [1117] - "zahlen" [1118] - "zu" [1119] - "zu" [1120] - "zu" [1121] - "zu" [1122] [964] "zu" | "zu" [1123] [965] "zu" | "zu" [1124] ... ... ... and 1 more ... actual | expected [973] "zu" | "zu" [1132] [974] "zu" | "zu" [1133] [975] "zu" | "zu" [1134] - "zu" [1135] [976] "zugunsten" | "zugunsten" [1136] [977] "zum" | "zum" [1137] [978] "zum" | "zum" [1138] [979] "zur" | "zur" [1139] [980] "zur" | "zur" [1140] - "zurck" [1141] ... ... ... and 2 more ... -- Failure ('test_pmi.R:34:5'): identity of phrase detection of decode-workflow and Cooccurrences workflow -- a_min[["word_2"]] (`actual`) not identical to b_min[["b_word"]] (`expected`). `actual[1:5]`: "Aber" "Dr" "Lieber" "Renate" "So" `expected[1:7]`: "Aber" "Dr" "Fr" "Hrt" "Lieber" "Renate" "So" actual | expected [29] "Naturschutz" | "Naturschutz" [31] [30] "Wachstum" | "Wachstum" [32] [31] "bereits" | "bereits" [33] - "drfen" [34] [32] "denn" | "denn" [35] [33] "eines" | "eines" [36] [34] "erst" | "erst" [37] [35] "gesagt" | "gesagt" [38] [36] "gibt" | "gibt" [39] - "htten" [40] ... ... ... and 16 more ... actual | expected [66] "Darin" | "Darin" [75] [67] "Dennoch" | "Dennoch" [76] [68] "Einige" | "Einige" [77] - "Fnftens" [78] [69] "Gemeinsam" | "Gemeinsam" [79] [70] "Gestern" | "Gestern" [80] [71] "Hans" | "Hans" [81] actual | expected [79] "Oder" | "Oder" [89] [80] "Oskar" | "Oskar" [90] [81] "Renate" | "Renate" [91] - "Schnen" [92] [82] "Schauen" | "Schauen" [93] [83] "Stichwort" | "Stichwort" [94] [84] "Uns" | "Uns" [95] actual | expected [98] "An" | "An" [109] [99] "Ausschuss" | "Ausschuss" [110] [100] "Jawohl" | "Jawohl" [111] - "Natrlich" [112] [101] "Uns" | "Uns" [113] [102] "ein" | "ein" [114] [103] "mehr" | "mehr" [115] - "Hand" [116] - "diesen" [117] [104] "Dazu" | "Dazu" [118] ... ... ... and 8 more ... actual | expected [113] "der" | "der" [128] [114] "im" | "im" [129] [115] "zu" | "zu" [130] - "und" [131] [116] "und" | "und" [132] [117] "da" | "da" [133] [118] "ich" | "ich" [134] [119] "Ost" | "Ost" [135] [120] "ist" | "ist" [136] [121] "der" | "der" [137] ... ... ... and 7 more ... actual | expected [140] "geht" | "geht" [158] [141] "Gegenteil" | "Gegenteil" [159] [142] "Geld" | "Geld" [160] - "knnen" [161] [143] "scheint" | "scheint" [162] - "wrde" [163] [144] "zeigt" | "zeigt" [164] [145] "Sie" | "Sie" [165] [146] "wir" | "wir" [166] actual | expected [148] "werden" | "werden" [168] [149] "brauchen" | "brauchen" [169] [150] "haben" | "haben" [170] - "mssen" [171] [151] "," | "," [172] [152] "wollen" | "wollen" [173] - "fr" [174] [153] "im" | "im" [175] [154] "soll" | "soll" [176] [155] "Bundeswehr" | "Bundeswehr" [177] `actual[166:171]`: "gab" "sollte" "sind" "-" "Renate" "und" `expected[188:194]`: "gab" "sollte" "sind" "von" "-" "Renate" "und" actual | expected [178] "nach" | "nach" [201] [179] "," | "," [202] [180] "Pothmer" | "Pothmer" [203] - "fr" [204] - "Jrgen" [205] - "Zuruf" [206] [181] "mit" | "mit" [207] [182] "unseres" | "unseres" [208] [183] "zur" | "zur" [209] [184] "," | "," [210] ... ... ... and 17 more ... actual | expected [200] "haben" | "haben" [230] [201] "ist" | "ist" [231] [202] "Haus" | "Haus" [232] - "erffne" [233] - "fge" [234] [203] "fordere" | "fordere" [235] [204] "gebe" | "gebe" [236] [205] "gratuliere" | "gratuliere" [237] `actual[223:228]`: "kommt" "wollen" "." ":" "." "im" `expected[255:261]`: "kommt" "wollen" "." "Sie" ":" "." "im" actual | expected [244] "Piltz" | "Piltz" [277] [245] "in" | "in" [278] [246] "der" | "der" [279] - "fr" [280] [247] "," | "," [281] [248] "treten" | "treten" [282] [249] "," | "," [283] [250] "in" | "in" [284] - "." [285] [251] "[" | "[" [286] ... ... ... and 7 more ... actual | expected [269] "und" | "und" [305] [270] "nur" | "nur" [306] [271] "Lammert" | "Lammert" [307] - "Rttgen" [308] [272] "so" | "so" [309] [273] "zu" | "zu" [310] [274] "." | "." [311] [275] "," | "," [312] [276] "," | "," [313] - "," [314] ... ... ... and 15 more ... actual | expected [291] "!" | "!" [332] [292] "-" | "-" [333] [293] "Ihren" | "Ihren" [334] - "drfen" [335] [294] "der" | "der" [336] [295] "einfach" | "einfach" [337] - "gefhrden" [338] [296] "heute" | "heute" [339] - "kndigen" [340] [297] "lassen" | "lassen" [341] ... ... ... and 2 more ... actual | expected [306] "vielleicht" | "vielleicht" [350] [307] "vor" | "vor" [351] [308] "wirklich" | "wirklich" [352] - "Lhne" [353] [309] "viel" | "viel" [354] [310] "wie" | "wie" [355] - "," [356] - "und" [357] [311] "." | "." [358] - "fhren" [359] ... ... ... and 10 more ... actual | expected [327] "." | "." [376] [328] "wichtiger" | "wichtiger" [377] [329] "," | "," [378] [330] "." - "," [379] [331] "von" - "stehen" [380] [332] "der" - "." [381] [333] "den" - "von" [382] [334] "allen" - "der" [383] [335] "an" - "den" [384] [336] "des" - "allen" [385] ... ... ... and 365 more ... `actual[640:645]`: "haben" "," "eine" "nur" "." "." `expected[751:758]`: "haben" "," "eine" "ein" "zu" "nur" "." "." `actual[652:657]`: "und" "ist" "werden" "nicht" "," "zu" `expected[765:771]`: "und" "ist" "werden" "fr" "nicht" "," "zu" actual | expected [667] "in" | "in" [781] [668] "keinen" | "keinen" [782] [669] "Wettbewerb" | "Wettbewerb" [783] - "Herausforderungen" [784] - "fr" [785] [670] "ist" | "ist" [786] [671] "," | "," [787] - "," [788] [672] ";" | ";" [789] [673] "als" | "als" [790] ... ... ... and 1 more ... `actual[719:724]`: "ihren" "jedem" "welchem" "," "also" "auf" `expected[836:842]`: "ihren" "jedem" "welchem" "fr" "," "also" "auf" `actual[726:731]`: "dies" "einfach" "leider" "wie" "zwar" "," `expected[844:850]`: "dies" "einfach" "leider" "nmlich" "wie" "zwar" "," `actual[734:739]`: "auch" "eine" "Menschen" "auch" "das" "mich" `expected[853:860]`: "auch" "eine" "Menschen" "es" "." "auch" "das" "mich" `actual[742:747]`: "neuen" "der" "." "wir" ":" "Woche" `expected[863:869]`: "neuen" "der" "." "knnen" "wir" ":" "Woche" actual | expected [751] "nicht" | "nicht" [873] [752] "," | "," [874] [753] "." | "." [875] - "Sie" [876] - "." [877] - "viel" [878] - "-" [879] - "aber" [880] - "sie" [881] [754] ";" | ";" [882] ... ... ... and 5 more ... actual | expected [768] "endlich" | "endlich" [898] [769] "im" | "im" [899] [770] "und" | "und" [900] - "Wochen" [901] - "den" [902] - "fr" [903] - "nicht" [904] [771] "Ihnen" | "Ihnen" [905] [772] "einem" | "einem" [906] [773] "den" | "den" [907] ... ... ... and 5 more ... `actual[835:840]`: "wie" "sein" "auch" "hat" "heute" "ihre" `expected[971:977]`: "wie" "sein" "auch" "fr" "hat" "heute" "ihre" `actual[859:864]`: "." "Zusammenhalt" "nun" "gemacht" ":" "dazu" `expected[996:1002]`: "." "Zusammenhalt" "nun" "als" "gemacht" ":" "dazu" actual | expected [866] "." | "." [1004] [867] "Sie" | "Sie" [1005] [868] "und" | "und" [1006] - "." [1007] - "fr" [1008] [869] "." | "." [1009] [870] "." | "." [1010] - "." [1011] [871] "?" | "?" [1012] [872] "mir" | "mir" [1013] ... ... ... and 1 more ... actual | expected [880] "Reaktorsicherheit" | "Reaktorsicherheit" [1021] [881] "als" | "als" [1022] [882] "anderswo" | "anderswo" [1023] - "drfen" [1024] [883] "da" | "da" [1025] [884] "dieser" | "dieser" [1026] [885] "einer" | "einer" [1027] - "mssen" [1028] [886] "mittlere" | "mittlere" [1029] [887] "nach" | "nach" [1030] ... ... ... and 1 more ... actual | expected [898] "Koalitionsvereinbarung" | "Koalitionsvereinbarung" [1041] [899] "Verfassung" | "Verfassung" [1042] [900] "," | "," [1043] - "." [1044] - "klar" [1045] [901] "," | "," [1046] [902] "." | "." [1047] [903] "haben" | "haben" [1048] [904] "worden" | "worden" [1049] - "." [1050] ... ... ... and 14 more ... `actual[924:929]`: "," "." "," "bei" "eine" "jetzt" `expected[1072:1080]`: "," "." "," "auch" "die" "die" "bei" "eine" "jetzt" actual | expected [933] "als" | "als" [1084] [934] "!" | "!" [1085] [935] "deshalb" | "deshalb" [1086] - "prfen" [1087] [936] "." | "." [1088] [937] "ist" | "ist" [1089] [938] "Signal" | "Signal" [1090] [939] "sich" | "sich" [1091] [940] "viel" | "viel" [1092] [941] "weit" | "weit" [1093] ... ... ... and 10 more ... actual | expected [961] "einen" | "einen" [1115] [962] "in" | "in" [1116] [963] "nicht" | "nicht" [1117] - "mssen" [1118] - "berwinden" [1119] [964] "Ende" | "Ende" [1120] [965] "arbeiten" | "arbeiten" [1121] [966] "beteiligen" | "beteiligen" [1122] [967] "bleiben" | "bleiben" [1123] [968] "entlasten" | "entlasten" [1124] ... ... ... and 12 more ... `actual[979:982]`: "Kurzarbeit" "Stabilisierung" "," "in" `expected[1139:1143]`: "Kurzarbeit" "Stabilisierung" "," "," "in" -- Error ('test_subcorpus.R:55:5'): generate subcorpus ------------------------- Error in `UseMethod("size")`: no applicable method for 'size' applied to an object of class "NULL" Backtrace: x 1. +-testthat::expect_identical(size(p), size(sc)) at test_subcorpus.R:55:5 2. | \-testthat::quasi_label(enquo(expected), expected.label, arg = "expected") 3. | \-rlang::eval_bare(expr, quo_get_env(quo)) 4. +-polmineR::size(sc) 5. \-polmineR::size(sc) [ FAIL 7 | WARN 48926 | SKIP 18 | PASS 684 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE See '/tmp/th798/26770135/R-release/1055/polmineR.Rcheck/00check.log' for details. [1] "2026-02-02 14:58:30 MST" [1] "2026-02-02 14:58:30 MST" Installing package into '/tmp/th798/26770135/R-release/1055/library' (as 'lib' is unspecified) Warning: invalid package '/scratch/th798/data.table-revdeps/2026-02-02/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz' Error: ERROR: no packages specified [1] "2026-02-02 14:58:30 MST" * using log directory '/tmp/th798/26770135/R-release/1055/polmineR.Rcheck' * using R version 4.5.2 (2025-10-31) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Spack GCC) 12.2.0 GNU Fortran (Spack GCC) 12.2.0 * running under: Red Hat Enterprise Linux 8.10 (Ootpa) * using session charset: ASCII * checking for file 'polmineR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'polmineR' version '0.8.9' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 'polmineR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: 'hits.R' 'size.R' 'utils.R' * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(polmineR) WARNING: The locale of the R session is 'C': The character set is not specified. You may encounter problems when working with corpora with a latin-1 or UTF-8 encoding that include special characters. polmineR is throttled to use 2 cores as required by CRAN Repository Policy. To get full performance: * Use `n_cores <- parallel::detectCores()` to detect the number of cores available on your machine * Set number of cores using `options('polmineR.cores' = n_cores - 1)` and `data.table::setDTthreads(n_cores - 1)` Attaching package: 'polmineR' The following object is masked from 'package:testthat': context The following object is masked from 'package:base': use > use("polmineR") v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) > > test_check("polmineR") v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS i get token ids v get token ids [33ms] i get struc ids v get struc ids [75ms] i drop tokens outside strucs v drop tokens outside strucs [62ms] i get unique s-attribute values v get unique s-attribute values [338ms] i counting token per doc v counting token per doc [268ms] i decode strucs v decode strucs [31ms] i decode and recode token ids v decode and recode token ids [32ms] i adjust ids v adjust ids [32ms] i generate simple_triplet_matrix v generate simple_triplet_matrix [30ms] i get token ids v get token ids [69ms] i get struc ids v get struc ids [74ms] i drop tokens outside strucs v drop tokens outside strucs [43ms] i get unique s-attribute values v get unique s-attribute values [35ms] i generate unique document ids v generate unique document ids [133ms] i counting token per doc v counting token per doc [75ms] i decode tokens and generate factor v decode tokens and generate factor [93ms] i prepare row and column labels v prepare row and column labels [41ms] i generate simple_triplet_matrix v generate simple_triplet_matrix [46ms] i generating document ids v generating document ids ... done i getting ids v getting ids ... done i performing count v performing count ... done i decoding token ids v decoding token ids ... done i generating keys v generating keys ... done i generating simple triplet matrix v generating simple triplet matrix ... done i generating document ids v generating document ids ... done i getting ids v getting ids ... done i performing count v performing count ... done i decoding token ids v decoding token ids ... done i generating keys v generating keys ... done i generating simple triplet matrix v generating simple triplet matrix ... done i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [22ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [93ms] i assign names v assign names [13ms] i convert partition_bundle to `TermDocumentMatrix` i using p-attribute word i convert partition_bundle to `TermDocumentMatrix` i create temporary data.table v create temporary data.table ... done i convert partition_bundle to `TermDocumentMatrix` i assign keys to data.table v assign keys to data.table ... done i convert partition_bundle to `TermDocumentMatrix` i make unique keys v make unique keys ... done i convert partition_bundle to `TermDocumentMatrix` i run garbage collection v run garbage collection ... done i convert partition_bundle to `TermDocumentMatrix` i create TermDocumentMatrix v create TermDocumentMatrix ... done i convert partition_bundle to `TermDocumentMatrix` v convert partition_bundle to `TermDocumentMatrix` ... done i converting `TermDocumentMatrix` to `Matrix` v converting `TermDocumentMatrix` to `Matrix` ... done i convert partition_bundle to `TermDocumentMatrix` i using p-attribute word i convert partition_bundle to `TermDocumentMatrix` i create temporary data.table v create temporary data.table ... done i convert partition_bundle to `TermDocumentMatrix` i assign keys to data.table v assign keys to data.table ... done i convert partition_bundle to `TermDocumentMatrix` i make unique keys v make unique keys ... done i convert partition_bundle to `TermDocumentMatrix` i run garbage collection v run garbage collection ... done i convert partition_bundle to `TermDocumentMatrix` i create TermDocumentMatrix v create TermDocumentMatrix ... done i convert partition_bundle to `TermDocumentMatrix` v convert partition_bundle to `TermDocumentMatrix` ... done i converting `TermDocumentMatrix` to `Matrix` v converting `TermDocumentMatrix` to `Matrix` ... done i get token ids v get token ids [67ms] i get struc ids v get struc ids [69ms] i drop tokens outside strucs v drop tokens outside strucs [38ms] i get unique s-attribute values v get unique s-attribute values [31ms] i generate unique document ids v generate unique document ids [140ms] i counting token per doc v counting token per doc [75ms] i decode tokens and generate factor v decode tokens and generate factor [96ms] i prepare row and column labels v prepare row and column labels [42ms] i generate simple_triplet_matrix v generate simple_triplet_matrix [32ms] v corpus loaded: REUTERS v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs i distinct dates: 2 i subsetting by date i bundle class: subcorpus_bundle i subsetting by date i objects in bundle: plpr_subcorpus i subsetting by date i s-attribute for splitting ("date") is sibling of s-attribute "date" i subsetting by date i s-attribute "date" has values: yes i subsetting by date i get list of regions v get list of regions [17ms] i subsetting by date i instantiate 2 plpr_subcorpus objects v instantiate 2 plpr_subcorpus objects [52ms] i subsetting by date v subsetting by date [191ms] i generating speeches i generating names v generating names [339ms] i reorder objects v reorder objects [32ms] i coercing partitions to plpr_subcorpus v coercing partitions to plpr_subcorpus [206ms] ... get cpos and strucs i distinct dates detected: 1 i generating speeches v generating speeches [670ms] i generating names v generating names [89ms] i reordering partitions v reordering partitions [32ms] i coercing partitions to plpr_partitions v coercing partitions to plpr_partitions [31ms] i using p-attribute word i create temporary data.table v create temporary data.table ... done i assign keys to data.table v assign keys to data.table ... done i make unique keys v make unique keys ... done i run garbage collection v run garbage collection ... done i create TermDocumentMatrix v create TermDocumentMatrix ... done i using p-attribute word i create temporary data.table v create temporary data.table ... done i assign keys to data.table v assign keys to data.table ... done i make unique keys v make unique keys ... done i run garbage collection v run garbage collection ... done i create TermDocumentMatrix v create TermDocumentMatrix ... done x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. v corpus loaded: REUTERS v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs ... getting counts for p-attribute(s): word v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ... no hits for query: asdfasdf ... get cpos and strucs ... no hits for query: asdfasdf ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos ... update count statistics for slot cpos v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ... no hits for query: asdfasdf ... get cpos and strucs ... no hits for query: asdfasdf v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... creating data.table with corpus positions ... adding tokens ... generating phrases ... counting ... creating bundle of count objects v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) i decoding p-attribute: word v decoding p-attribute: word [203ms] i decoding p-attribute: pos v decoding p-attribute: pos [152ms] i decoding s-attribute: interjection v decoding s-attribute: interjection [216ms] i decoding s-attribute: date v decoding s-attribute: date [220ms] i decoding s-attribute: party v decoding s-attribute: party [246ms] i decoding s-attribute: speaker v decoding s-attribute: speaker [266ms] i decoding s-attribute: protocol_date v decoding s-attribute: protocol_date [187ms] i decoding s-attribute: protocol_lp v decoding s-attribute: protocol_lp [173ms] i decoding s-attribute: role v decoding s-attribute: role [195ms] i assembling data.table v assembling data.table [42ms] i decoding p-attribute: word v decoding p-attribute: word [219ms] i decoding s-attribute: party v decoding s-attribute: party [209ms] i assembling data.table v assembling data.table [16ms] i decoding p-attribute: word v decoding p-attribute: word [204ms] i assembling data.table v assembling data.table [15ms] i decoding p_attribute "word" v decoding p_attribute "word" [73ms] v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS v corpus loaded: UNGA ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [15ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [26ms] i assign names v assign names [14ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word i coercion to `partition_bundle` class v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ... combining frequency lists ... statistical test: chisquare ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ... combining frequency lists ... statistical test: chisquare v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ... get cpos and strucs v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ... get cpos and strucs i s-attribute "date" has values: yes i get regions and get values v get regions and get values [20ms] i instantiate objects (n = 5) v instantiate objects (n = 5) [22ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "places" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 11) v instantiate objects (n = 11) [24ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [26ms] i assign names v assign names [13ms] v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i getting sizes ... getting sizes ! corpus loaded multiple times with following registries: i getting sizes * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp i getting sizes * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i getting sizes i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i getting sizes v getting sizes [48ms] i calculate frequencies v calculate frequencies [14ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' No hits for query: asdfasdf ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' No hits for query: "asdfasdfasdfasd.*" ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting corpus positions ... number of hits: 21 ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... checking that all p-attributes are available ... already present - skip getting ids for p-attribute: word ... generating contexts ... getting corpus positions ... number of hits: 7 ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... checking that all p-attributes are available ... already present - skip getting ids for p-attribute: word ... generating contexts ... getting corpus positions ... no hits for query: asdfasdf ... no matches for query (or no matches left after applying stoplist/positivelist) ... getting corpus positions ... no matches for query (or no matches left after applying stoplist/positivelist) ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... dropping nodes ... counting tokens in context ... creating new index for hits ... creating new index for tokens ... putting together matrix ... filtering by positivelist i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "date" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [16ms] i instantiate 37 plpr_subcorpus objects v instantiate 37 plpr_subcorpus objects [32ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [21ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [48ms] i assign names v assign names [13ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [21ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [48ms] i assign names v assign names [14ms] ... get cpos and strucs i bundle class: partition_bundle i objects in bundle: plpr_partition i s-attribute for splitting ("speaker") is sibling of s-attribute "interjection" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [18ms] i instantiate 124 plpr_partition objects v instantiate 124 plpr_partition objects [52ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "interjection" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [18ms] i instantiate 124 plpr_subcorpus objects v instantiate 124 plpr_subcorpus objects [51ms] v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS i s-attributes are not siblings, get relationship v s-attributes are not siblings, get relationship [18ms] i s-attributes not ordered according to tree structure (inefficient) i decode s-attribute "party" v decode s-attribute "party" [44ms] i merge corpus position results for s-attribute "party" v merge corpus position results for s-attribute "protocol_date" [114ms] i decode s-attribute "protocol_date" v decode s-attribute "protocol_date" [64ms] i merge corpus position results for s-attribute "protocol_date" v merge corpus position results for s-attribute "speaker" [115ms] i decode s-attribute "speaker" v decode s-attribute "speaker" [71ms] i merge corpus position results for s-attribute "speaker" v merge corpus position results for s-attribute "speaker" [940ms] i aggregate results and get sizes v aggregate results and get sizes [73ms] i s-attributes are not siblings, get relationship v s-attributes are not siblings, get relationship [18ms] i order of s-attributes starts with deep descendents i get regions for s-attribute "party" v get regions for s-attribute "party" [27ms] i get values for s-attribute "speaker" v get values for s-attribute "protocol_date" [53ms] i get values for s-attribute "protocol_date" v get values for s-attribute "protocol_date" [51ms] i aggregate region sizes v aggregate region sizes [40ms] i aggregate results and get sizes v aggregate results and get sizes [16ms] ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [22ms] i keep only matches for 3 values provided v keep only matches for 3 values provided [17ms] i instantiate objects (n = 3) v instantiate objects (n = 3) [22ms] i assign names v assign names [13ms] x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is descendent of s-attribute "protocol_date" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [17ms] i instantiate 37 plpr_subcorpus objects v instantiate 37 plpr_subcorpus objects [33ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "date" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [17ms] i instantiate 37 plpr_subcorpus objects v instantiate 37 plpr_subcorpus objects [32ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [22ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [47ms] i assign names v assign names [13ms] x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS v corpus loaded: REUTERS v corpus loaded: UNGA ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: REUTERS v corpus loaded: UNGA v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... get cpos and strucs ... get cpos and strucs ... get cpos and strucs ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i Cannot map s-attributes and types ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i Cannot map s-attributes and types ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i Cannot map s-attributes and types Error in .checkTypos(e, names_x) : Object 'foo' not found amongst [struc, cpos_left, cpos_right, id] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i Cannot map s-attributes and types x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [15ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] i generating document ids v generating document ids ... done i getting ids v getting ids ... done i performing count v performing count ... done i decoding token ids v decoding token ids ... done i generating keys v generating keys ... done i generating simple triplet matrix v generating simple triplet matrix ... done ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] i using p-attribute word i create temporary data.table v create temporary data.table ... done i assign keys to data.table v assign keys to data.table ... done i make unique keys v make unique keys ... done i run garbage collection v run garbage collection ... done i create TermDocumentMatrix v create TermDocumentMatrix ... done ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [26ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [24ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "speaker" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [15ms] i instantiate 2 plpr_subcorpus objects v instantiate 2 plpr_subcorpus objects [25ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [22ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [47ms] i assign names v assign names [13ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [21ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [47ms] i assign names v assign names [13ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [21ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [47ms] i assign names v assign names [13ms] ... preparing struc table ... now performing counts ... finalizing tables i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "interjection" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [18ms] i instantiate 124 plpr_subcorpus objects v instantiate 124 plpr_subcorpus objects [51ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "date" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [29ms] i instantiate 77 plpr_subcorpus objects v instantiate 77 plpr_subcorpus objects [40ms] ... get cpos and strucs i bundle class: partition_bundle i objects in bundle: plpr_partition i s-attribute for splitting ("speaker") is sibling of s-attribute "date" i s-attribute "speaker" has values: yes i get list of regions v get list of regions [16ms] i instantiate 77 plpr_partition objects v instantiate 77 plpr_partition objects [41ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("date") is sibling of s-attribute "interjection" i s-attribute "date" has values: yes i get list of regions v get list of regions [18ms] i instantiate 5 plpr_subcorpus objects v instantiate 5 plpr_subcorpus objects [28ms] ... get cpos and strucs i bundle class: partition_bundle i objects in bundle: plpr_partition i s-attribute for splitting ("date") is sibling of s-attribute "interjection" i s-attribute "date" has values: yes i get list of regions v get list of regions [17ms] i instantiate 5 plpr_partition objects v instantiate 5 plpr_partition objects [27ms] i s-attribute "date" has values: yes i get regions and get values v get regions and get values [23ms] i instantiate objects (n = 5) v instantiate objects (n = 5) [26ms] i assign names v assign names [15ms] i s-attribute "date" has values: yes i get regions and get values v get regions and get values [22ms] i instantiate objects (n = 5) v instantiate objects (n = 5) [26ms] i assign names v assign names [15ms] i s-attribute "protocol_date" has values: yes i get regions and get values v get regions and get values [16ms] i instantiate objects (n = 5) v instantiate objects (n = 5) [25ms] i assign names v assign names [15ms] i split by s-attribute "protocol_date" i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("protocol_date") is ancestor of s-attribute "speaker" i s-attribute "protocol_date" has values: yes i get list of regions v get list of regions [17ms] i instantiate 2 plpr_subcorpus objects v instantiate 2 plpr_subcorpus objects [29ms] i objects in bundle after subsetting is 2 (3 less than before) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ... get cpos and strucs ... getting counts for p-attribute(s): word v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: REUTERS v corpus loaded: UNGA ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... applying stoplist ... number of hits dropped due to stoplist: 13 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... filtering by positivelist ... number of hits dropped due to positivelist: 65 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... new number of hits: 12 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... checking that all p-attributes are available ... already present - skip getting ids for p-attribute: word ... decode p-attribute: word ... new number of hits: 12 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' [ FAIL 7 | WARN 48926 | SKIP 18 | PASS 684 ] == Skipped tests (18) ========================================================== * On CRAN (10): 'test_as.data.table.R:9:5', 'test_as.markdown.R:13:5', 'test_as.markdown.R:73:5', 'test_cooccurrences.R:96:5', 'test_cooccurrences.R:167:5', 'test_dispersion.R:43:5', 'test_get_token_stream.R:100:5', 'test_get_token_stream.R:138:5', 'test_html.R:9:5', 'test_subcorpus_bundle.R:187:5' * empty test (2): 'test_count.R:125:1', 'test_subcorpus.R:198:1' * knowingly not working (1): 'test_as.speeches.R:46:5' * use("GermaParl2") is not TRUE (5): 'test_as.speeches.R:86:5', 'test_hits.R:26:5', 'test_split.R:35:5', 'test_split.R:83:5', 'test_subcorpus.R:159:5' == Failed tests ================================================================ -- Failure ('test_chisquare.R:38:7'): check chisquare computation -------------- `chisquare_value_selfmade` (`actual`) not equal to `chisquare_value_fn` (`expected`). `actual`: Inf `expected`: 56 -- Failure ('test_get_token_stream.R:88:5'): get_token_stream()-method for matrix input -- nchar(ts_rm) (`actual`) not identical to 159L (`expected`). `actual`: 154 `expected`: 159 -- Failure ('test_get_token_stream.R:131:5'): --------------------------------- nchar(y) (`actual`) not identical to 51328L (`expected`). `actual`: 47081 `expected`: 51328 -- Failure ('test_pmi.R:32:5'): identity of phrase detection of decode-workflow and Cooccurrences workflow -- nrow(a_min) (`actual`) not identical to nrow(b_min) (`expected`). `actual`: 982 `expected`: 1143 -- Failure ('test_pmi.R:33:5'): identity of phrase detection of decode-workflow and Cooccurrences workflow -- a_min[["word_1"]] (`actual`) not identical to b_min[["a_word"]] (`expected`). `actual[4:9]`: "!" "!" "!" "\"" "\"" "\"" `expected[4:11]`: "!" "!" "!" "!" "!" "\"" "\"" "\"" `actual[24:29]`: ")" ")" ")" "," "," "," `expected[26:32]`: ")" ")" ")" "," "," "," "," `actual[44:49]`: "," "," "," "-" and 2 more... `expected[47:58]`: "," "," "," "," "," "," "," "," "," "-" ... `actual[55:60]`: "-" "-" "-" "." "." "." `expected[64:71]`: "-" "-" "-" "." "." "." "." "." actual | expected [101] ":" | ":" [112] [102] ":" | ":" [113] [103] ":" | ":" [114] - ":" [115] - "ffentlichen" [116] - "ber" [117] [104] "?" | "?" [118] [105] "?" | "?" [119] [106] "?" | "?" [120] [107] "?" | "?" [121] ... ... ... and 6 more ... actual | expected [114] "Arbeit" | "Arbeit" [129] [115] "Arbeit" | "Arbeit" [130] [116] "Arbeitnehmer" | "Arbeitnehmer" [131] - "Arbeitspltze" [132] [117] "Auch" | "Auch" [133] [118] "Auch" | "Auch" [134] [119] "Aufbau" | "Aufbau" [135] [120] "Aufgabe" | "Aufgabe" [136] [121] "Auswirkungen" | "Auswirkungen" [137] - "Brger" [138] ... ... ... and 5 more ... `actual[138:143]`: "Dann" "Darf" "Darum" "Das" "Das" "Das" `expected[156:163]`: "Dann" "Darf" "Darum" "Das" "Das" "Das" "Das" "Das" actual | expected [148] "Dazu" | "Dazu" [168] [149] "Deshalb" | "Deshalb" [169] [150] "Deshalb" | "Deshalb" [170] - "Deshalb" [171] [151] "Deswegen" | "Deswegen" [172] [152] "Deswegen" | "Deswegen" [173] - "Deutschland" [174] [153] "Deutschland" | "Deutschland" [175] [154] "Deutschland" | "Deutschland" [176] [155] "Die" | "Die" [177] `actual[166:171]`: "Es" "Es" "Euro" "FDP" "FDP" "Familie" `expected[188:194]`: "Es" "Es" "Euro" "Flle" "FDP" "FDP" "Familie" actual | expected [178] "Frage" | "Frage" [201] [179] "Fragen" | "Fragen" [202] [180] "Frau" | "Frau" [203] - "Freiheit" [204] - "GRNEN" [205] - "GRNEN" [206] [181] "Gemeinsam" | "Gemeinsam" [207] [182] "Geschichte" | "Geschichte" [208] [183] "Gesetz" | "Gesetz" [209] [184] "Gesundheit" | "Gesundheit" [210] ... ... ... and 10 more ... `actual[196:201]`: "Herr" "Herr" "Herr" "Hier" "Hier" "Hier" `expected[225:231]`: "Herr" "Herr" "Herr" "Herr" "Hier" "Hier" "Hier" `actual[205:210]`: "Ich" "Ich" "Ich" "Ideen" "Ihnen" "Ihnen" `expected[235:242]`: "Ich" "Ich" "Ich" "Ich" "Ich" "Ideen" "Ihnen" "Ihnen" actual | expected [223] "Jetzt" | "Jetzt" [255] [224] "Jetzt" | "Jetzt" [256] [225] "Jung" | "Jung" [257] - "Knnen" [258] [226] "Kauder" | "Kauder" [259] [227] "Kinder" | "Kinder" [260] [228] "Kinder" | "Kinder" [261] actual | expected [244] "Kollegin" | "Kollegin" [277] [245] "Kommunen" | "Kommunen" [278] [246] "Konzept" | "Konzept" [279] - "Konzept" [280] [247] "Kraft" | "Kraft" [281] [248] "Kraft" | "Kraft" [282] [249] "Krise" | "Krise" [283] [250] "Krise" | "Krise" [284] - "Lndern" [285] [251] "Lafontaine" | "Lafontaine" [286] ... ... ... and 7 more ... actual | expected [269] "Naturschutz" | "Naturschutz" [305] [270] "Nicht" | "Nicht" [306] [271] "Norbert" | "Norbert" [307] - "Norbert" [308] [272] "Nur" | "Nur" [309] [273] "Opposition" | "Opposition" [310] [274] "Ordnung" | "Ordnung" [311] [275] "Partei" | "Partei" [312] [276] "Pothmer" | "Pothmer" [313] - "Prsident" [314] ... ... ... and 23 more ... actual | expected [306] "Sie" | "Sie" [350] [307] "Sie" | "Sie" [351] [308] "Sie" | "Sie" [352] - "Sittenwidrige" [353] [309] "So" | "So" [354] [310] "So" | "So" [355] - "Solidaritt" [356] - "Solidaritt" [357] [311] "Spiel" | "Spiel" [358] - "Strke" [359] ... ... ... and 10 more ... actual | expected [326] "Uhl" | "Uhl" [375] [327] "Uhr" | "Uhr" [376] [328] "Umso" | "Umso" [377] - "Vernderung" [378] [329] "Verbraucher" | "Verbraucher" [379] [330] "Versicherten" - "Verfgung" [380] [331] "Vertrag" - "Versicherten" [381] [332] "Vertreter" - "Vertrag" [382] [333] "Von" - "Vertreter" [383] [334] "Vor" - "Von" [384] ... ... ... and 170 more ... actual | expected [515] "der" | "der" [565] [516] "der" | "der" [566] [517] "der" | "der" [567] [518] "des" - "der" [568] [519] "des" - "der" [569] [520] "deshalb" - "der" [570] [521] "deshalb" - "der" [571] [522] "deutlich" - "der" [572] [523] "deutschen" - "der" [573] [524] "deutschen" - "der" [574] ... ... ... and 31 more ... actual | expected [560] "die" | "die" [610] [561] "die" | "die" [611] [562] "die" | "die" [612] [563] "diese" - "die" [613] [564] "diesem" - "die" [614] [565] "dieser" - "die" [615] [566] "dieser" - "die" [616] [567] "dieses" - "die" [617] [568] "dieses" - "die" [618] [569] "dieses" - "die" [619] ... ... ... and 129 more ... actual | expected [640] "gefordert" | "gefordert" [751] [641] "gegeben" | "gegeben" [752] [642] "gegen" | "gegen" [753] - "gehrt" [754] - "gehrt" [755] [643] "geht" | "geht" [756] [644] "gekommen" | "gekommen" [757] [645] "gelesen" | "gelesen" [758] actual | expected [652] "gemacht" | "gemacht" [765] [653] "gemeint" | "gemeint" [766] [654] "genommen" | "genommen" [767] - "gerade" [768] [655] "gerade" | "gerade" [769] [656] "gerecht" | "gerecht" [770] [657] "gerecht" | "gerecht" [771] actual | expected [667] "gibt" | "gibt" [781] [668] "gibt" | "gibt" [782] [669] "globalen" | "globalen" [783] - "groen" [784] [670] "gut" | "gut" [785] - "gut" [786] [671] "gute" | "gute" [787] - "hren" [788] [672] "haben" | "haben" [789] [673] "haben" | "haben" [790] ... ... ... and 1 more ... `actual[719:724]`: "in" "in" "in" "investieren" "ist" "ist" `expected[836:842]`: "in" "in" "in" "insbesondere" "investieren" "ist" "ist" actual | expected [728] "ist" | "ist" [846] [729] "ist" | "ist" [847] [730] "ist" | "ist" [848] - "ist" [849] [731] "jeden" | "jeden" [850] [732] "jeden" | "jeden" [851] [733] "jeder" | "jeder" [852] [734] "jetzt" | "jetzt" [853] [735] "jetzt" | "jetzt" [854] [736] "junge" | "junge" [855] ... ... ... and 5 more ... `actual[742:747]`: "keine" "kommt" "konnten" "legen" "lesen" "letzte" `expected[863:869]`: "keine" "kommt" "konnten" "leben" "legen" "lesen" "letzte" actual | expected [751] "liegen" | "liegen" [873] [752] "liegt" | "liegt" [874] [753] "liegt" | "liegt" [875] - "mchte" [876] - "mglich" [877] - "mglichst" [878] - "mssen" [879] - "mssen" [880] - "mssen" [881] [754] "machen" | "machen" [882] ... ... ... and 5 more ... actual | expected [768] "muss" | "muss" [898] [769] "muss" | "muss" [899] [770] "muss" | "muss" [900] - "nchsten" [901] - "nmlich" [902] - "nmlich" [903] - "nmlich" [904] [771] "nach" | "nach" [905] [772] "nach" | "nach" [906] [773] "neben" | "neben" [907] ... ... ... and 5 more ... `actual[835:840]`: "sich" "sicher" "sicherlich" "sie" "sie" "sie" `expected[971:977]`: "sich" "sicher" "sicherlich" "sie" "sie" "sie" "sie" actual | expected [859] "sollten" | "sollten" [996] [860] "sozialen" | "sozialen" [997] [861] "spricht" | "spricht" [998] - "strker" [999] [862] "stark" | "stark" [1000] [863] "steht" | "steht" [1001] [864] "steht" | "steht" [1002] actual | expected [867] "stellen" | "stellen" [1005] [868] "stellen" | "stellen" [1006] [869] "stellt" | "stellt" [1007] - "stimmt" [1008] - "stoen" [1009] [870] "streiten" | "streiten" [1010] - "trgt" [1011] [871] "tun" | "tun" [1012] [872] "tut" | "tut" [1013] [873] "um" | "um" [1014] `actual[890:895]`: "und" "und" "und" "uns" "uns" "uns" `expected[1031:1038]`: "und" "und" "und" "und" "und" "uns" "uns" "uns" actual | expected [898] "unserer" | "unserer" [1041] [899] "unserer" | "unserer" [1042] [900] "unternehmen" | "unternehmen" [1043] - "untersttzt" [1044] - "vllig" [1045] [901] "vereinbart" | "vereinbart" [1046] [902] "vereinbart" | "vereinbart" [1047] [903] "vereinbart" | "vereinbart" [1048] [904] "vereinbart" | "vereinbart" [1049] [905] "verhindern" | "verhindern" [1050] ... ... ... and 8 more ... actual | expected [918] "von" | "von" [1065] [919] "von" | "von" [1066] [920] "von" | "von" [1067] - "von" [1068] [921] "vor" | "vor" [1069] [922] "voran" | "voran" [1070] [923] "voranbringen" | "voranbringen" [1071] [924] "vorgenommen" | "vorgenommen" [1072] [925] "vorgenommen" | "vorgenommen" [1073] [926] "vorstellen" | "vorstellen" [1074] ... ... ... and 6 more ... `actual[931:936]`: "was" "weg" "weiter" "werden" "werden" "wert" `expected[1082:1088]`: "was" "weg" "weiter" "werden" "werden" "werden" "wert" actual | expected [939] "wie" | "wie" [1091] [940] "wie" | "wie" [1092] [941] "wie" | "wie" [1093] - "wieder" [1094] [942] "will" | "will" [1095] [943] "wir" | "wir" [1096] [944] "wir" | "wir" [1097] [945] "wir" | "wir" [1098] [946] "wir" | "wir" [1099] [947] "wir" | "wir" [1100] ... ... ... and 4 more ... actual | expected [961] "wollen" | "wollen" [1115] [962] "wollen" | "wollen" [1116] [963] "wollen" | "wollen" [1117] - "zahlen" [1118] - "zu" [1119] - "zu" [1120] - "zu" [1121] - "zu" [1122] [964] "zu" | "zu" [1123] [965] "zu" | "zu" [1124] ... ... ... and 1 more ... actual | expected [973] "zu" | "zu" [1132] [974] "zu" | "zu" [1133] [975] "zu" | "zu" [1134] - "zu" [1135] [976] "zugunsten" | "zugunsten" [1136] [977] "zum" | "zum" [1137] [978] "zum" | "zum" [1138] [979] "zur" | "zur" [1139] [980] "zur" | "zur" [1140] - "zurck" [1141] ... ... ... and 2 more ... -- Failure ('test_pmi.R:34:5'): identity of phrase detection of decode-workflow and Cooccurrences workflow -- a_min[["word_2"]] (`actual`) not identical to b_min[["b_word"]] (`expected`). `actual[1:5]`: "Aber" "Dr" "Lieber" "Renate" "So" `expected[1:7]`: "Aber" "Dr" "Fr" "Hrt" "Lieber" "Renate" "So" actual | expected [29] "Naturschutz" | "Naturschutz" [31] [30] "Wachstum" | "Wachstum" [32] [31] "bereits" | "bereits" [33] - "drfen" [34] [32] "denn" | "denn" [35] [33] "eines" | "eines" [36] [34] "erst" | "erst" [37] [35] "gesagt" | "gesagt" [38] [36] "gibt" | "gibt" [39] - "htten" [40] ... ... ... and 16 more ... actual | expected [66] "Darin" | "Darin" [75] [67] "Dennoch" | "Dennoch" [76] [68] "Einige" | "Einige" [77] - "Fnftens" [78] [69] "Gemeinsam" | "Gemeinsam" [79] [70] "Gestern" | "Gestern" [80] [71] "Hans" | "Hans" [81] actual | expected [79] "Oder" | "Oder" [89] [80] "Oskar" | "Oskar" [90] [81] "Renate" | "Renate" [91] - "Schnen" [92] [82] "Schauen" | "Schauen" [93] [83] "Stichwort" | "Stichwort" [94] [84] "Uns" | "Uns" [95] actual | expected [98] "An" | "An" [109] [99] "Ausschuss" | "Ausschuss" [110] [100] "Jawohl" | "Jawohl" [111] - "Natrlich" [112] [101] "Uns" | "Uns" [113] [102] "ein" | "ein" [114] [103] "mehr" | "mehr" [115] - "Hand" [116] - "diesen" [117] [104] "Dazu" | "Dazu" [118] ... ... ... and 8 more ... actual | expected [113] "der" | "der" [128] [114] "im" | "im" [129] [115] "zu" | "zu" [130] - "und" [131] [116] "und" | "und" [132] [117] "da" | "da" [133] [118] "ich" | "ich" [134] [119] "Ost" | "Ost" [135] [120] "ist" | "ist" [136] [121] "der" | "der" [137] ... ... ... and 7 more ... actual | expected [140] "geht" | "geht" [158] [141] "Gegenteil" | "Gegenteil" [159] [142] "Geld" | "Geld" [160] - "knnen" [161] [143] "scheint" | "scheint" [162] - "wrde" [163] [144] "zeigt" | "zeigt" [164] [145] "Sie" | "Sie" [165] [146] "wir" | "wir" [166] actual | expected [148] "werden" | "werden" [168] [149] "brauchen" | "brauchen" [169] [150] "haben" | "haben" [170] - "mssen" [171] [151] "," | "," [172] [152] "wollen" | "wollen" [173] - "fr" [174] [153] "im" | "im" [175] [154] "soll" | "soll" [176] [155] "Bundeswehr" | "Bundeswehr" [177] `actual[166:171]`: "gab" "sollte" "sind" "-" "Renate" "und" `expected[188:194]`: "gab" "sollte" "sind" "von" "-" "Renate" "und" actual | expected [178] "nach" | "nach" [201] [179] "," | "," [202] [180] "Pothmer" | "Pothmer" [203] - "fr" [204] - "Jrgen" [205] - "Zuruf" [206] [181] "mit" | "mit" [207] [182] "unseres" | "unseres" [208] [183] "zur" | "zur" [209] [184] "," | "," [210] ... ... ... and 17 more ... actual | expected [200] "haben" | "haben" [230] [201] "ist" | "ist" [231] [202] "Haus" | "Haus" [232] - "erffne" [233] - "fge" [234] [203] "fordere" | "fordere" [235] [204] "gebe" | "gebe" [236] [205] "gratuliere" | "gratuliere" [237] `actual[223:228]`: "kommt" "wollen" "." ":" "." "im" `expected[255:261]`: "kommt" "wollen" "." "Sie" ":" "." "im" actual | expected [244] "Piltz" | "Piltz" [277] [245] "in" | "in" [278] [246] "der" | "der" [279] - "fr" [280] [247] "," | "," [281] [248] "treten" | "treten" [282] [249] "," | "," [283] [250] "in" | "in" [284] - "." [285] [251] "[" | "[" [286] ... ... ... and 7 more ... actual | expected [269] "und" | "und" [305] [270] "nur" | "nur" [306] [271] "Lammert" | "Lammert" [307] - "Rttgen" [308] [272] "so" | "so" [309] [273] "zu" | "zu" [310] [274] "." | "." [311] [275] "," | "," [312] [276] "," | "," [313] - "," [314] ... ... ... and 15 more ... actual | expected [291] "!" | "!" [332] [292] "-" | "-" [333] [293] "Ihren" | "Ihren" [334] - "drfen" [335] [294] "der" | "der" [336] [295] "einfach" | "einfach" [337] - "gefhrden" [338] [296] "heute" | "heute" [339] - "kndigen" [340] [297] "lassen" | "lassen" [341] ... ... ... and 2 more ... actual | expected [306] "vielleicht" | "vielleicht" [350] [307] "vor" | "vor" [351] [308] "wirklich" | "wirklich" [352] - "Lhne" [353] [309] "viel" | "viel" [354] [310] "wie" | "wie" [355] - "," [356] - "und" [357] [311] "." | "." [358] - "fhren" [359] ... ... ... and 10 more ... actual | expected [327] "." | "." [376] [328] "wichtiger" | "wichtiger" [377] [329] "," | "," [378] [330] "." - "," [379] [331] "von" - "stehen" [380] [332] "der" - "." [381] [333] "den" - "von" [382] [334] "allen" - "der" [383] [335] "an" - "den" [384] [336] "des" - "allen" [385] ... ... ... and 365 more ... `actual[640:645]`: "haben" "," "eine" "nur" "." "." `expected[751:758]`: "haben" "," "eine" "ein" "zu" "nur" "." "." `actual[652:657]`: "und" "ist" "werden" "nicht" "," "zu" `expected[765:771]`: "und" "ist" "werden" "fr" "nicht" "," "zu" actual | expected [667] "in" | "in" [781] [668] "keinen" | "keinen" [782] [669] "Wettbewerb" | "Wettbewerb" [783] - "Herausforderungen" [784] - "fr" [785] [670] "ist" | "ist" [786] [671] "," | "," [787] - "," [788] [672] ";" | ";" [789] [673] "als" | "als" [790] ... ... ... and 1 more ... `actual[719:724]`: "ihren" "jedem" "welchem" "," "also" "auf" `expected[836:842]`: "ihren" "jedem" "welchem" "fr" "," "also" "auf" `actual[726:731]`: "dies" "einfach" "leider" "wie" "zwar" "," `expected[844:850]`: "dies" "einfach" "leider" "nmlich" "wie" "zwar" "," `actual[734:739]`: "auch" "eine" "Menschen" "auch" "das" "mich" `expected[853:860]`: "auch" "eine" "Menschen" "es" "." "auch" "das" "mich" `actual[742:747]`: "neuen" "der" "." "wir" ":" "Woche" `expected[863:869]`: "neuen" "der" "." "knnen" "wir" ":" "Woche" actual | expected [751] "nicht" | "nicht" [873] [752] "," | "," [874] [753] "." | "." [875] - "Sie" [876] - "." [877] - "viel" [878] - "-" [879] - "aber" [880] - "sie" [881] [754] ";" | ";" [882] ... ... ... and 5 more ... actual | expected [768] "endlich" | "endlich" [898] [769] "im" | "im" [899] [770] "und" | "und" [900] - "Wochen" [901] - "den" [902] - "fr" [903] - "nicht" [904] [771] "Ihnen" | "Ihnen" [905] [772] "einem" | "einem" [906] [773] "den" | "den" [907] ... ... ... and 5 more ... `actual[835:840]`: "wie" "sein" "auch" "hat" "heute" "ihre" `expected[971:977]`: "wie" "sein" "auch" "fr" "hat" "heute" "ihre" `actual[859:864]`: "." "Zusammenhalt" "nun" "gemacht" ":" "dazu" `expected[996:1002]`: "." "Zusammenhalt" "nun" "als" "gemacht" ":" "dazu" actual | expected [866] "." | "." [1004] [867] "Sie" | "Sie" [1005] [868] "und" | "und" [1006] - "." [1007] - "fr" [1008] [869] "." | "." [1009] [870] "." | "." [1010] - "." [1011] [871] "?" | "?" [1012] [872] "mir" | "mir" [1013] ... ... ... and 1 more ... actual | expected [880] "Reaktorsicherheit" | "Reaktorsicherheit" [1021] [881] "als" | "als" [1022] [882] "anderswo" | "anderswo" [1023] - "drfen" [1024] [883] "da" | "da" [1025] [884] "dieser" | "dieser" [1026] [885] "einer" | "einer" [1027] - "mssen" [1028] [886] "mittlere" | "mittlere" [1029] [887] "nach" | "nach" [1030] ... ... ... and 1 more ... actual | expected [898] "Koalitionsvereinbarung" | "Koalitionsvereinbarung" [1041] [899] "Verfassung" | "Verfassung" [1042] [900] "," | "," [1043] - "." [1044] - "klar" [1045] [901] "," | "," [1046] [902] "." | "." [1047] [903] "haben" | "haben" [1048] [904] "worden" | "worden" [1049] - "." [1050] ... ... ... and 14 more ... `actual[924:929]`: "," "." "," "bei" "eine" "jetzt" `expected[1072:1080]`: "," "." "," "auch" "die" "die" "bei" "eine" "jetzt" actual | expected [933] "als" | "als" [1084] [934] "!" | "!" [1085] [935] "deshalb" | "deshalb" [1086] - "prfen" [1087] [936] "." | "." [1088] [937] "ist" | "ist" [1089] [938] "Signal" | "Signal" [1090] [939] "sich" | "sich" [1091] [940] "viel" | "viel" [1092] [941] "weit" | "weit" [1093] ... ... ... and 10 more ... actual | expected [961] "einen" | "einen" [1115] [962] "in" | "in" [1116] [963] "nicht" | "nicht" [1117] - "mssen" [1118] - "berwinden" [1119] [964] "Ende" | "Ende" [1120] [965] "arbeiten" | "arbeiten" [1121] [966] "beteiligen" | "beteiligen" [1122] [967] "bleiben" | "bleiben" [1123] [968] "entlasten" | "entlasten" [1124] ... ... ... and 12 more ... `actual[979:982]`: "Kurzarbeit" "Stabilisierung" "," "in" `expected[1139:1143]`: "Kurzarbeit" "Stabilisierung" "," "," "in" -- Error ('test_subcorpus.R:55:5'): generate subcorpus ------------------------- Error in `UseMethod("size")`: no applicable method for 'size' applied to an object of class "NULL" Backtrace: x 1. +-testthat::expect_identical(size(p), size(sc)) at test_subcorpus.R:55:5 2. | \-testthat::quasi_label(enquo(expected), expected.label, arg = "expected") 3. | \-rlang::eval_bare(expr, quo_get_env(quo)) 4. +-polmineR::size(sc) 5. \-polmineR::size(sc) [ FAIL 7 | WARN 48926 | SKIP 18 | PASS 684 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE See '/tmp/th798/26770135/R-release/1055/polmineR.Rcheck/00check.log' for details. [1] "2026-02-02 15:16:13 MST" Warning message: In install.packages(dt.tar.gz, repos = NULL) : installation of package '/scratch/th798/data.table-revdeps/2026-02-02/data.table_master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.tar.gz' had non-zero exit status > system(paste(c("diff -u", Rcheck.list), collapse=" ")) --- R_version_4.5.2_2025-10-31/release_1.18.2.1.Rcheck/00check.log 2026-02-02 14:58:30.268283078 -0700 +++ R_version_4.5.2_2025-10-31/master_1.18.99.1bd88cbcc806bdaa2aa276e12c78fb4ba13cb645.Rcheck/00check.log 2026-02-02 15:16:13.469781533 -0700 @@ -86,58 +86,58 @@ v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS i get token ids - v get token ids [35ms] + v get token ids [33ms] i get struc ids - v get struc ids [78ms] + v get struc ids [75ms] i drop tokens outside strucs - v drop tokens outside strucs [65ms] + v drop tokens outside strucs [62ms] i get unique s-attribute values - v get unique s-attribute values [352ms] + v get unique s-attribute values [338ms] i counting token per doc - v counting token per doc [288ms] + v counting token per doc [268ms] i decode strucs - v decode strucs [33ms] + v decode strucs [31ms] i decode and recode token ids - v decode and recode token ids [34ms] + v decode and recode token ids [32ms] i adjust ids - v adjust ids [35ms] + v adjust ids [32ms] i generate simple_triplet_matrix - v generate simple_triplet_matrix [32ms] + v generate simple_triplet_matrix [30ms] i get token ids - v get token ids [70ms] + v get token ids [69ms] i get struc ids - v get struc ids [76ms] + v get struc ids [74ms] i drop tokens outside strucs - v drop tokens outside strucs [45ms] + v drop tokens outside strucs [43ms] i get unique s-attribute values - v get unique s-attribute values [37ms] + v get unique s-attribute values [35ms] i generate unique document ids - v generate unique document ids [141ms] + v generate unique document ids [133ms] i counting token per doc - v counting token per doc [76ms] + v counting token per doc [75ms] i decode tokens and generate factor - v decode tokens and generate factor [99ms] + v decode tokens and generate factor [93ms] i prepare row and column labels - v prepare row and column labels [56ms] + v prepare row and column labels [41ms] i generate simple_triplet_matrix - v generate simple_triplet_matrix [55ms] + v generate simple_triplet_matrix [46ms] i generating document ids v generating document ids ... done @@ -177,13 +177,13 @@ i s-attribute "speaker" has values: yes i get regions and get values - v get regions and get values [23ms] + v get regions and get values [22ms] i instantiate objects (n = 124) - v instantiate objects (n = 124) [92ms] + v instantiate objects (n = 124) [93ms] i assign names - v assign names [15ms] + v assign names [13ms] i convert partition_bundle to `TermDocumentMatrix` i using p-attribute word @@ -245,28 +245,28 @@ v get token ids [67ms] i get struc ids - v get struc ids [71ms] + v get struc ids [69ms] i drop tokens outside strucs - v drop tokens outside strucs [39ms] + v drop tokens outside strucs [38ms] i get unique s-attribute values - v get unique s-attribute values [33ms] + v get unique s-attribute values [31ms] i generate unique document ids - v generate unique document ids [146ms] + v generate unique document ids [140ms] i counting token per doc - v counting token per doc [80ms] + v counting token per doc [75ms] i decode tokens and generate factor - v decode tokens and generate factor [103ms] + v decode tokens and generate factor [96ms] i prepare row and column labels - v prepare row and column labels [45ms] + v prepare row and column labels [42ms] i generate simple_triplet_matrix - v generate simple_triplet_matrix [34ms] + v generate simple_triplet_matrix [32ms] v corpus loaded: REUTERS v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) @@ -293,31 +293,31 @@ v instantiate 2 plpr_subcorpus objects [52ms] i subsetting by date - v subsetting by date [192ms] + v subsetting by date [191ms] i generating speeches i generating names v generating names [339ms] i reorder objects - v reorder objects [34ms] + v reorder objects [32ms] i coercing partitions to plpr_subcorpus - v coercing partitions to plpr_subcorpus [210ms] + v coercing partitions to plpr_subcorpus [206ms] ... get cpos and strucs i distinct dates detected: 1 i generating speeches - v generating speeches [732ms] + v generating speeches [670ms] i generating names - v generating names [91ms] + v generating names [89ms] i reordering partitions - v reordering partitions [34ms] + v reordering partitions [32ms] i coercing partitions to plpr_partitions - v coercing partitions to plpr_partitions [33ms] + v coercing partitions to plpr_partitions [31ms] i using p-attribute word i create temporary data.table @@ -433,49 +433,49 @@ ... no hits for query: asdfasdf v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... creating data.table with corpus positions ... adding tokens ... generating phrases @@ -483,88 +483,88 @@ ... creating bundle of count objects v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... no hits for query: asdfasdfasdfasdf ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) i decoding p-attribute: word - v decoding p-attribute: word [202ms] + v decoding p-attribute: word [203ms] i decoding p-attribute: pos v decoding p-attribute: pos [152ms] i decoding s-attribute: interjection - v decoding s-attribute: interjection [214ms] + v decoding s-attribute: interjection [216ms] i decoding s-attribute: date - v decoding s-attribute: date [224ms] + v decoding s-attribute: date [220ms] i decoding s-attribute: party - v decoding s-attribute: party [249ms] + v decoding s-attribute: party [246ms] i decoding s-attribute: speaker - v decoding s-attribute: speaker [271ms] + v decoding s-attribute: speaker [266ms] i decoding s-attribute: protocol_date - v decoding s-attribute: protocol_date [190ms] + v decoding s-attribute: protocol_date [187ms] i decoding s-attribute: protocol_lp - v decoding s-attribute: protocol_lp [175ms] + v decoding s-attribute: protocol_lp [173ms] i decoding s-attribute: role - v decoding s-attribute: role [198ms] + v decoding s-attribute: role [195ms] i assembling data.table - v assembling data.table [46ms] + v assembling data.table [42ms] i decoding p-attribute: word - v decoding p-attribute: word [217ms] + v decoding p-attribute: word [219ms] i decoding s-attribute: party - v decoding s-attribute: party [207ms] + v decoding s-attribute: party [209ms] i assembling data.table v assembling data.table [16ms] i decoding p-attribute: word - v decoding p-attribute: word [203ms] + v decoding p-attribute: word [204ms] i assembling data.table v assembling data.table [15ms] @@ -581,143 +581,143 @@ ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values - v get regions and get values [14ms] + v get regions and get values [15ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [26ms] i assign names - v assign names [13ms] + v assign names [14ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word i coercion to `partition_bundle` class v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ... combining frequency lists ... statistical test: chisquare ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ... combining frequency lists ... statistical test: chisquare v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting counts for p-attribute(s): word ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ... get cpos and strucs v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ... get cpos and strucs @@ -732,22 +732,22 @@ v assign names [13ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ... get cpos and strucs - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ... get cpos and strucs + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "places" has values: yes i get regions and get values v get regions and get values [14ms] @@ -759,17 +759,17 @@ v assign names [13ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] @@ -782,26 +782,26 @@ v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i getting sizes ... getting sizes ! corpus loaded multiple times with following registries: i getting sizes - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp i getting sizes - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry i getting sizes - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i getting sizes v getting sizes [48ms] @@ -809,89 +809,89 @@ v calculate frequencies [14ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ... get cpos and strucs - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ... get cpos and strucs + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' No hits for query: asdfasdf ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' No hits for query: "asdfasdfasdfasd.*" ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... getting corpus positions ... number of hits: 21 ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... checking that all p-attributes are available ... already present - skip getting ids for p-attribute: word ... generating contexts ... getting corpus positions ... number of hits: 7 ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... checking that all p-attributes are available ... already present - skip getting ids for p-attribute: word ... generating contexts @@ -901,45 +901,45 @@ ... getting corpus positions ... no matches for query (or no matches left after applying stoplist/positivelist) ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... dropping nodes ... counting tokens in context ... creating new index for hits @@ -951,66 +951,66 @@ i s-attribute for splitting ("speaker") is sibling of s-attribute "date" i s-attribute "speaker" has values: yes i get list of regions - v get list of regions [17ms] + v get list of regions [16ms] i instantiate 37 plpr_subcorpus objects - v instantiate 37 plpr_subcorpus objects [33ms] + v instantiate 37 plpr_subcorpus objects [32ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] @@ -1022,33 +1022,33 @@ v assign names [13ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) i s-attribute "speaker" has values: yes i get regions and get values - v get regions and get values [22ms] + v get regions and get values [21ms] i instantiate objects (n = 124) - v instantiate objects (n = 124) [49ms] + v instantiate objects (n = 124) [48ms] i assign names - v assign names [14ms] + v assign names [13ms] i s-attribute "speaker" has values: yes i get regions and get values - v get regions and get values [22ms] + v get regions and get values [21ms] i instantiate objects (n = 124) - v instantiate objects (n = 124) [49ms] + v instantiate objects (n = 124) [48ms] i assign names v assign names [14ms] @@ -1062,7 +1062,7 @@ v get list of regions [18ms] i instantiate 124 plpr_partition objects - v instantiate 124 plpr_partition objects [53ms] + v instantiate 124 plpr_partition objects [52ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus @@ -1077,75 +1077,75 @@ v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS i s-attributes are not siblings, get relationship @@ -1153,22 +1153,22 @@ i s-attributes not ordered according to tree structure (inefficient) i decode s-attribute "party" - v decode s-attribute "party" [45ms] + v decode s-attribute "party" [44ms] i merge corpus position results for s-attribute "party" - v merge corpus position results for s-attribute "protocol_date" [110ms] + v merge corpus position results for s-attribute "protocol_date" [114ms] i decode s-attribute "protocol_date" - v decode s-attribute "protocol_date" [65ms] + v decode s-attribute "protocol_date" [64ms] i merge corpus position results for s-attribute "protocol_date" - v merge corpus position results for s-attribute "speaker" [114ms] + v merge corpus position results for s-attribute "speaker" [115ms] i decode s-attribute "speaker" v decode s-attribute "speaker" [71ms] i merge corpus position results for s-attribute "speaker" - v merge corpus position results for s-attribute "speaker" [895ms] + v merge corpus position results for s-attribute "speaker" [940ms] i aggregate results and get sizes v aggregate results and get sizes [73ms] @@ -1194,9 +1194,9 @@ ... get cpos and strucs ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] @@ -1214,7 +1214,7 @@ v get regions and get values [22ms] i keep only matches for 3 values provided - v keep only matches for 3 values provided [18ms] + v keep only matches for 3 values provided [17ms] i instantiate objects (n = 3) v instantiate objects (n = 3) [22ms] @@ -1245,7 +1245,7 @@ i s-attribute "speaker" has values: yes i get regions and get values - v get regions and get values [21ms] + v get regions and get values [22ms] i instantiate objects (n = 124) v instantiate objects (n = 124) [47ms] @@ -1259,85 +1259,85 @@ v corpus loaded: REUTERS v corpus loaded: UNGA ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: REUTERS v corpus loaded: UNGA v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... get cpos and strucs ... get cpos and strucs ... get cpos and strucs ... get cpos and strucs ... get cpos and strucs ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i Cannot map s-attributes and types ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i Cannot map s-attributes and types ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i Cannot map s-attributes and types Error in .checkTypos(e, names_x) : Object 'foo' not found amongst [struc, cpos_left, cpos_right, id] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i Cannot map s-attributes and types x Could not find package GermaParl2. Please check for typos, and/or whether it is installed for the R version you are using. ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values - v get regions and get values [14ms] + v get regions and get values [15ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [25ms] @@ -1364,9 +1364,9 @@ v generating simple triplet matrix ... done ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] @@ -1394,9 +1394,9 @@ v create TermDocumentMatrix ... done ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] @@ -1408,17 +1408,17 @@ v assign names [13ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] @@ -1430,20 +1430,20 @@ v assign names [13ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values - v get regions and get values [15ms] + v get regions and get values [14ms] i instantiate objects (n = 20) v instantiate objects (n = 20) [26ms] @@ -1452,23 +1452,23 @@ v assign names [13ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] i instantiate objects (n = 20) - v instantiate objects (n = 20) [25ms] + v instantiate objects (n = 20) [24ms] i assign names v assign names [13ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] @@ -1480,13 +1480,13 @@ v assign names [13ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i s-attribute "id" has values: yes i get regions and get values v get regions and get values [14ms] @@ -1498,9 +1498,9 @@ v assign names [13ms] ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("speaker") is sibling of s-attribute "speaker" @@ -1509,14 +1509,14 @@ v get list of regions [15ms] i instantiate 2 plpr_subcorpus objects - v instantiate 2 plpr_subcorpus objects [26ms] + v instantiate 2 plpr_subcorpus objects [25ms] i s-attribute "speaker" has values: yes i get regions and get values v get regions and get values [22ms] i instantiate objects (n = 124) - v instantiate objects (n = 124) [48ms] + v instantiate objects (n = 124) [47ms] i assign names v assign names [13ms] @@ -1552,7 +1552,7 @@ v get list of regions [18ms] i instantiate 124 plpr_subcorpus objects - v instantiate 124 plpr_subcorpus objects [52ms] + v instantiate 124 plpr_subcorpus objects [51ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus @@ -1570,20 +1570,20 @@ i s-attribute for splitting ("speaker") is sibling of s-attribute "date" i s-attribute "speaker" has values: yes i get list of regions - v get list of regions [17ms] + v get list of regions [16ms] i instantiate 77 plpr_partition objects - v instantiate 77 plpr_partition objects [42ms] + v instantiate 77 plpr_partition objects [41ms] i bundle class: subcorpus_bundle i objects in bundle: plpr_subcorpus i s-attribute for splitting ("date") is sibling of s-attribute "interjection" i s-attribute "date" has values: yes i get list of regions - v get list of regions [17ms] + v get list of regions [18ms] i instantiate 5 plpr_subcorpus objects - v instantiate 5 plpr_subcorpus objects [26ms] + v instantiate 5 plpr_subcorpus objects [28ms] ... get cpos and strucs i bundle class: partition_bundle @@ -1591,40 +1591,40 @@ i s-attribute for splitting ("date") is sibling of s-attribute "interjection" i s-attribute "date" has values: yes i get list of regions - v get list of regions [18ms] + v get list of regions [17ms] i instantiate 5 plpr_partition objects - v instantiate 5 plpr_partition objects [29ms] + v instantiate 5 plpr_partition objects [27ms] i s-attribute "date" has values: yes i get regions and get values - v get regions and get values [34ms] + v get regions and get values [23ms] i instantiate objects (n = 5) - v instantiate objects (n = 5) [22ms] + v instantiate objects (n = 5) [26ms] i assign names - v assign names [13ms] + v assign names [15ms] i s-attribute "date" has values: yes i get regions and get values - v get regions and get values [20ms] + v get regions and get values [22ms] i instantiate objects (n = 5) - v instantiate objects (n = 5) [23ms] + v instantiate objects (n = 5) [26ms] i assign names - v assign names [13ms] + v assign names [15ms] i s-attribute "protocol_date" has values: yes i get regions and get values - v get regions and get values [14ms] + v get regions and get values [16ms] i instantiate objects (n = 5) - v instantiate objects (n = 5) [22ms] + v instantiate objects (n = 5) [25ms] i assign names - v assign names [13ms] + v assign names [15ms] i split by s-attribute "protocol_date" i bundle class: subcorpus_bundle @@ -1632,10 +1632,10 @@ i s-attribute for splitting ("protocol_date") is ancestor of s-attribute "speaker" i s-attribute "protocol_date" has values: yes i get list of regions - v get list of regions [15ms] + v get list of regions [17ms] i instantiate 2 plpr_subcorpus objects - v instantiate 2 plpr_subcorpus objects [26ms] + v instantiate 2 plpr_subcorpus objects [29ms] i objects in bundle after subsetting is 2 (3 less than before) v corpus loaded: GERMAPARLMINI (version: 0.1.0 | build date: 2023-04-16) @@ -1643,89 +1643,89 @@ ... getting counts for p-attribute(s): word v corpus loaded: REUTERS ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ... get cpos and strucs - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ... get cpos and strucs + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' v corpus loaded: REUTERS v corpus loaded: UNGA ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... applying stoplist ... number of hits dropped due to stoplist: 13 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... filtering by positivelist ... number of hits dropped due to positivelist: 65 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' - ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' + ! corpus loaded multiple times with following registries: + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... new number of hits: 12 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' ... checking that all p-attributes are available ... already present - skip getting ids for p-attribute: word ... decode p-attribute: word ... new number of hits: 12 ... update count statistics for slot cpos ! corpus loaded multiple times with following registries: - * /tmp/th798/26770135/RtmpGSzcRw/registry_tmp - * /tmp/th798/26770135/RtmpGSzcRw/polmineR_registry - i using '/tmp/th798/26770135/RtmpGSzcRw/registry_tmp' + * /tmp/th798/26770135/RtmphWp8Z0/registry_tmp + * /tmp/th798/26770135/RtmphWp8Z0/polmineR_registry + i using '/tmp/th798/26770135/RtmphWp8Z0/registry_tmp' [ FAIL 7 | WARN 48926 | SKIP 18 | PASS 684 ] == Skipped tests (18) ========================================================== > library(data.table, lib.loc=R.home("library")) > (sig.diff.dt <- myDiff(Rvers)) Key: Empty data.table (0 rows and 3 cols): checking,master,release > > ## If there are significant differences, use git bisect to find when > ## they started. > if(nrow(sig.diff.dt)){ + dt.git <- file.path(task.dir, "data.table.git") + unlink(dt.git, recursive=TRUE, force=TRUE) + system(paste("cd ~/R/data.table && git fetch --tags")) + system(paste("git clone ~/R/data.table", dt.git)) + release.tag <- gsub(".tar.gz|.*_", "", cargs[["release"]]) + rev.parse.cmd <- paste( + "cd", dt.git, "&& git rev-parse master") + master.sha <- system(rev.parse.cmd, intern=TRUE) + merge.base.cmd <- paste( + "cd", dt.git, "&& git merge-base master", release.tag) + merge.base.sha <- system(merge.base.cmd, intern=TRUE) + old.sha <- merge.base.sha + run_R <- file.path(proj.dir, "install_dt_then_check_dep.R") + sig.diff.dt[, first.bad.commit := NA_character_] + sig.diff.dt[, comments := NA_character_] + for(diff.i in 1:nrow(sig.diff.dt)){ + sig.diff.row <- sig.diff.dt[diff.i] + bisect.cmd <- paste( + "cd", dt.git, "&&", + "git bisect start &&", + "git bisect old", old.sha, "&&", + "git bisect new master &&", + "git bisect run", + R.home('bin/Rscript'), + run_R, + shQuote(sig.diff.row$checking), + sig.diff.row$release, + rev.dep.release.tar.gz, + release.tag) + print(bisect.cmd) + bisect.out <- system(bisect.cmd, intern=TRUE) + cat(bisect.out,sep="\n") + if(is.null(attr(bisect.out,"status"))){ + first.bad.sha <- nc::capture_all_str( + bisect.out, + sha="[0-9a-f]+", + " is the first new commit")$sha + parent.cmd <- paste( + "cd ~/R/data.table && git log --pretty=%P -n 1", + first.bad.sha) + parent.sha <- system(parent.cmd, intern=TRUE) + sig.diff.dt[diff.i, first.bad.commit := first.bad.sha] + parent.msg <- paste0("parent=", parent.sha) + this.comment <- if(parent.sha==old.sha){ + paste(parent.msg, "same as git bisect old") + }else if(first.bad.sha==master.sha){ + paste("same as git bisect new=master,", parent.msg) + }else{ + parent.msg + } + sig.diff.dt[diff.i, comments := this.comment] + } + } + ## add CRAN column. + sig.diff.dt[, CRAN := { + flavor <- get_flavor(Rvers) + details <- data.table(flavor=unique(flavor))[, { + base <- "https://www.r-project.org/nosvn/R.check/" + u <- paste0(base, flavor, "/", rev.dep, "-00check.txt") + check.txt <- tempfile() + tryCatch({ + download.file(u, check.txt, quiet=TRUE) + }, error=function(e){ + NULL + }) + check.lines <- if(file.exists(check.txt)){ + readLines(check.txt,encoding="UTF-8") + }else{ + "" + } + repl.lines <- gsub("[\u2018\u2019]", "'", check.lines) + ##gsub("[‘’]", "'", check.lines) does not work with LC_ALL=C. + myStatus(line.vec=repl.lines) + }, by=flavor] + select.dt <- data.table(flavor, checking) + details[select.dt, msg, on=.(flavor, checking)] + }] + dir.create(file.path(job.dir, Rvers)) + diffs.csv <- file.path(job.dir, Rvers, "significant_differences.csv") + data.table::fwrite(sig.diff.dt, diffs.csv) + print(sig.diff.dt) + } >