R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Loading required package: data.table
> if(!requireNamespace("data.table"))install.packages("~/R/data.table",repo=NULL)
> if(!requireNamespace("nc"))install.packages("~/R/nc",repo=NULL)
Loading required namespace: nc
> library(data.table)
> cran.url <- "http://cloud.r-project.org/"
> options(repos=c(CRAN=cran.url))
> if(!requireNamespace("BiocManager"))install.packages("BiocManager")
Loading required namespace: BiocManager
> avail = available.packages(repos=BiocManager::repositories())
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
    CRAN: http://cloud.r-project.org/
> all.deps = tools::package_dependencies(
+   "data.table",
+   db=avail,
+   reverse=TRUE,
+   recursive=TRUE
+ )[[1]]
> is.bioc <- grepl("bioconductor", avail[,"Repository"])
> from.bioc <- avail[is.bioc, "Package"]
> bioc.deps <- intersect(from.bioc, all.deps)
> missing.dt <- nc::capture_all_str(
+   "params.teeout",
+   "there is no package called .",
+   dep='[^"]+?',
+   ".\n")
> fwrite(unique(missing.dt),"missing.deps.csv")
> deps = tools::package_dependencies(
+   "data.table",
+   db = avail[!is.bioc,],# just CRAN revdeps though (not Bioc) from October 2020
+   which="all",
+   reverse=TRUE,
+   recursive=FALSE
+ )[[1]]
> dt.git.dir <- "~/R/data.table"
> popular_deps.csv <- "~/genomic-ml/data.table-revdeps/popular_deps.csv"
> popular_deps <- fread(popular_deps.csv)
> (popular_deps <- data.table(dep=unique(c(
+   popular_deps$dep,
+   bioc.deps,
+   missing.dt$dep))))
               dep
            <char>
  1: ABAEnrichment
  2:        abseqR
  3:       ADAMgui
  4:  adductomicsR
  5:      ADImpute
 ---              
904:      textstem
905:     relations
906:   wesanderson
907:     beadarray
908:            nc
> fwrite(popular_deps,popular_deps.csv)
> git.cmds <- paste(
+   "cd", dt.git.dir,
+   "&& git checkout master && git pull && git log|head -1")
> git.out <- system(git.cmds, intern=TRUE)
Already on 'master'
From https://github.com/rdatatable/data.table
   2cb03162..8785804c  master                -> origin/master
   267c830d..48c56aa5  fix6867               -> origin/fix6867
 * [new branch]        remove_NULL_type_test -> origin/remove_NULL_type_test
> master.sha <- sub("commit ", "", git.out[length(git.out)])
> pretty.cmd <- paste(
+   "cd", dt.git.dir,
+   '&& git log --pretty=format:"%h - %s"|head -1')
> pretty.line <- system(pretty.cmd, intern=TRUE)
> writeLines(pretty.line, "data.table_master.git.log")
> master.desc <- read.dcf(file.path(dt.git.dir, "DESCRIPTION"))
> master.version <- master.desc[, "Version"]
> if(FALSE){
+   # before build need to install deps.
+   install.packages("data.table", dep=TRUE)
+   system("conda install pandoc")
+   ## for building R
+   if(FALSE){#old
+   system("conda install -c biobuilds readline-devel")
+   system("conda install -c rmg glibc")
+   system("conda install -c anaconda openssl libxml2 freetype libxcb libtiff pango")
+   system("conda install -c conda-forge proj gsl mpi av fftw imagemagick mysql-devel netcdf4 librsvg icu pkg-config gdal jpeg libcurl texinfo fontconfig cairo xorg-libx11 xorg-libxt xorg-libxext xorg-libxau xorg-libxrender libgomp")
+   }
+   system("conda install -c conda-forge pandoc udunits readline openssl libxml2 freetype libxcb libtiff pango glib proj gsl mpi av fftw imagemagick mysql-devel netcdf4 librsvg icu pkg-config gdal jpeg libcurl texinfo fontconfig cairo xorg-libx11 xorg-libxt xorg-libxext xorg-libxau xorg-libxrender libgomp gfortran gcc g++")
+   tinytex::install_tinytex()
+   tinytex:::install_yihui_pkgs()
+   system('tlmgr search --global --file "/grfext.sty"')
+   system("tlmgr install grfext")
+ }
> 
> conda.pkgs <- c(
+   tcltk2="tk",
+   protolite="protobuf",
+   odbc="pyodbc",
+   pdftools="poppler",
+   ssh="libssh",
+   tesseract="tesseract",
+   gifski="rust",
+   sodium="libsodium",
+   Rmpfr="mpfr",
+   redland="rdflib",
+   glpkAPI="glpk",
+   clustermq="zeromq",
+   RPostgres="libpq",
+   xslt="libxslt",
+   RQuantLib="quantlib",
+   RODBC="r-rodbc",
+   jqr="jq")
> ## some libraries are installed under $HOME (openssl), some using
> ## module system (gdal), and most others via conda.
> build.modules <- c(
+   sf="gdal/3.3.1",
+   runjags="jags",
+   Rmpi="openmpi",
+   "anaconda3",
+   Rfast="gcc")
> load.vec <- paste("module load", build.modules, "&&")
> load.str <- paste(load.vec, collapse=" ")
> (env.setup <- paste(load.str, "conda activate emacs1 &&"))
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 &&"
> path.cmd <- paste(env.setup, "echo $PATH")
> path.str <- system(path.cmd,intern=TRUE)
> path.vec <- strsplit(path.str, ":")[[1]]
> openmpi.bin <- grep('openmpi', path.vec, value=TRUE)
> openmpi.dir <- dirname(openmpi.bin)
> 
> ## create scratch dir.
> now <- Sys.time()
> tomorrow <- now+60*60*24
> today.str <- strftime(now, "%Y-%m-%d")
> tomorrow.str <- strftime(tomorrow, "%Y-%m-%d")
> USER <- Sys.getenv("USER")
> scratch.dir <- file.path(
+   "/scratch",
+   USER,
+   "data.table-revdeps",
+   today.str)
> writeLines(scratch.dir, "JOBDIR")
> dir.create(scratch.dir, showWarnings = FALSE, recursive = TRUE)
> R.src.prefix <- "~/R"
> 
> ## Build R-devel and R-release.
> banner.lines <- readLines(paste0(cran.url, "banner.shtml"))
> banner.row <- nc::capture_all_str(
+   banner.lines,
+   '"',
+   path='.*?tar[.]gz',
+   '"')
> R.vec <- c(
+   devel="src/base-prerelease/R-devel.tar.gz",
+   release=banner.row$path)
> R.ver.vec <- c()
> for(R.i in seq_along(R.vec)){
+   path.tar.gz <- R.vec[R.i]
+   version.lower <- names(path.tar.gz)
+   R.tar.gz <- basename(path.tar.gz) 
+   R.dir <- paste0("R-", version.lower)
+   R.dir.orig <- sub(".tar.gz", "", R.tar.gz)
+   R.ver.path <- normalizePath(
+     file.path(R.src.prefix, R.dir))
+   R <- file.path(R.ver.path, "bin", "R")
+   rebuild.R <- if(interactive()){
+     FALSE
+   }else if(version.lower=="devel"){
+     TRUE
+   }else{
+     R.version.lines <- system(paste(R, "--version"), intern=TRUE)
+     installed.R.vers <- nc::capture_all_str(
+       R.version.lines[2], "^R version ", version=".*?", " [(]"
+     )[, paste0("R-", version)]
+     installed.R.vers != R.dir.orig
+   }
+   includes <- c("$CONDA_PREFIX","$HOME")
+   libs <- c("$CONDA_PREFIX/lib","$HOME/lib","$HOME/lib64")
+   flag <- function(VAR, value.vec, collapse){
+     paste0(VAR, '="', paste(value.vec, collapse=collapse), '"')
+   }
+   build.cmd <- paste(
+     env.setup,
+     "cd", R.src.prefix,
+     "&& tar xf", R.tar.gz,
+     if(R.dir.orig!=R.dir)paste("&& mv", R.dir.orig, R.dir),
+     "&& cd", R.dir,
+     '&&',
+     ## flag("FC", "$CONDA_PREFIX/bin/gfortran", ""),
+     ## flag("CC", "$CONDA_PREFIX/bin/gcc", ""),
+     ## flag("CXX", "$CONDA_PREFIX/bin/g++", ""),
+     PKG_CONFIG_PATH <- flag("PKG_CONFIG_PATH", paste0(libs, "/pkgconfig"), ":"),
+     flag("CPPFLAGS", paste0("-I", includes, "/include"), " "),
+     flag(
+       "LDFLAGS",
+       paste0("-L", libs, " -Wl,-rpath=", libs),
+       " "),
+     './configure',
+     '--prefix=$HOME',
+     '--enable-memory-profiling',
+     '--with-tcl-config=$CONDA_PREFIX/lib/tclConfig.sh',
+     '--with-tk-config=$CONDA_PREFIX/lib/tkConfig.sh',
+     '&& make clean && LC_ALL=C make')
+   R.e <- function(cmd){
+     R.cmd <- sprintf(
+       "%s R_LIBS_USER= %s xvfb-run -d %s -e '%s' 2>&1",
+       env.setup,
+       PKG_CONFIG_PATH,
+       R,
+       cmd)
+     print(R.cmd)
+     system(R.cmd)
+   }
+   if(rebuild.R){
+     ## first save popular packages.
+     base.rec.pkgs <- basename(c(
+       dirname(Sys.glob(file.path(
+         R.ver.path,"src","library","*","DESCRIPTION"))),
+       sub("[.]tgz$", "", Sys.glob(file.path(
+         R.ver.path,"src","library","Recommended","*.tgz")))
+     ))
+     already.installed <- dir(file.path(R.ver.path, "library"))
+     save.pkgs <- setdiff(already.installed,base.rec.pkgs)
+     pop.lib.vec <- file.path(R.ver.path,"library",save.pkgs)
+     library.save <- file.path(R.src.prefix, "library-save", version.lower)
+     dir.create(library.save, showWarnings = FALSE, recursive = TRUE)
+     pop.save.vec <- file.path(library.save,save.pkgs)
+     file.rename(pop.lib.vec, pop.save.vec)
+     ## Then delete old base R source.
+     local.tar.gz <- file.path(R.src.prefix, R.tar.gz)
+     unlink(local.tar.gz)
+     unlink(R.ver.path, recursive = TRUE)
+     ## Then download base R source and build.
+     R.url <- paste0(cran.url, path.tar.gz)
+     download.file(R.url, local.tar.gz)
+     cat(build.cmd,"\n")
+     system(build.cmd)
+     ## Then restore saved packages.
+     file.rename(pop.save.vec, pop.lib.vec)
+     ## these packages need to be installed specially when R is first
+     ## built, but do not need any special update.
+     R.e('install.packages("BiocManager")')#needed for popular deps from bioc.
+   }
+   if(FALSE){
+     ## These are notes for installing some system libraries from source.
+     system("cd ~/src/icu && PKG_CONFIG_PATH=$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig:$HOME/.conda/envs/emacs1/lib/pkgconfig ./configure --prefix=$HOME && make && make install")
+     system('cd ~/src/rasqual-0.9.33 && LDFLAGS="-L$HOME/.conda/envs/emacs1/lib -Wl,-rpath=$HOME/.conda/envs/emacs1/lib" PKG_CONFIG_PATH=$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig:$HOME/.conda/envs/emacs1/lib/pkgconfig ./configure --prefix=$HOME && make && make install')
+     system('cd ~/src/raptor2-2.0.15 && LDFLAGS="-L$HOME/.conda/envs/emacs1/lib -Wl,-rpath=$HOME/.conda/envs/emacs1/lib" PKG_CONFIG_PATH=$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig:$HOME/.conda/envs/emacs1/lib/pkgconfig ./configure --prefix=$HOME && make && make install')
+     system('cd ~/redland-1.0.17 && LDFLAGS="-L$HOME/.conda/envs/emacs1/lib -Wl,-rpath=$HOME/.conda/envs/emacs1/lib" PKG_CONFIG_PATH=$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig:$HOME/.conda/envs/emacs1/lib/pkgconfig ./configure --with-mysql=no --with-virtuoso=no --prefix=$HOME && make && make install')
+     R.e('install.packages("redland")')#build icu first https://github.com/unicode-org/icu/releases/tag/release-70-1 from https://download.librdf.org/source/ CFLAGS=-I$HOME/.conda/envs/emacs1/include LDFLAGS="-L$HOME/.conda/envs/emacs1/lib -Wl,-rpath=$HOME/.conda/envs/emacs1/lib" ./configure --prefix=$HOME && make && make install
+     R.e('install.packages("RQuantLib")')#works if we have quantlib, but conda install quantlib hangs. ./configure --with-boost-include=$HOME/.conda/envs/emacs1/include --with-boost-lib=$HOME/.conda/envs/emacs1/lib --prefix=$HOME && make && make install
+     R.e('install.packages("gifski")')#works, after install rust to homedir via "curl https://sh.rustup.rs -sSf | sh"
+     ## OK ABOVE
+     ##R.e('install.packages("symengine")')#mpfr installed but cant find, posted https://github.com/symengine/symengine.R/issues/119
+   }
+   options.repos.bioc <- 'options(repos=c(if(requireNamespace("BiocManager"))BiocManager::repositories(),CRAN="http://cloud.r-project.org"))'
+   ## These packages have special installation procedures, and there
+   ## are not a lot of them, so we can run them for both R
+   ## versions. Will update if there is a new version on CRAN.
+   R.e(sprintf('install.packages("Rmpi",configure.args="--with-mpi=%s")', openmpi.dir))
+   R.e('install.packages("RODBC",configure.args="--with-odbc-manager=odbc")')
+   ##R.e('install.packages("slam");install.packages("Rcplex",configure.args="--with-cplex-dir=/home/th798/cplex")')#conda install -c ibmdecisionoptimization cplex only installs python package, need to register on IBM web site, download/install cplex, then install.packages slam, then install packages Rcplex with configure args.
+   R.e('install.packages("slam");install.packages("~/R/Rcplex",repos=NULL,configure.args="--with-cplex-dir=/home/th798/cplex")')#conda install -c ibmdecisionoptimization cplex only installs python package, need to register on IBM web site, download/install cplex, then install.packages slam, then install packages Rcplex with configure args.
+   R.e(sprintf('%s;dep <- read.csv("missing.deps.csv")$dep;install.packages(dep)', options.repos.bioc))#not dep=TRUE since these are deps (not checked) of revdeps (which we check).
+   R.e(sprintf('%s;dep <- read.csv("%s")$dep;ins <- rownames(installed.packages());print(some <- dep[!dep %%in%% ins]);install.packages(some)', options.repos.bioc, popular_deps.csv))#not dep=TRUE since these are deps (not checked) of revdeps (which we check).
+   R.e(sprintf('%s;update.packages(ask=FALSE)', options.repos.bioc))
+   if(FALSE){
+     ## install deps from bioc now.
+   }
+   R.java.cmd <- paste(R, "CMD javareconf")
+   system(R.java.cmd)
+   R_VERSION <- paste0("R_",toupper(version.lower))
+   R.e(sprintf('cat(gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])), file="%s")', file.path(scratch.dir, R_VERSION)))
+   R.ver.vec[[R.dir]] <- R.ver.path
+ }
trying URL 'http://cloud.r-project.org/src/base-prerelease/R-devel.tar.gz'
Content type 'application/x-gzip' length 40476300 bytes (38.6 MB)
==================================================
downloaded 38.6 MB

module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && cd ~/R && tar xf R-devel.tar.gz  && cd R-devel && PKG_CONFIG_PATH="$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig" CPPFLAGS="-I$CONDA_PREFIX/include -I$HOME/include" LDFLAGS="-L$CONDA_PREFIX/lib -Wl,-rpath=$CONDA_PREFIX/lib -L$HOME/lib -Wl,-rpath=$HOME/lib -L$HOME/lib64 -Wl,-rpath=$HOME/lib64" ./configure --prefix=$HOME --enable-memory-profiling --with-tcl-config=$CONDA_PREFIX/lib/tclConfig.sh --with-tk-config=$CONDA_PREFIX/lib/tkConfig.sh && make clean && LC_ALL=C make 
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /usr/bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /usr/bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/less... /usr/bin/less
checking for /usr/bin/gtar... /usr/bin/gtar
checking for tex... /home/th798/bin/tex
checking for pdftex... /home/th798/bin/pdftex
checking for pdflatex... /home/th798/bin/pdflatex
checking for makeindex... /home/th798/bin/makeindex
checking for texi2any... /home/th798/.conda/envs/emacs1/bin/texi2any
checking whether texi2any version is at least 6.1... yes
checking for ginstall-info... no
checking for install-info... /home/th798/.conda/envs/emacs1/bin/install-info
checking for texi2dvi... /home/th798/.conda/envs/emacs1/bin/texi2dvi
checking for kpsewhich... /home/th798/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /usr/bin/gzip
checking for bzip2... /usr/bin/bzip2
using default browser ... /usr/bin/firefox
checking for /usr/bin/open... /usr/bin/open
checking for working aclocal... missing
checking for working autoconf... missing
checking for working autoheader... missing
checking for bison... bison -y
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /home/th798/.conda/envs/emacs1/bin/pkg-config
checking for gcc... /packages/gcc/12.2.0-nnbserq/bin/gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking for sys/time.h... yes
checking for sys/param.h... yes
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc -std=gnu23 is a C23 compiler... no
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc -std=gnu2x is a C23 compiler... no
configure: WARNING: C23 support is unavailable
checking how to run the C preprocessor... /packages/gcc/12.2.0-nnbserq/bin/gcc -E
looking for a modern Fortran compiler
checking whether the compiler supports GNU Fortran... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gfortran accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/g++ option to enable C++11 features... none needed
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include can compile C++ code... yes
checking how to run the C++ preprocessor... /packages/gcc/12.2.0-nnbserq/bin/g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc accepts -fvisibility... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ accepts -fvisibility... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gfortran accepts -fvisibility... yes
checking for gcc... gcc
checking whether the compiler supports GNU Objective C... no
checking whether gcc accepts -g... no
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc -std=gnu17 is a C17 compiler... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc -std=gnu90 is a C90 compiler... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc -std=gnu99 is a C99 compiler... yes
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by /packages/gcc/12.2.0-nnbserq/bin/gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 3458764513820540925
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... gawk
checking command to parse /usr/bin/nm -B output from /packages/gcc/12.2.0-nnbserq/bin/gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if /packages/gcc/12.2.0-nnbserq/bin/gcc supports -fno-rtti -fno-exceptions... no
checking for /packages/gcc/12.2.0-nnbserq/bin/gcc option to produce PIC... -fPIC -DPIC
checking if /packages/gcc/12.2.0-nnbserq/bin/gcc PIC flag -fPIC -DPIC works... yes
checking if /packages/gcc/12.2.0-nnbserq/bin/gcc static flag -static works... no
checking if /packages/gcc/12.2.0-nnbserq/bin/gcc supports -c -o file.o... yes
checking if /packages/gcc/12.2.0-nnbserq/bin/gcc supports -c -o file.o... (cached) yes
checking whether the /packages/gcc/12.2.0-nnbserq/bin/gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... /packages/gcc/12.2.0-nnbserq/bin/g++ -E
checking for ld used by /packages/gcc/12.2.0-nnbserq/bin/g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the /packages/gcc/12.2.0-nnbserq/bin/g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/g++ option to produce PIC... -fPIC -DPIC
checking if /packages/gcc/12.2.0-nnbserq/bin/g++ PIC flag -fPIC -DPIC works... yes
checking if /packages/gcc/12.2.0-nnbserq/bin/g++ static flag -static works... no
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checking whether the /packages/gcc/12.2.0-nnbserq/bin/g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
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checking if /packages/gcc/12.2.0-nnbserq/bin/gfortran static flag -static works... no
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checking whether the /packages/gcc/12.2.0-nnbserq/bin/gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
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checking for /packages/gcc/12.2.0-nnbserq/bin/gcc options needed to detect all undeclared functions... none needed
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checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of double... 8
checking size of size_t... 8
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checking size of long double... 16
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc supports -c -o FILE.lo... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/gcc option to support OpenMP... -fopenmp
checking how to get verbose linking output from /packages/gcc/12.2.0-nnbserq/bin/gfortran... -v
checking for Fortran libraries of /packages/gcc/12.2.0-nnbserq/bin/gfortran...  -L/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -L/home/th798/lib64 -L/packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0 -L/packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/packages/gcc-8.3.1/geos/3.8.1-j7t4spf/lib -L/packages/gcc-8.3.1/proj/7.1.0/lib -L/packages/gdal/3.3.1/lib -L/packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from /packages/gcc/12.2.0-nnbserq/bin/gcc... -v
checking for C libraries of /packages/gcc/12.2.0-nnbserq/bin/gcc...  -L/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -L/home/th798/lib64 -L/packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0 -L/packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/packages/gcc-8.3.1/geos/3.8.1-j7t4spf/lib -L/packages/gcc-8.3.1/proj/7.1.0/lib -L/packages/gdal/3.3.1/lib -L/packages/gcc/12.2.0-nnbserq/lib/gcc/x86_64-pc-linux-gnu/12.2.0/../../.. -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether /packages/gcc/12.2.0-nnbserq/bin/gfortran appends underscores to external names... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gfortran and /packages/gcc/12.2.0-nnbserq/bin/gcc agree on int and double... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gfortran and /packages/gcc/12.2.0-nnbserq/bin/gcc agree on double complex... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/gfortran option to support OpenMP... -fopenmp
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ accepts -M for generating dependencies... yes
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checking for type of 'hidden' Fortran character lengths... size_t
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checking whether /packages/gcc/12.2.0-nnbserq/bin/g++  supports C++11 features with -std=gnu++11... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++  supports C++14 features with -std=gnu++14... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++  supports C++17 features with -std=gnu++17... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++  supports C++20 features with -std=gnu++20... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++  supports C++23 features with -std=gnu++23... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++  supports C++26 features with -std=gnu++26... no
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checking whether /packages/gcc/12.2.0-nnbserq/bin/g++  supports C++26 features with -std=c++26... no
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++  supports C++26 features with +std=c++26... no
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checking whether /packages/gcc/12.2.0-nnbserq/bin/g++  supports C++26 features by default... no
configure: No compiler with C++26 support was found
checking whether /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 can compile ObjC++... no
checking whether  can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking for /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
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checking whether alloca is declared... yes
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checking whether hypot exists and is declared... yes
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checking whether powl exists and is declared... yes
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checking for library containing connect... none required
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configure: Not using liblapack as it contains BLAS routines
configure: using internal LAPACK sources
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checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
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checking for /packages/gcc/12.2.0-nnbserq/bin/gfortran option to support OpenMP... (cached) -fopenmp
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Configuring src/extra/intl directory
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
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checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by /packages/gcc/12.2.0-nnbserq/bin/gcc... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking for argz.h... yes
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checking for argz_count... yes
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checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.0.4, ok
checking for long long int... yes
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checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
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checking for snprintf... yes
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checking whether _snprintf is declared... no
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checking whether getc_unlocked is declared... yes
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checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/sh
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config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands
configure: WARNING: --with-libdeflate-compression requires libdeflate

R is now configured for x86_64-pc-linux-gnu

  Source directory:            .
  Installation directory:      /home/th798

  C compiler:                  /packages/gcc/12.2.0-nnbserq/bin/gcc  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include
  Fortran fixed-form compiler: /packages/gcc/12.2.0-nnbserq/bin/gfortran  -g -O2

  Default C++ compiler:        /packages/gcc/12.2.0-nnbserq/bin/g++ -std=gnu++17  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include
  Fortran free-form compiler:  /packages/gcc/12.2.0-nnbserq/bin/gfortran  -g -O2
  Obj-C compiler:	        

  Interfaces supported:        X11, tcltk
  External libraries:          pcre2, readline, curl
  Additional capabilities:     PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:             shared BLAS, R profiling, memory profiling

  Capabilities skipped:        
  Options not enabled:         

  Recommended packages:        yes

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creating src/scripts/R.fe
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mkdir -p -- ../../bin
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mkdir -p -- ../../include
/usr/bin/cp Rmath.h0 Rmath.h
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mkdir -p -- ../../../include/R_ext
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make[2]: Entering directory '/projects/genomic-ml/R/R-devel/src/extra'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/extra/blas'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/extra/blas'
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c blas.f -o blas.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c  blas2.f90 -o blas2.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c cmplxblas.f -o cmplxblas.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c  cmplxblas2.f90 -o cmplxblas2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -fopenmp -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o libRblas.so blas.o blas2.o  cmplxblas.o cmplxblas2.o -lgfortran -lm -lquadmath
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/extra/blas'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/extra/blas'
mkdir -p -- /home/th798/R/R-devel/lib
/usr/bin/cp libRblas.so /home/th798/R/R-devel/lib/libRblas.so
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/extra/blas'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/extra/blas'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/extra/tre'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/extra/tre'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/extra/tre'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c regcomp.c -o regcomp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c regerror.c -o regerror.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c regexec.c -o regexec.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tre-ast.c -o tre-ast.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tre-compile.c -o tre-compile.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tre-match-approx.c -o tre-match-approx.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tre-match-backtrack.c -o tre-match-backtrack.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tre-match-parallel.c -o tre-match-parallel.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tre-mem.c -o tre-mem.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tre-parse.c -o tre-parse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tre-stack.c -o tre-stack.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o
ranlib libtre.a
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/extra/tre'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/extra/tre'
make[2]: Leaving directory '/projects/genomic-ml/R/R-devel/src/extra'
make[2]: Entering directory '/projects/genomic-ml/R/R-devel/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/appl'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c integrate.c -o integrate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c interv.c -o interv.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c maxcol.c -o maxcol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c optim.c -o optim.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pretty.c -o pretty.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c uncmin.c -o uncmin.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dchdc.f -o dchdc.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dpbfa.f -o dpbfa.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dpbsl.f -o dpbsl.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dpoco.f -o dpoco.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dpodi.f -o dpodi.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dpofa.f -o dpofa.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dposl.f -o dposl.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dqrdc.f -o dqrdc.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dqrdc2.f -o dqrdc2.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dqrls.f -o dqrls.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dqrsl.f -o dqrsl.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dqrutl.f -o dqrutl.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dsvdc.f -o dsvdc.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dtrco.f -o dtrco.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/appl'
make[2]: Leaving directory '/projects/genomic-ml/R/R-devel/src/appl'
make[2]: Entering directory '/projects/genomic-ml/R/R-devel/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/nmath'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mlutils.c -o mlutils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c d1mach.c -o d1mach.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c i1mach.c -o i1mach.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmax2.c -o fmax2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fmin2.c -o fmin2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fprec.c -o fprec.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fround.c -o fround.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ftrunc.c -o ftrunc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sign.c -o sign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fsign.c -o fsign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c imax2.c -o imax2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c imin2.c -o imin2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chebyshev.c -o chebyshev.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c log1p.c -o log1p.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c lgammacor.c -o lgammacor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gammalims.c -o gammalims.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c stirlerr.c -o stirlerr.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bd0.c -o bd0.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gamma.c -o gamma.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c lgamma.c -o lgamma.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gamma_cody.c -o gamma_cody.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c beta.c -o beta.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c lbeta.c -o lbeta.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c polygamma.c -o polygamma.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cospi.c -o cospi.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bessel_i.c -o bessel_i.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bessel_j.c -o bessel_j.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bessel_k.c -o bessel_k.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bessel_y.c -o bessel_y.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c choose.c -o choose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c snorm.c -o snorm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sexp.c -o sexp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dgamma.c -o dgamma.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pgamma.c -o pgamma.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qgamma.c -o qgamma.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rgamma.c -o rgamma.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dbeta.c -o dbeta.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pbeta.c -o pbeta.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qbeta.c -o qbeta.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbeta.c -o rbeta.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dunif.c -o dunif.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c punif.c -o punif.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qunif.c -o qunif.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c runif.c -o runif.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dnorm.c -o dnorm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pnorm.c -o pnorm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qnorm.c -o qnorm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rnorm.c -o rnorm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dlnorm.c -o dlnorm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c plnorm.c -o plnorm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qlnorm.c -o qlnorm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rlnorm.c -o rlnorm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c df.c -o df.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pf.c -o pf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qf.c -o qf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rf.c -o rf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dnf.c -o dnf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dt.c -o dt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pt.c -o pt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qt.c -o qt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rt.c -o rt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dnt.c -o dnt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dchisq.c -o dchisq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pchisq.c -o pchisq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qchisq.c -o qchisq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rchisq.c -o rchisq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rnchisq.c -o rnchisq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dbinom.c -o dbinom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pbinom.c -o pbinom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qbinom.c -o qbinom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbinom.c -o rbinom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rmultinom.c -o rmultinom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dcauchy.c -o dcauchy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pcauchy.c -o pcauchy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qcauchy.c -o qcauchy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rcauchy.c -o rcauchy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dexp.c -o dexp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pexp.c -o pexp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qexp.c -o qexp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rexp.c -o rexp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dgeom.c -o dgeom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pgeom.c -o pgeom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qgeom.c -o qgeom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rgeom.c -o rgeom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dhyper.c -o dhyper.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c phyper.c -o phyper.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qhyper.c -o qhyper.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rhyper.c -o rhyper.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dnbinom.c -o dnbinom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pnbinom.c -o pnbinom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qnbinom.c -o qnbinom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qnbinom_mu.c -o qnbinom_mu.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rnbinom.c -o rnbinom.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dpois.c -o dpois.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ppois.c -o ppois.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qpois.c -o qpois.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rpois.c -o rpois.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dweibull.c -o dweibull.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pweibull.c -o pweibull.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qweibull.c -o qweibull.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rweibull.c -o rweibull.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dlogis.c -o dlogis.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c plogis.c -o plogis.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qlogis.c -o qlogis.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rlogis.c -o rlogis.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dnchisq.c -o dnchisq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pnchisq.c -o pnchisq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qnchisq.c -o qnchisq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dnbeta.c -o dnbeta.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pnbeta.c -o pnbeta.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qnbeta.c -o qnbeta.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pnf.c -o pnf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pnt.c -o pnt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qnf.c -o qnf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qnt.c -o qnt.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ptukey.c -o ptukey.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qtukey.c -o qtukey.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c toms708.c -o toms708.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c wilcox.c -o wilcox.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/nmath'
make[2]: Leaving directory '/projects/genomic-ml/R/R-devel/src/nmath'
make[2]: Entering directory '/projects/genomic-ml/R/R-devel/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/unix'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Rembedded.c -o Rembedded.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dynload.c -o dynload.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c system.c -o system.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -c sys-unix.c -o sys-unix.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sys-std.c -o sys-std.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/unix'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/unix'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../src/include -I../../src/include  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H    -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -DR_HOME='"/home/th798/R/R-devel"' \
  -o Rscript ./Rscript.c
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/unix'
make[2]: Leaving directory '/projects/genomic-ml/R/R-devel/src/unix'
make[2]: Entering directory '/projects/genomic-ml/R/R-devel/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making altclasses.d from altclasses.c
making altrep.d from altrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making clippath.d from clippath.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making flexiblas.d from flexiblas.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making machine.d from machine.c
making main.d from main.c
making mapply.d from mapply.c
making mask.d from mask.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making patterns.d from patterns.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/main'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Rmain.c -o Rmain.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c CommandLineArgs.c -o CommandLineArgs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Rdynload.c -o Rdynload.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Renviron.c -o Renviron.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c RNG.c -o RNG.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c agrep.c -o agrep.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c altclasses.c -o altclasses.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c altrep.c -o altrep.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c apply.c -o apply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c arithmetic.c -o arithmetic.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c array.c -o array.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c attrib.c -o attrib.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bind.c -o bind.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c builtin.c -o builtin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c character.c -o character.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c clippath.c -o clippath.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coerce.c -o coerce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c colors.c -o colors.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c complex.c -o complex.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c connections.c -o connections.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c context.c -o context.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cum.c -o cum.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dcf.c -o dcf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c datetime.c -o datetime.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c debug.c -o debug.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c deparse.c -o deparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c devices.c -o devices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dotcode.c -o dotcode.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dounzip.c -o dounzip.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dstruct.c -o dstruct.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c duplicate.c -o duplicate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c edit.c -o edit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c engine.c -o engine.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c envir.c -o envir.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c errors.c -o errors.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c eval.c -o eval.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c flexiblas.c -o flexiblas.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c format.c -o format.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gevents.c -o gevents.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gram.c -o gram.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gram-ex.c -o gram-ex.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c graphics.c -o graphics.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c grep.c -o grep.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c identical.c -o identical.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inlined.c -o inlined.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c inspect.c -o inspect.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c internet.c -o internet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c iosupport.c -o iosupport.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c lapack.c -o lapack.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c list.c -o list.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c localecharset.c -o localecharset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c logic.c -o logic.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c machine.c -o machine.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c main.c -o main.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mapply.c -o mapply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mask.c -o mask.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c match.c -o match.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c memory.c -o memory.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c names.c -o names.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c objects.c -o objects.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c options.c -o options.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c paste.c -o paste.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c patterns.c -o patterns.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c platform.c -o platform.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c plot.c -o plot.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c plot3d.c -o plot3d.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c plotmath.c -o plotmath.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c print.c -o print.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c printarray.c -o printarray.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c printvector.c -o printvector.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c printutils.c -o printutils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qsort.c -o qsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c radixsort.c -o radixsort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c random.c -o random.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c raw.c -o raw.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c registration.c -o registration.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c relop.c -o relop.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rlocale.c -o rlocale.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c saveload.c -o saveload.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c scan.c -o scan.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c seq.c -o seq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c serialize.c -o serialize.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sort.c -o sort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c source.c -o source.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c split.c -o split.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sprintf.c -o sprintf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c startup.c -o startup.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subassign.c -o subassign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subscript.c -o subscript.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subset.c -o subset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c summary.c -o summary.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sysutils.c -o sysutils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c times.c -o times.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c unique.c -o unique.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c util.c -o util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c version.c -o version.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c g_alab_her.c -o g_alab_her.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c g_cntrlify.c -o g_cntrlify.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c g_fontdb.c -o g_fontdb.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c g_her_glyph.c -o g_her_glyph.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fPIE  -g -O2  -c xxxpr.f -o xxxpr.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -Wl,--export-dynamic -fopenmp    -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o R.bin Rmain.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a    -L"../../lib" -lRblas -lgfortran -lm -lquadmath   -lreadline  -lpcre2-8 -lzstd -llzma -lbz2 -lz -ltirpc -lgfortran -lm -lquadmath -lrt -ldl -lm -liconv -licuuc -licui18n 
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/main'
mkdir -p -- /home/th798/R/R-devel/bin/exec
/usr/bin/cp R.bin /home/th798/R/R-devel/bin/exec/R
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/main'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/main'
make[2]: Leaving directory '/projects/genomic-ml/R/R-devel/src/main'
make[2]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules/internet'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -fvisibility=hidden -c Rsock.c -o Rsock.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -fvisibility=hidden -c internet.c -o internet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -fvisibility=hidden -c libcurl.c -o libcurl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -fvisibility=hidden -c sock.c -o sock.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include   -fvisibility=hidden -c sockconn.c -o sockconn.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared  -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -L/home/th798/.conda/envs/emacs1/lib -lcurl   
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules/internet'
mkdir -p -- /home/th798/R/R-devel/modules
/usr/bin/cp internet.so /home/th798/R/R-devel/modules/internet.so
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules/internet'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules/internet'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules/internet'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules/lapack'
making Lapack.d from Lapack.c
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules/lapack'
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fpic  -g -O2 -msse2 -mfpmath=sse  -c dlamch.f -o dlamch.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c dlapack.f -o dlapack.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c cmplx.f -o cmplx.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c  la_constants.f90 -o la_constants.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c  dlartg.f90 -o dlartg.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c  la_xisnan.f90 -o la_xisnan.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c  dlassq.f90 -o dlassq.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c  zlartg.f90 -o zlartg.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c  zlassq.f90 -o zlassq.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -fopenmp -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o libRlapack.so dlamch.o dlapack.o cmplx.o dlartg.o dlassq.o la_constants.o la_xisnan.o zlartg.o zlassq.o    -L"../../../lib" -lRblas -lgfortran -lm -lquadmath 
/usr/bin/cp libRlapack.so /home/th798/R/R-devel/lib/libRlapack.so
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules/lapack'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules/lapack'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Lapack.c -o Lapack.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../../src/include -I../../../src/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c  ../../main/flexiblas.c -o flexiblas.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared  -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o lapack.so  Lapack.o  flexiblas.o   -L"../../../lib" -lRlapack -L"../../../lib" -lRblas -lgfortran -lm -lquadmath
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules/lapack'
/usr/bin/cp lapack.so /home/th798/R/R-devel/modules/lapack.so
/home/th798/R/R-devel/lib/libRlapack.so is unchanged
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules/lapack'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules/lapack'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules/lapack'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules/X11'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I/home/th798/.conda/envs/emacs1/include/libpng16 -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I. -I../../../src/include -I../../../src/include  -I/home/th798/.conda/envs/emacs1/include/pango-1.0 -I/home/th798/.conda/envs/emacs1/include/harfbuzz -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/pango-1.0 -I/home/th798/.conda/envs/emacs1/include/fribidi -I/home/th798/.conda/envs/emacs1/include/cairo -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/pixman-1 -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/freetype2 -I/home/th798/.conda/envs/emacs1/include/libpng16 -I/home/th798/.conda/envs/emacs1/include -I../../../src/library/grDevices/src/cairo -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c devX11.c -o devX11.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I/home/th798/.conda/envs/emacs1/include/libpng16 -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I. -I../../../src/include -I../../../src/include  -I/home/th798/.conda/envs/emacs1/include/pango-1.0 -I/home/th798/.conda/envs/emacs1/include/harfbuzz -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/pango-1.0 -I/home/th798/.conda/envs/emacs1/include/fribidi -I/home/th798/.conda/envs/emacs1/include/cairo -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/pixman-1 -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/freetype2 -I/home/th798/.conda/envs/emacs1/include/libpng16 -I/home/th798/.conda/envs/emacs1/include -I../../../src/library/grDevices/src/cairo -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rotated.c -o rotated.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I/home/th798/.conda/envs/emacs1/include/libpng16 -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I. -I../../../src/include -I../../../src/include  -I/home/th798/.conda/envs/emacs1/include/pango-1.0 -I/home/th798/.conda/envs/emacs1/include/harfbuzz -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/pango-1.0 -I/home/th798/.conda/envs/emacs1/include/fribidi -I/home/th798/.conda/envs/emacs1/include/cairo -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/pixman-1 -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/freetype2 -I/home/th798/.conda/envs/emacs1/include/libpng16 -I/home/th798/.conda/envs/emacs1/include -I../../../src/library/grDevices/src/cairo -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rbitmap.c -o rbitmap.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared  -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o R_X11.so devX11.o rotated.o rbitmap.o -L/home/th798/.conda/envs/emacs1/lib -ltiff -L/home/th798/.conda/envs/emacs1/lib -ljpeg -L/home/th798/.conda/envs/emacs1/lib -lpng16 -lz -lSM -lICE -L/home/th798/.conda/envs/emacs1/lib -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt   -lm 
/packages/gcc/12.2.0-nnbserq/bin/gcc -I/home/th798/.conda/envs/emacs1/include/libpng16 -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include -I. -I../../../src/include -I../../../src/include  -I/home/th798/.conda/envs/emacs1/include/pango-1.0 -I/home/th798/.conda/envs/emacs1/include/harfbuzz -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/pango-1.0 -I/home/th798/.conda/envs/emacs1/include/fribidi -I/home/th798/.conda/envs/emacs1/include/cairo -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/pixman-1 -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/freetype2 -I/home/th798/.conda/envs/emacs1/include/libpng16 -I/home/th798/.conda/envs/emacs1/include -I../../../src/library/grDevices/src/cairo -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dataentry.c -o dataentry.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared  -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o R_de.so dataentry.o -lSM -lICE -L/home/th798/.conda/envs/emacs1/lib -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt   -lm 
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules/X11'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/modules/X11'
/usr/bin/cp R_X11.so /home/th798/R/R-devel/modules/R_X11.so
/usr/bin/cp R_de.so /home/th798/R/R-devel/modules/R_de.so
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules/X11'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules/X11'
make[2]: Leaving directory '/projects/genomic-ml/R/R-devel/src/modules'
make[2]: Entering directory '/projects/genomic-ml/R/R-devel/src/library'
mkdir -p -- ../../library
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/profile'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/translations'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/translations'
/usr/bin/cp -R ./inst/ar ./inst/bn ./inst/ca ./inst/da ./inst/de ./inst/en ./inst/en@quot ./inst/en_GB ./inst/es ./inst/fa ./inst/fr ./inst/hi ./inst/hu ./inst/id ./inst/it ./inst/ja ./inst/ko ./inst/lt ./inst/ne ./inst/nn ./inst/pl ./inst/pt_BR ./inst/ru ./inst/sq ./inst/tr ./inst/ur ./inst/zh_CN ./inst/zh_TW ../../../library/translations
/usr/bin/cp DESCRIPTION ../../../library/translations
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/translations'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/base'
building package 'base'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/base'
mkdir -p -- ../../../library/base/demo
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/base'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/base'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tools'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tools'
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making pdscan.d from pdscan.c
making Rsha256.d from Rsha256.c
making sha256.d from sha256.c
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c text.c -o text.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Rmd5.c -o Rmd5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c md5.c -o md5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c signals.c -o signals.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c install.c -o install.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c getfmts.c -o getfmts.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c http.c -o http.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gramLatex.c -o gramLatex.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gramRd.c -o gramRd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pdscan.c -o pdscan.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Rsha256.c -o Rsha256.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sha256.c -o sha256.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o Rsha256.o sha256.o
make[6]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
/usr/bin/cp tools.so ../../../../library/tools/libs/tools.so
make[6]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tools/src'
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tools/src'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tools'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tools'
installing 'sysdata.rda'
WARNING: ignoring environment value of R_HOME
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tools'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tools'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/compiler'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/compiler'
byte-compiling package 'compiler'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/compiler'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/compiler'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/base'
byte-compiling package 'base'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/base'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tools'
byte-compiling package 'tools'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tools'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/utils'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/utils'
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
making hashtab.d from hashtab.c
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c io.c -o io.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c size.c -o size.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sock.c -o sock.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c stubs.c -o stubs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c hashtab.c -o hashtab.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o
make[6]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
/usr/bin/cp utils.so ../../../../library/utils/libs/utils.so
make[6]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/utils/src'
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/utils/src'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/utils'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/utils'
installing 'sysdata.rda'
WARNING: ignoring environment value of R_HOME
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/utils'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/utils'
byte-compiling package 'utils'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/utils'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/utils'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/fonts/Roboto
mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static
mkdir -p -- ../../../library/grDevices/icc
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grDevices'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grDevices'
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making clippath.d from clippath.c
making patterns.d from patterns.c
making mask.d from mask.c
making group.d from group.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c axis_scales.c -o axis_scales.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chull.c -o chull.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c devices.c -o devices.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c stubs.c -o stubs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c colors.c -o colors.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c clippath.c -o clippath.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c patterns.c -o patterns.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mask.c -o mask.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c group.c -o group.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c devCairo.c -o devCairo.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c devPicTeX.c -o devPicTeX.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c devPS.c -o devPS.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c devQuartz.c -o devQuartz.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz
make[6]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
/usr/bin/cp grDevices.so ../../../../library/grDevices/libs/grDevices.so
make[7]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[8]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grDevices/src/cairo'
make[9]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grDevices/src/cairo'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I. -I../../../../../src/include -I../../../../../src/include -I/home/th798/.conda/envs/emacs1/include/pango-1.0 -I/home/th798/.conda/envs/emacs1/include/harfbuzz -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/pango-1.0 -I/home/th798/.conda/envs/emacs1/include/fribidi -I/home/th798/.conda/envs/emacs1/include/cairo -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/glib-2.0 -I/home/th798/.conda/envs/emacs1/lib/glib-2.0/include -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/pixman-1 -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include/freetype2 -I/home/th798/.conda/envs/emacs1/include/libpng16 -I/home/th798/.conda/envs/emacs1/include -I../../../../../src/modules/X11 -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -DHAVE_CONFIG_H   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cairoBM.c -o cairoBM.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared  -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -L/home/th798/.conda/envs/emacs1/lib -ltiff -L/home/th798/.conda/envs/emacs1/lib -ljpeg -L/home/th798/.conda/envs/emacs1/lib -lpng16 -lz -L/home/th798/.conda/envs/emacs1/lib -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng16 -lz -lcairo  -lm 
make[9]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grDevices/src/cairo'
/usr/bin/cp cairo.so ../../../../../library/grDevices/libs
make[8]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grDevices/src/cairo'
make[6]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grDevices/src'
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grDevices/src'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grDevices'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grDevices'
byte-compiling package 'grDevices'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grDevices'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grDevices'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
/usr/bin/cp ./man/figures/mai.pdf ./man/figures/mai.png ./man/figures/oma.pdf ./man/figures/oma.png ./man/figures/pch.pdf ./man/figures/pch.png ./man/figures/pch.svg ../../../library/graphics/help/figures
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/graphics'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/graphics'
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c base.c -o base.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c graphics.c -o graphics.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c par.c -o par.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c plot.c -o plot.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c plot3d.c -o plot3d.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c stem.c -o stem.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o
make[6]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
/usr/bin/cp graphics.so ../../../../library/graphics/libs/graphics.so
make[6]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/graphics/src'
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/graphics/src'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/graphics'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/graphics'
byte-compiling package 'graphics'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/graphics'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/graphics'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
mkdir -p -- ../../../library/stats/doc
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/stats'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/stats'
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kmeans.c -o kmeans.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ansari.c -o ansari.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bandwidths.c -o bandwidths.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chisqsim.c -o chisqsim.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c d2x2xk.c -o d2x2xk.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fexact.c -o fexact.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kendall.c -o kendall.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ks.c -o ks.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c line.c -o line.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c smooth.c -o smooth.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c prho.c -o prho.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c swilk.c -o swilk.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ksmooth.c -o ksmooth.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c loessc.c -o loessc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c monoSpl.c -o monoSpl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c isoreg.c -o isoreg.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Srunmed.c -o Srunmed.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dblcen.c -o dblcen.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c distance.c -o distance.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c hclust-utils.c -o hclust-utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nls.c -o nls.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rWishart.c -o rWishart.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c HoltWinters.c -o HoltWinters.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c PPsum.c -o PPsum.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c arima.c -o arima.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c burg.c -o burg.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c filter.c -o filter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mAR.c -o mAR.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pacf.c -o pacf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c starma.c -o starma.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c port.c -o port.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c family.c -o family.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sbart.c -o sbart.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c approx.c -o approx.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c loglin.c -o loglin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c lowess.c -o lowess.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c massdist.c -o massdist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c splines.c -o splines.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c lm.c -o lm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c complete_cases.c -o complete_cases.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cov.c -o cov.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c deriv.c -o deriv.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fft.c -o fft.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fourier.c -o fourier.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c model.c -o model.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c optim.c -o optim.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c optimize.c -o optimize.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c integrate.c -o integrate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c random.c -o random.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c distn.c -o distn.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c zeroin.c -o zeroin.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rcont.c -o rcont.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c influence.c -o influence.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c bsplvd.f -o bsplvd.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c bvalue.f -o bvalue.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c bvalus.f -o bvalus.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c loessf.f -o loessf.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c ppr.f -o ppr.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c qsbart.f -o qsbart.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c sgram.f -o sgram.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c sinerp.f -o sinerp.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c sslvrg.f -o sslvrg.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c stxwx.f -o stxwx.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c hclust.f -o hclust.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c kmns.f -o kmns.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c eureka.f -o eureka.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c stl.f -o stl.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fpic  -g -O2 -msse2 -mfpmath=sse  -c portsrc.f -o portsrc.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran -fvisibility=hidden -fpic  -g -O2  -c lminfl.f -o lminfl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L../../../../lib -lRlapack -L../../../../lib -lRblas -lgfortran -lm -lquadmath
make[6]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
/usr/bin/cp stats.so ../../../../library/stats/libs/stats.so
make[6]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/stats/src'
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/stats/src'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/stats'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/stats'
byte-compiling package 'stats'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/stats'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/stats'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/datasets'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/datasets'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/methods'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/methods'
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c do_substitute_direct.c -o do_substitute_direct.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c methods_list_dispatch.c -o methods_list_dispatch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c slot.c -o slot.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c class_support.c -o class_support.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tests.c -o tests.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o
make[6]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
/usr/bin/cp methods.so ../../../../library/methods/libs/methods.so
make[6]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/methods/src'
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/methods/src'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/methods'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/methods'
byte-compiling package 'methods'
WARNING: ignoring environment value of R_HOME
initializing class and method definitions ... done
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/methods'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/methods'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grid'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grid'
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grid/src'
making clippath.d from clippath.c
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making mask.d from mask.c
making matrix.d from matrix.c
making path.d from path.c
making register.d from register.c
making state.d from state.c
making typeset.d from typeset.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c clippath.c -o clippath.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gpar.c -o gpar.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c grid.c -o grid.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c just.c -o just.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c layout.c -o layout.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mask.c -o mask.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matrix.c -o matrix.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c path.c -o path.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c register.c -o register.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c state.c -o state.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c typeset.c -o typeset.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c unit.c -o unit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c util.c -o util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c viewport.c -o viewport.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o
make[6]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
/usr/bin/cp grid.so ../../../../library/grid/libs/grid.so
make[6]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grid/src'
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grid/src'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grid'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/grid'
byte-compiling package 'grid'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grid'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/grid'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/splines'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/splines'
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/splines/src'
making splines.d from splines.c
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c splines.c -o splines.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o splines.so splines.o
make[6]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
/usr/bin/cp splines.so ../../../../library/splines/libs/splines.so
make[6]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/splines/src'
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/splines/src'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/splines'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/splines'
byte-compiling package 'splines'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/splines'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/splines'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/stats4'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/stats4'
byte-compiling package 'stats4'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/stats4'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/stats4'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tcltk'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tcltk.c -o tcltk.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/home/th798/.conda/envs/emacs1/include -I/home/th798/.conda/envs/emacs1/include   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tcltk_unix.c -o tcltk_unix.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/home/th798/.conda/envs/emacs1/lib -ltcl8.6 -L/home/th798/.conda/envs/emacs1/lib -ltk8.6 -lX11 -lm
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
/usr/bin/cp tcltk.so ../../../../library/tcltk/libs/tcltk.so
make[5]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tcltk/src'
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byte-compiling package 'tcltk'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tcltk'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/tcltk'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/parallel'
make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/parallel'
make[5]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rngstream.c -o rngstream.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fork.c -o fork.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o parallel.so init.o rngstream.o fork.o
make[6]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
/usr/bin/cp parallel.so ../../../../library/parallel/libs/parallel.so
make[6]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/parallel/src'
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make[4]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/parallel'
byte-compiling package 'parallel'
make[4]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/parallel'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/parallel'
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/base'
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/base'
installing parsed NAMESPACE files
make[2]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library'
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make[1]: Entering directory '/projects/genomic-ml/R/R-devel/tests'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/projects/genomic-ml/R/R-devel/tests'
you should 'make docs' now ...
make[1]: Entering directory '/projects/genomic-ml/R/R-devel/doc'
WARNING: ignoring environment value of R_HOME
creating doc/NEWS
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creating doc/NEWS.pdf
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make[2]: Entering directory '/projects/genomic-ml/R/R-devel/doc/manual'
creating doc/manual/R-FAQ.html
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creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
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make[3]: Entering directory '/projects/genomic-ml/R/R-devel/doc/html'
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make[1]: Entering directory '/projects/genomic-ml/R/R-devel/src/library'
make[2]: Entering directory '/projects/genomic-ml/R/R-devel/src/library'
installing parsed Rd
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library'
WARNING: ignoring environment value of R_HOME
  base
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  stats
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  utils
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  methods
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  graphics
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  grDevices
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  datasets
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  grid
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  tools
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  tcltk
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  splines
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  stats4
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  compiler
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  parallel
make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library'
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building/updating package metadata ...
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make[2]: Entering directory '/projects/genomic-ml/R/R-devel/src/library'
writing package indices
make[3]: Entering directory '/projects/genomic-ml/R/R-devel/src/library'
WARNING: ignoring environment value of R_HOME
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make[3]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library'
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make[1]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library'
make[1]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/Recommended'
make[2]: Entering directory '/projects/genomic-ml/R/R-devel/src/library/Recommended'
begin installing recommended package MASS
WARNING: ignoring environment value of R_HOME
* installing *source* package 'MASS' ...
** this is package 'MASS' version '7.3-65'
** package 'MASS' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpFcwF9E/R.INSTALL3f9ccb1a9f5804/MASS/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c MASS.c -o MASS.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c lqs.c -o lqs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o MASS.so MASS.o lqs.o
make[3]: Leaving directory '/tmp/th798/16230237/RtmpFcwF9E/R.INSTALL3f9ccb1a9f5804/MASS/src'
installing to /projects/genomic-ml/R/R-devel/library/MASS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (MASS)
begin installing recommended package lattice
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* installing *source* package 'lattice' ...
** this is package 'lattice' version '0.22-6'
** package 'lattice' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmprxVw5Z/R.INSTALL3f9d7555389dba/lattice/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c threeDplot.c -o threeDplot.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o lattice.so init.o threeDplot.o
make[3]: Leaving directory '/tmp/th798/16230237/RtmprxVw5Z/R.INSTALL3f9d7555389dba/lattice/src'
installing to /projects/genomic-ml/R/R-devel/library/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lattice)
begin installing recommended package Matrix
WARNING: ignoring environment value of R_HOME
* installing *source* package 'Matrix' ...
** this is package 'Matrix' version '1.7-3'
** package 'Matrix' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Csparse.c -o Csparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c attrib.c -o attrib.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bind.c -o bind.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cholmod-common.c -o cholmod-common.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cholmod-etc.c -o cholmod-etc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coerce.c -o coerce.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cs-etc.c -o cs-etc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dense.c -o dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c determinant.c -o determinant.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c expm.c -o expm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c factor.c -o factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c idz.c -o idz.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c kappa.c -o kappa.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matmult.c -o matmult.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c objects.c -o objects.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c perm.c -o perm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c solve.c -o solve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sparse.c -o sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subassign.c -o subassign.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c subscript.c -o subscript.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils-R.c -o utils-R.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c utils.c -o utils.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c validity.c -o validity.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config"  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c vector.c -o vector.o
cd SuiteSparse/CHOLMOD && make clean all CC="/packages/gcc/12.2.0-nnbserq/bin/gcc" CPPFLAGS="-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I\"/home/th798/R/R-devel/include\" -I\"/home/th798/R/R-devel/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/CHOLMOD'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Check/cholmod_check.c -o Check/cholmod_check.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Check/cholmod_l_check.c -o Check/cholmod_l_check.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Check/cholmod_read.c -o Check/cholmod_read.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Check/cholmod_l_read.c -o Check/cholmod_l_read.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Check/cholmod_write.c -o Check/cholmod_write.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Check/cholmod_l_write.c -o Check/cholmod_l_write.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_amd.c -o Cholesky/cholmod_amd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_amd.c -o Cholesky/cholmod_l_amd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_analyze.c -o Cholesky/cholmod_analyze.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_analyze.c -o Cholesky/cholmod_l_analyze.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_colamd.c -o Cholesky/cholmod_colamd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_colamd.c -o Cholesky/cholmod_l_colamd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_etree.c -o Cholesky/cholmod_etree.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_etree.c -o Cholesky/cholmod_l_etree.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_factorize.c -o Cholesky/cholmod_factorize.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_factorize.c -o Cholesky/cholmod_l_factorize.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_postorder.c -o Cholesky/cholmod_postorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_postorder.c -o Cholesky/cholmod_l_postorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_rcond.c -o Cholesky/cholmod_rcond.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_rcond.c -o Cholesky/cholmod_l_rcond.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_resymbol.c -o Cholesky/cholmod_resymbol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_resymbol.c -o Cholesky/cholmod_l_resymbol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_rowcolcounts.c -o Cholesky/cholmod_rowcolcounts.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_rowcolcounts.c -o Cholesky/cholmod_l_rowcolcounts.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_rowfac.c -o Cholesky/cholmod_rowfac.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_rowfac.c -o Cholesky/cholmod_l_rowfac.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_solve.c -o Cholesky/cholmod_solve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_solve.c -o Cholesky/cholmod_l_solve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_spsolve.c -o Cholesky/cholmod_spsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Cholesky/cholmod_l_spsolve.c -o Cholesky/cholmod_l_spsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_aat.c -o Utility/cholmod_aat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_aat.c -o Utility/cholmod_l_aat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_add.c -o Utility/cholmod_add.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_add.c -o Utility/cholmod_l_add.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_add_size_t.c -o Utility/cholmod_add_size_t.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_add_size_t.c -o Utility/cholmod_l_add_size_t.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_alloc_factor.c -o Utility/cholmod_alloc_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_alloc_factor.c -o Utility/cholmod_l_alloc_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_alloc_work.c -o Utility/cholmod_alloc_work.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_alloc_work.c -o Utility/cholmod_l_alloc_work.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_allocate_dense.c -o Utility/cholmod_allocate_dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_dense.c -o Utility/cholmod_l_allocate_dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_allocate_factor.c -o Utility/cholmod_allocate_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_factor.c -o Utility/cholmod_l_allocate_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_allocate_sparse.c -o Utility/cholmod_allocate_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_sparse.c -o Utility/cholmod_l_allocate_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_allocate_triplet.c -o Utility/cholmod_allocate_triplet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_triplet.c -o Utility/cholmod_l_allocate_triplet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_allocate_work.c -o Utility/cholmod_allocate_work.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_work.c -o Utility/cholmod_l_allocate_work.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_band.c -o Utility/cholmod_band.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_band.c -o Utility/cholmod_l_band.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_band_nnz.c -o Utility/cholmod_band_nnz.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_band_nnz.c -o Utility/cholmod_l_band_nnz.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_calloc.c -o Utility/cholmod_calloc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_calloc.c -o Utility/cholmod_l_calloc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_change_factor.c -o Utility/cholmod_change_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_change_factor.c -o Utility/cholmod_l_change_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_clear_flag.c -o Utility/cholmod_clear_flag.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_clear_flag.c -o Utility/cholmod_l_clear_flag.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_copy.c -o Utility/cholmod_copy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_copy.c -o Utility/cholmod_l_copy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_copy_dense.c -o Utility/cholmod_copy_dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_dense.c -o Utility/cholmod_l_copy_dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_copy_dense2.c -o Utility/cholmod_copy_dense2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_dense2.c -o Utility/cholmod_l_copy_dense2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_copy_factor.c -o Utility/cholmod_copy_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_factor.c -o Utility/cholmod_l_copy_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_copy_sparse.c -o Utility/cholmod_copy_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_sparse.c -o Utility/cholmod_l_copy_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_copy_triplet.c -o Utility/cholmod_copy_triplet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_triplet.c -o Utility/cholmod_l_copy_triplet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_cumsum.c -o Utility/cholmod_cumsum.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_cumsum.c -o Utility/cholmod_l_cumsum.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_dbound.c -o Utility/cholmod_dbound.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_dbound.c -o Utility/cholmod_l_dbound.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_defaults.c -o Utility/cholmod_defaults.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_defaults.c -o Utility/cholmod_l_defaults.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_dense_nnz.c -o Utility/cholmod_dense_nnz.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_dense_nnz.c -o Utility/cholmod_l_dense_nnz.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_dense_to_sparse.c -o Utility/cholmod_dense_to_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_dense_to_sparse.c -o Utility/cholmod_l_dense_to_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_divcomplex.c -o Utility/cholmod_divcomplex.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_divcomplex.c -o Utility/cholmod_l_divcomplex.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_ensure_dense.c -o Utility/cholmod_ensure_dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_ensure_dense.c -o Utility/cholmod_l_ensure_dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_error.c -o Utility/cholmod_error.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_error.c -o Utility/cholmod_l_error.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_eye.c -o Utility/cholmod_eye.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_eye.c -o Utility/cholmod_l_eye.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_factor_to_sparse.c -o Utility/cholmod_factor_to_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_factor_to_sparse.c -o Utility/cholmod_l_factor_to_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_finish.c -o Utility/cholmod_finish.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_finish.c -o Utility/cholmod_l_finish.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_free.c -o Utility/cholmod_free.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_free.c -o Utility/cholmod_l_free.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_free_dense.c -o Utility/cholmod_free_dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_free_dense.c -o Utility/cholmod_l_free_dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_free_factor.c -o Utility/cholmod_free_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_free_factor.c -o Utility/cholmod_l_free_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_free_sparse.c -o Utility/cholmod_free_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_free_sparse.c -o Utility/cholmod_l_free_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_free_triplet.c -o Utility/cholmod_free_triplet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_free_triplet.c -o Utility/cholmod_l_free_triplet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_free_work.c -o Utility/cholmod_free_work.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_free_work.c -o Utility/cholmod_l_free_work.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_hypot.c -o Utility/cholmod_hypot.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_hypot.c -o Utility/cholmod_l_hypot.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_malloc.c -o Utility/cholmod_malloc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_malloc.c -o Utility/cholmod_l_malloc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_maxrank.c -o Utility/cholmod_maxrank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_maxrank.c -o Utility/cholmod_l_maxrank.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_memdebug.c -o Utility/cholmod_memdebug.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_mult_size_t.c -o Utility/cholmod_mult_size_t.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_mult_size_t.c -o Utility/cholmod_l_mult_size_t.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_mult_uint64_t.c -o Utility/cholmod_mult_uint64_t.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_nnz.c -o Utility/cholmod_nnz.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_nnz.c -o Utility/cholmod_l_nnz.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_ones.c -o Utility/cholmod_ones.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_ones.c -o Utility/cholmod_l_ones.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_pack_factor.c -o Utility/cholmod_pack_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_pack_factor.c -o Utility/cholmod_l_pack_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_ptranspose.c -o Utility/cholmod_ptranspose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_ptranspose.c -o Utility/cholmod_l_ptranspose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_realloc.c -o Utility/cholmod_realloc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_realloc.c -o Utility/cholmod_l_realloc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_realloc_multiple.c -o Utility/cholmod_realloc_multiple.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_realloc_multiple.c -o Utility/cholmod_l_realloc_multiple.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_column.c -o Utility/cholmod_reallocate_column.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_column.c -o Utility/cholmod_l_reallocate_column.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_factor.c -o Utility/cholmod_reallocate_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_factor.c -o Utility/cholmod_l_reallocate_factor.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_sparse.c -o Utility/cholmod_reallocate_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_sparse.c -o Utility/cholmod_l_reallocate_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_triplet.c -o Utility/cholmod_reallocate_triplet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_triplet.c -o Utility/cholmod_l_reallocate_triplet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_sbound.c -o Utility/cholmod_sbound.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_sbound.c -o Utility/cholmod_l_sbound.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_score_comp.c -o Utility/cholmod_score_comp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_score_comp.c -o Utility/cholmod_l_score_comp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_set_empty.c -o Utility/cholmod_set_empty.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_set_empty.c -o Utility/cholmod_l_set_empty.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_sort.c -o Utility/cholmod_sort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_sort.c -o Utility/cholmod_l_sort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_sparse_to_dense.c -o Utility/cholmod_sparse_to_dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_sparse_to_dense.c -o Utility/cholmod_l_sparse_to_dense.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_sparse_to_triplet.c -o Utility/cholmod_sparse_to_triplet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_sparse_to_triplet.c -o Utility/cholmod_l_sparse_to_triplet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_speye.c -o Utility/cholmod_speye.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_speye.c -o Utility/cholmod_l_speye.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_spzeros.c -o Utility/cholmod_spzeros.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_spzeros.c -o Utility/cholmod_l_spzeros.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_start.c -o Utility/cholmod_start.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_start.c -o Utility/cholmod_l_start.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_transpose.c -o Utility/cholmod_transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_transpose.c -o Utility/cholmod_l_transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_transpose_sym.c -o Utility/cholmod_transpose_sym.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_transpose_sym.c -o Utility/cholmod_l_transpose_sym.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_transpose_unsym.c -o Utility/cholmod_transpose_unsym.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_transpose_unsym.c -o Utility/cholmod_l_transpose_unsym.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_triplet_to_sparse.c -o Utility/cholmod_triplet_to_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_triplet_to_sparse.c -o Utility/cholmod_l_triplet_to_sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_version.c -o Utility/cholmod_version.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_version.c -o Utility/cholmod_l_version.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_xtype.c -o Utility/cholmod_xtype.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_xtype.c -o Utility/cholmod_l_xtype.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_zeros.c -o Utility/cholmod_zeros.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Utility/cholmod_l_zeros.c -o Utility/cholmod_l_zeros.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_drop.c -o MatrixOps/cholmod_drop.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_drop.c -o MatrixOps/cholmod_l_drop.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_horzcat.c -o MatrixOps/cholmod_horzcat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_horzcat.c -o MatrixOps/cholmod_l_horzcat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_norm.c -o MatrixOps/cholmod_norm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_norm.c -o MatrixOps/cholmod_l_norm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_scale.c -o MatrixOps/cholmod_scale.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_scale.c -o MatrixOps/cholmod_l_scale.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_sdmult.c -o MatrixOps/cholmod_sdmult.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_sdmult.c -o MatrixOps/cholmod_l_sdmult.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_ssmult.c -o MatrixOps/cholmod_ssmult.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_ssmult.c -o MatrixOps/cholmod_l_ssmult.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_submatrix.c -o MatrixOps/cholmod_submatrix.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_submatrix.c -o MatrixOps/cholmod_l_submatrix.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_symmetry.c -o MatrixOps/cholmod_symmetry.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_symmetry.c -o MatrixOps/cholmod_l_symmetry.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_vertcat.c -o MatrixOps/cholmod_vertcat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_vertcat.c -o MatrixOps/cholmod_l_vertcat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Modify/cholmod_rowadd.c -o Modify/cholmod_rowadd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Modify/cholmod_l_rowadd.c -o Modify/cholmod_l_rowadd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Modify/cholmod_rowdel.c -o Modify/cholmod_rowdel.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Modify/cholmod_l_rowdel.c -o Modify/cholmod_l_rowdel.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Modify/cholmod_updown.c -o Modify/cholmod_updown.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Modify/cholmod_l_updown.c -o Modify/cholmod_l_updown.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_camd.c -o Partition/cholmod_camd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_l_camd.c -o Partition/cholmod_l_camd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_ccolamd.c -o Partition/cholmod_ccolamd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_l_ccolamd.c -o Partition/cholmod_l_ccolamd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_csymamd.c -o Partition/cholmod_csymamd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_l_csymamd.c -o Partition/cholmod_l_csymamd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_metis.c -o Partition/cholmod_metis.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_l_metis.c -o Partition/cholmod_l_metis.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_metis_wrapper.c -o Partition/cholmod_metis_wrapper.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_nesdis.c -o Partition/cholmod_nesdis.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Partition/cholmod_l_nesdis.c -o Partition/cholmod_l_nesdis.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Supernodal/cholmod_super_numeric.c -o Supernodal/cholmod_super_numeric.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Supernodal/cholmod_l_super_numeric.c -o Supernodal/cholmod_l_super_numeric.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Supernodal/cholmod_super_solve.c -o Supernodal/cholmod_super_solve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Supernodal/cholmod_l_super_solve.c -o Supernodal/cholmod_l_super_solve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Supernodal/cholmod_super_symbolic.c -o Supernodal/cholmod_super_symbolic.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Supernodal/cholmod_l_super_symbolic.c -o Supernodal/cholmod_l_super_symbolic.o
rm -f CHOLMOD.a
ar -cr CHOLMOD.a Check/cholmod_check.o Check/cholmod_l_check.o Check/cholmod_read.o Check/cholmod_l_read.o Check/cholmod_write.o Check/cholmod_l_write.o Cholesky/cholmod_amd.o Cholesky/cholmod_l_amd.o Cholesky/cholmod_analyze.o Cholesky/cholmod_l_analyze.o Cholesky/cholmod_colamd.o Cholesky/cholmod_l_colamd.o Cholesky/cholmod_etree.o Cholesky/cholmod_l_etree.o Cholesky/cholmod_factorize.o Cholesky/cholmod_l_factorize.o Cholesky/cholmod_postorder.o Cholesky/cholmod_l_postorder.o Cholesky/cholmod_rcond.o Cholesky/cholmod_l_rcond.o Cholesky/cholmod_resymbol.o Cholesky/cholmod_l_resymbol.o Cholesky/cholmod_rowcolcounts.o Cholesky/cholmod_l_rowcolcounts.o Cholesky/cholmod_rowfac.o Cholesky/cholmod_l_rowfac.o Cholesky/cholmod_solve.o Cholesky/cholmod_l_solve.o Cholesky/cholmod_spsolve.o Cholesky/cholmod_l_spsolve.o Utility/cholmod_aat.o Utility/cholmod_l_aat.o Utility/cholmod_add.o Utility/cholmod_l_add.o Utility/cholmod_add_size_t.o Utility/cholmod_l_add_size_t.o Utility/cholmod_alloc_factor.o Utility/cholmod_l_alloc_factor.o Utility/cholmod_alloc_work.o Utility/cholmod_l_alloc_work.o Utility/cholmod_allocate_dense.o Utility/cholmod_l_allocate_dense.o Utility/cholmod_allocate_factor.o Utility/cholmod_l_allocate_factor.o Utility/cholmod_allocate_sparse.o Utility/cholmod_l_allocate_sparse.o Utility/cholmod_allocate_triplet.o Utility/cholmod_l_allocate_triplet.o Utility/cholmod_allocate_work.o Utility/cholmod_l_allocate_work.o Utility/cholmod_band.o Utility/cholmod_l_band.o Utility/cholmod_band_nnz.o Utility/cholmod_l_band_nnz.o Utility/cholmod_calloc.o Utility/cholmod_l_calloc.o Utility/cholmod_change_factor.o Utility/cholmod_l_change_factor.o Utility/cholmod_clear_flag.o Utility/cholmod_l_clear_flag.o Utility/cholmod_copy.o Utility/cholmod_l_copy.o Utility/cholmod_copy_dense.o Utility/cholmod_l_copy_dense.o Utility/cholmod_copy_dense2.o Utility/cholmod_l_copy_dense2.o Utility/cholmod_copy_factor.o Utility/cholmod_l_copy_factor.o Utility/cholmod_copy_sparse.o Utility/cholmod_l_copy_sparse.o Utility/cholmod_copy_triplet.o Utility/cholmod_l_copy_triplet.o Utility/cholmod_cumsum.o Utility/cholmod_l_cumsum.o Utility/cholmod_dbound.o Utility/cholmod_l_dbound.o Utility/cholmod_defaults.o Utility/cholmod_l_defaults.o Utility/cholmod_dense_nnz.o Utility/cholmod_l_dense_nnz.o Utility/cholmod_dense_to_sparse.o Utility/cholmod_l_dense_to_sparse.o Utility/cholmod_divcomplex.o Utility/cholmod_l_divcomplex.o Utility/cholmod_ensure_dense.o Utility/cholmod_l_ensure_dense.o Utility/cholmod_error.o Utility/cholmod_l_error.o Utility/cholmod_eye.o Utility/cholmod_l_eye.o Utility/cholmod_factor_to_sparse.o Utility/cholmod_l_factor_to_sparse.o Utility/cholmod_finish.o Utility/cholmod_l_finish.o Utility/cholmod_free.o Utility/cholmod_l_free.o Utility/cholmod_free_dense.o Utility/cholmod_l_free_dense.o Utility/cholmod_free_factor.o Utility/cholmod_l_free_factor.o Utility/cholmod_free_sparse.o Utility/cholmod_l_free_sparse.o Utility/cholmod_free_triplet.o Utility/cholmod_l_free_triplet.o Utility/cholmod_free_work.o Utility/cholmod_l_free_work.o Utility/cholmod_hypot.o Utility/cholmod_l_hypot.o Utility/cholmod_malloc.o Utility/cholmod_l_malloc.o Utility/cholmod_maxrank.o Utility/cholmod_l_maxrank.o Utility/cholmod_memdebug.o Utility/cholmod_mult_size_t.o Utility/cholmod_l_mult_size_t.o Utility/cholmod_mult_uint64_t.o Utility/cholmod_nnz.o Utility/cholmod_l_nnz.o Utility/cholmod_ones.o Utility/cholmod_l_ones.o Utility/cholmod_pack_factor.o Utility/cholmod_l_pack_factor.o Utility/cholmod_ptranspose.o Utility/cholmod_l_ptranspose.o Utility/cholmod_realloc.o Utility/cholmod_l_realloc.o Utility/cholmod_realloc_multiple.o Utility/cholmod_l_realloc_multiple.o Utility/cholmod_reallocate_column.o Utility/cholmod_l_reallocate_column.o Utility/cholmod_reallocate_factor.o Utility/cholmod_l_reallocate_factor.o Utility/cholmod_reallocate_sparse.o Utility/cholmod_l_reallocate_sparse.o Utility/cholmod_reallocate_triplet.o Utility/cholmod_l_reallocate_triplet.o Utility/cholmod_sbound.o Utility/cholmod_l_sbound.o Utility/cholmod_score_comp.o Utility/cholmod_l_score_comp.o Utility/cholmod_set_empty.o Utility/cholmod_l_set_empty.o Utility/cholmod_sort.o Utility/cholmod_l_sort.o Utility/cholmod_sparse_to_dense.o Utility/cholmod_l_sparse_to_dense.o Utility/cholmod_sparse_to_triplet.o Utility/cholmod_l_sparse_to_triplet.o Utility/cholmod_speye.o Utility/cholmod_l_speye.o Utility/cholmod_spzeros.o Utility/cholmod_l_spzeros.o Utility/cholmod_start.o Utility/cholmod_l_start.o Utility/cholmod_transpose.o Utility/cholmod_l_transpose.o Utility/cholmod_transpose_sym.o Utility/cholmod_l_transpose_sym.o Utility/cholmod_transpose_unsym.o Utility/cholmod_l_transpose_unsym.o Utility/cholmod_triplet_to_sparse.o Utility/cholmod_l_triplet_to_sparse.o Utility/cholmod_version.o Utility/cholmod_l_version.o Utility/cholmod_xtype.o Utility/cholmod_l_xtype.o Utility/cholmod_zeros.o Utility/cholmod_l_zeros.o MatrixOps/cholmod_drop.o MatrixOps/cholmod_l_drop.o MatrixOps/cholmod_horzcat.o MatrixOps/cholmod_l_horzcat.o MatrixOps/cholmod_norm.o MatrixOps/cholmod_l_norm.o MatrixOps/cholmod_scale.o MatrixOps/cholmod_l_scale.o MatrixOps/cholmod_sdmult.o MatrixOps/cholmod_l_sdmult.o MatrixOps/cholmod_ssmult.o MatrixOps/cholmod_l_ssmult.o MatrixOps/cholmod_submatrix.o MatrixOps/cholmod_l_submatrix.o MatrixOps/cholmod_symmetry.o MatrixOps/cholmod_l_symmetry.o MatrixOps/cholmod_vertcat.o MatrixOps/cholmod_l_vertcat.o Modify/cholmod_rowadd.o Modify/cholmod_l_rowadd.o Modify/cholmod_rowdel.o Modify/cholmod_l_rowdel.o Modify/cholmod_updown.o Modify/cholmod_l_updown.o Partition/cholmod_camd.o Partition/cholmod_l_camd.o Partition/cholmod_ccolamd.o Partition/cholmod_l_ccolamd.o Partition/cholmod_csymamd.o Partition/cholmod_l_csymamd.o Partition/cholmod_metis.o Partition/cholmod_l_metis.o Partition/cholmod_metis_wrapper.o Partition/cholmod_nesdis.o Partition/cholmod_l_nesdis.o Supernodal/cholmod_super_numeric.o Supernodal/cholmod_l_super_numeric.o Supernodal/cholmod_super_solve.o Supernodal/cholmod_l_super_solve.o Supernodal/cholmod_super_symbolic.o Supernodal/cholmod_l_super_symbolic.o
ranlib CHOLMOD.a
make[4]: Leaving directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/CHOLMOD'
cd SuiteSparse/CCOLAMD && make clean all CC="/packages/gcc/12.2.0-nnbserq/bin/gcc" CPPFLAGS="-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I\"/home/th798/R/R-devel/include\" -I\"/home/th798/R/R-devel/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/CCOLAMD'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/ccolamd.c -o Source/ccolamd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/ccolamd_l.c -o Source/ccolamd_l.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/ccolamd_version.c -o Source/ccolamd_version.o
rm -f CCOLAMD.a
ar -cr CCOLAMD.a Source/ccolamd.o Source/ccolamd_l.o Source/ccolamd_version.o
ranlib CCOLAMD.a
make[4]: Leaving directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/CCOLAMD'
cd SuiteSparse/CAMD && make clean all CC="/packages/gcc/12.2.0-nnbserq/bin/gcc" CPPFLAGS="-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I\"/home/th798/R/R-devel/include\" -I\"/home/th798/R/R-devel/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/CAMD'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_1.c -o Source/camd_1.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l1.c -o Source/camd_l1.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_2.c -o Source/camd_2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l2.c -o Source/camd_l2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_aat.c -o Source/camd_aat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l_aat.c -o Source/camd_l_aat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_control.c -o Source/camd_control.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l_control.c -o Source/camd_l_control.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_defaults.c -o Source/camd_defaults.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l_defaults.c -o Source/camd_l_defaults.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_dump.c -o Source/camd_dump.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l_dump.c -o Source/camd_l_dump.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_info.c -o Source/camd_info.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l_info.c -o Source/camd_l_info.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_order.c -o Source/camd_order.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l_order.c -o Source/camd_l_order.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_postorder.c -o Source/camd_postorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l_postorder.c -o Source/camd_l_postorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_preprocess.c -o Source/camd_preprocess.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l_preprocess.c -o Source/camd_l_preprocess.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_valid.c -o Source/camd_valid.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_l_valid.c -o Source/camd_l_valid.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/camd_version.c -o Source/camd_version.o
rm -f CAMD.a
ar -cr CAMD.a Source/camd_1.o Source/camd_l1.o Source/camd_2.o Source/camd_l2.o Source/camd_aat.o Source/camd_l_aat.o Source/camd_control.o Source/camd_l_control.o Source/camd_defaults.o Source/camd_l_defaults.o Source/camd_dump.o Source/camd_l_dump.o Source/camd_info.o Source/camd_l_info.o Source/camd_order.o Source/camd_l_order.o Source/camd_postorder.o Source/camd_l_postorder.o Source/camd_preprocess.o Source/camd_l_preprocess.o Source/camd_valid.o Source/camd_l_valid.o Source/camd_version.o
ranlib CAMD.a
make[4]: Leaving directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/CAMD'
cd SuiteSparse/COLAMD && make clean all CC="/packages/gcc/12.2.0-nnbserq/bin/gcc" CPPFLAGS="-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I\"/home/th798/R/R-devel/include\" -I\"/home/th798/R/R-devel/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/COLAMD'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/colamd.c -o Source/colamd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/colamd_l.c -o Source/colamd_l.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/colamd_version.c -o Source/colamd_version.o
rm -f COLAMD.a
ar -cr COLAMD.a Source/colamd.o Source/colamd_l.o Source/colamd_version.o
ranlib COLAMD.a
make[4]: Leaving directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/COLAMD'
cd SuiteSparse/AMD && make clean all CC="/packages/gcc/12.2.0-nnbserq/bin/gcc" CPPFLAGS="-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I\"/home/th798/R/R-devel/include\" -I\"/home/th798/R/R-devel/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/AMD'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_1.c -o Source/amd_1.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l1.c -o Source/amd_l1.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_2.c -o Source/amd_2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l2.c -o Source/amd_l2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_aat.c -o Source/amd_aat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l_aat.c -o Source/amd_l_aat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_control.c -o Source/amd_control.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l_control.c -o Source/amd_l_control.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_defaults.c -o Source/amd_defaults.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l_defaults.c -o Source/amd_l_defaults.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_dump.c -o Source/amd_dump.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l_dump.c -o Source/amd_l_dump.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_info.c -o Source/amd_info.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l_info.c -o Source/amd_l_info.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_order.c -o Source/amd_order.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l_order.c -o Source/amd_l_order.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_post_tree.c -o Source/amd_post_tree.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l_post_tree.c -o Source/amd_l_post_tree.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_postorder.c -o Source/amd_postorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l_postorder.c -o Source/amd_l_postorder.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_preprocess.c -o Source/amd_preprocess.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l_preprocess.c -o Source/amd_l_preprocess.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_valid.c -o Source/amd_valid.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_l_valid.c -o Source/amd_l_valid.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/amd_version.c -o Source/amd_version.o
rm -f AMD.a
ar -cr AMD.a Source/amd_1.o Source/amd_l1.o Source/amd_2.o Source/amd_l2.o Source/amd_aat.o Source/amd_l_aat.o Source/amd_control.o Source/amd_l_control.o Source/amd_defaults.o Source/amd_l_defaults.o Source/amd_dump.o Source/amd_l_dump.o Source/amd_info.o Source/amd_l_info.o Source/amd_order.o Source/amd_l_order.o Source/amd_post_tree.o Source/amd_l_post_tree.o Source/amd_postorder.o Source/amd_l_postorder.o Source/amd_preprocess.o Source/amd_l_preprocess.o Source/amd_valid.o Source/amd_l_valid.o Source/amd_version.o
ranlib AMD.a
make[4]: Leaving directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/AMD'
cd SuiteSparse/CXSparse && make clean all CC="/packages/gcc/12.2.0-nnbserq/bin/gcc" CPPFLAGS="-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I\"/home/th798/R/R-devel/include\" -I\"/home/th798/R/R-devel/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/CXSparse'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_add.c -o Source/cs_add.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_add.c -o Source/cs_dl_add.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_add.c -o Source/cs_ci_add.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_add.c -o Source/cs_cl_add.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_amd.c -o Source/cs_amd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_amd.c -o Source/cs_dl_amd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_amd.c -o Source/cs_ci_amd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_amd.c -o Source/cs_cl_amd.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_chol.c -o Source/cs_chol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_chol.c -o Source/cs_dl_chol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_chol.c -o Source/cs_ci_chol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_chol.c -o Source/cs_cl_chol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cholsol.c -o Source/cs_cholsol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_cholsol.c -o Source/cs_dl_cholsol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_cholsol.c -o Source/cs_ci_cholsol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_cholsol.c -o Source/cs_cl_cholsol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_compress.c -o Source/cs_compress.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_compress.c -o Source/cs_dl_compress.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_compress.c -o Source/cs_ci_compress.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_compress.c -o Source/cs_cl_compress.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_convert.c -o Source/cs_convert.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_counts.c -o Source/cs_counts.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_counts.c -o Source/cs_dl_counts.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_counts.c -o Source/cs_ci_counts.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_counts.c -o Source/cs_cl_counts.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cumsum.c -o Source/cs_cumsum.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_cumsum.c -o Source/cs_dl_cumsum.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_cumsum.c -o Source/cs_ci_cumsum.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_cumsum.c -o Source/cs_cl_cumsum.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dfs.c -o Source/cs_dfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_dfs.c -o Source/cs_dl_dfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_dfs.c -o Source/cs_ci_dfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_dfs.c -o Source/cs_cl_dfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dmperm.c -o Source/cs_dmperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_dmperm.c -o Source/cs_dl_dmperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_dmperm.c -o Source/cs_ci_dmperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_dmperm.c -o Source/cs_cl_dmperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_droptol.c -o Source/cs_droptol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_droptol.c -o Source/cs_dl_droptol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_droptol.c -o Source/cs_ci_droptol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_droptol.c -o Source/cs_cl_droptol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dropzeros.c -o Source/cs_dropzeros.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_dropzeros.c -o Source/cs_dl_dropzeros.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_dropzeros.c -o Source/cs_ci_dropzeros.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_dropzeros.c -o Source/cs_cl_dropzeros.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dupl.c -o Source/cs_dupl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_dupl.c -o Source/cs_dl_dupl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_dupl.c -o Source/cs_ci_dupl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_dupl.c -o Source/cs_cl_dupl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_entry.c -o Source/cs_entry.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_entry.c -o Source/cs_dl_entry.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_entry.c -o Source/cs_ci_entry.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_entry.c -o Source/cs_cl_entry.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ereach.c -o Source/cs_ereach.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_ereach.c -o Source/cs_dl_ereach.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_ereach.c -o Source/cs_ci_ereach.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_ereach.c -o Source/cs_cl_ereach.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_etree.c -o Source/cs_etree.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_etree.c -o Source/cs_dl_etree.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_etree.c -o Source/cs_ci_etree.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_etree.c -o Source/cs_cl_etree.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_fkeep.c -o Source/cs_fkeep.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_fkeep.c -o Source/cs_dl_fkeep.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_fkeep.c -o Source/cs_ci_fkeep.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_fkeep.c -o Source/cs_cl_fkeep.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_gaxpy.c -o Source/cs_gaxpy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_gaxpy.c -o Source/cs_dl_gaxpy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_gaxpy.c -o Source/cs_ci_gaxpy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_gaxpy.c -o Source/cs_cl_gaxpy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_happly.c -o Source/cs_happly.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_happly.c -o Source/cs_dl_happly.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_happly.c -o Source/cs_ci_happly.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_happly.c -o Source/cs_cl_happly.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_house.c -o Source/cs_house.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_house.c -o Source/cs_dl_house.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_house.c -o Source/cs_ci_house.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_house.c -o Source/cs_cl_house.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ipvec.c -o Source/cs_ipvec.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_ipvec.c -o Source/cs_dl_ipvec.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_ipvec.c -o Source/cs_ci_ipvec.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_ipvec.c -o Source/cs_cl_ipvec.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_leaf.c -o Source/cs_leaf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_leaf.c -o Source/cs_dl_leaf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_leaf.c -o Source/cs_ci_leaf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_leaf.c -o Source/cs_cl_leaf.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_load.c -o Source/cs_load.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_load.c -o Source/cs_dl_load.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_load.c -o Source/cs_ci_load.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_load.c -o Source/cs_cl_load.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_lsolve.c -o Source/cs_lsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_lsolve.c -o Source/cs_dl_lsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_lsolve.c -o Source/cs_ci_lsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_lsolve.c -o Source/cs_cl_lsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ltsolve.c -o Source/cs_ltsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_ltsolve.c -o Source/cs_dl_ltsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_ltsolve.c -o Source/cs_ci_ltsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_ltsolve.c -o Source/cs_cl_ltsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_lu.c -o Source/cs_lu.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_lu.c -o Source/cs_dl_lu.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_lu.c -o Source/cs_ci_lu.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_lu.c -o Source/cs_cl_lu.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_lusol.c -o Source/cs_lusol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_lusol.c -o Source/cs_dl_lusol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_lusol.c -o Source/cs_ci_lusol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_lusol.c -o Source/cs_cl_lusol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_malloc.c -o Source/cs_malloc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_malloc.c -o Source/cs_dl_malloc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_malloc.c -o Source/cs_ci_malloc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_malloc.c -o Source/cs_cl_malloc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_maxtrans.c -o Source/cs_maxtrans.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_maxtrans.c -o Source/cs_dl_maxtrans.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_maxtrans.c -o Source/cs_ci_maxtrans.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_maxtrans.c -o Source/cs_cl_maxtrans.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_multiply.c -o Source/cs_multiply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_multiply.c -o Source/cs_dl_multiply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_multiply.c -o Source/cs_ci_multiply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_multiply.c -o Source/cs_cl_multiply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_norm.c -o Source/cs_norm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_norm.c -o Source/cs_dl_norm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_norm.c -o Source/cs_ci_norm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_norm.c -o Source/cs_cl_norm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_permute.c -o Source/cs_permute.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_permute.c -o Source/cs_dl_permute.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_permute.c -o Source/cs_ci_permute.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_permute.c -o Source/cs_cl_permute.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_pinv.c -o Source/cs_pinv.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_pinv.c -o Source/cs_dl_pinv.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_pinv.c -o Source/cs_ci_pinv.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_pinv.c -o Source/cs_cl_pinv.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_post.c -o Source/cs_post.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_post.c -o Source/cs_dl_post.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_post.c -o Source/cs_ci_post.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_post.c -o Source/cs_cl_post.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_print.c -o Source/cs_print.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_print.c -o Source/cs_dl_print.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_print.c -o Source/cs_ci_print.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_print.c -o Source/cs_cl_print.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_pvec.c -o Source/cs_pvec.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_pvec.c -o Source/cs_dl_pvec.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_pvec.c -o Source/cs_ci_pvec.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_pvec.c -o Source/cs_cl_pvec.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_qr.c -o Source/cs_qr.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_qr.c -o Source/cs_dl_qr.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_qr.c -o Source/cs_ci_qr.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_qr.c -o Source/cs_cl_qr.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_qrsol.c -o Source/cs_qrsol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_qrsol.c -o Source/cs_dl_qrsol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_qrsol.c -o Source/cs_ci_qrsol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_qrsol.c -o Source/cs_cl_qrsol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_randperm.c -o Source/cs_randperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_randperm.c -o Source/cs_dl_randperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_randperm.c -o Source/cs_ci_randperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_randperm.c -o Source/cs_cl_randperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_reach.c -o Source/cs_reach.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_reach.c -o Source/cs_dl_reach.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_reach.c -o Source/cs_ci_reach.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_reach.c -o Source/cs_cl_reach.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_scatter.c -o Source/cs_scatter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_scatter.c -o Source/cs_dl_scatter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_scatter.c -o Source/cs_ci_scatter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_scatter.c -o Source/cs_cl_scatter.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_scc.c -o Source/cs_scc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_scc.c -o Source/cs_dl_scc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_scc.c -o Source/cs_ci_scc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_scc.c -o Source/cs_cl_scc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_schol.c -o Source/cs_schol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_schol.c -o Source/cs_dl_schol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_schol.c -o Source/cs_ci_schol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_schol.c -o Source/cs_cl_schol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_spsolve.c -o Source/cs_spsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_spsolve.c -o Source/cs_dl_spsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_spsolve.c -o Source/cs_ci_spsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_spsolve.c -o Source/cs_cl_spsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_sqr.c -o Source/cs_sqr.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_sqr.c -o Source/cs_dl_sqr.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_sqr.c -o Source/cs_ci_sqr.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_sqr.c -o Source/cs_cl_sqr.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_symperm.c -o Source/cs_symperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_symperm.c -o Source/cs_dl_symperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_symperm.c -o Source/cs_ci_symperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_symperm.c -o Source/cs_cl_symperm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_tdfs.c -o Source/cs_tdfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_tdfs.c -o Source/cs_dl_tdfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_tdfs.c -o Source/cs_ci_tdfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_tdfs.c -o Source/cs_cl_tdfs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_transpose.c -o Source/cs_transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_transpose.c -o Source/cs_dl_transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_transpose.c -o Source/cs_ci_transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_transpose.c -o Source/cs_cl_transpose.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_updown.c -o Source/cs_updown.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_updown.c -o Source/cs_dl_updown.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_updown.c -o Source/cs_ci_updown.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_updown.c -o Source/cs_cl_updown.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_usolve.c -o Source/cs_usolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_usolve.c -o Source/cs_dl_usolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_usolve.c -o Source/cs_ci_usolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_usolve.c -o Source/cs_cl_usolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_util.c -o Source/cs_util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_util.c -o Source/cs_dl_util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_util.c -o Source/cs_ci_util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_util.c -o Source/cs_cl_util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_utsolve.c -o Source/cs_utsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_dl_utsolve.c -o Source/cs_dl_utsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_ci_utsolve.c -o Source/cs_ci_utsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cs_cl_utsolve.c -o Source/cs_cl_utsolve.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I./Include -I../SuiteSparse_config -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c Source/cxsparse_version.c -o Source/cxsparse_version.o
rm -f CXSparse.a
ar -cr CXSparse.a Source/cs_add.o Source/cs_dl_add.o Source/cs_ci_add.o Source/cs_cl_add.o Source/cs_amd.o Source/cs_dl_amd.o Source/cs_ci_amd.o Source/cs_cl_amd.o Source/cs_chol.o Source/cs_dl_chol.o Source/cs_ci_chol.o Source/cs_cl_chol.o Source/cs_cholsol.o Source/cs_dl_cholsol.o Source/cs_ci_cholsol.o Source/cs_cl_cholsol.o Source/cs_compress.o Source/cs_dl_compress.o Source/cs_ci_compress.o Source/cs_cl_compress.o Source/cs_convert.o Source/cs_counts.o Source/cs_dl_counts.o Source/cs_ci_counts.o Source/cs_cl_counts.o Source/cs_cumsum.o Source/cs_dl_cumsum.o Source/cs_ci_cumsum.o Source/cs_cl_cumsum.o Source/cs_dfs.o Source/cs_dl_dfs.o Source/cs_ci_dfs.o Source/cs_cl_dfs.o Source/cs_dmperm.o Source/cs_dl_dmperm.o Source/cs_ci_dmperm.o Source/cs_cl_dmperm.o Source/cs_droptol.o Source/cs_dl_droptol.o Source/cs_ci_droptol.o Source/cs_cl_droptol.o Source/cs_dropzeros.o Source/cs_dl_dropzeros.o Source/cs_ci_dropzeros.o Source/cs_cl_dropzeros.o Source/cs_dupl.o Source/cs_dl_dupl.o Source/cs_ci_dupl.o Source/cs_cl_dupl.o Source/cs_entry.o Source/cs_dl_entry.o Source/cs_ci_entry.o Source/cs_cl_entry.o Source/cs_ereach.o Source/cs_dl_ereach.o Source/cs_ci_ereach.o Source/cs_cl_ereach.o Source/cs_etree.o Source/cs_dl_etree.o Source/cs_ci_etree.o Source/cs_cl_etree.o Source/cs_fkeep.o Source/cs_dl_fkeep.o Source/cs_ci_fkeep.o Source/cs_cl_fkeep.o Source/cs_gaxpy.o Source/cs_dl_gaxpy.o Source/cs_ci_gaxpy.o Source/cs_cl_gaxpy.o Source/cs_happly.o Source/cs_dl_happly.o Source/cs_ci_happly.o Source/cs_cl_happly.o Source/cs_house.o Source/cs_dl_house.o Source/cs_ci_house.o Source/cs_cl_house.o Source/cs_ipvec.o Source/cs_dl_ipvec.o Source/cs_ci_ipvec.o Source/cs_cl_ipvec.o Source/cs_leaf.o Source/cs_dl_leaf.o Source/cs_ci_leaf.o Source/cs_cl_leaf.o Source/cs_load.o Source/cs_dl_load.o Source/cs_ci_load.o Source/cs_cl_load.o Source/cs_lsolve.o Source/cs_dl_lsolve.o Source/cs_ci_lsolve.o Source/cs_cl_lsolve.o Source/cs_ltsolve.o Source/cs_dl_ltsolve.o Source/cs_ci_ltsolve.o Source/cs_cl_ltsolve.o Source/cs_lu.o Source/cs_dl_lu.o Source/cs_ci_lu.o Source/cs_cl_lu.o Source/cs_lusol.o Source/cs_dl_lusol.o Source/cs_ci_lusol.o Source/cs_cl_lusol.o Source/cs_malloc.o Source/cs_dl_malloc.o Source/cs_ci_malloc.o Source/cs_cl_malloc.o Source/cs_maxtrans.o Source/cs_dl_maxtrans.o Source/cs_ci_maxtrans.o Source/cs_cl_maxtrans.o Source/cs_multiply.o Source/cs_dl_multiply.o Source/cs_ci_multiply.o Source/cs_cl_multiply.o Source/cs_norm.o Source/cs_dl_norm.o Source/cs_ci_norm.o Source/cs_cl_norm.o Source/cs_permute.o Source/cs_dl_permute.o Source/cs_ci_permute.o Source/cs_cl_permute.o Source/cs_pinv.o Source/cs_dl_pinv.o Source/cs_ci_pinv.o Source/cs_cl_pinv.o Source/cs_post.o Source/cs_dl_post.o Source/cs_ci_post.o Source/cs_cl_post.o Source/cs_print.o Source/cs_dl_print.o Source/cs_ci_print.o Source/cs_cl_print.o Source/cs_pvec.o Source/cs_dl_pvec.o Source/cs_ci_pvec.o Source/cs_cl_pvec.o Source/cs_qr.o Source/cs_dl_qr.o Source/cs_ci_qr.o Source/cs_cl_qr.o Source/cs_qrsol.o Source/cs_dl_qrsol.o Source/cs_ci_qrsol.o Source/cs_cl_qrsol.o Source/cs_randperm.o Source/cs_dl_randperm.o Source/cs_ci_randperm.o Source/cs_cl_randperm.o Source/cs_reach.o Source/cs_dl_reach.o Source/cs_ci_reach.o Source/cs_cl_reach.o Source/cs_scatter.o Source/cs_dl_scatter.o Source/cs_ci_scatter.o Source/cs_cl_scatter.o Source/cs_scc.o Source/cs_dl_scc.o Source/cs_ci_scc.o Source/cs_cl_scc.o Source/cs_schol.o Source/cs_dl_schol.o Source/cs_ci_schol.o Source/cs_cl_schol.o Source/cs_spsolve.o Source/cs_dl_spsolve.o Source/cs_ci_spsolve.o Source/cs_cl_spsolve.o Source/cs_sqr.o Source/cs_dl_sqr.o Source/cs_ci_sqr.o Source/cs_cl_sqr.o Source/cs_symperm.o Source/cs_dl_symperm.o Source/cs_ci_symperm.o Source/cs_cl_symperm.o Source/cs_tdfs.o Source/cs_dl_tdfs.o Source/cs_ci_tdfs.o Source/cs_cl_tdfs.o Source/cs_transpose.o Source/cs_dl_transpose.o Source/cs_ci_transpose.o Source/cs_cl_transpose.o Source/cs_updown.o Source/cs_dl_updown.o Source/cs_ci_updown.o Source/cs_cl_updown.o Source/cs_usolve.o Source/cs_dl_usolve.o Source/cs_ci_usolve.o Source/cs_cl_usolve.o Source/cs_util.o Source/cs_dl_util.o Source/cs_ci_util.o Source/cs_cl_util.o Source/cs_utsolve.o Source/cs_dl_utsolve.o Source/cs_ci_utsolve.o Source/cs_cl_utsolve.o Source/cxsparse_version.o
ranlib CXSparse.a
make[4]: Leaving directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/CXSparse'
cd SuiteSparse/SuiteSparse_config && make clean all CC="/packages/gcc/12.2.0-nnbserq/bin/gcc" CPPFLAGS="-I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I\"/home/th798/R/R-devel/include\" -I\"/home/th798/R/R-devel/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib"
make[4]: Entering directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/SuiteSparse_config'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include -I"/home/th798/R/R-devel/include" -I"/home/th798/R/R-devel/include" -DNDEBUG -DNPRINT -DNTIMER -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -fpic -fvisibility=hidden -c SuiteSparse_config.c -o SuiteSparse_config.o
rm -f SuiteSparse_config.a
ar -cr SuiteSparse_config.a SuiteSparse_config.o
ranlib SuiteSparse_config.a
make[4]: Leaving directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src/SuiteSparse/SuiteSparse_config'
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o Matrix.so Csparse.o attrib.o bind.o cholmod-common.o cholmod-etc.o coerce.o cs-etc.o dense.o determinant.o expm.o factor.o idz.o init.o kappa.o matmult.o objects.o perm.o solve.o sparse.o subassign.o subscript.o utils-R.o utils.o validity.o vector.o SuiteSparse/CHOLMOD/CHOLMOD.a SuiteSparse/CCOLAMD/CCOLAMD.a SuiteSparse/CAMD/CAMD.a SuiteSparse/COLAMD/COLAMD.a SuiteSparse/AMD/AMD.a SuiteSparse/CXSparse/CXSparse.a SuiteSparse/SuiteSparse_config/SuiteSparse_config.a -L/home/th798/R/R-devel/lib -lRlapack -L/home/th798/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[3]: Leaving directory '/tmp/th798/16230237/RtmpJSEpxK/R.INSTALL3f9ef7776fc872/Matrix/src'
installing to /projects/genomic-ml/R/R-devel/library/Matrix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'chol2inv' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix'
Creating a generic function for 'diag' from package 'base' in package 'Matrix'
Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix'
Creating a generic function for 'drop' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csc","RsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.coo","RsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","sparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","sparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","sparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"Matrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"Matrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"Matrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"graphAM","TsparseMatrix"': no definition for class "graphAM"
in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","RsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","TsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","sparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph"
in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL"
in method for 'coerce' with signature '"Matrix","graphNEL"': no definition for class "graphNEL"
in method for 'coerce' with signature '"Matrix","graph"': no definition for class "graph"
Creating a generic function for 'colSums' from package 'base' in package 'Matrix'
Creating a generic function for 'colMeans' from package 'base' in package 'Matrix'
Creating a generic function for 'rowSums' from package 'base' in package 'Matrix'
Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix'
Creating a generic function for 'diag<-' from package 'base' in package 'Matrix'
Creating a generic function for 'unname' from package 'base' in package 'Matrix'
Creating a generic function for 'norm' from package 'base' in package 'Matrix'
Creating a generic function for 'rcond' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'rcond' from package 'base' in package 'Matrix'
Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix'
Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.X' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
Creating a generic function for 'toeplitz' from 'stats' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix'
Creating a generic function for 'which' from package 'base' in package 'Matrix'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Matrix)
begin installing recommended package nlme
WARNING: ignoring environment value of R_HOME
* installing *source* package 'nlme' ...
** this is package 'nlme' version '3.1-167'
** package 'nlme' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
using Fortran compiler: 'GNU Fortran (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpWIXH51/R.INSTALL3faa1a175e844c/nlme/src'
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c chol.f -o chol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c corStruct.c -o corStruct.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gnls.c -o gnls.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matrix.c -o matrix.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nlOptimizer.c -o nlOptimizer.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nlme.c -o nlme.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nlmefit.c -o nlmefit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pdMat.c -o pdMat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fvisibility=hidden -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pythag.c -o pythag.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c rs.f -o rs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath
make[3]: Leaving directory '/tmp/th798/16230237/RtmpWIXH51/R.INSTALL3faa1a175e844c/nlme/src'
installing to /projects/genomic-ml/R/R-devel/library/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (nlme)
begin installing recommended package survival
WARNING: ignoring environment value of R_HOME
* installing *source* package 'survival' ...
** this is package 'survival' version '3.8-3'
** package 'survival' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpTprMtT/R.INSTALL3fab5a6c89a2cc/survival/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c agexact.c -o agexact.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c agfit4.c -o agfit4.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c agfit5.c -o agfit5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c agmart.c -o agmart.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c agmart3.c -o agmart3.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c agscore2.c -o agscore2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c agscore3.c -o agscore3.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c agsurv4.c -o agsurv4.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c agsurv5.c -o agsurv5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cdecomp.c -o cdecomp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chinv2.c -o chinv2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chinv3.c -o chinv3.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cholesky2.c -o cholesky2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cholesky3.c -o cholesky3.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cholesky5.c -o cholesky5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chsolve2.c -o chsolve2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chsolve3.c -o chsolve3.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c chsolve5.c -o chsolve5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c collapse.c -o collapse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c concordance1.c -o concordance1.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c concordance3.c -o concordance3.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c concordance5.c -o concordance5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c cox_Rcallback.c -o cox_Rcallback.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxcount1.c -o coxcount1.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxdetail.c -o coxdetail.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxexact.c -o coxexact.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxfit5.c -o coxfit5.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxfit6.c -o coxfit6.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxmart.c -o coxmart.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxmart2.c -o coxmart2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxph_wtest.c -o coxph_wtest.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxsafe.c -o coxsafe.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxscho.c -o coxscho.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxscore2.c -o coxscore2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxsurv1.c -o coxsurv1.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxsurv2.c -o coxsurv2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxsurv3.c -o coxsurv3.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxsurv4.c -o coxsurv4.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dmatrix.c -o dmatrix.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c doloop.c -o doloop.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fastkm.c -o fastkm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c finegray.c -o finegray.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gchol.c -o gchol.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c multicheck.c -o multicheck.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c norisk.c -o norisk.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pyears1.c -o pyears1.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pyears2.c -o pyears2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pyears3b.c -o pyears3b.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pystep.c -o pystep.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c residcsum.c -o residcsum.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survConcordance.c -o survConcordance.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survdiff2.c -o survdiff2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survfit4.c -o survfit4.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survfitaj.c -o survfitaj.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survfitkm.c -o survfitkm.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survfitresid.c -o survfitresid.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survpenal.c -o survpenal.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survreg6.c -o survreg6.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survreg7.c -o survreg7.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survregc1.c -o survregc1.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survregc2.c -o survregc2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c survsplit.c -o survsplit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tmerge.c -o tmerge.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c twoclust.c -o twoclust.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c zph1.c -o zph1.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c zph2.c -o zph2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agscore3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o coxsurv3.o coxsurv4.o dmatrix.o doloop.o fastkm.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o residcsum.o survConcordance.o survdiff2.o survfit4.o survfitaj.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o twoclust.o zph1.o zph2.o
make[3]: Leaving directory '/tmp/th798/16230237/RtmpTprMtT/R.INSTALL3fab5a6c89a2cc/survival/src'
installing to /projects/genomic-ml/R/R-devel/library/survival/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (survival)
begin installing recommended package boot
WARNING: ignoring environment value of R_HOME
* installing *source* package 'boot' ...
** this is package 'boot' version '1.3-31'
** package 'boot' successfully unpacked and MD5 sums checked
** using non-staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (boot)
begin installing recommended package cluster
WARNING: ignoring environment value of R_HOME
* installing *source* package 'cluster' ...
** this is package 'cluster' version '2.1.8.1'
** package 'cluster' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/Rtmp5F520r/R.INSTALL3fae7662fe55a1/cluster/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c clara.c -o clara.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c daisy.c -o daisy.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dysta.c -o dysta.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fanny.c -o fanny.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mona.c -o mona.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pam.c -o pam.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sildist.c -o sildist.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c spannel.c -o spannel.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c twins.c -o twins.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o
make[3]: Leaving directory '/tmp/th798/16230237/Rtmp5F520r/R.INSTALL3fae7662fe55a1/cluster/src'
installing to /projects/genomic-ml/R/R-devel/library/cluster/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (cluster)
begin installing recommended package codetools
WARNING: ignoring environment value of R_HOME
* installing *source* package 'codetools' ...
** this is package 'codetools' version '0.2-20'
** package 'codetools' successfully unpacked and MD5 sums checked
** using non-staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (codetools)
begin installing recommended package foreign
WARNING: ignoring environment value of R_HOME
* installing *source* package 'foreign' ...
** this is package 'foreign' version '0.8-89'
** package 'foreign' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpiOvvt7/R.INSTALL3faf4ae202bc/foreign/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c R_systat.c -o R_systat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Rdbfread.c -o Rdbfread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Rdbfwrite.c -o Rdbfwrite.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c SASxport.c -o SASxport.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c avl.c -o avl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dbfopen.c -o dbfopen.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c file-handle.c -o file-handle.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c format.c -o format.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c minitab.c -o minitab.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pfm-read.c -o pfm-read.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sfm-read.c -o sfm-read.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c spss.c -o spss.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c stataread.c -o stataread.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o
make[3]: Leaving directory '/tmp/th798/16230237/RtmpiOvvt7/R.INSTALL3faf4ae202bc/foreign/src'
installing to /projects/genomic-ml/R/R-devel/library/foreign/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (foreign)
begin installing recommended package KernSmooth
WARNING: ignoring environment value of R_HOME
* installing *source* package 'KernSmooth' ...
** this is package 'KernSmooth' version '2.23-26'
** package 'KernSmooth' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
using Fortran compiler: 'GNU Fortran (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpwTHabO/R.INSTALL3fafd21176606b/KernSmooth/src'
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c blkest.f -o blkest.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c cp.f -o cp.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c dgedi.f -o dgedi.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c dgefa.f -o dgefa.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c dgesl.f -o dgesl.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c linbin.f -o linbin.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c linbin2D.f -o linbin2D.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c locpoly.f -o locpoly.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c rlbin.f -o rlbin.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c sdiag.f -o sdiag.o
/packages/gcc/12.2.0-nnbserq/bin/gfortran  -fpic  -g -O2  -c sstdiag.f -o sstdiag.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/home/th798/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[3]: Leaving directory '/tmp/th798/16230237/RtmpwTHabO/R.INSTALL3fafd21176606b/KernSmooth/src'
installing to /projects/genomic-ml/R/R-devel/library/KernSmooth/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KernSmooth)
begin installing recommended package rpart
WARNING: ignoring environment value of R_HOME
* installing *source* package 'rpart' ...
** this is package 'rpart' version '4.1.24'
** package 'rpart' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpUObQv3/R.INSTALL3fb04c207a0538/rpart/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c anova.c -o anova.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c anovapred.c -o anovapred.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c branch.c -o branch.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c bsplit.c -o bsplit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c choose_surg.c -o choose_surg.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c fix_cp.c -o fix_cp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c free_tree.c -o free_tree.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gini.c -o gini.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c graycode.c -o graycode.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c insert_split.c -o insert_split.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c make_cp_list.c -o make_cp_list.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c make_cp_table.c -o make_cp_table.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mysort.c -o mysort.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nodesplit.c -o nodesplit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c partition.c -o partition.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c poisson.c -o poisson.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pred_rpart.c -o pred_rpart.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c print_tree.c -o print_tree.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rpart.c -o rpart.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rpart_callback.c -o rpart_callback.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rpartexp.c -o rpartexp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rpartexp2.c -o rpartexp2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rpcountup.c -o rpcountup.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rpmatrix.c -o rpmatrix.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rundown.c -o rundown.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c rundown2.c -o rundown2.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c surrogate.c -o surrogate.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c usersplit.c -o usersplit.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c xpred.c -o xpred.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c xval.c -o xval.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o
make[3]: Leaving directory '/tmp/th798/16230237/RtmpUObQv3/R.INSTALL3fb04c207a0538/rpart/src'
installing to /projects/genomic-ml/R/R-devel/library/rpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rpart)
begin installing recommended package class
WARNING: ignoring environment value of R_HOME
* installing *source* package 'class' ...
** this is package 'class' version '7.3-23'
** package 'class' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpJ5quER/R.INSTALL3fb106507d8191/class/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c class.c -o class.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o class.so class.o
make[3]: Leaving directory '/tmp/th798/16230237/RtmpJ5quER/R.INSTALL3fb106507d8191/class/src'
installing to /projects/genomic-ml/R/R-devel/library/class/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (class)
begin installing recommended package nnet
WARNING: ignoring environment value of R_HOME
* installing *source* package 'nnet' ...
** this is package 'nnet' version '7.3-20'
** package 'nnet' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpdY8kzh/R.INSTALL3fb15045985358/nnet/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c nnet.c -o nnet.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o nnet.so nnet.o
make[3]: Leaving directory '/tmp/th798/16230237/RtmpdY8kzh/R.INSTALL3fb15045985358/nnet/src'
installing to /projects/genomic-ml/R/R-devel/library/nnet/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (nnet)
begin installing recommended package spatial
WARNING: ignoring environment value of R_HOME
* installing *source* package 'spatial' ...
** this is package 'spatial' version '7.3-18'
** package 'spatial' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpYB5LbO/R.INSTALL3fb1cc4013eeab/spatial/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c krc.c -o krc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c pps.c -o pps.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o spatial.so init.o krc.o pps.o
make[3]: Leaving directory '/tmp/th798/16230237/RtmpYB5LbO/R.INSTALL3fb1cc4013eeab/spatial/src'
installing to /projects/genomic-ml/R/R-devel/library/spatial/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (spatial)
begin installing recommended package mgcv
WARNING: ignoring environment value of R_HOME
* installing *source* package 'mgcv' ...
** this is package 'mgcv' version '1.9-1'
** package 'mgcv' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[3]: Entering directory '/tmp/th798/16230237/RtmpCndSQR/R.INSTALL3fb2d2524ed6ed/mgcv/src'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c coxph.c -o coxph.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c davies.c -o davies.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c discrete.c -o discrete.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c gdi.c -o gdi.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c init.c -o init.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c magic.c -o magic.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mat.c -o mat.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c matrix.c -o matrix.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mgcv.c -o mgcv.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c misc.c -o misc.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c mvn.c -o mvn.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c ncv.c -o ncv.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c qp.c -o qp.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c soap.c -o soap.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sparse-smooth.c -o sparse-smooth.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sparse.c -o sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include   -fopenmp -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c tprs.c -o tprs.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o ncv.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -L/home/th798/R/R-devel/lib -lRlapack -L/home/th798/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[3]: Leaving directory '/tmp/th798/16230237/RtmpCndSQR/R.INSTALL3fb2d2524ed6ed/mgcv/src'
installing to /projects/genomic-ml/R/R-devel/library/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (mgcv)
make[2]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/Recommended'
make[1]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library/Recommended'
make[1]: Entering directory '/projects/genomic-ml/R/R-devel/src/library'
building/updating vignettes for package 'grid' ...
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
building/updating vignettes for package 'stats' ...
make[1]: Leaving directory '/projects/genomic-ml/R/R-devel/src/library'
make[1]: Entering directory '/projects/genomic-ml/R/R-devel'
configuring Java ...
WARNING: ignoring environment value of R_HOME
Java interpreter : /usr/bin/java
Java version     : 1.8.0_442
Java home path   : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
using C compiler: 'gcc (Spack GCC) 12.2.0'
make[2]: Entering directory '/tmp/th798/16230237/Rjavareconf.zO9LaC'
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre/../include/linux  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c conftest.c -o conftest.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o conftest.so conftest.o -L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre/lib/amd64/server -ljvm
make[2]: Leaving directory '/tmp/th798/16230237/Rjavareconf.zO9LaC'


JAVA_HOME        : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre
Java library path: $(JAVA_HOME)/lib/amd64/server
JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
Updating Java configuration in /home/th798/R/R-devel
Done.

make[1]: Leaving directory '/projects/genomic-ml/R/R-devel'
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-devel/bin/R -e 'install.packages(\"BiocManager\")' 2>&1"
WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-04-01 r88091) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> install.packages("BiocManager")
trying URL 'http://cloud.r-project.org/src/contrib/BiocManager_1.30.25.tar.gz'
Content type 'application/x-gzip' length 593414 bytes (579 KB)
==================================================
downloaded 579 KB

Loading required package: data.table
* installing *source* package ‘BiocManager’ ...
** this is package ‘BiocManager’ version ‘1.30.25’
** package ‘BiocManager’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Loading required package: data.table
** help
*** installing help indices
** building package indices
Loading required package: data.table
** installing vignettes
** testing if installed package can be loaded from temporary location
Loading required package: data.table
** testing if installed package can be loaded from final location
Loading required package: data.table
** testing if installed package keeps a record of temporary installation path
* DONE (BiocManager)

The downloaded source packages are in
	‘/tmp/th798/16230237/Rtmpd2QNar/downloaded_packages’
> 
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-devel/bin/R -e 'install.packages(\"Rmpi\",configure.args=\"--with-mpi=/packages/openmpi/4.1.7\")' 2>&1"
WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-04-01 r88091) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> install.packages("Rmpi",configure.args="--with-mpi=/packages/openmpi/4.1.7")
trying URL 'http://cloud.r-project.org/src/contrib/Rmpi_0.7-3.3.tar.gz'
Content type 'application/x-gzip' length 107508 bytes (104 KB)
==================================================
downloaded 104 KB

Loading required package: data.table
* installing *source* package ‘Rmpi’ ...
** this is package ‘Rmpi’ version ‘0.7-3.3’
** package ‘Rmpi’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... /packages/gcc/12.2.0-nnbserq/bin/gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/gcc option to enable C11 features... none needed
Trying to find mpi.h ...
Found in /packages/openmpi/4.1.7/include
Trying to find libmpi.so or libmpich.a ...
Found libmpi in /packages/openmpi/4.1.7/lib
checking for orted... yes
checking for prted... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (Spack GCC) 12.2.0’
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/packages/openmpi/4.1.7/include  -DMPI2 -DOPENMPI  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Rmpi.c -o Rmpi.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/packages/openmpi/4.1.7/include  -DMPI2 -DOPENMPI  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c conversion.c -o conversion.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/packages/openmpi/4.1.7/include  -DMPI2 -DOPENMPI  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c internal.c -o internal.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o Rmpi.so Rmpi.o conversion.o internal.o -L/packages/openmpi/4.1.7/lib -lmpi
installing to /projects/genomic-ml/R/R-devel/library/00LOCK-Rmpi/00new/Rmpi/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
Loading required package: data.table
** help
*** installing help indices
** building package indices
Loading required package: data.table
** testing if installed package can be loaded from temporary location
Loading required package: data.table
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Loading required package: data.table
** testing if installed package keeps a record of temporary installation path
* DONE (Rmpi)

The downloaded source packages are in
	‘/tmp/th798/16230237/RtmpasSNWx/downloaded_packages’
> 
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-devel/bin/R -e 'install.packages(\"RODBC\",configure.args=\"--with-odbc-manager=odbc\")' 2>&1"
WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-04-01 r88091) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> install.packages("RODBC",configure.args="--with-odbc-manager=odbc")
trying URL 'http://cloud.r-project.org/src/contrib/RODBC_1.3-26.tar.gz'
Content type 'application/x-gzip' length 931107 bytes (909 KB)
==================================================
downloaded 909 KB

Loading required package: data.table
* installing *source* package ‘RODBC’ ...
** this is package ‘RODBC’ version ‘1.3-26’
** package ‘RODBC’ successfully unpacked and MD5 sums checked
** using staged installation
checking for odbc_config... /home/th798/.conda/envs/emacs1/bin/odbc_config
checking for gcc... /packages/gcc/12.2.0-nnbserq/bin/gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sql.h... yes
checking for sqlext.h... yes
checking for library containing SQLTables... -lodbc
checking for SQLLEN... yes
checking for SQLULEN... yes
checking size of long... 8
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
using C compiler: ‘gcc (Spack GCC) 12.2.0’
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I. -DHAVE_UNISTD_H -DHAVE_PWD_H -DHAVE_SYS_TYPES_H -DHAVE_LONG_LONG -DSIZEOF_LONG_INT=8 -I/home/th798/.conda/envs/emacs1/include   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c RODBC.c -o RODBC.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o RODBC.so RODBC.o -lodbc -L/home/th798/.conda/envs/emacs1/lib
installing to /projects/genomic-ml/R/R-devel/library/00LOCK-RODBC/00new/RODBC/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Loading required package: data.table
** help
*** installing help indices
** building package indices
Loading required package: data.table
** installing vignettes
** testing if installed package can be loaded from temporary location
Loading required package: data.table
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Loading required package: data.table
** testing if installed package keeps a record of temporary installation path
* DONE (RODBC)

The downloaded source packages are in
	‘/tmp/th798/16230237/RtmplkbvTX/downloaded_packages’
> 
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-devel/bin/R -e 'install.packages(\"slam\");install.packages(\"~/R/Rcplex\",repos=NULL,configure.args=\"--with-cplex-dir=/home/th798/cplex\")' 2>&1"
WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-04-01 r88091) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> install.packages("slam");install.packages("~/R/Rcplex",repos=NULL,configure.args="--with-cplex-dir=/home/th798/cplex")
trying URL 'http://cloud.r-project.org/src/contrib/slam_0.1-55.tar.gz'
Content type 'application/x-gzip' length 55018 bytes (53 KB)
==================================================
downloaded 53 KB

Loading required package: data.table
* installing *source* package ‘slam’ ...
** this is package ‘slam’ version ‘0.1-55’
** package ‘slam’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Spack GCC) 12.2.0’
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c apply.c -o apply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dll.c -o dll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c grouped.c -o grouped.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sparse.c -o sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c util.c -o util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o slam.so apply.o dll.o grouped.o sparse.o util.o -L/home/th798/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
installing to /projects/genomic-ml/R/R-devel/library/00LOCK-slam/00new/slam/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Loading required package: data.table
** help
*** installing help indices
** building package indices
Loading required package: data.table
** testing if installed package can be loaded from temporary location
Loading required package: data.table
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Loading required package: data.table
** testing if installed package keeps a record of temporary installation path
* DONE (slam)

The downloaded source packages are in
	‘/tmp/th798/16230237/Rtmp3h8sLl/downloaded_packages’
Loading required package: data.table
* installing *source* package ‘Rcplex’ ...
** this is package ‘Rcplex’ version ‘0.3-6’
file ‘src/Rcplex_QCP.c’ has the wrong MD5 checksum
** using staged installation
checking for gawk... gawk
'config' variable 'CPP' is defunct
checking for gcc... /packages/gcc/12.2.0-nnbserq/bin/gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... /packages/gcc/12.2.0-nnbserq/bin/gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking ilcplex/cplex.h usability... yes
checking ilcplex/cplex.h presence... yes
checking for ilcplex/cplex.h... yes
checking for library containing CPXversion... none required
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (Spack GCC) 12.2.0’
make: Nothing to be done for 'all'.
installing to /projects/genomic-ml/R/R-devel/library/00LOCK-Rcplex/00new/Rcplex/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Loading required package: data.table
** help
*** installing help indices
** building package indices
Loading required package: data.table
** testing if installed package can be loaded from temporary location
Loading required package: data.table
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Loading required package: data.table
** testing if installed package keeps a record of temporary installation path
* DONE (Rcplex)
> 
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-devel/bin/R -e 'options(repos=c(if(requireNamespace(\"BiocManager\"))BiocManager::repositories(),CRAN=\"http://cloud.r-project.org\"));dep <- read.csv(\"missing.deps.csv\")$dep;install.packages(dep)' 2>&1"
WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-04-01 r88091) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> options(repos=c(if(requireNamespace("BiocManager"))BiocManager::repositories(),CRAN="http://cloud.r-project.org"));dep <- read.csv("missing.deps.csv")$dep;install.packages(dep)
Loading required namespace: BiocManager
Error: Bioconductor version '3.19' requires R version '4.4'; use `version = '3.21'`
  with R version 4.6; see https://bioconductor.org/install
Execution halted
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-devel/bin/R -e 'options(repos=c(if(requireNamespace(\"BiocManager\"))BiocManager::repositories(),CRAN=\"http://cloud.r-project.org\"));dep <- read.csv(\"~/genomic-ml/data.table-revdeps/popular_deps.csv\")$dep;ins <- rownames(installed.packages());print(some <- dep[!dep %in% ins]);install.packages(some)' 2>&1"
WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-04-01 r88091) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> options(repos=c(if(requireNamespace("BiocManager"))BiocManager::repositories(),CRAN="http://cloud.r-project.org"));dep <- read.csv("~/genomic-ml/data.table-revdeps/popular_deps.csv")$dep;ins <- rownames(installed.packages());print(some <- dep[!dep %in% ins]);install.packages(some)
Loading required namespace: BiocManager
Error: Bioconductor version '3.19' requires R version '4.4'; use `version = '3.21'`
  with R version 4.6; see https://bioconductor.org/install
Execution halted
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-devel/bin/R -e 'options(repos=c(if(requireNamespace(\"BiocManager\"))BiocManager::repositories(),CRAN=\"http://cloud.r-project.org\"));update.packages(ask=FALSE)' 2>&1"
WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-04-01 r88091) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> options(repos=c(if(requireNamespace("BiocManager"))BiocManager::repositories(),CRAN="http://cloud.r-project.org"));update.packages(ask=FALSE)
Loading required namespace: BiocManager
Error: Bioconductor version '3.19' requires R version '4.4'; use `version = '3.21'`
  with R version 4.6; see https://bioconductor.org/install
Execution halted
WARNING: ignoring environment value of R_HOME
Java interpreter : /usr/bin/java
Java version     : 1.8.0_442
Java home path   : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
using C compiler: ‘gcc (Spack GCC) 12.2.0’
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-devel/include" -DNDEBUG -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre/../include/linux  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c conftest.c -o conftest.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o conftest.so conftest.o -L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre/lib/amd64/server -ljvm


JAVA_HOME        : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre
Java library path: $(JAVA_HOME)/lib/amd64/server
JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
Updating Java configuration in /home/th798/R/R-devel
Done.

[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-devel/bin/R -e 'cat(gsub(\"[()]\", \"\", gsub(\" \", \"_\", R.version[[\"version.string\"]])), file=\"/scratch/th798/data.table-revdeps/2025-04-02/R_DEVEL\")' 2>&1"
WARNING: ignoring environment value of R_HOME

R Under development (unstable) (2025-04-01 r88091) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> cat(gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])), file="/scratch/th798/data.table-revdeps/2025-04-02/R_DEVEL")
> 
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-release/bin/R -e 'install.packages(\"Rmpi\",configure.args=\"--with-mpi=/packages/openmpi/4.1.7\")' 2>&1"
WARNING: ignoring environment value of R_HOME

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> install.packages("Rmpi",configure.args="--with-mpi=/packages/openmpi/4.1.7")
trying URL 'http://cloud.r-project.org/src/contrib/Rmpi_0.7-3.3.tar.gz'
Content type 'application/x-gzip' length 107508 bytes (104 KB)
==================================================
downloaded 104 KB

Loading required package: data.table
* installing *source* package ‘Rmpi’ ...
** package ‘Rmpi’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... /packages/gcc/12.2.0-nnbserq/bin/gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/gcc option to enable C11 features... none needed
Trying to find mpi.h ...
Found in /packages/openmpi/4.1.7/include
Trying to find libmpi.so or libmpich.a ...
Found libmpi in /packages/openmpi/4.1.7/lib
checking for orted... yes
checking for prted... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (Spack GCC) 12.2.0’
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/packages/openmpi/4.1.7/include  -DMPI2 -DOPENMPI  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c Rmpi.c -o Rmpi.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/packages/openmpi/4.1.7/include  -DMPI2 -DOPENMPI  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c conversion.c -o conversion.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -I/packages/openmpi/4.1.7/include  -DMPI2 -DOPENMPI  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c internal.c -o internal.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o Rmpi.so Rmpi.o conversion.o internal.o -L/packages/openmpi/4.1.7/lib -lmpi
installing to /projects/genomic-ml/R/R-release/library/00LOCK-Rmpi/00new/Rmpi/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
Loading required package: data.table
** help
*** installing help indices
** building package indices
Loading required package: data.table
** testing if installed package can be loaded from temporary location
Loading required package: data.table
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Loading required package: data.table
** testing if installed package keeps a record of temporary installation path
* DONE (Rmpi)

The downloaded source packages are in
	‘/tmp/th798/16230237/RtmpN7gTXs/downloaded_packages’
> 
> 
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-release/bin/R -e 'install.packages(\"RODBC\",configure.args=\"--with-odbc-manager=odbc\")' 2>&1"
WARNING: ignoring environment value of R_HOME

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> install.packages("RODBC",configure.args="--with-odbc-manager=odbc")
trying URL 'http://cloud.r-project.org/src/contrib/RODBC_1.3-26.tar.gz'
Content type 'application/x-gzip' length 931107 bytes (909 KB)
==================================================
downloaded 909 KB

Loading required package: data.table
* installing *source* package ‘RODBC’ ...
** package ‘RODBC’ successfully unpacked and MD5 sums checked
** using staged installation
checking for odbc_config... /home/th798/.conda/envs/emacs1/bin/odbc_config
checking for gcc... /packages/gcc/12.2.0-nnbserq/bin/gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for sql.h... yes
checking for sqlext.h... yes
checking for library containing SQLTables... -lodbc
checking for SQLLEN... yes
checking for SQLULEN... yes
checking size of long... 8
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
using C compiler: ‘gcc (Spack GCC) 12.2.0’
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I. -DHAVE_UNISTD_H -DHAVE_PWD_H -DHAVE_SYS_TYPES_H -DHAVE_LONG_LONG -DSIZEOF_LONG_INT=8 -I/home/th798/.conda/envs/emacs1/include   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c RODBC.c -o RODBC.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o RODBC.so RODBC.o -lodbc -L/home/th798/.conda/envs/emacs1/lib
installing to /projects/genomic-ml/R/R-release/library/00LOCK-RODBC/00new/RODBC/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Loading required package: data.table
** help
*** installing help indices
** building package indices
Loading required package: data.table
** installing vignettes
** testing if installed package can be loaded from temporary location
Loading required package: data.table
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Loading required package: data.table
** testing if installed package keeps a record of temporary installation path
* DONE (RODBC)

The downloaded source packages are in
	‘/tmp/th798/16230237/RtmpChaynP/downloaded_packages’
> 
> 
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-release/bin/R -e 'install.packages(\"slam\");install.packages(\"~/R/Rcplex\",repos=NULL,configure.args=\"--with-cplex-dir=/home/th798/cplex\")' 2>&1"
WARNING: ignoring environment value of R_HOME

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> install.packages("slam");install.packages("~/R/Rcplex",repos=NULL,configure.args="--with-cplex-dir=/home/th798/cplex")
trying URL 'http://cloud.r-project.org/src/contrib/slam_0.1-55.tar.gz'
Content type 'application/x-gzip' length 55018 bytes (53 KB)
==================================================
downloaded 53 KB

Loading required package: data.table
* installing *source* package ‘slam’ ...
** package ‘slam’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (Spack GCC) 12.2.0’
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c apply.c -o apply.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c dll.c -o dll.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c grouped.c -o grouped.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c sparse.c -o sparse.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG   -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c util.c -o util.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o slam.so apply.o dll.o grouped.o sparse.o util.o -L/home/th798/R/R-release/lib -lRblas -lgfortran -lm -lquadmath
installing to /projects/genomic-ml/R/R-release/library/00LOCK-slam/00new/slam/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Loading required package: data.table
** help
*** installing help indices
** building package indices
Loading required package: data.table
** testing if installed package can be loaded from temporary location
Loading required package: data.table
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Loading required package: data.table
** testing if installed package keeps a record of temporary installation path
* DONE (slam)

The downloaded source packages are in
	‘/tmp/th798/16230237/RtmpHEhRi2/downloaded_packages’
Loading required package: data.table
* installing *source* package ‘Rcplex’ ...
file ‘src/Rcplex_QCP.c’ has the wrong MD5 checksum
** using staged installation
checking for gawk... gawk
'config' variable 'CPP' is defunct
checking for gcc... /packages/gcc/12.2.0-nnbserq/bin/gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /packages/gcc/12.2.0-nnbserq/bin/gcc accepts -g... yes
checking for /packages/gcc/12.2.0-nnbserq/bin/gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... /packages/gcc/12.2.0-nnbserq/bin/gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking ilcplex/cplex.h usability... yes
checking ilcplex/cplex.h presence... yes
checking for ilcplex/cplex.h... yes
checking for library containing CPXversion... none required
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (Spack GCC) 12.2.0’
make: Nothing to be done for 'all'.
installing to /projects/genomic-ml/R/R-release/library/00LOCK-Rcplex/00new/Rcplex/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Loading required package: data.table
** help
*** installing help indices
** building package indices
Loading required package: data.table
** testing if installed package can be loaded from temporary location
Loading required package: data.table
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Loading required package: data.table
** testing if installed package keeps a record of temporary installation path
* DONE (Rcplex)
> 
> 
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-release/bin/R -e 'options(repos=c(if(requireNamespace(\"BiocManager\"))BiocManager::repositories(),CRAN=\"http://cloud.r-project.org\"));dep <- read.csv(\"missing.deps.csv\")$dep;install.packages(dep)' 2>&1"
WARNING: ignoring environment value of R_HOME

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> options(repos=c(if(requireNamespace("BiocManager"))BiocManager::repositories(),CRAN="http://cloud.r-project.org"));dep <- read.csv("missing.deps.csv")$dep;install.packages(dep)
Loading required namespace: BiocManager
Error: Bioconductor version '3.18' requires R version '4.3'; use `version = '3.20'`
  with R version 4.4; see https://bioconductor.org/install
Execution halted
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-release/bin/R -e 'options(repos=c(if(requireNamespace(\"BiocManager\"))BiocManager::repositories(),CRAN=\"http://cloud.r-project.org\"));dep <- read.csv(\"~/genomic-ml/data.table-revdeps/popular_deps.csv\")$dep;ins <- rownames(installed.packages());print(some <- dep[!dep %in% ins]);install.packages(some)' 2>&1"
WARNING: ignoring environment value of R_HOME

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> options(repos=c(if(requireNamespace("BiocManager"))BiocManager::repositories(),CRAN="http://cloud.r-project.org"));dep <- read.csv("~/genomic-ml/data.table-revdeps/popular_deps.csv")$dep;ins <- rownames(installed.packages());print(some <- dep[!dep %in% ins]);install.packages(some)
Loading required namespace: BiocManager
Error: Bioconductor version '3.18' requires R version '4.3'; use `version = '3.20'`
  with R version 4.4; see https://bioconductor.org/install
Execution halted
[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-release/bin/R -e 'options(repos=c(if(requireNamespace(\"BiocManager\"))BiocManager::repositories(),CRAN=\"http://cloud.r-project.org\"));update.packages(ask=FALSE)' 2>&1"
WARNING: ignoring environment value of R_HOME

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> options(repos=c(if(requireNamespace("BiocManager"))BiocManager::repositories(),CRAN="http://cloud.r-project.org"));update.packages(ask=FALSE)
Loading required namespace: BiocManager
Error: Bioconductor version '3.18' requires R version '4.3'; use `version = '3.20'`
  with R version 4.4; see https://bioconductor.org/install
Execution halted
WARNING: ignoring environment value of R_HOME
Java interpreter : /usr/bin/java
Java version     : 1.8.0_442
Java home path   : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
using C compiler: ‘gcc (Spack GCC) 12.2.0’
/packages/gcc/12.2.0-nnbserq/bin/gcc -I"/home/th798/R/R-release/include" -DNDEBUG -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre/../include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre/../include/linux  -I/home/th798/.conda/envs/emacs1/include -I/home/th798/include    -fpic  -I/packages/gcc/12.2.0-nnbserq/include -I/packages/zstd/1.5.2-cs5ansz/include -I/packages/zlib/1.2.13-po6bkge/include -I/packages/mpc/1.2.1-nnfoiwh/include -I/packages/mpfr/4.1.0-yfsqqka/include -I/packages/gmp/6.2.1-7ydtie6/include  -c conftest.c -o conftest.o
/packages/gcc/12.2.0-nnbserq/bin/gcc -shared -L/home/th798/.conda/envs/emacs1/lib -Wl,-rpath=/home/th798/.conda/envs/emacs1/lib -L/home/th798/lib -Wl,-rpath=/home/th798/lib -L/home/th798/lib64 -Wl,-rpath=/home/th798/lib64 -o conftest.so conftest.o -L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre/lib/amd64/server -ljvm


JAVA_HOME        : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.442.b06-2.el8.x86_64/jre
Java library path: $(JAVA_HOME)/lib/amd64/server
JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
Updating Java configuration in /home/th798/R/R-release
Done.

[1] "module load gdal/3.3.1 && module load jags && module load openmpi && module load anaconda3 && module load gcc && conda activate emacs1 && R_LIBS_USER= PKG_CONFIG_PATH=\"$CONDA_PREFIX/lib/pkgconfig:$HOME/lib/pkgconfig:$HOME/lib64/pkgconfig\" xvfb-run -d /projects/genomic-ml/R/R-release/bin/R -e 'cat(gsub(\"[()]\", \"\", gsub(\" \", \"_\", R.version[[\"version.string\"]])), file=\"/scratch/th798/data.table-revdeps/2025-04-02/R_RELEASE\")' 2>&1"
WARNING: ignoring environment value of R_HOME

R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

Loading required package: data.table
> cat(gsub("[()]", "", gsub(" ", "_", R.version[["version.string"]])), file="/scratch/th798/data.table-revdeps/2025-04-02/R_RELEASE")
> 
> 
> 
> ## Build vignettes and make sure conda env is activated so pandoc is
> ## available.
> if(!requireNamespace("markdown"))install.packages("markdown")
Loading required namespace: markdown
> master.build.cmd <- paste(
+   "module load anaconda3 &&",
+   "conda activate emacs1 &&",
+   R.home("bin/R"), "CMD build", dt.git.dir)
> unlink("data.table*tar.gz")
> system(master.build.cmd)
Loading required package: data.table
* checking for file ‘/home/th798/R/data.table/DESCRIPTION’ ... OK
/usr/bin/cp -LR --preserve=timestamps data.table /tmp/th798/16230237/RtmpwYhtaZ/Rbuild3fd4eefec11be
* preparing ‘data.table’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* running ‘cleanup’
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘data.table_1.17.99.tar.gz’
Warning in sprintf(gettext(fmt, domain = domain), ...) :
  one argument not used by format 'invalid uid value replaced by that for user 'nobody''
Warning: invalid uid value replaced by that for user 'nobody'

> master.old <- paste0("data.table_", master.version, ".tar.gz")
> dl.row <- download.packages("data.table", destdir=".")
trying URL 'http://cloud.r-project.org/src/contrib/data.table_1.17.0.tar.gz'
Content type 'application/x-gzip' length 5833671 bytes (5.6 MB)
==================================================
downloaded 5.6 MB

> colnames(dl.row) <- c("pkg", "path")
> release.old <- dl.row[,"path"]
> 
> ## copy data table source packages to /scratch
> master.new <- file.path(
+   scratch.dir, paste0(
+     "data.table_master_", master.version, ".", master.sha, ".tar.gz"))
> if(grepl(" ", master.new))stop(master.new)
> file.copy(master.old, master.new, overwrite=TRUE)
[1] TRUE
> release.new <- file.path(
+   scratch.dir,
+   sub("_", "_release_", basename(release.old)))
> file.copy(release.old, release.new, overwrite=TRUE)
[1] TRUE
> n.deps <- length(deps)
> ##n.deps <- 2
> task.id <- seq(1, n.deps)
> deps.dt <- data.table(Package=deps[task.id], task.id)
> deps.csv <- file.path(scratch.dir, "deps.csv")
> data.table::fwrite(deps.dt, deps.csv)
> 
> packages.dir <- file.path(scratch.dir, "packages")
> unlink(packages.dir, recursive=TRUE)
> dir.create(packages.dir, showWarnings=FALSE)
> for(dep.i in 1:nrow(deps.dt)){
+   dir.i <- file.path(scratch.dir, "tasks", dep.i)
+   dir.create(dir.i, showWarnings=FALSE, recursive=TRUE)
+   dir.pkg <- file.path(packages.dir, deps.dt[dep.i, Package])
+   system(paste("ln -s", dir.i, dir.pkg))
+ }
> 
> log.txt <- file.path(scratch.dir, "tasks", "%a", "log.txt")
> task.dir <- file.path(
+   "/tmp",
+   USER,
+   "$SLURM_JOB_ID",
+   basename(paste(R.ver.vec)),
+   "$SLURM_ARRAY_TASK_ID")  
> tmp.lib <- file.path(task.dir, "library")
> cache.dir <- file.path(task.dir, "R.cache")
> R.cmds <- paste(
+   env.setup,
+   "mkdir -p", tmp.lib, "&&",
+   "mkdir -p", cache.dir, "&&",
+   "LC_ALL=C",
+   PKG_CONFIG_PATH,
+   paste0("R_CACHE_ROOTPATH=", cache.dir),
+   paste0("R_LIBS_USER=", tmp.lib),
+   "xvfb-run -d",
+   file.path(R.ver.vec, "bin", "R"),
+   "--vanilla",
+   "--args",
+   deps.csv,
+   "$SLURM_ARRAY_TASK_ID",
+   release.new,
+   master.new,
+   "<",
+   normalizePath("check_one.R", mustWork=TRUE))
> large_memory <- fread("large_memory.csv")
> array.mem.dt <- deps.dt[
+ , gigabytes := ifelse(Package %in% large_memory$Package, 16, 4)
+ ][, {
+   d <- diff(gigabytes)!=0
+   is.start <- c(TRUE,d)
+   is.end <- c(d,TRUE)
+   data.table(
+     gigabytes=gigabytes[is.start],
+     start=which(is.start),
+     end=which(is.end))
+ }][
+ , indices := ifelse(start==end, start, paste0(start,"-",end))
+ ][, data.table(
+   array=paste(indices,collapse=","),
+   job=NA_character_
+ ), by=gigabytes]
> for(array.mem.i in 1:nrow(array.mem.dt)){
+   array.mem.row <- array.mem.dt[array.mem.i]
+   run_one_contents = paste0("#!/bin/bash
+ #SBATCH --array=", array.mem.row$array, "
+ #SBATCH --time=9:00:00
+ #SBATCH --mem=", array.mem.row$gigabytes, "GB
+ #SBATCH --cpus-per-task=1
+ #SBATCH --output=", log.txt, "
+ #SBATCH --error=", log.txt, "
+ #SBATCH --job-name=dt", today.str, "
+ module unload R
+ ", paste(R.cmds, collapse="\n"))
+   run_one_sh = file.path(scratch.dir, sprintf("run_one_%dGB.sh", array.mem.row$gigabytes))
+   writeLines(run_one_contents, run_one_sh)
+   cat(
+     "Try a test run:\nSLURM_ARRAY_TASK_ID=",
+     deps.dt[Package=="ShinyQuickStarter", task.id],
+     " bash ", run_one_sh, "\n", sep="")
+   sbatch.cmd <- paste("sbatch", run_one_sh)
+   sbatch.out <- system(sbatch.cmd, intern=TRUE)
+   JOBID <- gsub("[^0-9]", "", sbatch.out)
+   array.mem.dt[array.mem.i, job := JOBID]
+   cat(JOBID, "\n", file=file.path(scratch.dir, "JOBID"), append=TRUE)
+ }
Try a test run:
SLURM_ARRAY_TASK_ID=1318 bash /scratch/th798/data.table-revdeps/2025-04-02/run_one_4GB.sh
Try a test run:
SLURM_ARRAY_TASK_ID=1318 bash /scratch/th798/data.table-revdeps/2025-04-02/run_one_16GB.sh
> 
> cat(Sys.getenv("SLURM_JOB_ID"), "\n", file=file.path(scratch.dir, "PARAMS_ID"))
> analyze.R <- normalizePath("analyze.R", mustWork=TRUE)
> ## https://hpc.nih.gov/docs/job_dependencies.html
> JOBID.colon <- paste(array.mem.dt$job, collapse=":")
> analyze_sh_contents = paste0("#!/bin/bash
+ #SBATCH --time=4:00:00
+ #SBATCH --mem=4GB
+ #SBATCH --cpus-per-task=1
+ #SBATCH --output=analyze.out
+ #SBATCH --error=analyze.out
+ #SBATCH --depend=afterany:", JOBID.colon, "
+ #SBATCH --job-name=analyze", today.str, "
+ ", env.setup, R.home("bin/R"), " --vanilla < ", analyze.R, "\n")
> cat(analyze_sh_contents, file="analyze.sh")
> system("sbatch analyze.sh")
Submitted batch job 16231403
> 
> params_sh_contents = paste0("#!/bin/bash
+ #SBATCH --time=10:00:00
+ #SBATCH --mem=16GB
+ #SBATCH --cpus-per-task=1
+ #SBATCH --output=params.out
+ #SBATCH --error=params.out
+ #SBATCH --begin=", tomorrow.str, "T00:01
+ #SBATCH --job-name=params", today.str, "
+ export HOME=~
+ export USER=`whoami`
+ . ~/.bashrc
+ export
+ cd ~/genomic-ml/data.table-revdeps
+ ", env.setup, " /packages/R/4.1.2/bin/R --no-save < ",
+ "params.R 2>&1 | tee params.teeout\n")
> params_sh <- "~/bin/params.sh"
> cat(params_sh_contents, file=params_sh)
> crontab.line <- system("crontab -l|grep params.sh",intern=TRUE)
You (th798) are not allowed to access to (crontab) because of pam configuration.
Warning message:
In system("crontab -l|grep params.sh", intern = TRUE) :
  running command 'crontab -l|grep params.sh' had status 1
> ##1 0 * * * ~/bin/sbatch_params.sh
> if(FALSE){
+   system(paste("sbatch", params_sh))#now re-launched via crontab.
+ }
>