I completed my PhD (source) in Paris with my advisors Francis Bach and Jean-Philippe Vert and defended on 20 Nov 2012.

After that, I worked as a post-doc in Masashi Sugiyama's lab at Tokyo Institute of Technology, so this page will no longer be updated.

Stuff still hosted here

• Expanded results for the neuroblastoma data breakpoint detection benchmark and genome versions for the positions.
• McGill ChIP-seq peak detection benchmark.
• My PNG plots and corrected RData file for the NTNU Bioinformatics TF ChIP-seq benchmark data set.

Teaching

• My general guide to using emacs and R.
• My comparison of R graphics subsystems.
• Mines ParisTech Machine Learning Module, Spring 2011.
• I am an administrator for the R project's participation in the Google Summer of Code 2012.
• Using R on the CBIO cluster.
• The difficulty of reproducible research using R.
• Tricks for reading large text data files into R.

Links

• Config files: .emacs .Rprofile .xsession .sge_qstat .ssh/config Boot into emacs! install-pgf.sh inconsolata.sty download and install R from sources.
• Mail filtering, My regexp recipes, Web Equation, Detexify.
• What it means to be a computer science researcher, introductory quotation to the Structure and Interpretation of Computer Programs.
• The Popularity of Data Analysis Software compares different statistical packages over time. It would be useful to compare with MATLAB or Octave as well, but is there a central MATLAB-help mailing list?
• What don't you do?, an essay about questioning social norms.
• Graphics: Vischeck shows you what color-blind people see Top ten worst graphs from the statistical genetics literature convert bitmap pie charts into svg bar charts PyNomo The lost art of nomography cranvas: brushed, zoomed, linked plots in R Qt animation framework.
• tup: a build system with nearly optimal performance.

W3C standard XHTML and RSS written using Emacs and Python

Unless otherwise specified, all content on my web site is licensed under a Creative Commons Attribution 3.0 License.